McCarthy
FTDNA: 128856, BigY2: 128856MDKA Birth: Ireland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 128856 | BigY2 128856 |
---|---|---|---|---|---|---|---|---|---|
26201106-A-T | 24054959-A-T | P1_Y1 | A* | ||||||
16713809-T-TA | 14601929-T-TA | 10×A | *** | + | |||||
17742861-G-A | 15630981-G-A | BY117034 | Y | Y | + | + | |||
18804525-A-C | 16692645-A-C | BY123968 | Y | Y | + | + | |||
19172667-C-G | 17060787-C-G | BY126961 | Y | + | + | ||||
21647254-G-A | 19485368-G-A | BY134439 | Y | Y | + | + | |||
23785936-A-T | 21624050-A-T | BY147706 | Y | + | + | ||||
22257907-C-G | 20096021-C-G | BY3346 | BY3345 | DYZ19 | *** | * | |||
22318057-C-G | 20156171-C-G | BY3346 | BY3346 | DYZ19 | *** | * | |||
13329212-T-A | 11173536-T-A | ** | |||||||
13143284-G-C | 10632770-G-C | ** | |||||||
13809903-T-G | 11689197-T-G | DYZ17 | ** | ||||||
15921750-G-T | 13809870-G-T | ** | |||||||
16678638-C-A | 14566758-C-A | ** | |||||||
58974951-G-C | 56828804-G-C | ** | |||||||
24643277-C-T | 22497130-C-T | P3_t2 | ** | ||||||
7201578-A-C | 7333537-A-C | ** | |||||||
19436764-GAGAA-G | 17324884-GAGAA-G | 12×AGAA | ** | ||||||
23439896-G-T | 21278010-G-T | 8×T | ** | ||||||
24643260-C-T | 22497113-C-T | P3_t2 | ** | ||||||
2738762-TC-T | 2870721-TC-T | ** | |||||||
5191313-A-T | 5323272-A-T | ** | |||||||
18984949-TC-T | 16873069-TC-T | ** | |||||||
18890480-T-A | 16778600-T-A | ** | |||||||
13474720-G-A | 11319044-G-A | ** | |||||||
26141314-C-A | 23995167-C-A | P1_Y1 | ** | ||||||
20404427-C-A | 18242541-C-A | P5_Dst | ** | ||||||
24643264-C-T | 22497117-C-T | P3_t2 | ** | ||||||
20404435-T-A | 18242549-T-A | P5_Dst | ** | ||||||
16988864-C-A | 14876984-C-A | ** | |||||||
24013845-G-C | 21867698-G-C | ZZ70_2 | ** | ||||||
19189473-A-T | 17077593-A-T | ** | |||||||
10794278-C-T | ** | ||||||||
10818613-T-C | ** | ||||||||
10818615-C-T | ** | ||||||||
10818624-TCCATTTCATG-T | ** | ||||||||
10818651-C-T | ** | ||||||||
10818660-C-A | ** | ||||||||
10818661-C-G | ** | ||||||||
10818670-T-C | ** | ||||||||
6335209-A-AC | 6467168-A-AC | IR3_Dst | ** | ||||||
6177483-G-T | 6309442-G-T | IR3_Dst | ** | ||||||
15946573-C-A | 13834693-C-A | ** | |||||||
21482782-G-T | 19320896-G-T | ** | |||||||
6177477-TCG-T | 6309436-TCG-T | IR3_Dst | ** | ||||||
7135405-TTTTG-T | 7267364-TTTTG-T | ** | |||||||
14784745-G-C | 12672815-G-C | ** | |||||||
9075188-CTTTTTT-C | 9237579-CTTTTTT-C | 20×T | ** | ||||||
14784735-G-T | 12672805-G-T | ** | |||||||
15477290-T-A | 13365410-T-A | ** | |||||||
17158996-AG-A | 15047116-AG-A | ** | |||||||
5292178-C-A | 5424137-C-A | ** | |||||||
15252796-T-C | 13140882-T-C | ** | |||||||
3847252-C-A | 3979211-C-A | ** | |||||||
24637404-T-TC | 22491257-T-TC | P3_t2 | ** | ||||||
16783439-G-A | 14671559-G-A | ** | |||||||
6765635-G-T | 6897594-G-T | ** | |||||||
23438864-A-C | 21276978-A-C | ** | |||||||
8398840-C-CAA | 8530799-C-CAA | 17×A | ** | ||||||
22124023-C-A | 19962137-C-A | ** | |||||||
15882061-C-A | 13770181-C-A | ** | |||||||
7195307-C-G | 7327266-C-G | 16×A | ** | ||||||
56830031-T-C | ** | ||||||||
56830040-T-A | ** | ||||||||
4920926-G-T | 5052885-G-T | ** | |||||||
17301236-C-A | 15189356-C-A | ** | |||||||
19271586-T-G | 17159706-T-G | ** | |||||||
17218184-C-A | 15106304-C-A | ** | |||||||
14224355-C-A | 12103649-C-A | ** | |||||||
15193430-AT-A | 13081516-AT-A | 8×T | ** | ||||||
14784740-C-T | 12672810-C-T | ** | |||||||
15252799-G-T | 13140885-G-T | ** | |||||||
22902098-G-A | 20740212-G-A | ** | |||||||
6133192-C-A | 6265151-C-A | ** | |||||||
23807566-G-A | 21645680-G-A | ** | |||||||
14784737-A-T | 12672807-A-T | ** | |||||||
15904146-T-A | 13792266-T-A | ** | |||||||
21515851-A-G | 19353965-A-G | ** | |||||||
3817983-C-A | 3949942-C-A | ** | |||||||
21082007-C-A | 18920121-C-A | ** | |||||||
18447651-C-T | 16335771-C-T | P6_Dst | ** | ||||||
18035696-G-TT | 15923816-G-TT | ** | |||||||
14350109-C-A | 12229404-C-A | ** | |||||||
10887994-C-A | ** | ||||||||
23360586-C-A | 21198700-C-A | ** | |||||||
13940932-A-G | 11820226-A-G | ** | |||||||
18215767-C-A | 16103887-C-A | ** | |||||||
10769736-A-C | ** | ||||||||
14286923-G-T | 12166217-G-T | ** | |||||||
4408356-C-A | 4540315-C-A | ** | |||||||
7621161-C-A | 7753120-C-A | ** | |||||||
14458556-T-C | 12337829-T-C | ** | |||||||
27060120-A-T | 24913973-A-T | P1_r4 | ** | ||||||
4936957-C-A | 5068916-C-A | ** | |||||||
13940910-G-A | 11820204-G-A | ** | |||||||
23439905-G-GTT | 21278019-G-GTT | 15×T | ** | ||||||
7242512-C-A | 7374471-C-A | ** | |||||||
10757943-T-G | ** | ||||||||
7470592-T-A | 7602551-T-A | IR1_L | ** | ||||||
13487647-G-C | 11331971-G-C | ** | |||||||
21416546-C-A | 19254660-C-A | ** | |||||||
10880325-T-TACA | ** | ||||||||
19189465-TGA-T | 17077585-TGA-T | ** | |||||||
14279810-C-A | 12159104-C-A | ** | |||||||
10663815-C-A | ** | ||||||||
11646145-C-A | DYZ17 | ** | |||||||
27952160-G-T | 25806013-G-T | P1_Y2 | ** | ||||||
10824165-TC-T | ** | ||||||||
10824174-T-A | ** | ||||||||
26563897-TGA-T | 24417750-TGA-T | P1_g2 | ** | ||||||
13487743-T-TCC | 11332067-T-TCC | ** | |||||||
7288199-C-A | 7420158-C-A | ** | |||||||
15218685-C-A | 13106771-C-A | ** | |||||||
23098814-TTC-T | 20936928-TTC-T | ** | |||||||
19409944-C-A | 17298064-C-A | ** | |||||||
18039366-ATTTTTT-A | 15927486-ATTTTTT-A | 30×T | ** | ||||||
3627480-C-A | 3759439-C-A | ** | |||||||
14754096-A-T | 12642165-A-T | ** | |||||||
10824138-A-T | ** | ||||||||
13940906-G-A | 11820200-G-A | ** | |||||||
14597987-C-A | 12486187-C-A | ** | |||||||
8843564-C-A | 8975523-C-A | ** | |||||||
15773533-C-A | 13661653-C-A | ** | |||||||
11675506-C-A | DYZ17 | ** | |||||||
24904724-A-T | 22758577-A-T | g1 | ** | ||||||
10686902-A-C | ** | ||||||||
17991149-G-A | 15879269-G-A | P7_Prx | ** | ||||||
7240456-T-A | 7372415-T-A | ** | |||||||
8216444-G-T | 8348403-G-T | ** | |||||||
10760253-T-A | ** | ||||||||
10760289-CCG-C | ** | ||||||||
10760295-G-TCC | ** | ||||||||
10760297-T-C | ** | ||||||||
10760323-T-C | ** | ||||||||
14858621-C-A | 12746687-C-A | ** | |||||||
14225245-C-A | 12104539-C-A | ** | |||||||
7866106-C-A | 7998065-C-A | ** | |||||||
14384392-G-T | 12263688-G-T | ** | |||||||
23184225-C-A | 21022339-C-A | ** | |||||||
21540952-C-A | 19379066-C-A | ** | |||||||
27952152-G-T | 25806005-G-T | P1_Y2 | ** | ||||||
8237415-A-G | 8369374-A-G | ** | |||||||
2687941-C-A | 2819900-C-A | ** | |||||||
2729634-C-A | 2861593-C-A | ** | |||||||
2746059-C-A | 2878018-C-A | ** | |||||||
2783627-C-A | 2915586-C-A | ** | |||||||
2866429-C-A | 2998388-C-A | ** | |||||||
2906530-C-A | 3038489-C-A | ** | |||||||
2909197-C-A | 3041156-C-A | ** | |||||||
2940775-G-T | 3072734-G-T | ** | |||||||
2949109-G-T | 3081068-G-T | ** | |||||||
2959969-A-T | 3091928-A-T | ** | |||||||
3011665-C-A | 3143624-C-A | FT27458 | ** | ||||||
3046577-C-A | 3178536-C-A | ** | |||||||
3196832-A-G | 3328791-A-G | ** | |||||||
3267461-C-A | 3399420-C-A | ** | |||||||
3275698-T-C | 3407657-T-C | ** | |||||||
3285884-C-A | 3417843-C-A | ** | |||||||
3346899-C-T | 3478858-C-T | ** | |||||||
3407775-A-G | 3539734-A-G | ** | |||||||
3569361-G-T | 3701320-G-T | ** | |||||||
3612710-G-T | 3744669-G-T | ** | |||||||
3625869-C-A | 3757828-C-A | ** | |||||||
3733044-G-T | 3865003-G-T | ** | |||||||
3739063-C-A | 3871022-C-A | ** | |||||||
3849460-T-C | 3981419-T-C | ** | |||||||
3866070-T-G | 3998029-T-G | ** | |||||||
3953928-G-T | 4085887-G-T | ** | |||||||
3987040-C-A | 4118999-C-A | ** | |||||||
4089096-C-A | 4221055-C-A | ** | |||||||
4144006-T-C | 4275965-T-C | ** | |||||||
4293474-T-C | 4425433-T-C | ** | |||||||
4505229-T-C | 4637188-T-C | ** | |||||||
4521641-A-G | 4653600-A-G | ** | |||||||
4804592-T-G | 4936551-T-G | ** | |||||||
4877015-C-A | 5008974-C-A | ** | |||||||
4947481-ACTTCTG-A | 5079440-ACTTCTG-A | ** | |||||||
5009628-C-A | 5141587-C-A | ** | |||||||
5068984-T-C | 5200943-T-C | ** | |||||||
5112577-G-T | 5244536-G-T | ** | |||||||
5172164-A-T | 5304123-A-T | ** | |||||||
5204515-T-A | 5336474-T-A | ** | |||||||
5292327-CAG-C | 5424286-CAG-C | ** | |||||||
5310990-G-T | 5442949-G-T | ** | |||||||
5644707-C-A | 5776666-C-A | ** | |||||||
5761703-C-A | 5893662-C-A | ** | |||||||
5829119-G-C | 5961078-G-C | ** | |||||||
5858548-G-T | 5990507-G-T | ** | |||||||
5895008-C-A | 6026967-C-A | ** | |||||||
6001380-C-A | 6133339-C-A | ** | |||||||
6216026-C-T | 6347985-C-T | IR3_Dst | ** | ||||||
6250190-T-TC | 6382149-T-TC | IR3_Dst | ** | ||||||
6381580-TG-T | 6513539-TG-T | ** | |||||||
6637257-T-A | 6769216-T-A | ** | |||||||
6646142-C-A | 6778101-C-A | ** | |||||||
6682242-C-A | 6814201-C-A | ** | |||||||
6684137-T-A | 6816096-T-A | ** | |||||||
6732446-C-A | 6864405-C-A | ** | |||||||
6793509-C-A | 6925468-C-A | ** | |||||||
6807331-C-T | 6939290-C-T | FT133333 | ** | ||||||
6807897-G-A | 6939856-G-A | ** | |||||||
6868987-C-A | 7000946-C-A | ** | |||||||
6878787-C-A | 7010746-C-A | ** | |||||||
6916255-C-A | 7048214-C-A | ** | |||||||
6925706-C-A | 7057665-C-A | ** | |||||||
6996562-C-A | 7128521-C-A | ** | |||||||
7012323-A-T | 7144282-A-T | ** | |||||||
7012392-C-A | 7144351-C-A | ** | |||||||
7013559-T-C | 7145518-T-C | ** | |||||||
7028460-C-A | 7160419-C-A | ** | |||||||
7042567-T-A | 7174526-T-A | ** | |||||||
7048605-C-T | 7180564-C-T | ** | |||||||
7050351-C-A | 7182310-C-A | ** | |||||||
7081843-C-A | 7213802-C-A | ** | |||||||
7082580-G-A | 7214539-G-A | ** | |||||||
7103414-T-C | 7235373-T-C | ** | |||||||
7105167-GAA-G | 7237126-GAA-G | 11×A | ** | ||||||
7138452-C-A | 7270411-C-A | ** | |||||||
7143516-C-A | 7275475-C-A | ** | |||||||
7179928-A-T | 7311887-A-T | ** | |||||||
7188325-C-A | 7320284-C-A | ** | |||||||
7197593-T-A | 7329552-T-A | ** | |||||||
7201982-C-A | 7333941-C-A | ** | |||||||
7223027-A-C | 7354986-A-C | ** | |||||||
7235404-C-A | 7367363-C-A | ** | |||||||
7238855-T-A | 7370814-T-A | ** | |||||||
7243144-T-C | 7375103-T-C | ** | |||||||
7252343-C-A | 7384302-C-A | ** | |||||||
7330345-C-A | 7462304-C-A | ** | |||||||
7330350-C-A | 7462309-C-A | ** | |||||||
7336237-A-G | 7468196-A-G | ** | |||||||
7340896-A-G | 7472855-A-G | ** | |||||||
7359262-G-A | 7491221-G-A | ** | |||||||
7372587-A-G | 7504546-A-G | ** | |||||||
7381793-A-C | 7513752-A-C | ** | |||||||
7397688-C-A | 7529647-C-A | ** | |||||||
7450404-G-T | 7582363-G-T | IR1_L | ** | ||||||
7534546-C-A | 7666505-C-A | ** | |||||||
7656756-C-A | 7788715-C-A | ** | |||||||
7705095-C-A | 7837054-C-A | ** | |||||||
7717740-CTTTCTTT-C | 7849699-CTTTCTTT-C | ** | |||||||
7717748-CT-C | 7849707-CT-C | ** | |||||||
7755280-C-A | 7887239-C-A | ** | |||||||
7774153-G-T | 7906112-G-T | ** | |||||||
7821120-C-G | 7953079-C-G | ** | |||||||
7864310-T-G | 7996269-T-G | ** | |||||||
8062224-A-G | 8194183-A-G | ** | |||||||
8067356-C-A | 8199315-C-A | ** | |||||||
8092698-C-A | 8224657-C-A | ** | |||||||
8092743-C-A | 8224702-C-A | ** | |||||||
8214972-A-G | 8346931-A-G | ** | |||||||
8269656-C-A | 8401615-C-A | ** | |||||||
8290213-G-A | 8422172-G-A | ** | |||||||
8343783-C-A | 8475742-C-A | ** | |||||||
8661660-C-A | 8793619-C-A | ** | |||||||
8673358-C-A | 8805317-C-A | ** | |||||||
8706014-G-C | 8837973-G-C | ** | |||||||
8734381-C-A | 8866340-C-A | ** | |||||||
8793010-C-A | 8924969-C-A | ** | |||||||
8799594-A-G | 8931553-A-G | ** | |||||||
8842440-C-A | 8974399-C-A | ** | |||||||
8843574-C-T | 8975533-C-T | ** | |||||||
8848162-G-T | 8980121-G-T | ** | |||||||
8906916-A-T | 9038875-A-T | ** | |||||||
8906918-A-T | 9038877-A-T | ** | |||||||
9015207-C-A | 9177598-C-A | ** | |||||||
9117119-A-G | 9279510-A-G | ** | |||||||
9427644-C-T | 9590035-C-T | ** | |||||||
9491987-A-G | 9654378-A-G | ** | |||||||
9492107-T-G | 9654498-T-G | ** | |||||||
9678321-T-C | 9840712-T-C | IR3_Prx | ** | ||||||
9941104-C-A | 10103495-C-A | ** | |||||||
9967089-C-T | 10129480-C-T | ** | |||||||
9983366-C-A | 10145757-C-A | ** | |||||||
10005949-G-T | 10168340-G-T | ** | |||||||
10623595-G-T | ** | ||||||||
10652920-C-A | ** | ||||||||
10660069-G-T | ** | ||||||||
10668381-A-T | ** | ||||||||
10669238-C-A | ** | ||||||||
10669539-C-T | ** | ||||||||
10670876-C-A | ** | ||||||||
10692679-T-G | ** | ||||||||
10748428-A-T | ** | ||||||||
10764391-C-A | ** | ||||||||
10769727-T-C | ** | ||||||||
10769739-G-C | FT430419 | ** | |||||||
10776242-T-A | ** | ||||||||
10824158-A-T | ** | ||||||||
10839794-T-C | ** | ||||||||
10839800-T-A | ** | ||||||||
10839804-G-C | ** | ||||||||
10839808-G-T | ** | ||||||||
10839813-C-G | ** | ||||||||
10839814-G-T | ** | ||||||||
10839818-A-G | ** | ||||||||
10839838-A-C | ** | ||||||||
10839848-A-T | ** | ||||||||
10839857-A-C | ** | ||||||||
10839859-A-T | ** | ||||||||
10839881-C-G | ** | ||||||||
10851414-G-T | ** | ||||||||
10859646-A-C | ** | ||||||||
10887956-C-T | ** | ||||||||
10887997-C-G | ** | ||||||||
10888003-A-C | ** | ||||||||
10888007-C-T | ** | ||||||||
10888021-C-T | ** | ||||||||
10888027-C-G | ** | ||||||||
10888577-T-A | FT435628 | ** | |||||||
10894650-T-A | ** | ||||||||
10922304-C-A | ** | ||||||||
10949930-C-G | ** | ||||||||
10953668-A-T | ** | ||||||||
10968174-C-A | ** | ||||||||
10977243-C-G | ** | ||||||||
10982818-C-A | ** | ||||||||
10982915-C-A | ** | ||||||||
10983655-C-A | ** | ||||||||
10986398-C-G | ** | ||||||||
10994126-A-G | ** | ||||||||
10994128-T-A | ** | ||||||||
10994137-T-A | ** | ||||||||
10994145-C-T | ** | ||||||||
11000034-C-T | ** | ||||||||
11000205-C-A | ** | ||||||||
11003501-C-T | ** | ||||||||
11003555-C-A | ** | ||||||||
11007393-T-A | ** | ||||||||
11019083-C-A | ** | ||||||||
11021139-C-A | ** | ||||||||
11026736-G-T | ** | ||||||||
13218989-AG-A | 11063313-AG-A | ** | |||||||
13228218-C-A | 11072542-C-A | ** | |||||||
13230446-C-A | 11074770-C-A | ** | |||||||
13245372-A-G | 11089696-A-G | ** | |||||||
13271653-A-C | 11115977-A-C | ** | |||||||
13313911-C-T | 11158235-C-T | ** | |||||||
13315680-C-A | 11160004-C-A | ** | |||||||
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18969248-C-A | 16857368-C-A | ** | |||||||
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19030072-T-A | 16918192-T-A | 13×A | ** | ||||||
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19067941-A-G | 16956061-A-G | ** | |||||||
19075065-T-G | 16963185-T-G | ** | |||||||
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19248120-C-A | 17136240-C-A | ** | |||||||
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19517893-C-A | 17406013-C-A | ** | |||||||
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20404442-T-A | 18242556-T-A | P5_Dst | ** | ||||||
20425965-G-T | 18264079-G-T | P5_Dst | ** | ||||||
20459041-TC-T | 18297155-TC-T | P5_Dst | ** | ||||||
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20793584-T-A | 18631698-T-A | P4_Prx | ** | ||||||
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21111562-G-T | 18949676-G-T | ** | |||||||
21111586-T-C | 18949700-T-C | ** | |||||||
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21153332-T-C | 18991446-T-C | ** | |||||||
21241746-C-A | 19079860-C-A | ** | |||||||
21315145-C-A | 19153259-C-A | ** | |||||||
21382422-C-A | 19220536-C-A | ** | |||||||
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21939943-C-A | 19778057-C-A | ** | |||||||
21953569-G-T | 19791683-G-T | ** | |||||||
22073985-C-A | 19912099-C-A | ** | |||||||
22076197-C-A | 19914311-C-A | ** | |||||||
22079885-C-A | 19917999-C-A | ** | |||||||
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22135604-C-A | 19973718-C-A | ** | |||||||
22181805-G-T | 20019919-G-T | FGC5970 | ** | ||||||
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22579380-C-A | 20417494-C-A | ** | |||||||
22619852-C-T | 20457966-C-T | ** | |||||||
22629917-C-A | 20468031-C-A | ** | |||||||
22658971-G-A | 20497085-G-A | ** | |||||||
22722471-C-A | 20560585-C-A | ** | |||||||
22849530-A-T | 20687644-A-T | ** | |||||||
22971743-G-A | 20809857-G-A | ** | |||||||
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23252441-C-A | 21090555-C-A | ** | |||||||
23262768-C-A | 21100882-C-A | ** | |||||||
23412256-G-T | 21250370-G-T | ** | |||||||
23447438-A-G | 21285552-A-G | ** | |||||||
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23807964-C-A | 21646078-C-A | ** | |||||||
23810695-G-T | 21648809-G-T | FTB13552 | ** | ||||||
24290672-G-A | 22144525-G-A | P3_t1 | ** | ||||||
24422134-A-G | 22275987-A-G | ** | |||||||
24508412-C-T | 22362265-C-T | FT141318 | ** | ||||||
24643238-C-T | 22497091-C-T | P3_t2 | ** | ||||||
24643242-A-T | 22497095-A-T | P3_t2 | ** | ||||||
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24878825-C-T | 22732678-C-T | g1 | ** | ||||||
25803238-A-T | 23657091-A-T | P1_b3 | ** | ||||||
26153802-C-A | 24007655-C-A | P1_Y1 | ** | ||||||
26153993-G-A | 24007846-G-A | P1_Y1 | ** | ||||||
27447462-G-GTA | 25301315-G-GTA | P1_Y2 | ** | ||||||
27447504-G-T | 25301357-G-T | P1_Y2 | ** | ||||||
27952148-T-A | 25806001-T-A | P1_Y2 | ** | ||||||
27971672-C-G | 25825525-C-G | P1_Y2 | ** | ||||||
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28516789-C-A | 26370642-C-A | ** | |||||||
28547341-C-A | 26401194-C-A | ** | |||||||
28580485-C-A | 26434338-C-A | ** | |||||||
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28596820-C-A | 26450673-C-A | ** | |||||||
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28791141-T-G | 26644994-T-G | ** | |||||||
28796816-A-T | 26650669-A-T | ** | |||||||
28796980-G-A | 26650833-G-A | ** | |||||||
56828799-C-G | ** | ||||||||
56828803-C-G | ** | ||||||||
56828954-C-A | ** | ||||||||
56831320-C-A | ** | ||||||||
56836156-C-G | ** | ||||||||
33254-G-T | ** | ||||||||
13196143-C-T | 11040467-C-T | *** | |||||||
13680978-C-A | 11525302-C-A | DYZ17 | *** | ||||||
13680993-T-A | 11525317-T-A | DYZ17 | *** | ||||||
13681057-A-T | 11525381-A-T | DYZ17 | *** | ||||||
13681059-T-C | 11525383-T-C | DYZ17 | *** | ||||||
13869422-A-C,T | 11748716-A-C,T | DYZ17 | *** | ||||||
13453534-C-T | 11297858-C-T | *** | |||||||
13704312-T-G | 11548636-T-G | DYZ17 | *** | ||||||
13664739-G-A | 11509063-G-A | DYZ17 | *** | ||||||
13843764-G-C | 11723058-G-C | DYZ17 | *** | ||||||
13847261-C-A | 11726555-C-A | DYZ17 | *** | ||||||
58973032-A-T | 56826885-A-T | *** | |||||||
13141973-T-C | 10631459-T-C | *** | |||||||
13142018-C-T | 10631504-C-T | *** | |||||||
13446958-C-T | 11291282-C-T | *** | |||||||
13453978-C-A | 11298302-C-A | *** | |||||||
13477319-G-C | 11321643-G-C | F18182 | *** | ||||||
13477344-C-T | 11321668-C-T | *** | |||||||
13477359-G-A | 11321683-G-A | *** | |||||||
13477362-T-C | 11321686-T-C | *** | |||||||
13680909-A-C,T | 11525233-A-C,T | DYZ17 | *** | ||||||
13680924-C-G | 11525248-C-G | DYZ17 | *** | ||||||
13680934-T-A | 11525258-T-A | DYZ17 | *** | ||||||
13680975-G-T | 11525299-G-T | DYZ17 | *** | ||||||
13680979-T-A | 11525303-T-A | DYZ17 | *** | ||||||
13680980-G-T | 11525304-G-T | DYZ17 | *** | ||||||
13805312-G-T | 11684606-G-T | DYZ17 | *** | ||||||
13817970-G-A | 11697264-G-A | DYZ17 | *** | ||||||
13853410-T-A | 11732704-T-A | DYZ17 | *** | ||||||
13866770-A-G | 11746064-A-G | DYZ17 | *** | ||||||
13866777-G-A | 11746071-G-A | DYZ17 | *** | ||||||
13866789-A-G | 11746083-A-G | DYZ17 | *** | ||||||
16108700-T-C | 13996820-T-C | P8_Prx | *** | ||||||
26170518-AGAG-A | 24024371-AGAG-A | P1_Y1 | *** | ||||||
28796106-A-G | 26649959-A-G | *** | |||||||
28796108-T-G | 26649961-T-G | *** | |||||||
13817233-G-C | 11696527-G-C | DYZ17 | *** | ||||||
13817248-G-A | 11696542-G-A | FGC49975 | DYZ17 | *** | |||||
28802493-G-C | 26656346-G-C | *** | |||||||
13451935-T-C | 11296259-T-C | *** | |||||||
20028012-GTA-G | 17916132-GTA-G | P5_Prx | 16×TA | *** | |||||
25818879-TA-T | 23672732-TA-T | P1_b3 | 10×A | *** | |||||
13860156-A-G | 11739450-A-G | DYZ17 | *** | ||||||
13860157-A-T | 11739451-A-T | DYZ17 | *** | ||||||
13866688-T-A | 11745982-T-A | DYZ17 | *** | ||||||
22491236-C-T | 20329350-C-T | DYZ19 | *** | ||||||
13458598-T-C | 11302922-T-C | *** | |||||||
13662120-G-A | 11506444-G-A | DYZ17 | *** | ||||||
28784343-G-A | 26638196-G-A | FT461722 | *** | ||||||
13488064-C-T | 11332388-C-T | *** | |||||||
13674224-A-G | 11518548-A-G | DYZ17 | *** | ||||||
13680778-C-A | 11525102-C-A | DYZ17 | 4×TGGAA | *** | |||||
13680785-G-C | 11525109-G-C | DYZ17 | *** | ||||||
28796099-A-G | 26649952-A-G | *** | |||||||
13817262-G-C | 11696556-G-C | DYZ17 | *** | ||||||
13817267-C-G | 11696561-C-G | DYZ17 | *** | ||||||
13817318-T-G | 11696612-T-G | DYZ17 | *** | ||||||
13850411-C-G | 11729705-C-G | DYZ17 | *** | ||||||
22481567-T-C | 20319681-T-C | DYZ19 | *** | ||||||
6401802-T-C | 6533761-T-C | *** | |||||||
8970842-GAA-G,GA | 9133233-GAA-G,GA | 16×A | *** | ||||||
10017755-C-T | 10180146-C-T | *** | |||||||
10019311-T-A | 10181702-T-A | *** | |||||||
10019322-G-A | 10181713-G-A | *** | |||||||
10019330-C-T | 10181721-C-T | BY26032 FGC68373 | *** | ||||||
13137968-C-A | 10627454-C-A | *** | |||||||
13138054-T-C | 10627540-T-C | *** | |||||||
13138266-G-C | 10627752-G-C | *** | |||||||
13138275-G-C | 10627761-G-C | *** | |||||||
13138296-G-C | 10627782-G-C | *** | |||||||
13140425-C-T | 10629911-C-T | *** | |||||||
13140435-C-T | 10629921-C-T | *** | |||||||
13141442-G-C | 10630928-G-C | *** | |||||||
13142105-A-C | 10631591-A-C | *** | |||||||
13142273-A-C | 10631759-A-C | *** | |||||||
13142936-C-T | 10632422-C-T | *** | |||||||
13143773-TCCACTCCACTGCACTGCACA-T | 10633259-TCCACTCCACTGCACTGCACA-T | *** | |||||||
13194061-C-T | 11038385-C-T | FGC75375 | *** | ||||||
13194065-T-C | 11038389-T-C | BY84193 | *** | ||||||
13194073-T-C | 11038397-T-C | *** | |||||||
13194083-A-C | 11038407-A-C | 4×ACTCC | *** | ||||||
13194123-T-C | 11038447-T-C | *** | |||||||
13196135-T-A | 11040459-T-A | *** | |||||||
13430263-C-T | 11274587-C-T | *** | |||||||
13430286-T-C | 11274610-T-C | *** | |||||||
13445676-A-T | 11290000-A-T | *** | |||||||
13446968-C-T | 11291292-C-T | *** | |||||||
13451923-C-T | 11296247-C-T | *** | |||||||
13451930-C-T | 11296254-C-T | *** | |||||||
13452236-T-G | 11296560-T-G | *** | |||||||
13452693-A-C | 11297017-A-C | *** | |||||||
13453089-G-C | 11297413-G-C | *** | |||||||
13453754-A-T | 11298078-A-T | *** | |||||||
13454010-A-C | 11298334-A-C | *** | |||||||
13454164-C-T | 11298488-C-T | *** | |||||||
13454742-C-T | 11299066-C-T | *** | |||||||
13454754-T-C | 11299078-T-C | *** | |||||||
13455170-T-C | 11299494-T-C | *** | |||||||
13455861-C-T | 11300185-C-T | *** | |||||||
13455862-TGGGTTTGAGTCAATA-T | 11300186-TGGGTTTGAGTCAATA-T | *** | |||||||
13456194-T-C,TCC | 11300518-T-C,TCC | *** | |||||||
13458603-G-C,T | 11302927-G-C,T | *** | |||||||
13459116-G-C | 11303440-G-C | 10×ATTCC | *** | ||||||
13465362-T-C | 11309686-T-C | *** | |||||||
13477313-C-A | 11321637-C-A | *** | |||||||
13542959-AC-A | 11387283-AC-A | *** | |||||||
13652026-A-T | 11496350-A-T | DYZ17 | *** | ||||||
13652035-T-A | 11496359-T-A | DYZ17 | *** | ||||||
13652220-A-G | 11496544-A-G | DYZ17 | *** | ||||||
13652232-G-T | 11496556-G-T | DYZ17 | *** | ||||||
13652245-A-G | 11496569-A-G | DYZ17 | *** | ||||||
13662118-C-A | 11506442-C-A | DYZ17 | *** | ||||||
13662149-A-G | 11506473-A-G | DYZ17 | *** | ||||||
13663789-A-T | 11508113-A-T | DYZ17 | *** | ||||||
13663790-A-G | 11508114-A-G | DYZ17 | *** | ||||||
13663870-C-G | 11508194-C-G | DYZ17 | *** | ||||||
13663915-T-G | 11508239-T-G | DYZ17 | *** | ||||||
13674231-A-C | 11518555-A-C | DYZ17 | *** | ||||||
13674233-A-C | 11518557-A-C | DYZ17 | *** | ||||||
13674248-A-T | 11518572-A-T | DYZ17 | *** | ||||||
13676156-A-T | 11520480-A-T | DYZ17 | *** | ||||||
13676282-C-G | 11520606-C-G | DYZ17 | *** | ||||||
13676283-T-G | 11520607-T-G | DYZ17 | *** | ||||||
13676604-T-A | 11520928-T-A | DYZ17 | *** | ||||||
13680769-T-A | 11525093-T-A | BY41130 | DYZ17 | *** | |||||
13680776-G-C | 11525100-G-C | DYZ17 | *** | ||||||
13680835-G-A | 11525159-G-A | BY88216 | DYZ17 | *** | |||||
13680836-G-A | 11525160-G-A | DYZ17 | *** | ||||||
13680837-A-T | 11525161-A-T | DYZ17 | *** | ||||||
13680847-A-T | 11525171-A-T | DYZ17 | *** | ||||||
13686897-C-T | 11531221-C-T | FT448434 | DYZ17 | *** | |||||
13701783-C-A | 11546107-C-A | DYZ17 | *** | ||||||
13801484-A-G | 11680778-A-G | DYZ17 | *** | ||||||
13803028-GAATGGAATGGACTGCAGTCA-G | 11682322-GAATGGAATGGACTGCAGTCA-G | DYZ17 | *** | ||||||
13803051-T-A | 11682345-T-A | DYZ17 | *** | ||||||
13803125-C-A | 11682419-C-A | FT451685 | DYZ17 | *** | |||||
13805311-G-C | 11684605-G-C | DYZ17 | *** | ||||||
13809908-G-T | 11689202-G-T | DYZ17 | *** | ||||||
13815412-T-C | 11694706-T-C | DYZ17 | *** | ||||||
13815425-A-C | 11694719-A-C | DYZ17 | *** | ||||||
13818670-A-G | 11697964-A-G | DYZ17 | *** | ||||||
13818688-T-A | 11697982-T-A | DYZ17 | *** | ||||||
13818823-T-G | 11698117-T-G | DYZ17 | *** | ||||||
13820862-T-C | 11700156-T-C | DYZ17 | *** | ||||||
13832446-A-G | 11711740-A-G | DYZ17 | *** | ||||||
13833527-G-T | 11712821-G-T | DYZ17 | *** | ||||||
13833665-T-A | 11712959-T-A | DYZ17 | *** | ||||||
13833666-G-C | 11712960-G-C | DYZ17 | *** | ||||||
13838735-T-G | 11718029-T-G | DYZ17 | *** | ||||||
13838744-A-G | 11718038-A-G | DYZ17 | *** | ||||||
13838935-C-G | 11718229-C-G | DYZ17 | *** | ||||||
13838956-G-T | 11718250-G-T | DYZ17 | *** | ||||||
13850391-G-C | 11729685-G-C | DYZ17 | *** | ||||||
13850425-A-T | 11729719-A-T | DYZ17 | *** | ||||||
13850431-T-G | 11729725-T-G | BY40268 | DYZ17 | *** | |||||
13850450-A-T | 11729744-A-T | DYZ17 | *** | ||||||
13850495-C-G | 11729789-C-G | FGC58341 | DYZ17 | *** | |||||
13853627-T-G | 11732921-T-G | DYZ17 | *** | ||||||
13856637-C-G | 11735931-C-G | DYZ17 | *** | ||||||
13859442-A-G | 11738736-A-G | DYZ17 | *** | ||||||
13862120-G-A | 11741414-G-A | DYZ17 | *** | ||||||
13865604-C-T | 11744898-C-T | DYZ17 | *** | ||||||
13865622-AT-A | 11744916-AT-A | DYZ17 | *** | ||||||
13866794-C-T | 11746088-C-T | DYZ17 | *** | ||||||
13866859-C-G,T | 11746153-C-G,T | DYZ17 | *** | ||||||
13868338-C-A | 11747632-C-A | DYZ17 | *** | ||||||
13868896-G-C | 11748190-G-C | DYZ17 | *** | ||||||
13869257-A-T | 11748551-A-T | DYZ17 | *** | ||||||
13869267-A-G | 11748561-A-G | DYZ17 | *** | ||||||
13869965-G-C | 11749259-G-C | DYZ17 | *** | ||||||
13869985-A-G | 11749279-A-G | DYZ17 | *** | ||||||
13869991-G-T | 11749285-G-T | DYZ17 | *** | ||||||
13869992-A-T | 11749286-A-T | DYZ17 | *** | ||||||
13869999-T-A | 11749293-T-A | DYZ17 | *** | ||||||
13870001-G-A | 11749295-G-A | DYZ17 | *** | ||||||
13870023-G-C | 11749317-G-C | DYZ17 | *** | ||||||
13870079-TG-T | 11749373-TG-T | DYZ17 | *** | ||||||
13870082-A-G | 11749376-A-G | DYZ17 | *** | ||||||
13870103-A-G | 11749397-A-G | DYZ17 | *** | ||||||
13870104-C-A | 11749398-C-A | FT350296 | DYZ17 | *** | |||||
16108625-A-G | 13996745-A-G | P8_Prx | *** | ||||||
18639018-AGT-A,AG | 16527138-AGT-A,AG | 26×GT | *** | ||||||
22339611-T-C | 20177725-T-C | FGC2886 | DYZ19 | *** | |||||
22339614-T-A | 20177728-T-A | BY22945 | DYZ19 | *** | |||||
22339620-C-T | 20177734-C-T | BY22461 | DYZ19 | *** | |||||
22367750-T-C | 20205864-T-C | DYZ19 | *** | ||||||
22419908-A-G | 20258022-A-G | DYZ19 | *** | ||||||
22419911-T-C | 20258025-T-C | BY24443 | DYZ19 | *** | |||||
22481429-G-C | 20319543-G-C | DYZ19 | *** | ||||||
22481762-G-A | 20319876-G-A | DYZ19 | *** | ||||||
22481783-A-T | 20319897-A-T | DYZ19 | *** | ||||||
22488101-C-A | 20326215-C-A | DYZ19 | *** | ||||||
22491061-T-C | 20329175-T-C | DYZ19 | *** | ||||||
22502500-G-A | 20340614-G-A | DYZ19 | *** | ||||||
22506434-G-T | 20344548-G-T | DYZ19 | *** | ||||||
22508107-T-G | 20346221-T-G | DYZ19 | *** | ||||||
22508126-G-A | 20346240-G-A | DYZ19 | *** | ||||||
24117012-AG-A | 21970865-AG-A | P3_b1 | *** | ||||||
24209830-GA-G | 22063683-GA-G | P3_b1 | 11×A | *** | |||||
28784403-ATGTAG-A,G | 26638256-ATGTAG-A,G | *** | |||||||
28785574-G-A | 26639427-G-A | *** | |||||||
28786756-A-G | 26640609-A-G | *** | |||||||
28787233-A-G | 26641086-A-G | *** | |||||||
28787246-A-G | 26641099-A-G | *** | |||||||
28793427-A-G | 26647280-A-G | *** | |||||||
28795928-T-A | 26649781-T-A | *** | |||||||
28800144-C-G | 26653997-C-G | *** | |||||||
28800219-A-ATGGAATGGAG | 26654072-A-ATGGAATGGAG | *** | |||||||
28800264-A-G | 26654117-A-G | *** | |||||||
28800321-C-G | 26654174-C-G | *** | |||||||
28805252-TG-A | 26659105-TG-A | *** | |||||||
28809273-C-T | 26663126-C-T | FGC28131 | *** | ||||||
28813022-G-T | 26666875-G-T | *** | |||||||
28813023-A-G | 26666876-A-G | *** | |||||||
58974971-CATTGCATTCA-C | 56828824-CATTGCATTCA-C | *** | |||||||
58975094-TCCA-T | 56828947-TCCA-T | *** | |||||||
58975100-T-C,TTA | 56828953-T-C,TTA | 4×CATTC | *** | ||||||
58975346-G-C | 56829199-G-C | *** | |||||||
58975378-A-T | 56829231-A-T | *** | |||||||
58975709-C-T | 56829562-C-T | *** | |||||||
58977251-C-T | 56831104-C-T | *** | |||||||
58980489-A-C | 56834342-A-C | *** | |||||||
58982133-T-C | 56835986-T-C | *** | |||||||
58982736-C-T | 56836589-C-T | *** | |||||||
13139598-A-C,T | 10629084-A-C,T | *** | |||||||
13680916-A-C,G | 11525240-A-C,G | DYZ17 | *** | ||||||
13143897-A-C,T | 10633383-A-C,T | *** | |||||||
13846299-A-C,G | 11725593-A-C,G | DYZ17 | *** | ||||||
28785686-TTATTG-G,T | 26639539-TTATTG-G,T | *** | |||||||
13680825-T-C,G | 11525149-T-C,G | DYZ17 | *** | ||||||
5785699-C-A | 5917658-C-A | *** | |||||||
13542953-CA-C | 11387277-CA-C | *** | |||||||
7075264-T-G | 7207223-T-G | *** | |||||||
58979172-C-A | 56833025-C-A | *** | |||||||
15250857-AT-A | 13138943-AT-A | *** | |||||||
16290839-G-A | 14178959-G-A | *** | |||||||
58977325-T-A | 56831178-T-A | *** | |||||||
13489666-C-A | 11333990-C-A | *** | |||||||
13455959-A-C,G | 11300283-A-C,G | *** | |||||||
13141762-G-GCCATTCCATT,T | 10631248-G-GCCATTCCATT,T | 11×CCATT | *** | ||||||
13143304-T-A,C | 10632790-T-A,C | *** | |||||||
13452848-CCTT-G,T | 11297172-CCTT-G,T | *** | |||||||
13866809-CGG-C,TGA | 11746103-CGG-C,TGA | DYZ17 | *** | ||||||
2827929-G-A | 2959888-G-A | *** | |||||||
10797941-ACTCTT-A,ACTCCT | *** | ||||||||
7201630-CTT-C | 7333589-CTT-C | 11×T | *** | ||||||
15450403-GAA-G | 13338523-GAA-G | 14×A | *** | ||||||
17515567-C-A | 15403687-C-A | *** | |||||||
7269633-GC-T | 7401592-GC-T | *** | |||||||
10986859-C-T | *** | ||||||||
10801637-C-T | *** | ||||||||
10801707-C-A | *** | ||||||||
56829781-C-A,G | *** | ||||||||
10801673-A-AATTCG | *** | ||||||||
10801715-T-A | *** | ||||||||
17923875-A-T | 15811995-A-T | *** | |||||||
10801706-C-A | *** | ||||||||
13856323-G-A | 11735617-G-A | DYZ17 | *** | ||||||
21235226-TC-T | 19073340-TC-T | *** | |||||||
2960062-CAAAA-C | 3092021-CAAAA-C | 17×A | *** | ||||||
16290834-G-T | 14178954-G-T | *** | |||||||
19075403-C-A | 16963523-C-A | *** | |||||||
14730386-G-A | 12618454-G-A | *** | |||||||
28722458-T-A | 26576311-T-A | *** | |||||||
2763811-G-C | 2895770-G-C | *** | |||||||
2884280-G-T | 3016239-G-T | *** | |||||||
2884323-C-T | 3016282-C-T | *** | |||||||
3599377-C-A | 3731336-C-A | *** | |||||||
5864512-A-G | 5996471-A-G | *** | |||||||
6205632-A-AAT | 6337591-A-AAT | IR3_Dst | *** | ||||||
6479029-C-A | 6610988-C-A | *** | |||||||
6795329-G-T | 6927288-G-T | *** | |||||||
6922843-C-A | 7054802-C-A | *** | |||||||
6995111-A-C | 7127070-A-C | *** | |||||||
7338320-TATAATACTATATGTTATATA-T | 7470279-TATAATACTATATGTTATATA-T | *** | |||||||
7623451-A-G | 7755410-A-G | *** | |||||||
7858385-C-A | 7990344-C-A | *** | |||||||
7996779-C-A | 8128738-C-A | *** | |||||||
8078534-G-T | 8210493-G-T | *** | |||||||
9029734-G-T | 9192125-G-T | *** | |||||||
9136742-T-A | 9299133-T-A | *** | |||||||
9403152-A-ATG | 9565543-A-ATG | 14×TG | *** | ||||||
9498831-C-G | 9661222-C-G | *** | |||||||
10653654-C-A | *** | ||||||||
10666980-A-T | *** | ||||||||
10682583-A-C | *** | ||||||||
10796662-CATT-C | *** | ||||||||
10823982-C-A | *** | ||||||||
10892518-C-T | *** | ||||||||
13394839-CGG-C,CG | 11239163-CGG-C,CG | 13×G | *** | ||||||
13453408-C-T | 11297732-C-T | *** | |||||||
13453409-C-A | 11297733-C-A | *** | |||||||
13453409-C-CA | 11297733-C-CA | *** | |||||||
13457742-A-AG | 11302066-A-AG | *** | |||||||
13468883-T-G | 11313207-T-G | *** | |||||||
13483335-T-C | 11327659-T-C | *** | |||||||
13493752-C-A | 11338076-C-A | *** | |||||||
13643100-G-A | 11487424-G-A | *** | |||||||
11643798-A-C,G | DYZ17 | *** | |||||||
13857006-G-T | 11736300-G-T | A14505 | DYZ17 | *** | |||||
14356913-A-C | 12236208-A-C | *** | |||||||
14513417-G-T | 12401622-G-T | *** | |||||||
14761015-C-A | 12649084-C-A | *** | |||||||
14986691-T-A | 12874759-T-A | FT65144 | *** | ||||||
15026658-ATT-A,AT | 12914746-ATT-A,AT | 13×T | *** | ||||||
15176121-C-A | 13064207-C-A | *** | |||||||
15335934-T-C | 13224052-T-C | *** | |||||||
15604695-C-A | 13492815-C-A | *** | |||||||
15740525-C-A | 13628645-C-A | *** | |||||||
15780260-C-A | 13668380-C-A | *** | |||||||
15914258-C-A | 13802378-C-A | *** | |||||||
16441124-CT-C | 14329244-CT-C | *** | |||||||
16626046-A-G | 14514166-A-G | *** | |||||||
16705082-T-A | 14593202-T-A | *** | |||||||
17071506-A-G | 14959626-A-G | *** | |||||||
17503411-C-A | 15391531-C-A | *** | |||||||
19418524-TA-T,TAA | 17306644-TA-T,TAA | 12×A | *** | ||||||
20334900-G-T | 18173014-G-T | P5_Dst | *** | ||||||
22023221-TG-T,TT | 19861335-TG-T,TT | *** | |||||||
22041594-C-A | 19879708-C-A | *** | |||||||
22185892-G-A | 20024006-G-A | *** | |||||||
23058758-A-G | 20896872-A-G | *** | |||||||
23200447-A-G | 21038561-A-G | *** | |||||||
23277417-C-A | 21115531-C-A | *** | |||||||
28492318-C-A | 26346171-C-A | *** | |||||||
28529913-C-T | 26383766-C-T | *** | |||||||
28665042-A-G | 26518895-A-G | *** | |||||||
28801407-G-T | 26655260-G-T | *** | |||||||
56828938-C-CCATGT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.