Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > BY4086 > FGC17436 > Z17693

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
253444
BigY2
253444
25960919-C-T 23814772-C-T P1_Y1 ***A*
28817488-C-A 26671341-C-A A*
24333367-G-C 22187220-G-C P3_t1 A*
13451434-C-T 11295758-C-T A*
19675187-G-A 17563307-G-A P5_Prx ***A*
28817395-C-A 26671248-C-A A*
28817487-T-A 26671340-T-A A*
25891496-C-G 23745349-C-G P1_Y1 ***A*
23181022-T-C 21019136-T-C Y***A*
22308757-T-A 20146871-T-A DYZ19 ***A*
22229761-G-C 20067875-G-C DYZ19 ++
7919486-G-T 8051445-G-T BY19788 YY++
14604943-T-C 12493145-T-C BY19791 YY++
14363946-A-G 12243241-A-G Y91202 YY++
13842951-G-A 11722245-G-A BY19790 ++
23060736-G-A 20898850-G-A YY++
8231298-G-A 8363257-G-A BY19789 YY++
7655549-T-G 7787508-T-G BY19787 YY++
7881097-G-A 8013056-G-A Y15226 YY++
15331845-T-A 13219963-T-A Y93542 YY++
7601567-T-C 7733526-T-C BY19786 YY++
7565015-A-AT 7696974-A-AT 9×T++
7399720-T-A 7531679-T-A BY19785 YY++
22477204-G-T 20315318-G-T DYZ19 **+
3164423-A-G 3296382-A-G Y81835 **+
14790963-C-T 12679034-C-T BY19792 YY++
15930827-TCTC-T 13818947-TCTC-T ***+
15590300-T-C 13478420-T-C BY19793 YY++
19365739-C-T 17253859-C-T BY19800 YY++
21925006-C-T 19763120-C-T BY19804 YY++
21612298-A-G 19450412-A-G BY19803 YY++
23583374-A-G 21421488-A-G BY19808 YY++
21303251-C-T 19141365-C-T BY19802 YY++
21101270-T-C 18939384-T-C BY19801 YY++
23135385-C-T 20973499-C-T BY19807 YY++
18690823-C-T 16578943-C-T BY19799 YY++
22178041-T-G 20016155-T-G BY19805 YY++
17984243-G-T 15872363-G-T Y100879 Y++
17944173-C-T 15832293-C-T BY19798 YY++
22874861-C-T 20712975-C-T BY19806 YY++
16579433-C-T 14467553-C-T BY19795 YY++
16452436-C-T 14340556-C-T YY++
16403960-A-C 14292080-A-C BY19794 YY++
17298611-G-A 15186731-G-A BY19797 YY++
17064694-G-A 14952814-G-A BY19796 YY++
22477206-C-A 20315320-C-A DYZ19 **+
6865884-A-G 6997843-A-G FGC59359FGC59344 YY++
22477201-C-T 20315315-C-T BY24613 DYZ19 **+
22279292-C-T 20117406-C-T Z4978 BY26395 DYZ19 ****
15224740-A-C 13112826-A-C Y****
15224734-G-A 13112820-G-A Y****
15224727-G-A 13112813-G-A Y****
15224714-C-G 13112800-C-G Y93319 Y****
15224708-G-A 13112794-G-A Y****
15224733-T-C 13112819-T-C Y****
26273625-G-A 24127478-G-A P1_Y1 ****
14114905-G-A 11994199-G-A **
11657596-T-G **
14470816-C-A 12350085-C-A **
13859362-G-C 11738656-G-C **
13859353-T-C 11738647-T-C **
13856775-T-A 11736069-T-A **
13856761-T-A 11736055-T-A **
13846754-C-A 11726048-C-A **
13804116-C-A 11683410-C-A **
11663122-T-A **
11662619-G-T **
11657080-A-C **
13909228-C-A 11788522-C-A **
11645703-G-T **
14483524-C-A 12362793-C-A **
13717488-C-A 11561812-C-A **
14505241-C-A 12393446-C-A **
14511416-G-A 12399621-G-A **
14269041-C-A 12148335-C-A **
13705523-A-ATGGAT 11549847-A-ATGGAT **
13705503-A-C 11549827-A-C **
13705479-T-G 11549803-T-G **
13628904-C-A 11473228-C-A **
13576078-C-T 11420402-C-T **
14270537-C-A 12149831-C-A **
13931059-C-T 11810353-C-T **
13909243-T-A 11788537-T-A **
13989068-C-A 11868362-C-A **
14025996-AAG-A 11905290-AAG-A **
14025990-G-A 11905284-G-A **
14025755-G-C 11905049-G-C **
14021381-C-T 11900675-C-T **
14021245-C-G 11900539-C-G **
14021213-T-A 11900507-T-A **
14000087-G-T 11879381-G-T **
14354379-A-C 12233674-A-C **
14354387-A-C 12233682-A-C **
14385562-G-T 12264858-G-T **
14423947-C-A 12303222-C-A **
14050056-C-A 11929350-C-A **
13984198-C-A 11863492-C-A **
13951786-C-G 11831080-C-G **
13944704-C-G 11823998-C-G **
14143320-C-A 12022614-C-A **
14339537-T-G 12218832-T-G **
14300096-T-A 12179390-T-A **
14224396-C-A 12103690-C-A **
14296431-C-A 12175725-C-A **
14295631-C-A 12174925-C-A **
13940230-A-T 11819524-A-T **
13938645-G-T 11817939-G-T **
14152284-T-C 12031578-T-C **
10766686-T-C **
14513298-C-T 12401503-C-T **
15392096-C-A 13280216-C-A **
15211024-G-T 13099110-G-T **
15219142-C-A 13107228-C-A **
15258539-G-A 13146623-G-A **
15263536-C-A 13151626-C-A **
15277067-T-A 13165156-T-A **
15302587-C-A 13190686-C-A **
15320577-G-A 13208683-G-A **
15320579-G-A 13208685-G-A **
15320586-AGGG-A 13208692-AGGG-A **
15323514-A-G 13211632-A-G Y19885 **
15323519-A-G 13211637-A-G **
15361265-C-A 13249385-C-A **
15392114-C-CAA 13280234-C-CAA **
15127194-T-A 13015281-T-A **
15392130-A-G 13280250-A-G **
15394243-A-T 13282363-A-T **
15438891-T-C 13327011-T-C **
15438903-T-A 13327023-T-A **
15468671-C-T 13356791-C-T **
15479968-C-A 13368088-C-A **
15556709-C-A 13444829-C-A **
15557031-C-A 13445151-C-A **
15618460-C-A 13506580-C-A **
15671119-C-A 13559239-C-A **
15677692-G-T 13565812-G-T **
15677767-T-C 13565887-T-C **
15685895-C-A 13574015-C-A **
15211012-G-T 13099098-G-T **
14970269-CT-C 12858344-CT-C **
14513338-A-G 12401543-A-G **
14681659-C-A 12569725-C-A **
14533555-C-A 12421756-C-A **
14546754-C-A 12434955-C-A **
14558597-G-A 12446798-G-A **
14580807-A-G 12469007-A-G **
14589435-T-C 12477635-T-C **
13461646-C-A 11305970-C-A **
14644976-C-T 12533045-C-T **
14658204-T-A 12546269-T-A **
14658205-A-C 12546270-A-C **
14658210-G-A 12546275-G-A **
14658223-T-C 12546288-T-C **
14658240-T-C 12546305-T-C **
14686054-T-C 12574120-T-C **
14914766-C-A 12802833-C-A **
14693532-C-A 12581598-C-A **
14712168-C-T 12600235-C-T **
14743667-C-A 12631736-C-A **
14767056-G-T 12655125-G-T **
14767906-C-A 12655975-C-A **
14776910-TCTA-T 12664979-TCTA-T **
14776927-A-C 12664996-A-C **
14789399-C-A 12677470-C-A **
14789490-G-A 12677561-G-A **
14825854-C-T 12713921-C-T **
14826540-A-T 12714607-A-T **
14879854-G-T 12767924-G-T **
14880400-C-A 12768470-C-A **
13478166-C-A 11322490-C-A **
10992980-A-C **
13410067-G-C 11254391-G-C **
10852197-C-A **
10831571-C-CGGAAG **
10831585-C-G **
10834953-C-T **
10835361-C-A **
10838686-C-A **
10841197-C-A **
10841817-C-A **
10842144-C-A **
10844001-T-G **
10848947-C-A **
10848957-C-A **
10856602-C-A **
10828833-C-A **
10856615-T-C **
10857307-C-A **
10869068-C-A **
10873318-C-A **
10879226-T-G **
10879241-T-G **
10880938-C-A **
10880942-C-A **
10883681-C-A **
10884555-T-G **
10889887-T-G **
10890216-C-A **
10829612-C-A **
10828206-C-T **
10899005-C-A **
10790604-A-T **
10746552-T-C **
10760529-C-A **
10775853-T-C **
10775965-C-T **
10777836-C-T **
10782086-A-G **
10782204-C-A **
10782264-C-T **
10787531-T-C **
10788806-T-C **
10790206-C-A **
10790609-A-T **
10814217-C-A **
10791763-G-T **
10792825-T-C **
10794899-C-A **
10796171-C-T **
10797369-C-A **
10805104-G-T **
10809329-ATTCC-A **
10809424-A-T **
10809480-G-A **
10809491-C-A **
10812365-G-T **
10813261-C-T **
10895416-C-A **
10912183-A-G **
13394837-A-T 11239161-A-T **
11027422-A-C **
10994342-C-G **
10994384-T-C **
10994389-C-G **
10994397-C-A **
10997062-T-C **
10997682-C-A **
11003422-G-T **
11005472-C-CCATGA **
11007020-C-A **
11011703-A-G **
11017990-C-A **
11030450-G-T **
15734120-C-A 13622240-C-A **
13198044-A-G 11042368-A-G **
13212477-G-A 11056801-G-A **
13213915-A-G 11058239-A-G **
13213922-A-T 11058246-A-T **
13216663-C-T 11060987-C-T **
13229530-C-A 11073854-C-A **
13233209-C-A 11077533-C-A **
13243475-C-A 11087799-C-A **
13275310-C-A 11119634-C-A **
13304397-A-T 11148721-A-T **
13323533-G-T 11167857-G-T **
13329168-G-T 11173492-G-T **
10994327-G-A **
10987287-G-A **
10917936-G-T **
10959332-T-C **
10921920-C-A **
10924787-C-A **
10933646-C-A **
10939033-C-G **
10939082-A-C **
10943696-C-A **
10946544-C-T **
10946545-A-T **
10946615-A-C **
10954158-C-A **
10956784-C-A **
10956819-A-T **
10960973-C-A **
10986485-T-A **
10968190-A-C **
10968244-C-A **
10968928-A-T **
10973682-C-A **
10973860-ACTCCTCTCAGTTCC-A **
10973883-CATTCT-C **
10974626-C-A **
10975761-C-A **
10977605-C-A **
10986445-A-T **
10986451-CACCTT-C **
10986467-C-T **
15690129-C-A 13578249-C-A **
16503785-C-A 14391905-C-A **
15758542-C-A 13646662-C-A **
21969658-C-A 19807772-C-A **
21624620-T-G 19462734-T-G **
21796630-A-G 19634744-A-G **
21818118-T-G 19656232-T-G **
21839966-A-T 19678080-A-T FGC23448 **
21905283-C-A 19743397-C-A 16×A**
21923922-T-C 19762036-T-C **
21923927-T-C 19762041-T-C **
21935165-C-A 19773279-C-A **
21953668-C-T 19791782-C-T **
21953669-A-G 19791783-A-G **
21961366-C-T 19799480-C-T **
22122316-C-A 19960430-C-A **
21531449-C-A 19369563-C-A **
22125781-C-A 19963895-C-A BY26417 **
22153359-T-C 19991473-T-C **
22316375-A-G 20154489-A-G DYZ19 **
22613971-C-A 20452085-C-A **
22665932-T-C 20504046-T-C **
22722499-C-A 20560613-C-A **
22843716-A-C 20681830-A-C **
22843773-C-A 20681887-C-A **
22970281-TCAA-T 20808395-TCAA-T **
23005862-C-A 20843976-C-A **
23019779-T-A 20857893-T-A **
23026672-C-A 20864786-C-A **
21602877-T-C 19440991-T-C **
21522816-TC-T 19360930-TC-T **
23061120-C-A 20899234-C-A **
20001323-A-G 17889443-A-G P5_Prx **
19690374-G-A 17578494-G-A P5_Prx **
19690391-C-T 17578511-C-T P5_Prx **
19690404-C-A 17578524-C-A P5_Prx **
19690423-T-C 17578543-T-C P5_Prx **
19741959-T-TA 17630079-T-TA P5_Prx **
19754830-A-T 17642950-A-T P5_Prx **
19754884-T-C 17643004-T-C P5_Prx **
19827522-G-T 17715642-G-T P5_Prx **
19847637-T-C 17735757-T-C P5_Prx **
19847658-TTTTTGG-T 17735778-TTTTTGG-T P5_Prx **
20001321-G-A 17889441-G-A P5_Prx **
20332044-G-A 18170158-G-A P5_Dst **
21394533-T-G 19232647-T-G **
20424822-A-C 18262936-A-C P5_Dst **
20950688-A-C 18788802-A-C P4_Dst **
21104434-C-T 18942548-C-T **
21110055-C-A 18948169-C-A **
21133473-C-A 18971587-C-A **
21136776-C-A 18974890-C-A **
21153611-G-T 18991725-G-T **
21206969-C-A 19045083-C-A **
21208900-C-A 19047014-C-A **
21212778-C-A 19050892-C-A **
21240579-T-C 19078693-T-C **
21317668-C-A 19155782-C-A **
23034470-T-G 20872584-T-G **
23062204-T-A 20900318-T-A **
19644817-T-A 17532937-T-A P5_Prx **
28660550-C-A 26514403-C-A **
27963492-C-A 25817345-C-A P1_Y2 **
27963550-CTCT-C 25817403-CTCT-C P1_Y2 **
28498023-A-G 26351876-A-G **
28504768-C-A 26358621-C-A **
28505566-C-A 26359419-C-A **
28506128-T-G 26359981-T-G **
28533869-T-C 26387722-T-C **
28550499-C-A 26404352-C-A **
28590490-G-T 26444343-G-T **
28632207-G-C 26486060-G-C **
28651383-G-T 26505236-G-T **
28707328-C-G 26561181-C-G **
27791844-T-A 25645697-T-A P1_Y2 **
28764292-C-A 26618145-C-A **
28797944-A-G 26651797-A-G **
28803683-A-G 26657536-A-G **
56837279-C-A **
56837289-C-A **
56838304-C-T **
56838319-A-G **
56844623-C-A **
56850108-T-G **
56850168-T-G **
56850617-G-T **
24232-G-A **
27883619-A-G 25737472-A-G P1_Y2 **
26140214-A-C 23994067-A-C P1_Y1 **
23098809-T-G 20936923-T-G **
23449256-C-A 21287370-C-A **
23126181-C-A 20964295-C-A **
23142154-C-T 20980268-C-T **
23186594-C-A 21024708-C-A **
23188910-C-A 21027024-C-A **
23231649-A-T 21069763-A-T **
23306565-T-G 21144679-T-G **
23315894-T-C 21154008-T-C **
23331130-AG-A 21169244-AG-A **
23339125-C-A 21177239-C-A **
23341491-C-A 21179605-C-A **
23420730-C-A 21258844-C-A **
23455010-T-C 21293124-T-C **
25938225-C-A 23792078-C-A P1_Y1 **
23468578-C-A 21306692-C-A **
23555048-G-T 21393162-G-T **
23786337-C-A 21624451-C-A **
23801674-G-A 21639788-G-A **
23810625-A-T 21648739-A-T **
23834765-C-T 21672879-C-T **
24095833-C-T 21949686-C-T P3_b1 **
24124499-C-A 21978352-C-A P3_b1 **
24363647-TTT-A 22217500-TTT-A **
24458783-AG-A 22312636-AG-A **
24466522-C-A 22320375-C-A **
24485692-G-T 22339545-G-T 13×TTATT**
19668705-C-A 17556825-C-A P5_Prx **
19551650-G-A 17439770-G-A Y105118 **
15767220-TA-T 13655340-TA-T **
16905702-C-A 14793822-C-A **
16581434-C-T 14469554-C-T **
16625842-T-G 14513962-T-G **
16625978-C-A 14514098-C-A **
16681550-C-A 14569670-C-A **
16686721-A-T 14574841-A-T **
16701988-G-A 14590108-G-A Z41701 **
16713105-C-G 14601225-C-G **
16742924-C-A 14631044-C-A **
16760130-T-C 14648250-T-C **
16800813-T-A 14688933-T-A **
16868688-AAT-A 14756808-AAT-A **
16931367-G-T 14819487-G-T **
16577706-T-C 14465826-T-C **
16944643-C-A 14832763-C-A **
16988453-T-TA 14876573-T-TA 10×A**
17014794-C-A 14902914-C-A **
17085934-G-T 14974054-G-T Y98144 **
17165459-C-A 15053579-C-A **
17170302-C-T 15058422-C-T **
17188403-C-A 15076523-C-A **
17196553-G-C 15084673-G-C **
17297399-C-A 15185519-C-A **
17381850-C-A 15269970-C-A **
17385645-A-T 15273765-A-T **
17481166-G-T 15369286-G-T **
16581423-C-A 14469543-C-A **
10746522-A-C **
17491989-A-C 15380109-A-C **
16089736-T-A 13977856-T-A **
15770153-T-C 13658273-T-C **
15775886-G-T 13664006-G-T **
15898926-C-A 13787046-C-A **
15916231-C-A 13804351-C-A **
15928451-G-T 13816571-G-T **
15928738-T-G 13816858-T-G **
15932096-C-A 13820216-C-A **
24251-C-A **
15987352-C-A 13875472-C-A **
16034194-C-A 13922314-C-A **
16057014-C-A 13945134-C-A **
16171888-C-A 14060008-C-A **
16484353-T-G 14372473-T-G **
16180186-G-A 14068306-G-A **
16180194-A-C 14068314-A-C **
16205819-A-T 14093939-A-T **
16226460-A-T 14114580-A-T **
16274020-C-A 14162140-C-A **
16276140-C-A 14164260-C-A **
16278610-C-A 14166730-C-A **
16288781-C-A 14176901-C-A **
16294976-A-G 14183096-A-G **
16340187-A-T 14228307-A-T **
16351633-T-G 14239753-T-G **
16442043-C-A 14330163-C-A **
17486326-A-T 15374446-A-T **
17503292-C-A 15391412-C-A **
19411835-C-A 17299955-C-A **
19078977-C-A 16967097-C-A **
18645865-C-A 16533985-C-A **
18730401-G-A 16618521-G-A **
18742382-G-C 16630502-G-C **
18779494-C-A 16667614-C-A **
18864710-C-A 16752830-C-A **
18932831-T-A 16820951-T-A **
18966113-C-T 16854233-C-T **
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56841529-G-T ***
22243843-C-A 20081957-C-A DYZ19 ***
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13466686-G-T 11311010-G-T ***
13466673-T-G 11310997-T-G ***
13449468-A-G 11293792-A-G ***
13664697-A-AGGAAT 11509021-A-AGGAAT 10×GGAAT***
13801492-T-A 11680786-T-A ***
10657177-C-A ***
10021985-T-C 10184376-T-C S12959 ***
22315953-G-GT 20154067-G-GT DYZ19 ***
13480862-A-G 11325186-A-G ***
16434671-C-T 14322791-C-T PF4557 CTS5691 ***
28800945-A-G 26654798-A-G ***
13449467-T-G 11293791-T-G ***
13801431-A-G 11680725-A-G ***
10021947-C-A 10184338-C-A ***
10946639-C-CATTCA ***
6734703-A-G 6866662-A-G ***
16354356-C-CA 14242476-C-CA ***
6149808-T-C 6281767-T-C IR3_Dst ***
16213546-C-A 14101666-C-A ***
11677471-T-TGGAGG ***
16246048-T-G 14134168-T-G ***
16253843-A-AAT 14141963-A-AAT ***
11677461-A-T ***
11677451-A-G ***
10980697-A-ACCATTCCATT ***
16354385-C-A 14242505-C-A ***
6000815-G-T 6132774-G-T ***
16411941-G-A 14300061-G-A ***
6630562-T-A 6762521-T-A ***
16612095-C-CA 14500215-C-CA 8×A***
9231575-T-A 9393966-T-A ***
13487742-CT-CA,T 11332066-CT-CA,T ***
13315650-G-T 11159974-G-T ***
7032664-C-A 7164623-C-A ***
11030208-C-G,T ***
11030199-A-G ***
6124216-A-G 6256175-A-G ***
13489629-CCACCCA-C,CCACACA 11333953-CCACCCA-C,CCACACA ***
13453683-T-A 11298007-T-A 5×ATTCC***
10686690-C-G ***
3848953-C-A 3980912-C-A ***
14530895-C-T 12419096-C-T ***
14866110-C-T 12754176-C-T ***
15078102-CT-C,CTT 12966192-CT-C,CTT 14×T***
2819960-CTTT-C,CTT 2951919-CTTT-C,CTT 17×T***
15235310-C-CTT 13123396-C-CTT 13×T***
2689634-A-G 2821593-A-G ***
10839987-T-A,C ***
10844261-T-G ***
15619616-C-A 13507736-C-A ***
13859740-G-T 11739034-G-T ***
5448931-C-A 5580890-C-A ***
5775138-C-A 5907097-C-A ***
13938854-C-A 11818148-C-A ***
13935500-C-A 11814794-C-A ***
14319553-G-A 12198847-G-A ***
15926048-C-A 13814168-C-A ***
15926062-T-C 13814182-T-C ***
10744549-T-A,C ***
21732684-C-T 19570798-C-T ***
11030161-TCCAA-CCC,T ***
7375361-G-T 7507320-G-T ***
10844260-T-G ***
9407715-C-A 9570106-C-A ***
22920650-G-T 20758764-G-T ***
18743437-C-A 16631557-C-A ***
11001436-A-C,T ***
14807849-C-A 12695920-C-A ***
10866198-AT-A ***
9361090-ACC-A 9523481-ACC-A ***
9399909-C-A 9562300-C-A ***
20833661-C-A 18671775-C-A P4_Gap ***
21042096-C-A 18880210-C-A ***
8644547-CTA-C,CTATA 8776506-CTA-C,CTATA 8×TA***
21091067-A-T 18929181-A-T ***
15140655-G-GA 13028742-G-GA 9×A***
21306665-C-A 19144779-C-A ***
9927220-C-A 10089611-C-A ***
10828168-A-G ***
21603857-C-A 19441971-C-A ***
10828162-C-T ***
21648331-A-G 19486445-A-G ***
21713531-C-A 19551645-C-A ***
19356963-CAA-C,CAAA 17245083-CAA-C,CAAA 14×A***
19333264-G-T 17221384-G-T ***
17864982-T-C 15753102-T-C ***
18564303-C-A 16452423-C-A ***
17869666-C-A 15757786-C-A ***
15392826-T-C 13280946-T-C ***
7505990-C-A 7637949-C-A IR1_L ***
7665502-C-A 7797461-C-A ***
18094723-C-A 15982843-C-A ***
15336065-G-T 13224183-G-T ***
10983520-G-A,C ***
13821443-C-A 11700737-C-A ***
10973965-CC-C,CT ***
6120286-C-A 6252245-C-A ***
8528900-C-A 8660859-C-A 15×A***
8012777-A-G 8144736-A-G ***
8049859-A-G 8181818-A-G ***
18664663-C-A 16552783-C-A ***
19087926-T-A 16976046-T-A ***
19125029-T-A 17013149-T-A ***
10787575-C-A ***
8387600-G-A 8519559-G-A ***
19206807-T-G 17094927-T-G ***
8479415-TTTC-T,TTTT 8611374-TTTC-T,TTTT ***
25803118-ATG-A 23656971-ATG-A P1_b3 16×TG***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2534441040008275100247582500
Kit: 253444933063376127557526636
Used in age calculations1040008276127557582500
Counts of SNPs3729
Variant counts last updated 2018-05-16 18:01:55.



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