McCarthy
FTDNA: 566152, BigY2: 566152Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 566152 | BigY2 566152 |
---|---|---|---|---|---|---|---|---|---|
13451271-C-A | 11295595-C-A | A* | |||||||
19836871-T-A | 17724991-T-A | P5_Prx | A* | ||||||
9374944-C-T | 9537335-C-T | A16516 | Y | + | + | ||||
17661404-C-A | 15549524-C-A | A16517 | Y | Y | + | + | |||
17924222-C-A | 15812342-C-A | A16518 | Y | Y | + | + | |||
21237730-CACAT-C | 19075844-CACAT-C | + | + | ||||||
22464169-A-C | 20302283-A-C | BY221265 | DYZ19 | *** | + | ||||
58979082-A-T | 56832935-A-T | ** | |||||||
14683488-A-C | 12571554-A-C | CTS3143 | ** | ||||||
15952700-A-G | 13840820-A-G | ** | |||||||
19496199-A-AT | 17384319-A-AT | 9×T | ** | ||||||
59026308-G-A | 56880161-G-A | ** | |||||||
4728375-G-T | 4860334-G-T | ** | |||||||
18636633-G-T | 16524753-G-T | ** | |||||||
10932942-CTCAAT-C | ** | ||||||||
6816541-C-T | 6948500-C-T | ** | |||||||
21134920-A-G | 18973034-A-G | ** | |||||||
10764588-T-G | ** | ||||||||
11013956-T-A | ** | ||||||||
14042647-G-T | 11921941-G-T | ** | |||||||
19847692-C-T | 17735812-C-T | P5_Prx | ** | ||||||
26228718-AGA-T | 24082571-AGA-T | P1_Y1 | ** | ||||||
25996166-A-AG | 23850019-A-AG | P1_Y1 | ** | ||||||
14427432-C-A | 12306707-C-A | ** | |||||||
7723948-CTTTTTT-C | 7855907-CTTTTTT-C | 25×T | ** | ||||||
2682778-C-A | 2814737-C-A | ** | |||||||
13486557-G-T | 11330881-G-T | ** | |||||||
20028102-G-A | 17916222-G-A | P5_Prx | ** | ||||||
6949-C-T | ** | ||||||||
21583839-C-A | 19421953-C-A | ** | |||||||
8016968-C-T | 8148927-C-T | ** | |||||||
21220270-C-T | 19058384-C-T | ** | |||||||
3833626-C-G | 3965585-C-G | ** | |||||||
10759889-G-C | ** | ||||||||
10925553-C-A | ** | ||||||||
10928538-C-A | ** | ||||||||
10651587-C-CCATTT | ** | ||||||||
14806081-C-A | 12694152-C-A | ** | |||||||
10793978-T-TCCCAA | ** | ||||||||
21104437-TAAAAA-T | 18942551-TAAAAA-T | 22×A | ** | ||||||
14427445-T-A | 12306720-T-A | ** | |||||||
2981201-G-T | 3113160-G-T | ** | |||||||
10793891-A-C | ** | ||||||||
19272198-C-T | 17160318-C-T | ** | |||||||
28091462-AC-A | 25945315-AC-A | P1_Y2 | ** | ||||||
14549515-C-A | 12437716-C-A | ** | |||||||
3950834-C-A | 4082793-C-A | ** | |||||||
10925533-C-T | ** | ||||||||
7033231-C-A | 7165190-C-A | ** | |||||||
10763153-T-TTCCATTCCACTCCACTCCAC | ** | ||||||||
10770618-C-T | ** | ||||||||
14427444-C-T | 12306719-C-T | ** | |||||||
10932928-T-A | ** | ||||||||
2948757-C-A | 3080716-C-A | ** | |||||||
19739343-C-CAAT | 17627463-C-CAAT | P5_Prx | ** | ||||||
26248080-T-C | 24101933-T-C | P1_Y1 | ** | ||||||
26248084-T-C | 24101937-T-C | P1_Y1 | ** | ||||||
28742527-G-T | 26596380-G-T | ** | |||||||
27971722-CT-C | 25825575-CT-C | P1_Y2 | ** | ||||||
16571830-C-A | 14459950-C-A | ** | |||||||
10841884-G-T | ** | ||||||||
16180226-C-A | 14068346-C-A | FTB7145 | ** | ||||||
6992585-C-T | 7124544-C-T | ** | |||||||
28441891-C-A | 26295744-C-A | P1_gr2 | ** | ||||||
24884214-A-C | 22738067-A-C | g1 | ** | ||||||
10775402-T-A | ** | ||||||||
16146486-AG-A | 14034606-AG-A | P8_Dst | ** | ||||||
18465431-G-T | 16353551-G-T | P6_Dst | ** | ||||||
4908697-C-A | 5040656-C-A | FTA4217 | ** | ||||||
24252249-A-AG | 22106102-A-AG | P3_b1 | ** | ||||||
22970264-G-A | 20808378-G-A | ** | |||||||
10801737-C-A | ** | ||||||||
21700459-C-T | 19538573-C-T | ** | |||||||
7033239-AC-A | 7165198-AC-A | ** | |||||||
7381869-A-G | 7513828-A-G | ** | |||||||
8016967-A-T | 8148926-A-T | ** | |||||||
23126208-C-A | 20964322-C-A | ** | |||||||
9761264-C-A | 9923655-C-A | ** | |||||||
27952091-GTATATATATATA-G | 25805944-GTATATATATATA-G | P1_Y2 | 19×TA | ** | |||||
6816538-T-A | 6948497-T-A | ** | |||||||
14639045-A-G | 12527114-A-G | ** | |||||||
14919386-C-A | 12807451-C-A | ** | |||||||
21073280-C-A | 18911394-C-A | ** | |||||||
14196344-G-A | 12075638-G-A | ** | |||||||
18969170-G-T | 16857290-G-T | ** | |||||||
25970735-TC-T | 23824588-TC-T | P1_Y1 | ** | ||||||
9140088-C-A | 9302479-C-A | ** | |||||||
11009085-A-T | ** | ||||||||
11009086-T-C | ** | ||||||||
13472097-G-T | 11316421-G-T | ** | |||||||
11646261-T-TG | DYZ17 | ** | |||||||
19597198-ATTAT-A | 17485318-ATTAT-A | P5_Prx | ** | ||||||
27971709-T-G | 25825562-T-G | P1_Y2 | ** | ||||||
15262450-C-A | 13150534-C-A | ** | |||||||
10678605-C-G | ** | ||||||||
14609682-A-G | 12497884-A-G | ** | |||||||
14609686-G-A | 12497888-G-A | ** | |||||||
10890216-C-A | ** | ||||||||
19847658-TTTTTGG-T | 17735778-TTTTTGG-T | P5_Prx | ** | ||||||
2649801-TC-A | 2781760-TC-A | ** | |||||||
20050978-T-G | 17939098-T-G | P5_Prx | ** | ||||||
17946957-G-T | 15835077-G-T | ** | |||||||
11024740-T-C | ** | ||||||||
14582403-A-G | 12470603-A-G | ** | |||||||
14427457-G-A | 12306732-G-A | ** | |||||||
56724770-A-T | ** | ||||||||
10759874-A-G | ** | ||||||||
10770151-C-A | ** | ||||||||
14196346-C-A | 12075640-C-A | ** | |||||||
7321465-CAAA-C | 7453424-CAAA-C | 13×A | ** | ||||||
11009046-C-G | ** | ||||||||
20334982-G-T | 18173096-G-T | P5_Dst | ** | ||||||
15171268-G-T | 13059354-G-T | ** | |||||||
11004440-C-A | ** | ||||||||
10793888-T-C | ** | ||||||||
11024718-T-C | ** | ||||||||
14802-T-G | ** | ||||||||
15556851-C-A | 13444971-C-A | ** | |||||||
13571665-A-ATTT | 11415989-A-ATTT | 17×T | ** | ||||||
18125527-C-A | 16013647-C-A | ** | |||||||
6179641-G-C | 6311600-G-C | IR3_Dst | ** | ||||||
16196223-C-A | 14084343-C-A | ** | |||||||
27397032-G-T | 25250885-G-T | P1_g3 | ** | ||||||
21134922-C-G | 18973036-C-G | ** | |||||||
16619886-G-A | 14508006-G-A | ** | |||||||
10759888-C-T | ** | ||||||||
14609672-A-G | 12497874-A-G | ** | |||||||
17831307-G-C | 15719427-G-C | ** | |||||||
16146499-G-A | 14034619-G-A | P8_Dst | ** | ||||||
23807575-T-C | 21645689-T-C | ** | |||||||
10924494-T-C | ** | ||||||||
17653873-C-A | 15541993-C-A | ** | |||||||
15262452-T-A | 13150536-T-A | ** | |||||||
14023028-T-G | 11902322-T-G | ** | |||||||
8403272-CAAAAAAAAAAAAAA-C | 8535231-CAAAAAAAAAAAAAA-C | 28×A | ** | ||||||
24446804-C-A | 22300657-C-A | ** | |||||||
10925532-T-A | ** | ||||||||
16938188-C-A | 14826308-C-A | ** | |||||||
17684487-C-T | 15572607-C-T | ** | |||||||
10775463-C-T | ** | ||||||||
24447029-TAA-T | 22300882-TAA-T | 10×A | ** | ||||||
17946943-TGA-T | 15835063-TGA-T | ** | |||||||
28560824-C-T | 26414677-C-T | ** | |||||||
23058755-C-A | 20896869-C-A | ** | |||||||
20440392-T-TTCG | 18278506-T-TTCG | P5_Dst | 13×TTG | ** | |||||
18682564-C-A | 16570684-C-A | ** | |||||||
10770539-A-C | ** | ||||||||
10783843-C-A | ** | ||||||||
14554318-C-A | 12442519-C-A | ** | |||||||
25524727-G-A | 23378580-G-A | P1_gr1 | ** | ||||||
7044567-G-T | 7176526-G-T | ** | |||||||
11004439-C-A | ** | ||||||||
6179493-G-T | 6311452-G-T | IR3_Dst | ** | ||||||
6282261-A-AG | 6414220-A-AG | IR3_Dst | ** | ||||||
2759526-A-G | 2891485-A-G | ** | |||||||
2759536-A-C | 2891495-A-C | ** | |||||||
2806142-C-T | 2938101-C-T | ** | |||||||
2895101-T-C | 3027060-T-C | ** | |||||||
2905853-TTTTC-T | 3037812-TTTTC-T | ** | |||||||
2909558-T-C | 3041517-T-C | ** | |||||||
3060349-C-A | 3192308-C-A | ** | |||||||
3178852-G-A | 3310811-G-A | ** | |||||||
3231942-C-T | 3363901-C-T | ** | |||||||
3256313-G-T | 3388272-G-T | ** | |||||||
3274319-T-A | 3406278-T-A | ** | |||||||
3452766-T-G | 3584725-T-G | ** | |||||||
3452770-T-A | 3584729-T-A | ** | |||||||
3467072-C-A | 3599031-C-A | ** | |||||||
3467176-A-G | 3599135-A-G | ** | |||||||
3622168-C-A | 3754127-C-A | ** | |||||||
3847446-G-C | 3979405-G-C | ** | |||||||
3851801-A-G | 3983760-A-G | ** | |||||||
3942905-G-T | 4074864-G-T | ** | |||||||
4087684-C-T | 4219643-C-T | ** | |||||||
4250807-G-T | 4382766-G-T | ** | |||||||
4270411-C-A | 4402370-C-A | FT85857 | ** | ||||||
4512040-C-A | 4643999-C-A | ** | |||||||
4523740-C-A | 4655699-C-A | ** | |||||||
4769490-A-T | 4901449-A-T | ** | |||||||
4900312-C-A | 5032271-C-A | ** | |||||||
4927242-C-G | 5059201-C-G | ** | |||||||
4969288-A-G | 5101247-A-G | ** | |||||||
5021865-G-T | 5153824-G-T | ** | |||||||
5021924-G-T | 5153883-G-T | ** | |||||||
5059563-C-A | 5191522-C-A | ** | |||||||
5199500-C-A | 5331459-C-A | ** | |||||||
5242357-A-G | 5374316-A-G | ** | |||||||
5309559-C-A | 5441518-C-A | ** | |||||||
5394879-G-A | 5526838-G-A | ** | |||||||
5560046-GC-G | 5692005-GC-G | ** | |||||||
5755353-A-T | 5887312-A-T | ** | |||||||
5761423-C-T | 5893382-C-T | ** | |||||||
5815616-ATG-A | 5947575-ATG-A | ** | |||||||
5815619-A-AC | 5947578-A-AC | ** | |||||||
5935423-A-G | 6067382-A-G | ** | |||||||
6092725-C-G | 6224684-C-G | ** | |||||||
6177475-A-G | 6309434-A-G | IR3_Dst | ** | ||||||
6282244-A-T | 6414203-A-T | IR3_Dst | ** | ||||||
6284897-T-C | 6416856-T-C | IR3_Dst | ** | ||||||
6339127-T-TCG | 6471086-T-TCG | IR3_Dst | 10×CA | ** | |||||
6446645-A-G | 6578604-A-G | ** | |||||||
6464735-T-C | 6596694-T-C | ** | |||||||
6664482-G-T | 6796441-G-T | ** | |||||||
6682215-C-A | 6814174-C-A | ** | |||||||
6714676-G-C | 6846635-G-C | ** | |||||||
6790261-G-A | 6922220-G-A | ** | |||||||
6922947-C-A | 7054906-C-A | ** | |||||||
6975812-T-C | 7107771-T-C | ** | |||||||
6983639-G-A | 7115598-G-A | ** | |||||||
6995137-A-G | 7127096-A-G | ** | |||||||
7000520-A-G | 7132479-A-G | ** | |||||||
7043868-T-C | 7175827-T-C | ** | |||||||
7044015-C-T | 7175974-C-T | ** | |||||||
7048490-T-G | 7180449-T-G | ** | |||||||
7048657-T-C | 7180616-T-C | ** | |||||||
7099144-T-A | 7231103-T-A | ** | |||||||
7110917-AT-A | 7242876-AT-A | ** | |||||||
7110960-C-A | 7242919-C-A | ** | |||||||
7115446-G-A | 7247405-G-A | ** | |||||||
7117110-C-A | 7249069-C-A | ** | |||||||
7145711-C-A | 7277670-C-A | ** | |||||||
7169927-C-T | 7301886-C-T | ** | |||||||
7180107-A-T | 7312066-A-T | FT384156 | ** | ||||||
7228404-G-T | 7360363-G-T | ** | |||||||
7255359-G-T | 7387318-G-T | ** | |||||||
7257267-T-G | 7389226-T-G | ** | |||||||
7285447-T-A | 7417406-T-A | ** | |||||||
7320351-A-T | 7452310-A-T | ** | |||||||
7341569-G-A | 7473528-G-A | ** | |||||||
7378462-T-C | 7510421-T-C | ** | |||||||
7407310-G-A | 7539269-G-A | ** | |||||||
7623607-T-C | 7755566-T-C | ** | |||||||
7996001-C-A | 8127960-C-A | ** | |||||||
8067324-G-T | 8199283-G-T | ** | |||||||
8112391-C-A | 8244350-C-A | ** | |||||||
8293917-C-T | 8425876-C-T | ** | |||||||
8296891-T-A | 8428850-T-A | ** | |||||||
8501494-T-A | 8633453-T-A | ** | |||||||
9123425-C-A | ** | ||||||||
9125367-T-A | ** | ||||||||
9030304-G-T | 9192695-G-T | ** | |||||||
9048090-C-A | 9210481-C-A | ** | |||||||
9068871-G-T | 9231262-G-T | ** | |||||||
9140011-C-T | 9302402-C-T | ** | |||||||
9221697-A-G | 9384088-A-G | ** | |||||||
9509667-C-A | 9672058-C-A | ** | |||||||
9764134-T-C | 9926525-T-C | ** | |||||||
9928209-A-C | 10090600-A-C | ** | |||||||
10656409-C-A | ** | ||||||||
10661273-A-G | ** | ||||||||
10661974-T-C | ** | ||||||||
10666860-A-C | ** | ||||||||
10672157-T-A | ** | ||||||||
10678599-A-C | ** | ||||||||
10744839-A-C | ** | ||||||||
10744861-T-C | ** | ||||||||
10753138-C-A | ** | ||||||||
10757490-C-A | ** | ||||||||
10759881-A-T | ** | ||||||||
10759890-C-T | ** | ||||||||
10775398-T-C | ** | ||||||||
10775436-CA-C | ** | ||||||||
10775440-T-TCCGGCC | ** | ||||||||
10775453-T-C | ** | ||||||||
10775462-A-T | ** | ||||||||
10775465-C-T | ** | ||||||||
10786234-T-C | ** | ||||||||
10801746-C-CGGGATGATT | ** | ||||||||
10801748-A-AT | ** | ||||||||
10808396-C-A | ** | ||||||||
10819828-T-C | ** | ||||||||
10836454-C-A | ** | ||||||||
10836928-G-T | ** | ||||||||
10841485-T-C | ** | ||||||||
10881810-C-G | ** | ||||||||
10881897-C-G | ** | ||||||||
10899904-G-T | ** | ||||||||
10920838-C-A | ** | ||||||||
10932954-C-A | ** | ||||||||
10956415-A-T | ** | ||||||||
11004415-C-G | ** | ||||||||
11007496-T-C | ** | ||||||||
11009065-A-T | ** | ||||||||
11009079-C-T | ** | ||||||||
11009461-C-T | FT393538 | ** | |||||||
11014187-T-C | ** | ||||||||
11014190-G-C | ** | ||||||||
11014194-T-C | ** | ||||||||
11019238-G-T | ** | ||||||||
11024719-A-AC | ** | ||||||||
11024721-A-C | ** | ||||||||
11029315-C-T | ** | ||||||||
11037961-T-A | ** | ||||||||
13207984-G-A | 11052308-G-A | ** | |||||||
13222137-A-G | 11066461-A-G | ** | |||||||
13226875-T-A | 11071199-T-A | ** | |||||||
13298245-C-A | 11142569-C-A | ** | |||||||
13328554-C-A | 11172878-C-A | ** | |||||||
13362055-C-A | 11206379-C-A | ** | |||||||
13362059-C-A | 11206383-C-A | ** | |||||||
13445949-G-T | 11290273-G-T | ** | |||||||
13468081-T-G | 11312405-T-G | ** | |||||||
13475462-A-T | 11319786-A-T | ** | |||||||
13486603-C-G | 11330927-C-G | ** | |||||||
13511963-G-T | 11356287-G-T | ** | |||||||
13711408-C-A | 11555732-C-A | DYZ17 | ** | ||||||
11659685-T-G | DYZ17 | ** | |||||||
11670779-A-T | DYZ17 | ** | |||||||
13891572-TA-T | 11770866-TA-T | ** | |||||||
13919263-G-T | 11798557-G-T | ** | |||||||
13935725-C-A | 11815019-C-A | ** | |||||||
13958447-C-G | 11837741-C-G | ** | |||||||
13960871-G-A | 11840165-G-A | ** | |||||||
13963883-A-T | 11843177-A-T | ** | |||||||
14042640-A-G | 11921934-A-G | ** | |||||||
14059327-T-G | 11938621-T-G | ** | |||||||
14146943-C-A | 12026237-C-A | ** | |||||||
14160241-A-C | 12039535-A-C | ** | |||||||
14160286-C-A | 12039580-C-A | ** | |||||||
14194773-C-T | 12074067-C-T | ** | |||||||
14195155-G-A | 12074449-G-A | ** | |||||||
14198224-C-A | 12077518-C-A | ** | |||||||
14212055-C-A | 12091349-C-A | ** | |||||||
14213183-G-A | 12092477-G-A | ** | |||||||
14378016-A-C | 12257312-A-C | ** | |||||||
14445002-T-A | 12324275-T-A | ** | |||||||
14588937-T-C | 12477137-T-C | ** | |||||||
14609613-A-G | 12497815-A-G | ** | |||||||
14609627-A-G | 12497829-A-G | ** | |||||||
14609634-CAA-C | 12497836-CAA-C | 9×A | ** | ||||||
14609659-G-C | 12497861-G-C | ** | |||||||
14609688-G-C | 12497890-G-C | ** | |||||||
14658433-C-A | 12546498-C-A | ** | |||||||
14685942-C-A | 12574008-C-A | ** | |||||||
14719604-C-T | 12607672-C-T | ** | |||||||
14768439-A-T | 12656508-A-T | ** | |||||||
14786511-C-A | 12674581-C-A | ** | |||||||
14844459-G-A | 12732525-G-A | ** | |||||||
14912854-A-T | 12800921-A-T | ** | |||||||
15262454-T-A | 13150538-T-A | ** | |||||||
15379240-C-T | 13267360-C-T | ** | |||||||
15475176-C-A | 13363296-C-A | ** | |||||||
15533071-T-G | 13421191-T-G | ** | |||||||
15600066-A-G | 13488186-A-G | ** | |||||||
15600069-T-G | 13488189-T-G | ** | |||||||
15616564-C-T | 13504684-C-T | ** | |||||||
15658028-A-T | 13546148-A-T | ** | |||||||
15680149-A-T | 13568269-A-T | ** | |||||||
15770540-T-C | 13658660-T-C | ** | |||||||
16002467-G-A | 13890587-G-A | ** | |||||||
16033414-G-C | 13921534-G-C | ** | |||||||
16070162-C-T | 13958282-C-T | ** | |||||||
16146503-G-A | 14034623-G-A | P8_Dst | ** | ||||||
16161034-A-T | 14049154-A-T | P8_Dst | ** | ||||||
16179674-C-A | 14067794-C-A | ** | |||||||
16270704-C-T | 14158824-C-T | ** | |||||||
16291948-AC-A | 14180068-AC-A | ** | |||||||
16291957-C-A | 14180077-C-A | ** | |||||||
16309325-A-G | 14197445-A-G | ** | |||||||
16424255-C-T | 14312375-C-T | ** | |||||||
16424532-G-A | 14312652-G-A | ** | |||||||
16450491-T-C | 14338611-T-C | ** | |||||||
16458198-C-A | 14346318-C-A | ** | |||||||
16547107-C-A | 14435227-C-A | ** | |||||||
16576972-C-A | 14465092-C-A | ** | |||||||
16590735-C-A | 14478855-C-A | ** | |||||||
16598575-G-C | 14486695-G-C | ** | |||||||
16652021-G-GC | 14540141-G-GC | ** | |||||||
16656703-A-T | 14544823-A-T | ** | |||||||
16779051-C-T | 14667171-C-T | ** | |||||||
16909246-A-C | 14797366-A-C | ** | |||||||
16938316-T-C | 14826436-T-C | ** | |||||||
17158991-TTTTG-A | 15047111-TTTTG-A | ** | |||||||
17382611-G-A | 15270731-G-A | ** | |||||||
17515397-C-A | 15403517-C-A | ** | |||||||
17779249-T-G | 15667369-T-G | ** | |||||||
17782530-A-C | 15670650-A-C | ** | |||||||
17782559-G-T | 15670679-G-T | ** | |||||||
17831297-T-C | 15719417-T-C | ** | |||||||
17831298-G-A | 15719418-G-A | ** | |||||||
17831314-C-T | 15719434-C-T | ** | |||||||
17831325-C-T | 15719445-C-T | ** | |||||||
17859082-T-G | 15747202-T-G | ** | |||||||
17915987-C-A | 15804107-C-A | ** | |||||||
18226211-A-T | 16114331-A-T | ** | |||||||
18717653-A-G | 16605773-A-G | ** | |||||||
18717657-G-A | 16605777-G-A | Y54804 | ** | ||||||
18717669-T-C | 16605789-T-C | Y102497 | ** | ||||||
18717676-G-A | 16605796-G-A | ** | |||||||
18928512-G-A | 16816632-G-A | ** | |||||||
18930716-G-A | 16818836-G-A | ** | |||||||
18964089-C-A | 16852209-C-A | ** | |||||||
19042655-G-A | 16930775-G-A | FGC46402 | ** | ||||||
19047953-C-A | 16936073-C-A | FTB64297 | ** | ||||||
19079379-G-T | 16967499-G-T | ** | |||||||
19107407-A-T | 16995527-A-T | ** | |||||||
19135326-G-T | 17023446-G-T | ** | |||||||
19137615-G-T | 17025735-G-T | ** | |||||||
19163173-T-C | 17051293-T-C | ** | |||||||
19337669-G-C | 17225789-G-C | ** | |||||||
19528510-G-A | 17416630-G-A | ** | |||||||
19531513-T-C | 17419633-T-C | ** | |||||||
19677905-C-CCTCCCCCCT | 17566025-C-CCTCCCCCCT | P5_Prx | ** | ||||||
19751277-A-G | 17639397-A-G | P5_Prx | ** | ||||||
19751408-C-A | 17639528-C-A | P5_Prx | ** | ||||||
20640913-A-T | 18479027-A-T | P4_Prx | ** | ||||||
20640931-A-AT | 18479045-A-AT | P4_Prx | ** | ||||||
20809892-T-A | 18648006-T-A | P4_Gap | ** | ||||||
20815528-A-G | 18653642-A-G | FT283735 | P4_Gap | ** | |||||
21148585-ATCT-A | 18986699-ATCT-A | ** | |||||||
21154074-A-T | 18992188-A-T | ** | |||||||
21206949-C-A | 19045063-C-A | ** | |||||||
21255945-C-A | 19094059-C-A | ** | |||||||
21262489-C-T | 19100603-C-T | ** | |||||||
21262516-T-A | 19100630-T-A | ** | |||||||
21435433-T-A | 19273547-T-A | ** | |||||||
21543114-C-A | 19381228-C-A | FGC74350 | ** | ||||||
21635250-C-A | 19473364-C-A | ** | |||||||
21677405-A-T | 19515519-A-T | ** | |||||||
21677422-G-A | 19515536-G-A | ** | |||||||
21796733-G-C | 19634847-G-C | ** | |||||||
21994063-T-A | 19832177-T-A | ** | |||||||
22123164-A-G | 19961278-A-G | ** | |||||||
22170402-C-T | 20008516-C-T | ** | |||||||
22204501-A-C | 20042615-A-C | ** | |||||||
22210566-G-C | 20048680-G-C | ** | |||||||
22257969-C-A | 20096083-C-A | DYZ19 | ** | ||||||
22619421-G-C | 20457535-G-C | ** | |||||||
22720510-C-A | 20558624-C-A | ** | |||||||
22730652-C-G | 20568766-C-G | ** | |||||||
22970280-CTCA-C | 20808394-CTCA-C | ** | |||||||
23037233-G-T | 20875347-G-T | ** | |||||||
23056151-A-C | 20894265-A-C | ** | |||||||
23126271-A-T | 20964385-A-T | ** | |||||||
23126293-C-T | 20964407-C-T | ** | |||||||
23188977-A-T | 21027091-A-T | ** | |||||||
23276642-C-A | 21114756-C-A | ** | |||||||
23345923-T-C | 21184037-T-C | ** | |||||||
23377422-G-A | 21215536-G-A | Y79777 | ** | ||||||
23438936-G-C | 21277050-G-C | ** | |||||||
23599962-A-G | 21438076-A-G | ** | |||||||
21750846-T-G | ** | ||||||||
24265853-C-CAAAA | 22119706-C-CAAAA | P3_b1 | 16×A | ** | |||||
24342497-T-A | 22196350-T-A | P3_t1 | ** | ||||||
24402379-A-G | 22256232-A-G | ** | |||||||
24421899-A-G | 22275752-A-G | ** | |||||||
25576972-G-GTC | 23430825-G-GTC | P1_gr1 | ** | ||||||
25592956-A-C | 23446809-A-C | P1_gr1 | ** | ||||||
25873667-G-A | 23727520-G-A | P1_Y1 | ** | ||||||
25885932-C-A | 23739785-C-A | P1_Y1 | ** | ||||||
26047609-A-T | 23901462-A-T | P1_Y1 | ** | ||||||
27571001-A-G | 25424854-A-G | P1_Y2 | ** | ||||||
27952114-T-C | 25805967-T-C | P1_Y2 | ** | ||||||
28030744-C-T | 25884597-C-T | P1_Y2 | ** | ||||||
28478325-T-C | 26332178-T-C | ** | |||||||
28549954-T-G | 26403807-T-G | ** | |||||||
28570371-A-C | 26424224-A-C | ** | |||||||
28570394-G-C | 26424247-G-C | ** | |||||||
28605820-G-A | 26459673-G-A | ** | |||||||
28716319-T-A | 26570172-T-A | ** | |||||||
28742537-C-T | 26596390-C-T | ** | |||||||
28773860-A-G | 26627713-A-G | ** | |||||||
28811863-A-C | 26665716-A-C | ** | |||||||
56835409-T-C | ** | ||||||||
56835411-CA-C | ** | ||||||||
56842744-T-C | ** | ||||||||
35487-G-T | ** | ||||||||
8656020-C-CA | 8787979-C-CA | BY32383 | 10×A | *** | |||||
14604590-CTTTTTTTT-C | 12492792-CTTTTTTTT-C | 21×T | *** | ||||||
13861198-C-A | 11740492-C-A | DYZ17 | *** | ||||||
13573036-T-A | 11417360-T-A | *** | |||||||
24225151-G-C | 22079004-G-C | P3_b1 | *** | ||||||
20826397-CTTTTT-C | 18664511-CTTTTT-C | P4_Gap | 17×T | *** | |||||
9945458-A-G | 10107849-A-G | *** | |||||||
14717669-G-T | 12605737-G-T | *** | |||||||
2960051-G-A | 3092010-G-A | *** | |||||||
24434683-C-A | 22288536-C-A | *** | |||||||
2960062-CAAAAA-C | 3092021-CAAAAA-C | 17×A | *** | ||||||
19172849-G-T | 17060969-G-T | *** | |||||||
17923875-A-T | 15811995-A-T | *** | |||||||
18864931-T-G | 16753051-T-G | *** | |||||||
8913435-G-T | 9045394-G-T | *** | |||||||
15557033-CAAA-C,CA | 13445153-CAAA-C,CA | 18×A | *** | ||||||
23827571-T-G | 21665685-T-G | *** | |||||||
9645675-TC-T | 9808066-TC-T | IR3_Prx | *** | ||||||
10751033-C-CCATAA | *** | ||||||||
14945826-GT-G | 12833900-GT-G | 10×T | *** | ||||||
28766419-C-A | 26620272-C-A | *** | |||||||
56851044-C-A | *** | ||||||||
22698953-C-T | 20537067-C-T | *** | |||||||
13468647-A-G | 11312971-A-G | *** | |||||||
14030664-ATTTT-A | 11909958-ATTTT-A | 14×T | *** | ||||||
15279060-C-A | 13167159-C-A | *** | |||||||
6816511-C-A | 6948470-C-A | *** | |||||||
8321473-A-T | 8453432-A-T | *** | |||||||
13488367-A-T | 11332691-A-T | *** | |||||||
10687554-G-T | *** | ||||||||
7240564-T-C | 7372523-T-C | *** | |||||||
7409898-C-A | 7541857-C-A | *** | |||||||
8026919-CTTT-C | 8158878-CTTT-C | 14×T | *** | ||||||
8911738-C-T | 9043697-C-T | *** | |||||||
9079367-T-C | 9241758-T-C | *** | |||||||
9436896-G-T | 9599287-G-T | *** | |||||||
9960033-C-A | 10122424-C-A | *** | |||||||
11656620-A-G | DYZ17 | *** | |||||||
11671347-C-G | DYZ17 | *** | |||||||
14394465-T-A | 12273761-T-A | *** | |||||||
14454542-C-A | 12333815-C-A | *** | |||||||
15215560-C-A | 13103646-C-A | *** | |||||||
15230856-A-T | 13118942-A-T | *** | |||||||
15712261-C-A | 13600381-C-A | *** | |||||||
15986752-C-A | 13874872-C-A | *** | |||||||
16964260-GAAA-G,GAAAA | 14852380-GAAA-G,GAAAA | 15×A | *** | ||||||
17170187-TTG-G,T | 15058307-TTG-G,T | *** | |||||||
17397248-A-T | 15285368-A-T | *** | |||||||
17564883-T-G | 15453003-T-G | *** | |||||||
17960984-TG-G,TT | 15849104-TG-G,TT | *** | |||||||
18614435-T-C | 16502555-T-C | *** | |||||||
18915403-T-C | 16803523-T-C | *** | |||||||
19518611-G-A | 17406731-G-A | FGC68681 | *** | ||||||
20367021-A-T | 18205135-A-T | P5_Dst | *** | ||||||
21032997-A-G | 18871111-A-G | *** | |||||||
21152917-CTTAGG-C | 18991031-CTTAGG-C | *** | |||||||
21295234-CTT-C,CTTT | 19133348-CTT-C,CTTT | 17×T | *** | ||||||
21555238-CTTTT-C,CTTT | 19393352-CTTTT-C,CTTT | 15×T | *** | ||||||
22133846-A-G | 19971960-A-G | *** | |||||||
56828334-C-G,TTTGCA | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.