Jensen
FTDNA: B1442, BigY2: B1442MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA B1442 | BigY2 B1442 |
---|---|---|---|---|---|---|---|---|---|
13695101-G-A | 11539425-G-A | A* | |||||||
27339025-G-C | 25192878-G-C | P1_g3 | + | ||||||
3720177-G-T | 3852136-G-T | 8×C | *** | * | |||||
14805917-C-A | 12693988-C-A | FT183601 | FT186648 | ** | |||||
8428943-GC-G | 8560902-GC-G | ** | |||||||
9990337-T-C | 10152728-T-C | Z11983 | ** | ||||||
22962204-A-T | 20800318-A-T | ** | |||||||
23052978-C-A | 20891092-C-A | ** | |||||||
21658631-G-C | 19496745-G-C | PF1820 M5305 | ** | ** | |||||
23596923-TTG-T | 21435037-TTG-T | ** | |||||||
28674695-C-T | 26528548-C-T | Y32986 | ** | ||||||
16598981-C-A | 14487101-C-A | ** | |||||||
5701872-A-G | 5833831-A-G | ** | |||||||
17071478-G-GA | 14959598-G-GA | 9×A | ** | ||||||
22360200-T-A | 20198314-T-A | DYZ19 | ** | ||||||
16598968-C-A | 14487088-C-A | ** | |||||||
8172900-A-C | 8304859-A-C | ** | |||||||
14159750-G-C | 12039044-G-C | ** | ** | ||||||
22360220-G-T | 20198334-G-T | DYZ19 | ** | ||||||
11666240-G-T | ** | ||||||||
18127989-C-A | 16016109-C-A | ** | |||||||
10784369-TC-T | ** | ||||||||
10784374-G-CT | ** | ||||||||
24595394-C-T | 22449247-C-T | P3_t2 | ** | ||||||
22800749-C-A | 20638863-C-A | ** | |||||||
10756656-T-TTCCATTTTAA | ** | ||||||||
6179633-G-T | 6311592-G-T | IR3_Dst | ** | ||||||
16298318-A-C | 14186438-A-C | ** | |||||||
5842110-C-A | 5974069-C-A | ** | |||||||
17224395-C-A | 15112515-C-A | ** | |||||||
9639198-G-T | 9801589-G-T | IR3_Prx | ** | ||||||
8481445-AT-A | 8613404-AT-A | ** | |||||||
7132001-C-A | 7263960-C-A | ** | |||||||
11666210-C-A | ** | ||||||||
18951905-C-A | 16840025-C-A | ** | |||||||
14273034-T-G | 12152328-T-G | ** | |||||||
13478258-AGTG-A | 11322582-AGTG-A | ** | |||||||
18695923-ATT-A | 16584043-ATT-A | 12×T | ** | ||||||
15912119-G-T | 13800239-G-T | ** | |||||||
10969031-A-G | ** | ||||||||
10969046-C-G | ** | ||||||||
10969063-C-T | ** | ||||||||
10969070-C-T | ** | ||||||||
19031419-C-A | 16919539-C-A | ** | |||||||
10692045-C-A | ** | ||||||||
21363161-C-A | 19201275-C-A | ** | |||||||
10941206-T-TAGTAC | ** | ||||||||
17440867-C-A | 15328987-C-A | ** | |||||||
13885884-A-G | 11765178-A-G | ** | |||||||
10895763-T-TTGTAA | ** | ||||||||
21994085-C-A | 19832199-C-A | ** | |||||||
20438781-T-G | 18276895-T-G | P5_Dst | ** | ||||||
13885878-A-T | 11765172-A-T | ** | |||||||
24634105-T-C | 22487958-T-C | BY226114 | P3_t2 | ** | |||||
9162884-A-G | 9325275-A-G | ** | |||||||
14392777-G-T | 12272073-G-T | ** | |||||||
17387513-G-T | 15275633-G-T | ** | |||||||
5204640-C-A | 5336599-C-A | ** | |||||||
21902189-T-C | 19740303-T-C | ** | |||||||
10755006-CAATTT-C | ** | ||||||||
20845411-T-TC | 18683525-T-TC | P4_Dst | ** | ||||||
14693480-C-A | 12581546-C-A | ** | |||||||
5586081-C-A | 5718040-C-A | ** | |||||||
10631451-C-T | ** | ||||||||
5420670-C-A | 5552629-C-A | ** | |||||||
11002001-T-C | ** | ||||||||
23955096-C-A | 21808949-C-A | ** | |||||||
13480418-T-C | 11324742-T-C | A17126 | ** | ||||||
13229510-C-A | 11073834-C-A | ** | |||||||
11001999-G-T | ** | ||||||||
15786747-C-A | 13674867-C-A | ** | |||||||
11008035-A-T | ** | ||||||||
8681440-C-A | 8813399-C-A | FGC63393 | ** | ||||||
13480452-A-T | 11324776-A-T | A17128 | ** | ||||||
10884936-G-T | ** | ||||||||
13480847-C-A | 11325171-C-A | ** | |||||||
18569661-C-A | 16457781-C-A | ** | |||||||
13231706-C-A | 11076030-C-A | ** | |||||||
10899161-C-T | ** | ||||||||
10899173-T-G | ** | ||||||||
10899182-TCCATTC-T | ** | ||||||||
10899202-TGCATC-T | ** | ||||||||
6699152-A-G | 6831111-A-G | ** | |||||||
6957706-T-C | 7089665-T-C | ** | |||||||
56858036-C-A | ** | ||||||||
10918148-G-T | ** | ||||||||
22804021-C-A | 20642135-C-A | ** | |||||||
8698679-T-C | 8830638-T-C | ** | |||||||
13273140-C-A | 11117464-C-A | ** | |||||||
3833636-G-A | 3965595-G-A | ** | |||||||
19345898-C-A | 17234018-C-A | ** | |||||||
9942082-A-G | 10104473-A-G | ** | |||||||
9732926-C-T | 9895317-C-T | IR3_Prx | ** | ||||||
13480432-C-A | 11324756-C-A | ** | |||||||
19293767-T-A | 17181887-T-A | Y104306 | ** | ||||||
7338933-C-A | 7470892-C-A | ** | |||||||
18035696-G-TTT | 15923816-G-TTT | ** | |||||||
6925738-C-A | 7057697-C-A | ** | |||||||
56763462-G-A | ** | ||||||||
10632590-C-A | ** | ||||||||
8822454-G-T | 8954413-G-T | ** | |||||||
9400769-C-A | 9563160-C-A | ** | |||||||
18723922-T-C | 16612042-T-C | ** | |||||||
17030605-G-T | 14918725-G-T | ** | |||||||
23435202-C-CT | 21273316-C-CT | ** | |||||||
25246439-T-C | 23100292-T-C | P2_r1 | ** | ||||||
13861074-C-A | 11740368-C-A | ** | |||||||
8281797-G-A | 8413756-G-A | ** | |||||||
10781273-C-A | ** | ||||||||
18534220-G-A | 16422340-G-A | P6_Dst | ** | ||||||
10873187-G-T | ** | ||||||||
9732928-C-T | 9895319-C-T | IR3_Prx | ** | ||||||
10994710-A-T | ** | ||||||||
19125685-A-C | 17013805-A-C | ** | |||||||
18522315-G-T | 16410435-G-T | P6_Dst | ** | ||||||
18628057-C-A | 16516177-C-A | ** | |||||||
3790950-C-A | 3922909-C-A | ** | |||||||
16904606-G-A | 14792726-G-A | ** | |||||||
11001987-CCATTT-C | ** | ||||||||
11001997-C-G | ** | ||||||||
28776799-C-A | 26630652-C-A | ** | |||||||
26325090-G-T | 24178943-G-T | P1_Y1 | ** | ||||||
28560244-C-A | 26414097-C-A | ** | |||||||
14760882-C-A | 12648951-C-A | ** | |||||||
28462066-C-A | 26315919-C-A | ** | |||||||
10664998-G-T | ** | ||||||||
2827909-CTTT-C | 2959868-CTTT-C | 17×T | ** | ||||||
13857117-C-G | 11736411-C-G | ** | |||||||
6330117-A-AC | 6462076-A-AC | IR3_Dst | ** | ||||||
13226907-A-C | 11071231-A-C | ** | |||||||
10887435-C-T | ** | ||||||||
10970932-C-A | ** | ||||||||
4070105-C-A | 4202064-C-A | ** | |||||||
10831315-G-C | ** | ||||||||
10831327-A-G | ** | ||||||||
10831328-C-T | ** | ||||||||
10831351-T-C | ** | ||||||||
10831358-CTCTTA-C | ** | ||||||||
10831375-A-C | ** | ||||||||
13206648-T-G | 11050972-T-G | ** | |||||||
15452555-C-A | 13340675-C-A | ** | |||||||
7436047-C-T | 7568006-C-T | ** | |||||||
4928982-A-G | 5060941-A-G | ** | |||||||
17330306-A-T | 15218426-A-T | ** | |||||||
10968190-A-C | ** | ||||||||
13909228-C-A | 11788522-C-A | ** | |||||||
15179005-C-A | 13067091-C-A | ** | |||||||
15124153-C-A | 13012240-C-A | ** | |||||||
8389625-A-G | 8521584-A-G | ** | |||||||
17821824-T-A | 15709944-T-A | ** | |||||||
10776297-G-T | ** | ||||||||
3833650-C-T | 3965609-C-T | ** | |||||||
15358757-T-C | 13246876-T-C | ** | |||||||
19992562-C-A | 17880682-C-A | P5_Prx | ** | ||||||
13475551-C-A | 11319875-C-A | ** | |||||||
7029943-A-G | 7161902-A-G | ** | |||||||
19476651-C-A | 17364771-C-A | ** | |||||||
15219214-C-A | 13107300-C-A | ** | |||||||
18972920-C-A | 16861040-C-A | ** | |||||||
15579446-C-A | 13467566-C-A | ** | |||||||
8001943-C-T | 8133902-C-T | ** | |||||||
14366728-C-A | 12246023-C-A | ** | |||||||
18756464-C-A | 16644584-C-A | ** | |||||||
10887404-ACT-A | ** | ||||||||
9172677-C-A | 9335068-C-A | ** | |||||||
14300112-C-G | 12179406-C-G | ** | |||||||
3178268-C-A | 3310227-C-A | ** | |||||||
9639196-C-T | 9801587-C-T | IR3_Prx | ** | ||||||
17723073-C-A | 15611193-C-A | ** | |||||||
16539635-C-A | 14427755-C-A | ** | |||||||
16760882-C-A | 14649002-C-A | ** | |||||||
16904599-T-A | 14792719-T-A | ** | |||||||
21323311-T-C | 19161425-T-C | ** | |||||||
10972653-C-A | ** | ||||||||
14377019-C-A | 12256315-C-A | ** | |||||||
16146478-GA-G | 14034598-GA-G | P8_Dst | ** | ||||||
16077527-C-A | 13965647-C-A | ** | |||||||
20438792-C-T | 18276906-C-T | P5_Dst | ** | ||||||
2845148-G-A | 2977107-G-A | ** | |||||||
7270394-C-A | 7402353-C-A | ** | |||||||
17500882-G-T | 15389002-G-T | ** | |||||||
23256379-C-A | 21094493-C-A | ** | |||||||
14246794-C-A | 12126088-C-A | ** | |||||||
14490275-C-A | 12369544-C-A | ** | |||||||
14367614-C-A | 12246910-C-A | ** | |||||||
7195331-G-T | 7327290-G-T | ** | |||||||
7039177-C-A | 7171136-C-A | ** | |||||||
10918139-T-A | ** | ||||||||
14784727-A-C | 12672797-A-C | ** | |||||||
10671328-C-A | ** | ||||||||
28734330-C-A | 26588183-C-A | ** | |||||||
13268801-C-A | 11113125-C-A | ** | |||||||
7935806-C-A | 8067765-C-A | ** | |||||||
10862204-G-T | ** | ||||||||
8681436-C-A | 8813395-C-A | ** | |||||||
10750822-T-C | ** | ||||||||
14765133-C-A | 12653202-C-A | ** | |||||||
10929729-C-T | ** | ||||||||
5560007-T-C | 5691966-T-C | ** | |||||||
7011562-A-G | 7143521-A-G | Y83136 | ** | ||||||
18838482-A-T | 16726602-A-T | ** | |||||||
18848576-G-T | 16736696-G-T | ** | |||||||
15776298-C-A | 13664418-C-A | ** | |||||||
8479452-A-G | 8611411-A-G | ** | |||||||
22867293-C-A | 20705407-C-A | ** | |||||||
22499859-C-T | 20337973-C-T | DYZ19 | ** | ||||||
6981175-G-A | 7113134-G-A | ** | |||||||
9075309-C-A | 9237700-C-A | ** | |||||||
10857775-C-T | ** | ||||||||
23345741-C-A | 21183855-C-A | ** | |||||||
15556728-C-A | 13444848-C-A | ** | |||||||
7990924-C-A | 8122883-C-A | ** | |||||||
18400990-C-A | 16289110-C-A | P6_Gap | ** | ||||||
14316406-C-A | 12195700-C-A | FTA49932 | ** | ||||||
14854303-C-A | 12742369-C-A | ** | |||||||
10959071-C-A | ** | ||||||||
14835395-C-A | 12723462-C-A | ** | |||||||
11011255-G-C | ** | ||||||||
28623304-T-C | 26477157-T-C | ** | |||||||
2738737-A-T | 2870696-A-T | ** | |||||||
10819001-C-A | ** | ||||||||
18271017-A-T | 16159137-A-T | FT6710 | ** | ||||||
13974215-G-T | 11853509-G-T | ** | |||||||
21526906-A-G | 19365020-A-G | ** | |||||||
18911458-C-A | 16799578-C-A | ** | |||||||
15358713-G-A | 13246832-G-A | ** | |||||||
8350860-C-A | 8482819-C-A | ** | |||||||
7148340-C-A | 7280299-C-A | ** | |||||||
13919651-C-A | 11798945-C-A | ** | |||||||
22916835-G-T | 20754949-G-T | ** | |||||||
28544931-C-A | 26398784-C-A | ** | |||||||
15734221-C-A | 13622341-C-A | ** | |||||||
19378044-C-A | 17266164-C-A | ** | |||||||
24634111-T-A | 22487964-T-A | P3_t2 | ** | ||||||
10931593-G-T | ** | ||||||||
10884946-C-G | ** | ||||||||
9421193-C-A | 9583584-C-A | ** | |||||||
21135054-T-C | 18973168-T-C | ** | |||||||
21135065-A-G | 18973179-A-G | ** | |||||||
22360221-T-G | 20198335-T-G | DYZ19 | ** | ||||||
15398711-C-A | 13286831-C-A | ** | |||||||
16598958-G-T | 14487078-G-T | ** | |||||||
17535661-C-A | 15423781-C-A | ** | |||||||
16904596-G-A | 14792716-G-A | ** | |||||||
19218242-C-A | 17106362-C-A | ** | |||||||
15963953-T-TC | 13852073-T-TC | 9×C | ** | ||||||
14357760-T-C | 12237055-T-C | ** | |||||||
18270627-C-A | 16158747-C-A | ** | |||||||
9990333-G-C | 10152724-G-C | ** | |||||||
23625241-C-A | 21463355-C-A | ** | |||||||
9828741-C-G | 9991132-C-G | ** | |||||||
10919866-C-A | ** | ||||||||
7623526-T-C | 7755485-T-C | ** | |||||||
13579706-T-C | 11424030-T-C | ** | |||||||
7197288-C-A | 7329247-C-A | ** | |||||||
10852339-C-T | FT271039 | ** | |||||||
10676733-C-A | ** | ||||||||
8281796-G-A | 8413755-G-A | ** | |||||||
10929666-C-A | ** | ||||||||
19271954-C-A | 17160074-C-A | ** | |||||||
10887422-T-A | ** | ||||||||
18088309-C-A | 15976429-C-A | ** | |||||||
8661332-C-A | 8793291-C-A | ** | |||||||
6512248-G-T | 6644207-G-T | ** | |||||||
6384308-C-A | 6516267-C-A | ** | |||||||
16047655-C-A | 13935775-C-A | FT117367 | ** | ||||||
22202140-C-A | 20040254-C-A | ** | |||||||
9075253-C-A | 9237644-C-A | ** | |||||||
22510555-A-G | 20348669-A-G | DYZ19 | ** | ||||||
7986718-G-T | 8118677-G-T | ** | |||||||
6784400-A-C | 6916359-A-C | ** | |||||||
17885719-G-T | 15773839-G-T | ** | |||||||
27396747-G-T | 25250600-G-T | P1_g3 | ** | ||||||
19436780-A-G | 17324900-A-G | ** | |||||||
18687633-C-A | 16575753-C-A | ** | |||||||
14074025-C-A | 11953319-C-A | ** | |||||||
6818893-C-A | 6950852-C-A | ** | |||||||
2774703-T-C | 2906662-T-C | ** | |||||||
10919448-T-G | ** | ||||||||
13213669-G-A | 11057993-G-A | ** | |||||||
10861093-C-A | ** | ||||||||
15860094-C-A | 13748214-C-A | ** | |||||||
11005196-C-A | ** | ||||||||
14693499-T-C | 12581565-T-C | ** | |||||||
22811157-C-A | 20649271-C-A | ** | |||||||
9166855-C-A | 9329246-C-A | ** | |||||||
24626454-T-TC | 22480307-T-TC | P3_t2 | ** | ||||||
13976004-C-A | 11855298-C-A | ** | |||||||
4540393-C-A | 4672352-C-A | ** | |||||||
7292150-C-A | 7424109-C-A | ** | |||||||
13860675-C-A | 11739969-C-A | FTA25838 | ** | ||||||
5911234-GA-G | 6043193-GA-G | 8×A | ** | ||||||
3876156-C-A | 4008115-C-A | ** | |||||||
15606398-C-A | 13494518-C-A | ** | |||||||
6354069-G-T | 6486028-G-T | ** | |||||||
10972314-C-A | ** | ||||||||
7994355-C-A | 8126314-C-A | ** | |||||||
2806212-T-TA | 2938171-T-TA | ** | |||||||
17193269-G-A | 15081389-G-A | ** | |||||||
15412892-C-A | 13301012-C-A | ** | |||||||
10831343-T-A | ** | ||||||||
26055702-C-A | 23909555-C-A | P1_Y1 | ** | ||||||
2689399-C-A | 2821358-C-A | ** | |||||||
2729971-G-A | 2861930-G-A | ** | |||||||
2738742-C-T | 2870701-C-T | ** | |||||||
2745845-T-G | 2877804-T-G | ** | |||||||
2799503-A-G | 2931462-A-G | ** | |||||||
2817805-C-A | 2949764-C-A | ** | |||||||
2856986-A-G | 2988945-A-G | ** | |||||||
2940522-G-T | 3072481-G-T | ** | |||||||
3048092-G-T | 3180051-G-T | ** | |||||||
3178258-G-T | 3310217-G-T | ** | |||||||
3187898-T-A | 3319857-T-A | FTB19716 | ** | ||||||
3231592-C-A | 3363551-C-A | ** | |||||||
3379908-G-T | 3511867-G-T | ** | |||||||
3389069-T-C | 3521028-T-C | ** | |||||||
3436331-T-A | 3568290-T-A | FTB49947 | ** | ||||||
3648798-A-G | 3780757-A-G | ** | |||||||
3726356-C-A | 3858315-C-A | ** | |||||||
3771370-C-A | 3903329-C-A | ** | |||||||
3849429-C-A | 3981388-C-A | ** | |||||||
3854013-A-T | 3985972-A-T | ** | |||||||
4108124-A-C | 4240083-A-C | ** | |||||||
4116713-G-T | 4248672-G-T | ** | |||||||
4138454-C-T | 4270413-C-T | ** | |||||||
4159952-C-A | 4291911-C-A | ** | |||||||
4187890-C-A | 4319849-C-A | ** | |||||||
4225698-C-A | 4357657-C-A | ** | |||||||
4240487-TCCATA-T | 4372446-TCCATA-T | ** | |||||||
4241195-C-A | 4373154-C-A | ** | |||||||
4256956-C-A | 4388915-C-A | ** | |||||||
4422484-G-T | 4554443-G-T | ** | |||||||
4422492-G-T | 4554451-G-T | ** | |||||||
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23961310-A-G | 21815163-A-G | ** | |||||||
24364026-G-T | 22217879-G-T | ** | |||||||
24403220-A-C | 22257073-A-C | ** | |||||||
24403941-C-A | 22257794-C-A | ** | |||||||
24518550-C-A | 22372403-C-A | ** | |||||||
26730165-G-A | 24584018-G-A | P1_g2 | ** | ||||||
27714422-T-G | 25568275-T-G | P1_Y2 | ** | ||||||
27782537-C-T | 25636390-C-T | P1_Y2 | ** | ||||||
27860727-A-T | 25714580-A-T | P1_Y2 | ** | ||||||
27903021-C-A | 25756874-C-A | P1_Y2 | ** | ||||||
28027827-A-AC | 25881680-A-AC | P1_Y2 | ** | ||||||
28491484-A-G | 26345337-A-G | ** | |||||||
28521219-A-G | 26375072-A-G | ** | |||||||
28616591-G-C | 26470444-G-C | ** | |||||||
28623270-C-A | 26477123-C-A | ** | |||||||
28715964-A-G | 26569817-A-G | ** | |||||||
28791049-G-C | 26644902-G-C | ** | |||||||
28798545-A-GG | 26652398-A-GG | ** | |||||||
28798989-G-C | 26652842-G-C | ** | |||||||
28799092-T-C | 26652945-T-C | ** | |||||||
56858674-C-T | ** | ||||||||
56873871-C-T | ** | ||||||||
58976235-T-C | 56830088-T-C | *** | |||||||
13138364-G-C | 10627850-G-C | *** | |||||||
13835190-T-G | 11714484-T-G | *** | |||||||
22312038-G-T | 20150152-G-T | DYZ19 | *** | ||||||
22312044-A-T | 20150158-A-T | DYZ19 | *** | ||||||
14812064-G-A | 12700135-G-A | *** | |||||||
24807303-A-T | 22661156-A-T | P3_b2 | *** | ||||||
13801488-G-T | 11680782-G-T | FT178444 | *** | ||||||
13835198-T-G | 11714492-T-G | FGC4402 | FGC4414 | *** | |||||
21226300-CTT-C | 19064414-CTT-C | 13×T | *** | ||||||
13138209-CCCATT-C,TCCATT | 10627695-CCCATT-C,TCCATT | *** | |||||||
9340341-GT-G | 9502732-GT-G | 9×T | *** | ||||||
28790324-T-C | 26644177-T-C | *** | |||||||
58995907-G-T | 56849760-G-T | *** | |||||||
3385577-C-A | 3517536-C-A | *** | |||||||
13801542-C-A | 11680836-C-A | *** | |||||||
13143405-G-C | 10632891-G-C | *** | |||||||
58976144-C-A | 56829997-C-A | *** | |||||||
22295955-A-C | 20134069-A-C | DYZ19 | *** | ||||||
4371792-T-C | 4503751-T-C | *** | |||||||
22756061-G-A | 20594175-G-A | *** | *** | ||||||
2960095-G-A | 3092054-G-A | 9×A | *** | ||||||
16679134-A-G | 14567254-A-G | *** | |||||||
25341105-G-A | 23194958-G-A | P2_r1 | *** | ||||||
9013031-C-A,T | 9175422-C-A,T | *** | |||||||
13850715-T-A | 11730009-T-A | *** | |||||||
13850716-C-T | 11730010-C-T | FT328733 | *** | ||||||
13850717-A-G | 11730011-A-G | *** | |||||||
22242696-A-G | 20080810-A-G | DYZ19 | *** | ||||||
22305641-G-A | 20143755-G-A | DYZ19 | *** | ||||||
22360720-G-T | 20198834-G-T | DYZ19 | *** | ||||||
22363560-C-A | 20201674-C-A | DYZ19 | *** | ||||||
22962289-G-A | 20800403-G-A | *** | *** | ||||||
24176610-A-C | 22030463-A-C | P3_b1 | *** | ||||||
24807238-G-A | 22661091-G-A | P3_b2 | *** | ||||||
24911308-G-A | 22765161-G-A | g1 | *** | ||||||
25096889-T-G | 22950742-T-G | g1 | *** | ||||||
25354016-TCTAA-T | 23207869-TCTAA-T | P2_r1 | *** | ||||||
25785948-T-C | 23639801-T-C | P1_b3 | *** | ||||||
25805794-T-A | 23659647-T-A | P1_b3 | *** | ||||||
9384515-C-G | 9546906-C-G | *** | |||||||
7947900-A-G | 8079859-A-G | *** | |||||||
10958311-CTCCATTCCAT-C | *** | ||||||||
7201630-CTT-C | 7333589-CTT-C | 11×T | *** | ||||||
7947843-T-A | 8079802-T-A | BY176511 | *** | ||||||
7947844-A-G | 8079803-A-G | BY176512 | *** | ||||||
7645595-C-A | 7777554-C-A | *** | |||||||
18144168-C-CA | 16032288-C-CA | 9×A | *** | ||||||
7947899-C-A | 8079858-C-A | *** | |||||||
23002319-CTTT-C | 20840433-CTTT-C | 14×T | *** | ||||||
15366021-G-T | 13254141-G-T | *** | |||||||
16309570-TC-T | 14197690-TC-T | *** | |||||||
10999858-C-CCGGAA | *** | ||||||||
21091054-CA-C,CAA | 18929168-CA-C,CAA | 16×A | *** | ||||||
10992311-A-T | *** | ||||||||
10992337-C-G | *** | ||||||||
10889750-AATTCCATTCC-A,AATTCC | *** | ||||||||
22974114-T-A | 20812228-T-A | S24950 | *** | ||||||
13461094-T-A,G | 11305418-T-A,G | *** | |||||||
7947873-A-G | 8079832-A-G | *** | |||||||
7014302-C-A | 7146261-C-A | *** | |||||||
7935842-T-G | 8067801-T-G | *** | |||||||
23827529-C-A | 21665643-C-A | *** | |||||||
15816202-C-A | 13704322-C-A | *** | |||||||
13482955-C-T | 11327279-C-T | *** | |||||||
10748090-G-T | *** | ||||||||
7947848-C-A | 8079807-C-A | BY176513 | *** | ||||||
9077076-G-T | 9239467-G-T | *** | |||||||
22864847-C-A | 20702961-C-A | *** | |||||||
5603751-C-A | 5735710-C-A | *** | |||||||
19720737-C-G | 17608857-C-G | P5_Prx | *** | ||||||
13858699-G-T | 11737993-G-T | *** | |||||||
19421948-C-CT | 17310068-C-CT | 9×T | *** | ||||||
28798763-C-A | 26652616-C-A | *** | |||||||
5107742-C-A | 5239701-C-A | *** | |||||||
10828197-C-CGGAAG | *** | ||||||||
24485691-A-T | 22339544-A-T | *** | |||||||
7361431-C-A | 7493390-C-A | *** | |||||||
17808187-C-A | 15696307-C-A | *** | |||||||
22698953-C-A | 20537067-C-A | *** | |||||||
10828211-T-G | *** | ||||||||
15230856-A-T | 13118942-A-T | *** | |||||||
16768591-G-T | 14656711-G-T | *** | |||||||
17807264-C-A | 15695384-C-A | *** | |||||||
10825426-A-G | *** | ||||||||
19300473-C-A | 17188593-C-A | *** | |||||||
7947865-G-A | 8079824-G-A | *** | |||||||
8351792-C-A | 8483751-C-A | *** | |||||||
2706662-A-G | 2838621-A-G | *** | |||||||
15882455-C-A | 13770575-C-A | *** | |||||||
14696356-C-A | 12584422-C-A | *** | |||||||
10839662-C-A | *** | ||||||||
24485719-TA-T | 22339572-TA-T | *** | |||||||
24485724-TA-T | 22339577-TA-T | *** | |||||||
24485729-TA-T | 22339582-TA-T | *** | |||||||
18385652-C-A | 16273772-C-A | P6_Gap | *** | ||||||
2706650-C-G | 2838609-C-G | *** | |||||||
2706652-C-T | 2838611-C-T | *** | |||||||
2846627-ATT-A | 2978586-ATT-A | 12×T | *** | ||||||
4919276-T-C | 5051235-T-C | *** | |||||||
6523257-C-A | 6655216-C-A | *** | |||||||
6624244-G-T | 6756203-G-T | *** | |||||||
7870445-C-A | 8002404-C-A | FGC2318 | *** | ||||||
8235475-C-T | 8367434-C-T | *** | |||||||
10033846-C-T | 10196237-C-T | *** | |||||||
10861238-C-T | *** | ||||||||
10866124-A-C,T | *** | ||||||||
10927713-C-A | *** | ||||||||
10953416-C-A | *** | ||||||||
10982422-A-T | *** | ||||||||
11659995-A-G | *** | ||||||||
14025821-G-C | 11905115-G-C | *** | |||||||
14981889-C-A | 12869957-C-A | *** | |||||||
15161304-A-G | 13049390-A-G | *** | |||||||
15439064-C-A | 13327184-C-A | *** | |||||||
15761419-G-A | 13649539-G-A | *** | |||||||
15786421-A-G | 13674541-A-G | *** | |||||||
17592006-C-A | 15480126-C-A | *** | |||||||
17950648-C-A | 15838768-C-A | *** | |||||||
18006512-C-A | 15894632-C-A | P7_Gap | *** | ||||||
18593528-C-A | 16481648-C-A | *** | |||||||
18679952-T-G | 16568072-T-G | *** | |||||||
18693510-T-A | 16581630-T-A | *** | |||||||
19271332-A-G | 17159452-A-G | *** | |||||||
21292568-C-A | 19130682-C-A | *** | |||||||
21505540-A-G | 19343654-A-G | *** | |||||||
21556982-A-G | 19395096-A-G | *** | |||||||
21582317-A-T | 19420431-A-T | *** | |||||||
21691554-CTT-C,CT | 19529668-CTT-C,CT | 15×T | *** | ||||||
21924038-C-A | 19762152-C-A | *** | |||||||
22045484-A-T | 19883598-A-T | *** | |||||||
22092602-T-C | 19930716-T-C | *** | |||||||
22476732-C-T | 20314846-C-T | DYZ19 | *** | ||||||
22893208-T-C | 20731322-T-C | *** | |||||||
23381182-C-A | 21219296-C-A | *** | |||||||
23598026-C-A | 21436140-C-A | *** | |||||||
23804313-C-A | 21642427-C-A | *** | |||||||
24511256-C-T | 22365109-C-T | *** | |||||||
25301972-A-G | 23155825-A-G | P2_r1 | *** | ||||||
27240303-G-T | 25094156-G-T | P1_g3 | *** | ||||||
28766373-G-T | 26620226-G-T | *** | |||||||
56836574-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.