Beer

FTDNA: 2746, BigY2: 2746

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > DF90

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
2746		BigY2
2746
25968369-G-A 23822222-G-A P1_Y1 ***A*
6330254-G-A 6462213-G-A BY59620 IR3_Dst ***A*
26045767-G-A 23899620-G-A P1_Y1 ***A*
6595287-A-AT 6727246-A-AT 10×TA*
13449826-T-C 11294150-T-C A*
6969653-G-A 7101612-G-A BY42691 YY++
7403408-C-T 7535367-C-T BY64997 YY++
7974803-G-A 8106762-G-A BY69136 YY++
8300334-G-A 8432293-G-A BY71507 YY++
8810565-A-G 8942524-A-G Y133837 Y**+
9967847-G-C 10130238-G-C BY156109 Y++
13720315-C-A 11564639-C-A BY156324 DYZ17 ++
14072150-G-A 11951444-G-A BY92783 YY++
14288493-C-T 12167787-C-T BY94599 YY++
15253067-T-A 13141153-T-A BY100450 YY++
15659686-G-A 13547806-G-A BY103155 YY++
16195657-CA-C 14083777-CA-C ++
16801649-C-T 14689769-C-T BY110256 YY++
16924663-T-C 14812783-T-C BY111160 YY++
17878028-A-T 15766148-A-T BY118041 YY++
17970414-C-A 15858534-C-A BY118804 YY++
18246392-AAG-A 16134512-AAG-A ++
18964893-G-T 16853013-G-T BY125145 YY++
21570810-C-T 19408924-C-T BY133970 YY++
21683928-T-C 19522042-T-C BY134703 YY++
21875101-G-T 19713215-G-T BY136103 YY++
22461685-C-G 20299799-C-G BY52830 DYZ19 ++
22467930-G-A 20306044-G-A BY222007 DYZ19 ++
22563981-A-C 20402095-A-C BY139065 YY++
23130945-G-A 20969059-G-A BY143211 YY++
23396139-C-CA 21234253-C-CA +**
24080105-G-A 21933958-G-A P3_b1 +**
13704374-G-C 11548698-G-C BY89123 DYZ17 +
12143-A-G +
8393533-A-AAAAC 8525492-A-AAAAC 9×AAAC****
22253745-C-T 20091859-C-T DYZ19 ****
22346153-T-G 20184267-T-G DYZ19 ****
22430437-C-T 20268551-C-T DYZ19 ****
13712864-G-A 11557188-G-A DYZ17 *
21238206-T-C 19076320-T-C PF1026 **
9542059-G-T 9704450-G-T IR3_Prx **
22351189-C-G 20189303-C-G DYZ19 **
21391665-A-T 19229779-A-T **
7027917-G-T 7159876-G-T Y1175 **
7774205-C-A 7906164-C-A FTA5826 **
14779580-A-G 12667650-A-G FT311945 **
16755002-A-G 14643122-A-G Z20542 **
17081248-A-T 14969368-A-T 9×AT**
17081259-A-T 14969379-A-T **
58982078-C-T 56835931-C-T **
28514780-C-A 26368633-C-A **
58883710-T-C 56707161-A-G **
15882054-G-A 13770174-G-A **
58982072-A-T 56835925-A-T **
9732938-G-A 9895329-G-A IR3_Prx **
22340073-A-C 20178187-A-C DYZ19 **
22369097-G-C 20207211-G-C DYZ19 **
7165301-G-T 7297260-G-T **
58971887-CATAT-C 56825740-CATAT-C 12×AT**
58984647-A-C 56838500-A-C **
19926985-C-T 17815105-C-T P5_Prx **
22092601-CTTTATTTA-C 19930715-CTTTATTTA-C 12×TTTA**
14214957-C-G 12094251-C-G **
20212115-A-AC 18050229-A-AC P5_Dst **
10825301-A-G **
16412332-C-A 14300452-C-A **
28537114-C-A 26390967-C-A **
7414261-G-A 7546220-G-A **
6765639-G-T 6897598-G-T **
11015812-C-A **
14080001-G-T 11959295-G-T **
16305906-C-A 14194026-C-A **
10691367-C-CACCCT **
23825064-ATTTT-A 21663178-ATTTT-A 25×T**
6977075-C-A 7109034-C-A **
10808580-C-T **
7861215-C-A 7993174-C-A **
11652229-T-G DYZ17 **
11001834-G-T **
22303616-C-A 20141730-C-A DYZ19 **
7214428-C-A 7346387-C-A **
10744508-C-T **
10744509-C-CACTTCAGTCA **
14727343-A-G 12615411-A-G **
26391575-T-C 24245428-T-C P1_Y1 **
25733112-G-T 23586965-G-T P1_b3 **
15690141-C-A 13578261-C-A **
10755395-T-C **
10652677-C-T FGC79865 **
56707185-A-C **
56707204-G-T **
56858680-G-T **
20101661-C-T 17989781-C-T P5_Dst **
24910920-G-T 22764773-G-T g1 **
21635192-C-A 19473306-C-A **
27585938-A-T 25439791-A-T P1_Y2 **
10893977-G-T **
18589717-A-T 16477837-A-T **
9125447-CTTTTTT-C **
18263849-T-C 16151969-T-C **
15986652-T-C 13874772-T-C **
10671447-C-A **
11026043-C-A **
21617598-G-T 19455712-G-T **
56835924-C-G **
10685761-C-T **
10652598-C-A **
24405465-C-A 22259318-C-A **
21104460-T-A 18942574-T-A **
11002001-T-C **
16017671-C-A 13905791-C-A **
21211789-C-A 19049903-C-A **
10673153-G-A **
21839987-C-T 19678101-C-T **
10884709-C-A **
8525264-AT-A 8657223-AT-A **
10906972-A-C **
28761381-TC-T 26615234-TC-T **
28776215-C-A 26630068-C-A **
11015806-G-T **
10873117-G-C **
8350215-C-A 8482174-C-A **
10961562-C-A **
6293391-C-T 6425350-C-T IR3_Dst **
24013905-C-T 21867758-C-T **
8568488-G-TT 8700447-G-TT **
28589397-C-A 26443250-C-A **
19183903-A-T 17072023-A-T **
2939150-C-CT 3071109-C-CT 10×T**
13218965-T-A 11063289-T-A **
24353291-C-A 22207144-C-A P3_t1 **
18361436-T-A 16249556-T-A P6_Prx **
10821933-A-G **
8325421-C-A 8457380-C-A **
7464027-G-A 7595986-G-A IR1_L **
9508018-G-T 9670409-G-T **
7334067-C-A 7466026-C-A **
11026013-C-G **
11026044-A-G **
11026048-C-A **
11026055-C-CTGCACTGCTT **
11026079-A-G **
11026104-A-T **
22113180-T-C 19951294-T-C **
6293382-T-G 6425341-T-G IR3_Dst **
28562409-C-A 26416262-C-A **
18150666-C-A 16038786-C-A **
14720317-C-A 12608385-C-A **
24432837-C-A 22286690-C-A 17×A**
21875931-A-G 19714045-A-G **
28570441-C-A 26424294-C-A **
21410233-C-A 19248347-C-A **
10685141-C-A **
16028503-C-A 13916623-C-A **
11015831-T-A **
35473-C-A **
3965254-C-A 4097213-C-A **
16929939-C-A 14818059-C-A **
10799627-T-A **
10821864-C-A **
10991398-C-A **
10821950-T-C **
10821951-CT-C **
10958531-C-A **
10986686-C-A **
8776588-G-T 8908547-G-T **
11001997-C-G **
28673109-C-A 26526962-C-A **
5249182-C-A 5381141-C-A **
8697932-G-T 8829891-G-T **
21972215-C-A 19810329-C-A **
15323621-C-A 13211739-C-A **
16176617-C-A 14064737-C-A **
7131909-C-A 7263868-C-A **
16179673-C-A 14067793-C-A **
19524708-C-A 17412828-C-A **
11015856-A-AT **
24290683-TAA-T 22144536-TAA-T P3_t1 11×A**
16179645-C-A 14067765-C-A **
13717505-C-A 11561829-C-A DYZ17 **
2810421-G-T 2942380-G-T **
56849507-G-T **
9941356-C-A 10103747-C-A **
6978486-C-A 7110445-C-A **
6825633-G-T 6957592-G-T **
16244933-C-A 14133053-C-A **
22351208-T-G 20189322-T-G DYZ19 **
10865914-C-A **
28537744-C-A 26391597-C-A **
22562944-C-A 20401058-C-A **
11015808-T-G **
11015810-T-A **
11015811-C-A **
11015837-G-C **
11015856-A-C **
11015878-C-T **
11015882-C-CTGTTG **
11015902-C-T **
10788475-C-A **
11677672-T-G DYZ17 **
11677673-A-G DYZ17 **
10807098-C-A **
15276711-C-A 13164800-C-A **
24296455-T-TAA 22150308-T-TAA P3_t1 **
10796115-T-A **
10885092-CTT-C **
21391671-C-A 19229785-C-A **
19448197-A-C 17336317-A-C **
6814712-C-A 6946671-C-A **
13462258-C-A 11306582-C-A **
7103389-C-A 7235348-C-A **
11674735-T-A DYZ17 **
2670960-A-T 2802919-A-T **
2686988-A-T 2818947-A-T **
2788308-C-A 2920267-C-A **
2814892-T-C 2946851-T-C **
2852448-A-C 2984407-A-C **
2853586-T-G 2985545-T-G **
2915858-G-T 3047817-G-T **
2972553-T-C 3104512-T-C **
3015740-T-C 3147699-T-C **
3032661-C-A 3164620-C-A **
3223824-C-A 3355783-C-A **
3253005-G-T 3384964-G-T **
3275662-T-G 3407621-T-G **
3279331-A-AT 3411290-A-AT 8×T**
3332496-C-A 3464455-C-A **
3404429-A-G 3536388-A-G **
3409889-T-G 3541848-T-G **
3454592-C-A 3586551-C-A **
3457190-G-T 3589149-G-T **
3522631-C-A 3654590-C-A **
3550759-C-A 3682718-C-A **
3550951-A-C 3682910-A-C **
3550989-C-A 3682948-C-A **
3554341-C-A 3686300-C-A **
3619605-C-A 3751564-C-A **
3635497-C-G 3767456-C-G **
3641824-C-A 3773783-C-A **
3641832-C-A 3773791-C-A **
3641849-AT-A 3773808-AT-A 10×T**
3712134-A-T 3844093-A-T **
3712135-T-A 3844094-T-A **
3817967-A-T 3949926-A-T **
3882356-G-A 4014315-G-A **
3883691-C-G 4015650-C-G **
3883716-G-T 4015675-G-T **
3951478-C-A 4083437-C-A **
3954344-C-A 4086303-C-A **
3976680-A-C 4108639-A-C **
3991871-C-A 4123830-C-A **
4058252-C-G 4190211-C-G **
4058265-C-T 4190224-C-T **
4058274-C-T 4190233-C-T **
4058277-C-T 4190236-C-T FT341316 **
4069599-C-A 4201558-C-A **
4071100-C-A 4203059-C-A **
4081613-C-A 4213572-C-A **
4103249-T-A 4235208-T-A **
4272398-A-G 4404357-A-G **
4302525-C-G 4434484-C-G **
4425989-A-T 4557948-A-T **
4444972-G-T 4576931-G-T **
4521606-C-T 4653565-C-T **
4564593-C-A 4696552-C-A **
4585086-A-T 4717045-A-T **
4677399-C-A 4809358-C-A **
4735810-G-C 4867769-G-C **
4802074-T-G 4934033-T-G **
4861832-C-A 4993791-C-A **
4900473-A-T 5032432-A-T **
4970065-G-T 5102024-G-T **
5030886-G-T 5162845-G-T **
5126333-T-G 5258292-T-G **
5126419-A-G 5258378-A-G **
5144339-G-T 5276298-G-T **
5181271-G-T 5313230-G-T **
5262204-T-A 5394163-T-A **
5421070-T-C 5553029-T-C **
5421079-T-C 5553038-T-C **
5490308-A-T 5622267-A-T **
5534759-C-A 5666718-C-A **
5534764-T-A 5666723-T-A **
5620281-C-A 5752240-C-A **
5676757-C-A 5808716-C-A **
5676911-A-G 5808870-A-G **
5676997-T-G 5808956-T-G **
5690916-T-C 5822875-T-C **
5726128-T-C 5858087-T-C **
5858346-C-A 5990305-C-A **
5861608-A-G 5993567-A-G **
5956902-G-A 6088861-G-A **
5974433-C-A 6106392-C-A **
6037883-A-C 6169842-A-C **
6090239-T-C 6222198-T-C **
6191121-A-C 6323080-A-C IR3_Dst **
6213889-C-A 6345848-C-A IR3_Dst **
6353457-C-A 6485416-C-A **
6429579-C-A 6561538-C-A **
6461117-A-G 6593076-A-G **
6491374-T-C 6623333-T-C **
6505569-T-G 6637528-T-G **
6517578-G-T 6649537-G-T **
6535396-C-A 6667355-C-A **
6648050-C-A 6780009-C-A **
6709772-T-G 6841731-T-G **
6751520-T-C 6883479-T-C **
6795255-C-A 6927214-C-A **
6795321-A-T 6927280-A-T **
6828852-C-G 6960811-C-G **
6833389-C-T 6965348-C-T **
6858814-G-T 6990773-G-T **
6922687-G-T 7054646-G-T **
6922770-C-T 7054729-C-T MF2270 **
6930867-T-G 7062826-T-G **
6977063-C-A 7109022-C-A **
7027919-G-T 7159878-G-T **
7029843-C-A 7161802-C-A **
7038555-T-A 7170514-T-A **
7053848-A-C 7185807-A-C **
7053916-G-T 7185875-G-T **
7054031-C-A 7185990-C-A **
7083041-A-G 7215000-A-G **
7132848-C-A 7264807-C-A **
7144000-C-A 7275959-C-A **
7144095-GCA-G 7276054-GCA-G **
7185673-A-G 7317632-A-G **
7196248-C-A 7328207-C-A **
7205569-C-A 7337528-C-A **
7221390-C-T 7353349-C-T **
7221722-C-A 7353681-C-A **
7228203-C-A 7360162-C-A **
7235337-T-G 7367296-T-G **
7241201-C-A 7373160-C-A **
7242467-T-C 7374426-T-C **
7282390-C-G 7414349-C-G **
7285329-A-T 7417288-A-T **
7285630-CT-C 7417589-CT-C 8×T**
7320478-A-T 7452437-A-T **
7330251-A-G 7462210-A-G **
7336259-C-T 7468218-C-T **
7364037-C-A 7495996-C-A FTB39621 **
7401991-A-G 7533950-A-G **
7418357-C-A 7550316-C-A **
7579606-A-T 7711565-A-T **
7588810-C-A 7720769-C-A **
7613879-G-A 7745838-G-A **
7916955-C-A 8048914-C-A **
7996397-C-A 8128356-C-A **
8052394-C-A 8184353-C-A **
8076195-A-G 8208154-A-G **
8343223-T-G 8475182-T-G **
8343228-A-G 8475187-A-G **
8343234-C-A 8475193-C-A **
8671588-T-C 8803547-T-C **
8674684-C-T 8806643-C-T **
8692651-C-T 8824610-C-T **
8697936-T-G 8829895-T-G **
8697937-G-T 8829896-G-T **
8720221-A-C 8852180-A-C **
8776680-T-G 8908639-T-G **
8786788-AC-A 8918747-AC-A **
8799753-C-A 8931712-C-A **
8799772-T-G 8931731-T-G **
8822410-C-T 8954369-C-T **
8824244-A-G 8956203-A-G **
8878815-T-C 9010774-T-C **
9070080-G-T 9232471-G-T **
9181141-G-A 9343532-G-A **
9181151-G-A 9343542-G-A **
9221751-G-A 9384142-G-A **
9436785-C-A 9599176-C-A **
9438268-G-A 9600659-G-A **
9446221-C-A 9608612-C-A **
9461090-C-G 9623481-C-G **
9542062-G-GGCAT 9704453-G-GGCAT IR3_Prx **
9551441-T-TTG 9713832-T-TTG IR3_Prx **
9592989-T-TA 9755380-T-TA IR3_Prx **
9700824-T-C 9863215-T-C IR3_Prx **
9700831-A-T 9863222-A-T IR3_Prx **
9706443-G-A 9868834-G-A IR3_Prx **
9773456-C-A 9935847-C-A **
9859170-G-T 10021561-G-T **
9934837-C-A 10097228-C-A **
9955426-A-G 10117817-A-G **
9963306-C-A 10125697-C-A **
10026739-A-C 10189130-A-C **
10028330-C-A 10190721-C-A FT376539 **
10658171-C-A **
10663380-C-CACTCA **
10663393-T-TATA **
10663412-T-TTTCAG **
10665811-C-A **
10673124-T-G **
10673227-CTCCACTCCACTTCAG-C **
10673828-C-A **
10676910-C-A **
10677488-T-G **
10744596-C-A **
10748361-C-A **
10750930-G-T **
10753385-C-A **
10763303-TTCCAC-T **
10766057-C-A **
10775028-T-C **
10775092-G-T **
10775122-A-G **
10775459-TCCACC-T **
10775476-C-T **
10779045-G-T **
10783803-C-A **
10788453-C-G **
10788514-T-A **
10788669-A-T **
10803785-G-C **
10803792-ATTC-A **
10803798-C-CTAT **
10816500-T-G **
10816504-T-A **
10816519-T-C **
10818654-T-A **
10818669-TTC-T **
10821876-C-G **
10821923-A-C **
10821932-C-G **
10825309-C-G **
10839051-A-G **
10843497-A-C **
10843510-C-A **
10851094-C-A **
10859016-T-A **
10859033-C-T **
10870378-A-G **
10873129-A-G **
10873132-C-T **
10873138-C-A **
10873144-A-C **
10873155-T-C **
10873160-T-A **
10873167-CCATTG-C **
10886132-A-C **
10892355-C-A **
10892417-C-A **
10895902-G-T **
10906971-A-C **
10912466-A-T **
10914505-T-G **
10922253-C-A **
10922329-C-A **
10940980-C-A **
10946765-T-A **
10946768-A-C **
10946771-T-C **
10949817-G-C **
10949818-C-A **
10953342-C-T **
10953346-C-A **
10956862-C-A **
10958790-C-A **
10961566-C-A **
10961599-C-A **
10967294-T-C **
10967334-T-A **
10988722-C-A **
10992950-A-C **
10993061-C-A **
10997141-A-T **
10998541-T-C **
11015629-C-T **
11033263-C-A **
11033289-A-C **
11033525-C-A **
13209506-C-A 11053830-C-A **
13213513-A-G 11057837-A-G **
13218950-G-A 11063274-G-A **
13225586-C-A 11069910-C-A **
13227141-C-A 11071465-C-A **
13240513-C-A 11084837-C-A **
13268882-G-A 11113206-G-A **
13268883-A-T 11113207-A-T **
13285512-G-T 11129836-G-T **
13290950-T-A 11135274-T-A **
13298966-A-G 11143290-A-G **
13410367-C-A 11254691-C-A **
13472042-T-G 11316366-T-G **
13474647-C-T 11318971-C-T **
13485637-A-G 11329961-A-G **
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13564439-C-A 11408763-C-A **
13596542-T-G 11440866-T-G **
13620227-A-G 11464551-A-G **
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13637857-T-A 11482181-T-A **
13641283-T-G 11485607-T-G **
13641348-T-C 11485672-T-C **
11650646-G-C DYZ17 **
11665742-A-G DYZ17 **
11668323-G-C DYZ17 **
11668334-G-T DYZ17 **
11668518-GCA-G DYZ17 **
11671466-G-T DYZ17 **
11674738-C-G DYZ17 **
11677683-T-A DYZ17 **
13902224-G-A 11781518-G-A **
13925167-C-A 11804461-C-A **
13927391-T-G 11806685-T-G **
13927424-A-G 11806718-A-G **
13941004-T-G 11820298-T-G **
13941040-T-G 11820334-T-G **
13941523-C-A 11820817-C-A **
13975853-C-A 11855147-C-A **
13986208-C-T 11865502-C-T **
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14035132-T-C 11914426-T-C **
14059440-A-G 11938734-A-G **
14128507-G-T 12007801-G-T **
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14142384-G-T 12021678-G-T **
14149200-C-A 12028494-C-A Y49053 **
14299810-C-A 12179104-C-A **
14324499-T-G 12203793-T-G **
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12379368-G-T **
12379369-C-G **
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12877316-A-AC **
15070497-C-A 12958588-C-A **
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15427359-A-G 13315479-A-G **
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15600160-T-A 13488280-T-A **
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16065271-G-A 13953391-G-A **
16146469-A-AG 14034589-A-AG P8_Dst **
16177347-C-A 14065467-C-A **
16196209-T-A 14084329-T-A **
16232279-A-G 14120399-A-G **
16295749-C-A 14183869-C-A **
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16384062-G-T 14272182-G-T **
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16427332-C-T 14315452-C-T **
16427351-T-G 14315471-T-G **
16428778-G-T 14316898-G-T **
16506723-C-A 14394843-C-A **
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16593859-T-C 14481979-T-C **
16612684-A-G 14500804-A-G **
16648383-T-G 14536503-T-G **
16666217-C-A 14554337-C-A **
16678516-A-T 14566636-A-T **
16679389-A-G 14567509-A-G **
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16712952-C-A 14601072-C-A **
16729356-C-A 14617476-C-A **
16920011-A-T 14808131-A-T **
16933058-G-C 14821178-G-C FT337114 **
16971903-G-T 14860023-G-T **
16978045-G-A 14866165-G-A **
17012843-A-G 14900963-A-G **
17061585-G-T 14949705-G-T **
17063770-C-G 14951890-C-G **
17081239-A-T 14969359-A-T **
17086624-T-G 14974744-T-G **
17093633-T-G 14981753-T-G **
17093689-A-G 14981809-A-G **
17096130-T-C 14984250-T-C **
17100416-C-A 14988536-C-A **
17130522-C-A 15018642-C-A **
17164784-A-G 15052904-A-G **
17193213-C-A 15081333-C-A **
17244586-G-C 15132706-G-C **
17246443-C-A 15134563-C-A **
17371226-A-T 15259346-A-T **
17375103-AC-A 15263223-AC-A **
17434115-G-A 15322235-G-A **
17464738-G-C 15352858-G-C **
17464746-G-A 15352866-G-A **
17571983-G-T 15460103-G-T **
17628760-G-T 15516880-G-T **
17633300-A-T 15521420-A-T **
17654934-C-T 15543054-C-T **
17703234-TCTAA-T 15591354-TCTAA-T **
17714728-C-A 15602848-C-A **
17831225-G-T 15719345-G-T **
17840065-C-A 15728185-C-A **
17950820-TTTCAAATA-T 15838940-TTTCAAATA-T **
17950833-T-A 15838953-T-A **
18115975-T-C 16004095-T-C **
18151967-G-T 16040087-G-T **
18159590-G-T 16047710-G-T **
18159606-A-G 16047726-A-G **
18285976-G-A 16174096-G-A P6_Prx **
18290801-G-C 16178921-G-C P6_Prx **
18290809-G-A 16178929-G-A P6_Prx **
18390141-G-A 16278261-G-A P6_Gap **
18402667-C-A 16290787-C-A P6_Gap **
18487808-T-TAAA 16375928-T-TAAA P6_Dst 19×A**
18487829-AG-A 16375949-AG-A P6_Dst **
18503211-C-T 16391331-C-T P6_Dst **
18503212-CAG-C 16391332-CAG-C P6_Dst **
18503216-A-C 16391336-A-C P6_Dst **
18503218-A-ATGT 16391338-A-ATGT P6_Dst **
18547019-C-G 16435139-C-G **
18569620-C-T 16457740-C-T **
18635330-A-AT 16523450-A-AT **
18673714-A-T 16561834-A-T **
18695869-G-A 16583989-G-A **
18723155-G-C 16611275-G-C **
18737630-T-G 16625750-T-G **
18752043-G-T 16640163-G-T **
18780332-C-A 16668452-C-A **
18825611-C-A 16713731-C-A **
18847944-C-A 16736064-C-A **
19112266-C-A 17000386-C-A **
19129576-C-A 17017696-C-A **
19129642-C-A 17017762-C-A **
19130715-C-A 17018835-C-A **
19143226-A-G 17031346-A-G **
19146569-CTTTTTTT-C 17034689-CTTTTTTT-C 28×T**
19245901-C-A 17134021-C-A **
19249625-AT-A 17137745-AT-A **
19352971-G-T 17241091-G-T **
19361261-G-A 17249381-G-A **
19361310-A-C 17249430-A-C **
19415608-G-A 17303728-G-A **
19417329-GA-G 17305449-GA-G **
19482141-C-A 17370261-C-A **
19518631-C-A 17406751-C-A **
19524787-C-A 17412907-C-A **
19535720-C-T 17423840-C-T **
19605027-T-A 17493147-T-A P5_Prx **
19746044-G-T 17634164-G-T P5_Prx **
19831127-A-G 17719247-A-G P5_Prx **
19847666-A-G 17735786-A-G P5_Prx **
19847667-A-T 17735787-A-T P5_Prx **
20101634-A-T 17989754-A-T P5_Dst **
20108244-A-ATG 17996364-A-ATG P5_Dst **
20213252-G-T 18051366-G-T P5_Dst **
20362196-C-A 18200310-C-A P5_Dst **
20362205-C-T 18200319-C-T P5_Dst **
20362209-G-T 18200323-G-T P5_Dst **
20433678-A-T 18271792-A-T P5_Dst **
20569401-G-T 18407515-G-T P5_Dst **
20588356-A-AT 18426470-A-AT P5_Dst **
20588396-C-A 18426510-C-A P5_Dst **
20832451-C-G 18670565-C-G P4_Gap **
20842679-C-G 18680793-C-G P4_Dst **
21037417-A-C 18875531-A-C **
21054347-C-T 18892461-C-T **
21088847-A-G 18926961-A-G **
21115947-C-A 18954061-C-A **
21146232-GTCT-G 18984346-GTCT-G **
21182397-C-CTTT 19020511-C-CTTT 20×T**
21211241-G-T 19049355-G-T **
21221243-G-T 19059357-G-T **
21241748-A-C 19079862-A-C **
21244838-A-T 19082952-A-T **
21253968-T-G 19092082-T-G **
21262289-G-A 19100403-G-A **
21269141-A-C 19107255-A-C **
21270864-A-T 19108978-A-T **
21276313-G-T 19114427-G-T **
21279042-G-T 19117156-G-T FT122574 **
21335560-TCCA-T 19173674-TCCA-T **
21340381-G-T 19178495-G-T **
21381928-T-G 19220042-T-G **
21467916-T-G 19306030-T-G **
21528328-A-G 19366442-A-G **
21528374-A-G 19366488-A-G **
21617600-C-T 19455714-C-T **
21821359-A-C 19659473-A-C **
21862971-C-A 19701085-C-A **
21888308-C-A 19726422-C-A **
21926582-C-A 19764696-C-A **
21949124-G-T 19787238-G-T **
22056298-A-C 19894412-A-C **
22058826-T-A 19896940-T-A **
22076246-C-A 19914360-C-A **
22076910-C-A 19915024-C-A **
22132492-C-A 19970606-C-A **
22168438-A-T 20006552-A-T **
22351207-T-G 20189321-T-G DYZ19 **
22423407-T-C 20261521-T-C DYZ19 **
22489640-G-A 20327754-G-A DYZ19 **
22615428-A-T 20453542-A-T **
22801721-C-A 20639835-C-A **
22804080-C-A 20642194-C-A **
22855037-G-T 20693151-G-T **
22899880-A-T 20737994-A-T **
22901941-T-C 20740055-T-C **
22987110-T-C 20825224-T-C **
22997955-A-G 20836069-A-G **
23087718-C-A 20925832-C-A **
23097849-C-A 20935963-C-A **
23138699-C-A 20976813-C-A **
23188165-T-A 21026279-T-A **
23259280-C-T 21097394-C-T **
23435953-T-A 21274067-T-A **
23532813-G-A 21370927-G-A **
23610043-C-A 21448157-C-A **
23778182-A-T 21616296-A-T **
23808140-T-C 21646254-T-C **
23954181-A-G 21808034-A-G **
24013904-C-A 21867757-C-A **
24333340-T-TC 22187193-T-TC P3_t1 **
24353294-C-CCAT 22207147-C-CCAT P3_t1 **
24363781-C-A 22217634-C-A **
24424207-G-T 22278060-G-T **
24512320-C-A 22366173-C-A **
24634109-A-T 22487962-A-T P3_t2 **
24884202-G-A 22738055-G-A g1 **
26010213-T-C 23864066-T-C P1_Y1 **
26011541-T-C 23865394-T-C P1_Y1 **
26122064-A-G 23975917-A-G P1_Y1 **
26379413-A-AG 24233266-A-AG P1_Y1 **
27966819-T-G 25820672-T-G P1_Y2 **
27966879-A-ACTCCTG 25820732-A-ACTCCTG P1_Y2 **
27988228-T-A 25842081-T-A P1_Y2 **
28504675-A-T 26358528-A-T **
28510255-A-T 26364108-A-T **
28523907-A-G 26377760-A-G **
28547520-C-G 26401373-C-G **
28589570-C-A 26443423-C-A **
28608254-CAT-C 26462107-CAT-C **
28635091-A-C 26488944-A-C **
28687421-G-A 26541274-G-A **
28715167-A-G 26569020-A-G **
28715169-C-T 26569022-C-T **
28715176-C-T 26569029-C-T **
28756143-C-A 26609996-C-A **
28761380-C-T 26615233-C-T **
28768676-C-A 26622529-C-A **
56833142-A-T **
56835826-C-A **
56841474-TA-T **
56843374-C-A **
56843644-G-T **
56844921-G-T **
56847339-T-C **
56850064-G-T **
56862277-G-T **
56862637-G-T **
22295949-G-C 20134063-G-C DYZ19 ***
17189375-G-A 15077495-G-A ***
22446447-G-C 20284561-G-C BY43867 DYZ19 ***
22453529-T-C 20291643-T-C DYZ19 ***
6768780-G-A 6900739-G-A M4721 ***
22453577-C-G 20291691-C-G DYZ19 ***
22256399-T-G 20094513-T-G BY28139 DYZ19 ***
25824839-C-T 23678692-C-T P1_b3 ***
7125199-C-A 7257158-C-A 16×A***
13862360-G-T 11741654-G-T DYZ17 ***
22454514-G-A 20292628-G-A DYZ19 ***
13449001-A-T 11293325-A-T ***
16427427-G-A 14315547-G-A ***
13847222-T-A 11726516-T-A DYZ17 ***
58974927-A-ATTCCT 56828780-A-ATTCCT ***
22365972-G-C 20204086-G-C DYZ19 ***
19187417-C-T 17075537-C-T ***
3550572-CT-C,CC 3682531-CT-C,CC ***
19128802-C-A 17016922-C-A ***
22455855-T-A 20293969-T-A DYZ19 ***
22455856-G-C 20293970-G-C DYZ19 ***
7491366-T-G 7623325-T-G IR1_L ***
13294505-A-G 11138829-A-G ***
22222588-A-G 20060702-A-G DYZ19 ***
22239840-G-A 20077954-G-A DYZ19 ***
22245646-AT-A 20083760-AT-A DYZ19 ***
22285375-T-G 20123489-T-G DYZ19 ***
22285401-C-G 20123515-C-G DYZ19 ***
22312851-AT-A 20150965-AT-A DYZ19 ***
22425134-C-A 20263248-C-A DYZ19 ******
22425328-T-C 20263442-T-C DYZ19 ***
24159904-TA-T 22013757-TA-T P3_b1 ***
24894146-G-A 22747999-G-A g1 ***
24894147-C-G 22748000-C-G g1 ***
25026365-C-A 22880218-C-A g1 ***
25141836-T-C 22995689-T-C g1 ***
26660114-C-A 24513967-C-A P1_g2 ***
10971972-C-T ***
16897633-G-A 14785753-G-A ***
21446259-G-T 19284373-G-T ***
10822595-T-C ***
56825880-C-CATTCCGTTACTTTTCATTCC,T ***
56850762-T-C ***
10673917-CCA-C ***
10673922-C-CT ***
10645970-C-A ***
10683305-C-A,G ***
28808606-A-C,G 26662459-A-C,G ***
21839958-A-T 19678072-A-T ***
10691361-C-CCAATG ***
17707375-T-A 15595495-T-A ***
13898746-G-T 11778040-G-T ***
10673839-A-ATATCT ***
56850758-T-C ***
11677698-A-G DYZ17 ***
8078477-G-T 8210436-G-T ***
10746955-T-A ***
5409728-TTTTCTTTCTTTCTTTC-T,TTTTC 5541687-TTTTCTTTCTTTCTTTC-T,TTTTC 18×TTTC***
8599677-ATTTTT-A 8731636-ATTTTT-A 17×T***
6878073-C-CAA 7010032-C-CAA 17×A***
5698848-G-T 5830807-G-T ***
18232217-T-C 16120337-T-C ***
11677713-A-G DYZ17 ***
2862892-CAAAAA-C 2994851-CAAAAA-C 18×A***
19189228-C-A 17077348-C-A ***
3409695-C-A 3541654-C-A ***
4302889-A-G 4434848-A-G ***
6120309-G-A 6252268-G-A ***
7099944-G-T 7231903-G-T ***
7257303-C-A 7389262-C-A Y83736 ***
7380731-G-A 7512690-G-A ***
8897207-C-A 9029166-C-A ***
8974547-AT-A 9136938-AT-A ***
9959251-G-T 10121642-G-T ***
10672045-G-T ***
10746897-C-G ***
10746926-T-C ***
10789464-C-G,T ***
10937501-ATT-A,AGC ***
10980754-C-A,T ***
10982353-C-A ***
10986817-C-A ***
13521645-C-A 11365969-C-A ***
11654561-G-T DYZ17 ***
11654567-C-T FT87534 DYZ17 ***
13855529-T-G 11734823-T-G DYZ17 ***
14238449-C-A 12117743-C-A ***
14273091-T-C 12152385-T-C ***
14425724-C-A 12304999-C-A ***
14526825-A-T 12415026-A-T ***
14555912-C-A 12444113-C-A ***
14819642-A-T 12707709-A-T ***
15285843-T-C 13173942-T-C ***
15427357-G-A,A 13315477-G-A,A ***
16868585-A-G 14756705-A-G ***
16993737-A-G 14881857-A-G ***
17684554-AGG-A 15572674-AGG-A ***
18875482-T-A 16763602-T-A ***
19110937-T-A 16999057-T-A ***
19111493-C-A 16999613-C-A ***
21033004-T-C 18871118-T-C ***
21237832-T-C 19075946-T-C ***
21382048-C-A 19220162-C-A ***
22023221-TG-G,TTT 19861335-TG-G,TTT ***
22159478-C-A 19997592-C-A ***
23475480-C-T 21313594-C-T ***
23628634-A-C 21466748-A-C ***
26286016-G-T 24139869-G-T P1_Y1 ***
28722364-T-C 26576217-T-C ***
56828790-A-T ***
56830849-C-A ***
56834666-G-T ***
16504-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.