Sloan
FTDNA: 601990, BigY2: 601990Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 601990 | BigY2 601990 |
---|---|---|---|---|---|---|---|---|---|
18329071-G-A | 16217191-G-A | P6_Prx | A* | ||||||
17811923-G-A | 15700043-G-A | BY117581 | Y | Y | + | + | |||
22445759-T-G | 20283873-T-G | BY219705 | DYZ19 | + | + | ||||
22299236-G-C | 20137350-G-C | DYZ19 | *** | * | |||||
25887030-T-G | 23740883-T-G | P1_Y1 | ** | ||||||
24013790-G-T | 21867643-G-T | ** | |||||||
13485403-A-G | 11329727-A-G | ** | |||||||
15903981-C-A | 13792101-C-A | ** | |||||||
17196748-GTAGA-G | 15084868-GTAGA-G | ** | |||||||
22461439-C-T | 20299553-C-T | DYZ19 | ** | ** | |||||
27014726-CTCT-C | 24868579-CTCT-C | P1_r4 | ** | ||||||
5987232-CTT-C | 6119191-CTT-C | 12×T | ** | ||||||
22075784-C-A | 19913898-C-A | ** | |||||||
3435818-C-A | 3567777-C-A | ** | |||||||
11026904-C-T | ** | ||||||||
10684622-G-T | ** | ||||||||
10759924-G-C | FT150328 | ** | |||||||
4002992-C-A | 4134951-C-A | ** | |||||||
27423959-C-A | 25277812-C-A | P1_g3 | ** | ||||||
7310569-A-G | 7442528-A-G | ** | |||||||
19187412-TTG-T | 17075532-TTG-T | ** | |||||||
10802356-C-T | ** | ||||||||
15157878-AAAAG-A | 13045964-AAAAG-A | ** | |||||||
14067319-C-A | 11946613-C-A | ** | |||||||
10093111-A-T | 10255502-A-T | ** | |||||||
17915985-C-A | 15804105-C-A | ** | |||||||
19270564-T-G | 17158684-T-G | ** | |||||||
17668416-C-A | 15556536-C-A | ** | |||||||
9941195-C-A | 10103586-C-A | ** | |||||||
15940285-C-A | 13828405-C-A | ** | |||||||
10958935-T-C | ** | ||||||||
16413703-C-A | 14301823-C-A | ** | |||||||
18615981-A-C | 16504101-A-C | ** | |||||||
10895838-C-CCCGGATTGAA | ** | ||||||||
14934450-C-A | 12822515-C-A | ** | |||||||
10759944-G-C | ** | ||||||||
13821317-G-T | 11700611-G-T | ** | |||||||
10994122-C-T | ** | ||||||||
15969952-T-A | 13858072-T-A | ** | |||||||
10652167-T-C | ** | ||||||||
10652171-G-T | ** | ||||||||
10821906-C-G | ** | ||||||||
19463302-C-A | 17351422-C-A | ** | |||||||
25918852-C-A | 23772705-C-A | P1_Y1 | ** | ||||||
17144119-G-A | 15032239-G-A | BY202121 | ** | ||||||
21438776-A-C | 19276890-A-C | ** | |||||||
14297915-CCACA-C | 12177209-CCACA-C | 10×CA | ** | ||||||
9444931-G-T | 9607322-G-T | ** | |||||||
2892542-ATTTT-A | 3024501-ATTTT-A | 18×T | ** | ||||||
10682476-C-T | ** | ||||||||
14549308-TCAA-T | 12437509-TCAA-T | ** | |||||||
16305921-T-C | 14194041-T-C | ** | |||||||
13705401-G-T | 11549725-G-T | ** | |||||||
5576817-C-A | 5708776-C-A | ** | |||||||
10744413-ACATTC-A | ** | ||||||||
19290430-C-A | 17178550-C-A | ** | |||||||
3829006-C-A | 3960965-C-A | ** | |||||||
10781294-C-T | ** | ||||||||
21139518-C-A | 18977632-C-A | ** | |||||||
13870617-C-A | 11749911-C-A | ** | |||||||
10682548-A-G | ** | ||||||||
24264534-A-T | 22118387-A-T | P3_b1 | ** | ||||||
14050002-C-A | 11929296-C-A | ** | |||||||
7241107-C-A | 7373066-C-A | ** | |||||||
15336017-C-T | 13224135-C-T | ** | |||||||
16001036-G-A | 13889156-G-A | ** | |||||||
23633414-A-C | 21471528-A-C | ** | |||||||
19447566-C-A | 17335686-C-A | ** | |||||||
21138769-GA-G | 18976883-GA-G | 9×A | ** | ||||||
23807577-T-C | 21645691-T-C | ** | |||||||
16689757-C-A | 14577877-C-A | ** | |||||||
25918857-T-TA | 23772710-T-TA | P1_Y1 | ** | ||||||
2649802-C-T | 2781761-C-T | 24×A | ** | ||||||
2665460-C-A | 2797419-C-A | ** | |||||||
2684722-A-G | 2816681-A-G | ** | |||||||
2778589-T-G | 2910548-T-G | ** | |||||||
2799585-A-C | 2931544-A-C | ** | |||||||
2888868-CTCA-C | 3020827-CTCA-C | ** | |||||||
2960259-A-C | 3092218-A-C | ** | |||||||
2975515-C-G | 3107474-C-G | ** | |||||||
2975550-T-C | 3107509-T-C | ** | |||||||
3218324-C-G | 3350283-C-G | ** | |||||||
3309334-A-G | 3441293-A-G | ** | |||||||
3334321-G-T | 3466280-G-T | ** | |||||||
3407497-T-A | 3539456-T-A | ** | |||||||
3500162-T-G | 3632121-T-G | ** | |||||||
3554300-C-T | 3686259-C-T | ** | |||||||
3602636-G-C | 3734595-G-C | ** | |||||||
3602744-T-G | 3734703-T-G | ** | |||||||
3606360-C-A | 3738319-C-A | ** | |||||||
3626309-G-T | 3758268-G-T | ** | |||||||
3626976-T-G | 3758935-T-G | ** | |||||||
3709918-A-G | 3841877-A-G | ** | |||||||
3828981-G-T | 3960940-G-T | ** | |||||||
3829061-A-G | 3961020-A-G | ** | |||||||
3849212-C-A | 3981171-C-A | ** | |||||||
3922863-A-G | 4054822-A-G | ** | |||||||
3956549-C-A | 4088508-C-A | ** | |||||||
3998788-C-A | 4130747-C-A | ** | |||||||
3998819-A-G | 4130778-A-G | ** | |||||||
3998833-A-G | 4130792-A-G | ** | |||||||
4078451-T-G | 4210410-T-G | ** | |||||||
4240294-T-G | 4372253-T-G | ** | |||||||
4389397-T-A | 4521356-T-A | ** | |||||||
4397935-A-G | 4529894-A-G | ** | |||||||
4578272-A-C | 4710231-A-C | ** | |||||||
4578321-A-C | 4710280-A-C | ** | |||||||
4626759-A-C | 4758718-A-C | ** | |||||||
4752164-C-T | 4884123-C-T | ** | |||||||
4872510-T-A | 5004469-T-A | ** | |||||||
4898604-C-T | 5030563-C-T | ** | |||||||
4918270-G-A | 5050229-G-A | ** | |||||||
4918320-T-A | 5050279-T-A | ** | |||||||
4918368-A-G | 5050327-A-G | ** | |||||||
4919576-A-T | 5051535-A-T | ** | |||||||
4936548-T-A | 5068507-T-A | ** | |||||||
5063497-C-A | 5195456-C-A | ** | |||||||
5189716-T-C | 5321675-T-C | ** | |||||||
5200825-T-C | 5332784-T-C | FTB54857 | ** | ||||||
5200830-C-T | 5332789-C-T | ** | |||||||
5304964-T-G | 5436923-T-G | ** | |||||||
5304997-T-C | 5436956-T-C | ** | |||||||
5426165-T-G | 5558124-T-G | ** | |||||||
5426390-C-TG | 5558349-C-TG | 17×T | ** | ||||||
5495236-A-T | 5627195-A-T | ** | |||||||
5662299-G-T | 5794258-G-T | FT404788 | ** | ||||||
5684733-C-A | 5816692-C-A | ** | |||||||
5708892-A-C | 5840851-A-C | ** | |||||||
5782334-A-C | 5914293-A-C | ** | |||||||
5927310-T-G | 6059269-T-G | ** | |||||||
5961842-C-CA | 6093801-C-CA | 10×A | ** | ||||||
6010185-A-G | 6142144-A-G | ** | |||||||
6096277-A-C | 6228236-A-C | ** | |||||||
6102336-C-A | 6234295-C-A | ** | |||||||
6147529-C-A | 6279488-C-A | IR3_Dst | ** | ||||||
6183108-G-T | 6315067-G-T | IR3_Dst | ** | ||||||
6368394-G-C | 6500353-G-C | ** | |||||||
6434587-A-C | 6566546-A-C | ** | |||||||
6441420-C-T | 6573379-C-T | ** | |||||||
6454441-T-C | 6586400-T-C | ** | |||||||
6634251-T-C | 6766210-T-C | FT28741 | ** | ||||||
6690263-C-G | 6822222-C-G | ** | |||||||
6757801-A-T | 6889760-A-T | ** | |||||||
6765634-T-G | 6897593-T-G | ** | |||||||
6769788-A-C | 6901747-A-C | ** | |||||||
6769839-A-T | 6901798-A-T | ** | |||||||
6954859-A-C | 7086818-A-C | ** | |||||||
6976435-C-A | 7108394-C-A | ** | |||||||
6983732-A-T | 7115691-A-T | ** | |||||||
7038696-T-A | 7170655-T-A | ** | |||||||
7042638-A-G | 7174597-A-G | ** | |||||||
7042687-A-G | 7174646-A-G | ** | |||||||
7080178-G-C | 7212137-G-C | ** | |||||||
7105192-G-T | 7237151-G-T | ** | |||||||
7123635-C-A | 7255594-C-A | ** | |||||||
7148483-A-G | 7280442-A-G | FT2751 | ** | ||||||
7166838-A-C | 7298797-A-C | ** | |||||||
7166844-T-A | 7298803-T-A | ** | |||||||
7166865-C-G | 7298824-C-G | ** | |||||||
7200014-C-A | 7331973-C-A | ** | |||||||
7236509-T-G | 7368468-T-G | ** | |||||||
7236533-C-G | 7368492-C-G | ** | |||||||
7237108-C-A | 7369067-C-A | ** | |||||||
7253679-A-C | 7385638-A-C | ** | |||||||
7270334-A-G | 7402293-A-G | ** | |||||||
7282376-C-A | 7414335-C-A | ** | |||||||
7299355-G-T | 7431314-G-T | ** | |||||||
7311761-A-C | 7443720-A-C | ** | |||||||
7311901-T-A | 7443860-T-A | ** | |||||||
7311931-T-A | 7443890-T-A | ** | |||||||
7318633-T-C | 7450592-T-C | ** | |||||||
7334034-A-T | 7465993-A-T | ** | |||||||
7334050-C-T | 7466009-C-T | FT362042 | ** | ||||||
7341579-T-C | 7473538-T-C | ** | |||||||
7362476-G-C | 7494435-G-C | ** | |||||||
7362499-T-A | 7494458-T-A | ** | |||||||
7397620-C-A | 7529579-C-A | ** | |||||||
7409708-G-A | 7541667-G-A | ** | |||||||
7418701-C-T | 7550660-C-T | ** | |||||||
7470119-T-A | 7602078-T-A | IR1_L | ** | ||||||
7502027-G-T | 7633986-G-T | IR1_L | ** | ||||||
7502454-C-T | 7634413-C-T | IR1_L | ** | ||||||
7541427-T-A | 7673386-T-A | ** | |||||||
7573545-A-T | 7705504-A-T | ** | |||||||
7573559-C-T | 7705518-C-T | ** | |||||||
7664157-A-G | 7796116-A-G | ** | |||||||
7699356-C-A | 7831315-C-A | ** | |||||||
7717667-T-A | 7849626-T-A | ** | |||||||
7755236-G-A | 7887195-G-A | ** | |||||||
7860089-C-T | 7992048-C-T | ** | |||||||
7935753-C-A | 8067712-C-A | ** | |||||||
8036040-T-G | 8167999-T-G | ** | |||||||
8067464-T-A | 8199423-T-A | ** | |||||||
8094533-C-A | 8226492-C-A | ** | |||||||
8159705-G-A | 8291664-G-A | ** | |||||||
8159749-C-G | 8291708-C-G | ** | |||||||
8171950-A-G | 8303909-A-G | ** | |||||||
8172772-C-T | 8304731-C-T | ** | |||||||
8237501-C-A | 8369460-C-A | ** | |||||||
8296967-C-G | 8428926-C-G | ** | |||||||
8351592-T-A | 8483551-T-A | ** | |||||||
8482033-C-A | 8613992-C-A | ** | |||||||
8669948-T-C | 8801907-T-C | ** | |||||||
8672065-C-A | 8804024-C-A | ** | |||||||
8705858-A-T | 8837817-A-T | ** | |||||||
8705942-C-T | 8837901-C-T | ** | |||||||
8713026-T-G | 8844985-T-G | ** | |||||||
8840588-T-A | 8972547-T-A | ** | |||||||
8987647-C-A | 9150038-C-A | ** | |||||||
9040354-G-C | 9202745-G-C | ** | |||||||
9356917-G-A | 9519308-G-A | ** | |||||||
9507948-T-A | 9670339-T-A | ** | |||||||
9513624-A-G | 9676015-A-G | ** | |||||||
9513693-A-C | 9676084-A-C | ** | |||||||
9618148-A-G | 9780539-A-G | IR3_Prx | ** | ||||||
9697043-C-A | 9859434-C-A | IR3_Prx | ** | ||||||
9936458-C-A | 10098849-C-A | ** | |||||||
9952162-T-G | 10114553-T-G | ** | |||||||
9952174-T-C | 10114565-T-C | ** | |||||||
9968365-T-A | 10130756-T-A | ** | |||||||
9993373-C-A | 10155764-C-A | ** | |||||||
9996265-G-A | 10158656-G-A | ** | |||||||
10032207-T-C | 10194598-T-C | ** | |||||||
10652168-T-A | ** | ||||||||
10654358-T-C | ** | ||||||||
10657631-C-T | ** | ||||||||
10658232-C-A | ** | ||||||||
10664809-C-T | ** | ||||||||
10668590-C-A | ** | ||||||||
10686812-G-C | ** | ||||||||
10686902-A-C | ** | ||||||||
10686906-T-A | ** | ||||||||
10686914-T-A | ** | ||||||||
10686918-C-T | ** | ||||||||
10686928-C-T | ** | ||||||||
10686940-T-C | ** | ||||||||
10686948-C-CACTCT | ** | ||||||||
10692845-T-C | ** | ||||||||
10692902-C-A | ** | ||||||||
10694139-C-A | ** | ||||||||
10755338-A-ATTTTG | ** | ||||||||
10759929-A-G | ** | ||||||||
10759945-C-T | ** | ||||||||
10759980-C-CACTGT | ** | ||||||||
10763252-T-G | ** | ||||||||
10765530-CT-C | ** | ||||||||
10781020-A-T | ** | ||||||||
10781265-A-ACTACG | ** | ||||||||
10781284-T-A | ** | ||||||||
10781286-T-C | ** | ||||||||
10781293-C-G | ** | ||||||||
10781305-A-G | ** | ||||||||
10781309-C-T | ** | ||||||||
10781318-C-T | ** | ||||||||
10787418-TCTATTCC-T | ** | ||||||||
10788004-C-T | ** | ||||||||
10791361-C-A | ** | ||||||||
10792049-C-A | ** | ||||||||
10792720-C-A | ** | ||||||||
10793539-T-C | ** | ||||||||
10796585-T-C | ** | ||||||||
10804478-C-T | ** | ||||||||
10819414-T-G | ** | ||||||||
10821874-C-CTCGAT | ** | ||||||||
10821933-A-G | ** | ||||||||
10823689-C-T | ** | ||||||||
10824026-C-A | ** | ||||||||
10828961-T-C | ** | ||||||||
10831088-A-T | ** | ||||||||
10831113-A-C | ** | ||||||||
10863452-A-C | ** | ||||||||
10878289-C-T | ** | ||||||||
10880029-G-T | ** | ||||||||
10919062-A-C | ** | ||||||||
10926681-T-A | ** | ||||||||
10926691-T-G | ** | ||||||||
10926709-A-ACTCGACTCCACTC | ** | ||||||||
10932102-C-A | ** | ||||||||
10958427-A-G | ** | ||||||||
10962946-T-C | ** | ||||||||
10967330-T-G | ** | ||||||||
10971099-C-A | ** | ||||||||
10971176-A-C | ** | ||||||||
10973618-G-C | ** | ||||||||
10973638-G-A | ** | ||||||||
10973639-T-C | ** | ||||||||
10973657-C-A | ** | ||||||||
10986889-C-A | ** | ||||||||
10988626-A-C | ** | ||||||||
10993918-C-G | ** | ||||||||
10993952-C-A | ** | ||||||||
10994118-T-C | ** | ||||||||
10994125-C-A | ** | ||||||||
10994832-T-C | ** | ||||||||
10995637-G-C | ** | ||||||||
10997580-T-C | ** | ||||||||
10997864-C-T | ** | ||||||||
11000416-T-A | ** | ||||||||
11004701-A-G | ** | ||||||||
11004761-T-G | ** | ||||||||
11009659-A-T | ** | ||||||||
11026960-T-C | ** | ||||||||
11033966-C-A | ** | ||||||||
13196051-TC-T | 11040375-TC-T | ** | |||||||
13213910-A-G | 11058234-A-G | ** | |||||||
13213912-T-G | 11058236-T-G | ** | |||||||
13213923-T-G | 11058247-T-G | ** | |||||||
13225629-A-C | 11069953-A-C | ** | |||||||
13226855-G-T | 11071179-G-T | ** | |||||||
13233532-C-A | 11077856-C-A | ** | |||||||
13242965-C-A | 11087289-C-A | ** | |||||||
13296855-C-A | 11141179-C-A | F18127 | ** | ||||||
13313644-G-C | 11157968-G-C | ** | |||||||
13325366-C-A | 11169690-C-A | ** | |||||||
13422186-T-A | 11266510-T-A | ** | |||||||
13422330-A-G | 11266654-A-G | ** | |||||||
13485405-G-C | 11329729-G-C | ** | |||||||
13485460-G-A | 11329784-G-A | ** | |||||||
13485464-A-T | 11329788-A-T | ** | |||||||
13485473-T-A | 11329797-T-A | ** | |||||||
13485492-C-G | 11329816-C-G | ** | |||||||
13485496-G-T | 11329820-G-T | ** | |||||||
13485517-T-A | 11329841-T-A | ** | |||||||
13522032-C-T | 11366356-C-T | ** | |||||||
13522051-G-C | 11366375-G-C | ** | |||||||
13523488-T-A | 11367812-T-A | ** | |||||||
13604355-C-A | 11448679-C-A | ** | |||||||
13632013-T-G | 11476337-T-G | ** | |||||||
13643552-T-A | 11487876-T-A | ** | |||||||
13671500-C-A | 11515824-C-A | ** | |||||||
13705399-T-G | 11549723-T-G | ** | |||||||
13708978-T-G | 11553302-T-G | ** | |||||||
13709315-C-A | 11553639-C-A | ** | |||||||
13859476-A-C | 11738770-A-C | ** | |||||||
13859591-A-T | 11738885-A-T | ** | |||||||
13861037-A-G | 11740331-A-G | ** | |||||||
13896889-A-G | 11776183-A-G | ** | |||||||
13935526-T-C | 11814820-T-C | ** | |||||||
13935536-T-A | 11814830-T-A | ** | |||||||
13935540-A-T | 11814834-A-T | ** | |||||||
13935545-TG-T | 11814839-TG-T | ** | |||||||
13960508-G-A | 11839802-G-A | ** | |||||||
13975934-A-G | 11855228-A-G | ** | |||||||
13975935-T-A | 11855229-T-A | ** | |||||||
13976452-G-A | 11855746-G-A | ** | |||||||
14046523-T-A | 11925817-T-A | ** | |||||||
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21935185-T-C | 19773299-T-C | ** | |||||||
21935195-A-T | 19773309-A-T | ** | |||||||
21963667-A-G | 19801781-A-G | ** | |||||||
21983993-A-T | 19822107-A-T | ** | |||||||
21984078-A-T | 19822192-A-T | ** | |||||||
21984089-A-C | 19822203-A-C | ** | |||||||
22013270-A-T | 19851384-A-T | ** | |||||||
22073951-T-C | 19912065-T-C | ** | |||||||
22076977-G-T | 19915091-G-T | ** | |||||||
22091131-T-G | 19929245-T-G | ** | |||||||
22122217-G-T | 19960331-G-T | ** | |||||||
22146354-C-A | 19984468-C-A | ** | |||||||
22149770-A-C | 19987884-A-C | ** | |||||||
22166593-G-A | 20004707-G-A | ** | |||||||
22181842-A-T | 20019956-A-T | ** | |||||||
22269689-C-A | 20107803-C-A | DYZ19 | ** | ||||||
22286715-T-A | 20124829-T-A | DYZ19 | ** | ||||||
22296461-A-T | 20134575-A-T | DYZ19 | ** | ||||||
22296481-G-A | 20134595-G-A | DYZ19 | ** | ||||||
22296484-C-T | 20134598-C-T | DYZ19 | ** | ||||||
22296493-T-C | 20134607-T-C | DYZ19 | ** | ||||||
22296494-T-C | 20134608-T-C | DYZ19 | ** | ||||||
22296496-C-G | 20134610-C-G | DYZ19 | ** | ||||||
22296517-C-T | 20134631-C-T | DYZ19 | ** | ||||||
22296528-C-T | 20134642-C-T | DYZ19 | ** | ||||||
22296532-T-A | 20134646-T-A | DYZ19 | ** | ||||||
22541023-G-C | 20379137-G-C | ** | |||||||
22550002-G-C | 20388116-G-C | ** | |||||||
22732754-C-A | 20570868-C-A | ** | |||||||
22732771-A-C | 20570885-A-C | ** | |||||||
22810072-C-A | 20648186-C-A | ** | |||||||
22829603-C-A | 20667717-C-A | ** | |||||||
22893331-T-G | 20731445-T-G | ** | |||||||
22901927-A-C | 20740041-A-C | ** | |||||||
22954594-A-G | 20792708-A-G | ** | |||||||
23036828-C-A | 20874942-C-A | ** | |||||||
23046079-C-G | 20884193-C-G | ** | |||||||
23058561-T-C | 20896675-T-C | ** | |||||||
23104061-T-C | 20942175-T-C | ** | |||||||
23145892-T-G | 20984006-T-G | ** | |||||||
23255213-G-C | 21093327-G-C | ** | |||||||
23255913-G-A | 21094027-G-A | ** | |||||||
23255937-A-C | 21094051-A-C | ** | |||||||
23261574-T-A | 21099688-T-A | ** | |||||||
23269452-C-A | 21107566-C-A | ** | |||||||
23305945-T-C | 21144059-T-C | ** | |||||||
23305952-A-T | 21144066-A-T | ** | |||||||
23398212-T-A | 21236326-T-A | ** | |||||||
23419219-T-A | 21257333-T-A | ** | |||||||
23442806-C-A | 21280920-C-A | ** | |||||||
23465889-G-T | 21304003-G-T | ** | |||||||
23723522-A-T | 21561636-A-T | ** | |||||||
23881765-G-T | 21719879-G-T | ** | |||||||
24017409-T-TG | 21871262-T-TG | ** | |||||||
24134179-C-T | 21988032-C-T | P3_b1 | ** | ||||||
24206035-A-C | 22059888-A-C | P3_b1 | ** | ||||||
24344108-G-A | 22197961-G-A | P3_t1 | ** | ||||||
24517981-A-G | 22371834-A-G | ** | |||||||
24517983-A-G | 22371836-A-G | ** | |||||||
24517984-A-T | 22371837-A-T | ** | |||||||
24627828-TG-T | 22481681-TG-T | P3_t2 | ** | ||||||
24673237-T-G | 22527090-T-G | P3_b2 | ** | ||||||
24870055-A-T | 22723908-A-T | IR1_R | ** | ||||||
25042963-T-G | 22896816-T-G | g1 | ** | ||||||
25096452-A-G | 22950305-A-G | g1 | ** | ||||||
25883632-T-TA | 23737485-T-TA | P1_Y1 | ** | ||||||
25886978-C-G | 23740831-C-G | P1_Y1 | ** | ||||||
25886995-C-A | 23740848-C-A | P1_Y1 | ** | ||||||
25887014-T-G | 23740867-T-G | P1_Y1 | ** | ||||||
25887016-T-A | 23740869-T-A | P1_Y1 | ** | ||||||
25887025-T-A | 23740878-T-A | P1_Y1 | ** | ||||||
25887029-C-G | 23740882-C-G | P1_Y1 | ** | ||||||
25887039-C-A | 23740892-C-A | P1_Y1 | ** | ||||||
25887041-T-G | 23740894-T-G | P1_Y1 | ** | ||||||
25887055-A-C | 23740908-A-C | P1_Y1 | ** | ||||||
25918949-A-C | 23772802-A-C | P1_Y1 | ** | ||||||
25931441-C-G | 23785294-C-G | P1_Y1 | ** | ||||||
25934552-T-G | 23788405-T-G | P1_Y1 | ** | ||||||
25934554-C-T | 23788407-C-T | P1_Y1 | ** | ||||||
25934557-C-T | 23788410-C-T | P1_Y1 | ** | ||||||
25934562-C-T | 23788415-C-T | P1_Y1 | ** | ||||||
25934567-A-T | 23788420-A-T | P1_Y1 | ** | ||||||
25934577-T-C | 23788430-T-C | P1_Y1 | ** | ||||||
25934585-T-TA | 23788438-T-TA | P1_Y1 | ** | ||||||
25936920-G-A | 23790773-G-A | P1_Y1 | ** | ||||||
25936933-A-G | 23790786-A-G | P1_Y1 | ** | ||||||
25936937-A-C | 23790790-A-C | P1_Y1 | ** | ||||||
25936939-G-C | 23790792-G-C | P1_Y1 | ** | ||||||
25936950-G-C | 23790803-G-C | P1_Y1 | ** | ||||||
25936962-G-C | 23790815-G-C | P1_Y1 | ** | ||||||
25936972-C-T | 23790825-C-T | P1_Y1 | ** | ||||||
25936975-G-T | 23790828-G-T | P1_Y1 | ** | ||||||
25936994-G-T | 23790847-G-T | P1_Y1 | ** | ||||||
25937004-T-C | 23790857-T-C | P1_Y1 | ** | ||||||
25937013-G-C | 23790866-G-C | P1_Y1 | ** | ||||||
25937014-T-A | 23790867-T-A | P1_Y1 | ** | ||||||
25937020-C-T | 23790873-C-T | P1_Y1 | ** | ||||||
25937027-G-C | 23790880-G-C | P1_Y1 | ** | ||||||
25937029-A-C | 23790882-A-C | P1_Y1 | ** | ||||||
25937048-A-T | 23790901-A-T | P1_Y1 | ** | ||||||
25972278-A-T | 23826131-A-T | P1_Y1 | ** | ||||||
26043744-A-AG | 23897597-A-AG | P1_Y1 | ** | ||||||
26043803-A-G | 23897656-A-G | P1_Y1 | ** | ||||||
26043814-G-A | 23897667-G-A | P1_Y1 | ** | ||||||
26117879-A-G | 23971732-A-G | P1_Y1 | ** | ||||||
26134324-C-G | 23988177-C-G | P1_Y1 | ** | ||||||
26134367-C-T | 23988220-C-T | P1_Y1 | ** | ||||||
26222512-T-TA | 24076365-T-TA | P1_Y1 | ** | ||||||
26228671-T-G | 24082524-T-G | P1_Y1 | ** | ||||||
26228678-T-C | 24082531-T-C | P1_Y1 | ** | ||||||
26234157-A-ACCCCCCCCC | 24088010-A-ACCCCCCCCC | P1_Y1 | ** | ||||||
26234157-AAAAATGATG-A | 24088010-AAAAATGATG-A | P1_Y1 | ** | ||||||
26328697-C-A | 24182550-C-A | P1_Y1 | ** | ||||||
26400449-T-C | 24254302-T-C | P1_Y1 | ** | ||||||
26453056-T-A | 24306909-T-A | P1_Y1 | ** | ||||||
26453063-T-A | 24306916-T-A | P1_Y1 | ** | ||||||
26453066-T-G | 24306919-T-G | P1_Y1 | ** | ||||||
26453070-T-C | 24306923-T-C | P1_Y1 | ** | ||||||
26453076-T-TC | 24306929-T-TC | P1_Y1 | ** | ||||||
26453095-T-C | 24306948-T-C | P1_Y1 | ** | ||||||
26453099-G-T | 24306952-G-T | P1_Y1 | ** | ||||||
27022375-G-C | 24876228-G-C | P1_r4 | ** | ||||||
27607701-T-G | 25461554-T-G | P1_Y2 | ** | ||||||
27641451-T-G | 25495304-T-G | P1_Y2 | ** | ||||||
27837790-TCC-T | 25691643-TCC-T | P1_Y2 | ** | ||||||
27837794-TCC-T | 25691647-TCC-T | P1_Y2 | ** | ||||||
27837800-C-G | 25691653-C-G | P1_Y2 | ** | ||||||
27861860-G-T | 25715713-G-T | P1_Y2 | ** | ||||||
27904476-CTTT-C | 25758329-CTTT-C | P1_Y2 | 11×T | ** | |||||
27904494-C-A | 25758347-C-A | P1_Y2 | ** | ||||||
28029150-A-G | 25883003-A-G | P1_Y2 | ** | ||||||
28029171-T-A | 25883024-T-A | P1_Y2 | ** | ||||||
28029180-C-G | 25883033-C-G | P1_Y2 | ** | ||||||
28029185-T-G | 25883038-T-G | P1_Y2 | ** | ||||||
28029194-T-A | 25883047-T-A | P1_Y2 | ** | ||||||
28029196-C-A | 25883049-C-A | P1_Y2 | ** | ||||||
28029204-A-T | 25883057-A-T | P1_Y2 | ** | ||||||
28029218-T-A | 25883071-T-A | P1_Y2 | ** | ||||||
28029223-A-G | 25883076-A-G | P1_Y2 | ** | ||||||
28029226-T-G | 25883079-T-G | P1_Y2 | ** | ||||||
28029236-T-A | 25883089-T-A | P1_Y2 | ** | ||||||
28029241-G-A | 25883094-G-A | P1_Y2 | ** | ||||||
28031772-A-G | 25885625-A-G | P1_Y2 | ** | ||||||
28390744-C-T | 26244597-C-T | P1_gr2 | ** | ||||||
28461986-G-A | 26315839-G-A | ** | |||||||
28497983-C-T | 26351836-C-T | ** | |||||||
28516404-G-T | 26370257-G-T | ** | |||||||
28518964-A-T | 26372817-A-T | ** | |||||||
28534356-A-C | 26388209-A-C | ** | |||||||
28551613-G-C | 26405466-G-C | ** | |||||||
28632782-T-A | 26486635-T-A | ** | |||||||
28656181-T-A | 26510034-T-A | ** | |||||||
28670199-A-T | 26524052-A-T | ** | |||||||
28673098-C-A | 26526951-C-A | ** | |||||||
28674803-C-A | 26528656-C-A | ** | |||||||
28711538-A-G | 26565391-A-G | ** | |||||||
28732082-G-T | 26585935-G-T | ** | |||||||
28765513-C-A | 26619366-C-A | ** | |||||||
28808576-A-T | 26662429-A-T | ** | |||||||
56734802-C-T | ** | ||||||||
56841838-A-G | ** | ||||||||
56851619-A-T | ** | ||||||||
56861700-G-T | ** | ||||||||
13447314-TTCCACTCCACTCCAC-T,TTCCACTCCACTCCACTCCAC | 11291638-TTCCACTCCACTCCAC-T,TTCCACTCCACTCCACTCCAC | 8×TCCAC | *** | ||||||
9945863-G-A | 10108254-G-A | 16×A | *** | ||||||
9954392-C-T | 10116783-C-T | *** | |||||||
17196647-AAG-A | 15084767-AAG-A | *** | |||||||
13706529-A-G | 11550853-A-G | *** | |||||||
26905489-C-A | 24759342-C-A | P1_r3 | *** | ||||||
9952220-A-C | 10114611-A-C | *** | |||||||
22427448-G-T | 20265562-G-T | DYZ19 | *** | ||||||
22441818-TG-T | 20279932-TG-T | DYZ19 | *** | ||||||
24146914-A-G | 22000767-A-G | P3_b1 | *** | ||||||
24208366-G-A | 22062219-G-A | P3_b1 | *** | ||||||
24968790-C-T | 22822643-C-T | g1 | *** | ||||||
25262637-G-A | 23116490-G-A | P2_r1 | *** | ||||||
25394270-CTCT-C | 23248123-CTCT-C | P2_r2 | *** | ||||||
7233297-TAAAA-T | 7365256-TAAAA-T | 17×A | *** | ||||||
14402383-C-A | 12281680-C-A | *** | |||||||
56832700-A-ACTGCACTCCT | *** | ||||||||
15604353-TC-T | 13492473-TC-T | *** | |||||||
22189263-C-A | 20027377-C-A | *** | |||||||
15750522-G-T | 13638642-G-T | *** | |||||||
3790878-GTATA-G,GTA | 3922837-GTATA-G,GTA | 21×TA | *** | ||||||
3790949-G-T | 3922908-G-T | *** | |||||||
4781002-G-T | 4912961-G-T | *** | |||||||
5059696-G-T | 5191655-G-T | *** | |||||||
6028521-C-A | 6160480-C-A | *** | |||||||
6445018-G-A | 6576977-G-A | *** | |||||||
6744408-C-A | 6876367-C-A | *** | |||||||
6922760-T-C | 7054719-T-C | *** | |||||||
7315310-C-A | 7447269-C-A | *** | |||||||
8399137-G-C | 8531096-G-C | *** | |||||||
8399148-C-A | 8531107-C-A | *** | |||||||
9798062-A-T | 9960453-A-T | *** | |||||||
9926374-C-G | 10088765-C-G | *** | |||||||
9945861-C-A | 10108252-C-A | *** | |||||||
10754930-TCCTC-T,TCCAC | *** | ||||||||
10796806-C-A | *** | ||||||||
10888002-C-T | *** | ||||||||
10999875-AT-A | *** | ||||||||
13463752-T-A | 11308076-T-A | *** | |||||||
13485609-T-C | 11329933-T-C | *** | |||||||
11650940-T-A | *** | ||||||||
11650949-A-G | *** | ||||||||
14566770-C-A | 12454970-C-A | 13×A | *** | ||||||
14780796-C-A | 12668866-C-A | *** | |||||||
14825147-A-T | 12713214-A-T | *** | |||||||
15982142-T-C | 13870262-T-C | *** | |||||||
16282397-TC-T | 14170517-TC-T | *** | |||||||
17547728-C-T | 15435848-C-T | *** | |||||||
18165126-CAAA-C | 16053246-CAAA-C | 13×A | *** | ||||||
18961611-TA-T | 16849731-TA-T | *** | |||||||
19330390-A-C | 17218510-A-C | *** | |||||||
21240485-C-A | 19078599-C-A | *** | |||||||
21267677-G-C | 19105791-G-C | *** | |||||||
21642856-ATG-A,ATGTG | 19480970-ATG-A,ATGTG | 16×TG | *** | ||||||
21663262-TAA-T,TA | 19501376-TAA-T,TA | 15×A | *** | ||||||
22023229-A-T | 19861343-A-T | *** | |||||||
22189262-T-C | 20027376-T-C | *** | |||||||
22200355-CAAAA-C | 20038469-CAAAA-C | 13×A | *** | ||||||
22775192-T-C | 20613306-T-C | *** | |||||||
26565651-C-A | 24419504-C-A | P1_g2 | *** | ||||||
28657118-C-A | 26510971-C-A | *** | |||||||
28798706-A-C | 26652559-A-C | *** | |||||||
56826580-TTCTATTCCATTCGATTCTATTCCATTCAATTCTATTCCATTCGAT-T,TTCTGTCCCATTCGATTCCATTCCATTCGATTACATTCCATTCGAG | *** | ||||||||
56832154-GT-G | *** | ||||||||
56837197-G-T | *** | ||||||||
56850811-G-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.