Tree Position

R-P312/S116 > Z290 > L21/S145

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
E21000
BigY2
E21000
6321885-T-C 6453844-T-C IR3_Dst ***A*
20658232-G-A 18496346-G-A P4_Prx ***A*
6313486-C-T 6445445-C-T IR3_Dst ***A*
6273132-C-T 6405091-C-T IR3_Dst ***A*
18351758-G-A 16239878-G-A P6_Prx ***A*
22314108-T-C 20152222-T-C DYZ19 A*
17651942-C-G 15540062-C-G BY116357 YY++
13803594-A-G 11682888-A-G BY90041 ++
7959601-C-A 8091560-C-A BY69069 YY++
16409809-G-C 14297929-G-C BY107594 YY++
15976413-G-T 13864533-G-T BY105255 YY++
8982089-A-T 9144480-A-T BY77007 Y++
9405229-G-A 9567620-G-A BY156083 YY++
15966650-AAG-A 13854770-AAG-A ***+
17550632-G-A 15438752-G-A BY115641 YY++
13872374-GAAAT-G 11751668-GAAAT-G **+
15050910-C-T 12939001-C-T BY99416 YY++
14196643-ACTCT-A 12075937-ACTCT-A ++
14769654-G-A 12657723-G-A BY97476 YY++
7316863-C-A 7448822-C-A BY64527 YY++
14811227-T-C 12699298-T-C BY97717 YY++
14940345-C-T 12828419-C-T BY98616 YY++
14984786-T-A 12872854-T-A BY98910 YY++
15023570-A-C 12911658-A-C BY156480 YY++
7446588-G-C 7578547-G-C BY65267 IR1_L ++
15466730-A-C 13354850-A-C BY101772 YY++
6716075-C-T 6848034-C-T BY60879 YY++
22824116-G-T 20662230-G-T BY141047 YY++
28759090-A-C 26612943-A-C BY151040 Y++
22467643-A-C 20305757-A-C FGC1246 DYZ19 +**
23770833-A-G 21608947-A-G BY147579 Y++
23554156-T-C 21392270-T-C BY146209 YY++
23543537-T-C 21381651-T-C BY146113 YY++
9147153-A-G 9309544-A-G BY876 Y++
9147152-T-C 9309543-T-C BY875 Y++
22700153-G-A 20538267-G-A BY140123 YY++
6715027-C-T 6846986-C-T BY60874 YY++
22595148-G-C 20433262-G-C BY157091 YY++
22267175-A-T 20105289-A-T DYZ19 +
21696269-T-C 19534383-T-C BY134799 YY++
22467677-A-G 20305791-A-G BY21626 DYZ19 +
21513377-A-AT 19351491-A-AT ++
17910331-C-G 15798451-C-G BY118354 YY++
5999909-G-A 6131868-G-A BY58990 ++
17514542-G-T 15402662-G-T BY115383 YY++
17514541-G-A 15402661-G-A BY115382 YY++
18667929-T-TC 16556049-T-TC 9×C****
22316907-C-G 20155021-C-G DYZ19 ****
14610880-GATACATAC-G 12499082-GATACATACATAC-G 9×ATAC****
15595013-C-T 13483133-C-T **
15969921-C-A 13858041-C-A **
15352811-CT-C 13240930-CT-C **
15777961-C-A 13666081-C-A **
15803380-C-A 13691500-C-A **
15865590-T-C 13753710-T-C **
15893825-C-A 13781945-C-A **
16045860-C-A 13933980-C-A **
16000101-G-T 13888221-G-T **
15369084-C-A 13257204-C-A **
16057405-C-A 13945525-C-A **
16063087-C-G 13951207-C-G **
16134288-C-A 14022408-C-A **
15334405-C-A 13222523-C-A **
15360788-G-A 13248908-G-A **
15399445-G-T 13287565-G-T **
15393947-C-A 13282067-C-A **
16170541-C-A 14058661-C-A **
15400161-G-A 13288281-G-A **
15742411-C-A 13630531-C-A **
15740926-A-C 13629046-A-C **
15740823-C-A 13628943-C-A **
15722548-C-A 13610668-C-A **
15714354-C-A 13602474-C-A **
15690147-T-C 13578267-T-C **
15433520-C-A 13321640-C-A **
15455053-C-A 13343173-C-A **
15457956-A-T 13346076-A-T **
15497505-C-A 13385625-C-A Y93941 **
15497532-C-A 13385652-C-A **
16134567-C-A 14022687-C-A Y95496 **
16750050-C-A 14638170-C-A **
16226544-C-A 14114664-C-A **
17330321-C-T 15218441-C-T **
17157550-C-A 15045670-C-A **
17192587-A-G 15080707-A-G **
17330290-G-T 15218410-G-T **
17330296-A-C 15218416-A-C **
17330306-A-T 15218426-A-T **
17330313-A-G 15218433-A-G **
17330322-A-G 15218442-A-G **
17023372-C-A 14911492-C-A **
17338968-C-A 15227088-C-A **
17347574-C-A 15235694-C-A **
17536698-C-A 15424818-C-A **
17539939-A-T 15428059-A-T **
17622705-G-T 15510825-G-T **
17637767-C-T 15525887-C-T **
17128143-G-A 15016263-G-A **
16867564-A-T 14755684-A-T **
16246119-A-T 14134239-A-T **
16463480-T-C 14351600-T-C **
16298450-A-C 14186570-A-C **
16363973-C-G 14252093-C-G **
16364035-G-A 14252155-G-A **
16424327-G-T 14312447-G-T **
16428158-T-C 14316278-T-C **
16430108-G-A 14318228-G-A **
16479832-T-G 14367952-T-G **
15321424-G-C 13209542-G-C **
16539564-TG-T 14427684-TG-T **
16540524-G-A 14428644-G-A **
16571887-T-C 14460007-T-C **
16577574-C-A 14465694-C-A **
16592380-A-G 14480500-A-G **
16691414-C-A 14579534-C-A **
15330794-C-A 13218912-C-A **
14506953-C-A 12395158-C-A **
15276782-C-A 13164871-C-A **
13487513-A-G 11331837-A-G **
14228200-C-A 12107494-C-A **
14225544-C-A 12104838-C-A **
14108566-C-A 11987860-C-A **
14027249-C-A 11906543-C-A **
14022878-C-A 11902172-C-A **
13997595-A-C 11876889-A-C **
13885885-G-A 11765179-G-A **
13878568-A-G 11757862-A-G **
13838394-G-T 11717688-G-T **
13805231-C-A 11684525-C-A **
11659450-T-A **
11655830-G-T **
11648274-A-T **
13573165-C-A 11417489-C-A **
13484497-C-A 11328821-C-A **
14230298-T-G 12109592-T-G **
13484096-T-C 11328420-T-C **
13484082-C-A 11328406-C-A **
13484075-A-C 11328399-A-C **
13483960-C-T 11328284-C-T **
13483199-G-A 11327523-G-A **
13483196-C-A 11327520-C-A **
13483184-G-C 11327508-G-C **
13483151-T-C 11327475-T-C **
13483138-G-C 11327462-G-C **
13483130-G-C 11327454-G-C **
13483128-T-A 11327452-T-A **
13483109-A-G 11327433-A-G **
13483104-G-C 11327428-G-C **
13480066-A-T 11324390-A-T **
14228935-C-A 12108229-C-A **
14230313-G-C 12109607-G-C **
15198804-A-G 13086890-A-G **
14616566-C-T 12504764-C-T **
15190155-C-A 13078241-C-A **
15180804-C-A 13068890-C-A **
14988691-C-A 12876757-C-A **
14943603-A-G 12831677-A-G **
14894002-C-A 12782068-C-A **
14884535-C-A 12772601-C-A **
14879785-ATT-A 12767855-ATT-A 11×T**
14867141-C-A 12755211-C-A **
14862984-C-A 12751050-C-A **
14844937-C-A 12733003-C-A **
14842433-C-A 12730499-C-A **
14779481-A-T 12667551-A-T **
14779477-T-C 12667547-T-C **
14743970-C-A 12632039-C-A **
14561240-C-A 12449441-C-A **
14253100-A-G 12132394-A-G **
14390133-T-C 12269429-T-C **
14313552-G-T 12192846-G-T **
14362620-C-A 12241915-C-A **
14363419-C-A 12242714-C-A **
14373695-GT-G 12252991-GT-G **
14383479-G-A 12262775-G-A **
14384930-G-T 12264226-G-T **
14397344-A-G 12276640-A-G **
14549576-G-T 12437777-G-T **
14397351-A-C 12276647-A-C 10×T**
14504529-C-A 12392734-C-A **
17755902-G-C 15644022-G-C **
14518306-C-A 12406507-C-A **
14520912-C-A 12409113-C-A **
14546865-T-C 12435066-T-C **
17663107-C-T 15551227-C-T **
18856350-C-A 16744470-C-A **
17804297-C-A 15692417-C-A **
22515261-C-A 20353375-C-A **
23058517-G-A 20896631-G-A **
23044158-G-A 20882272-G-A **
22965237-G-T 20803351-G-T **
22965000-C-T 20803114-C-T **
22893422-C-A 20731536-C-A **
22888590-C-A 20726704-C-A **
22800650-A-G 20638764-A-G **
22739656-C-A 20577770-C-A **
22730340-AAGTCTC-A 20568454-AAGTCTC-A **
22577079-C-A 20415193-C-A **
22564968-C-A 20403082-C-A **
22542503-C-A 20380617-C-A **
22537515-A-G 20375629-A-G **
22527281-C-A 20365395-C-A **
22489461-C-A 20327575-C-A DYZ19 **
23831288-T-A 21669402-T-A **
22470732-C-A 20308846-C-A DYZ19 **
22253143-A-G 20091257-A-G DYZ19 **
22161574-C-A 19999688-C-A **
21972346-A-T 19810460-A-T **
21969531-A-G 19807645-A-G **
21902697-G-T 19740811-G-T **
21863966-C-G 19702080-C-G **
21815178-C-A 19653292-C-A **
21813857-C-A 19651971-C-A **
21772519-C-A 19610633-C-A **
21623787-C-A 19461901-C-A **
21555663-C-A 19393777-C-A **
21546186-G-T 19384300-G-T **
21546163-A-G 19384277-A-G **
23419244-C-A 21257358-C-A **
23842593-G-T 21680707-G-T **
21444718-A-T 19282832-A-T **
27546760-TTGAG-T 25400613-TTGAG-T P1_Y2 **
56850873-G-T **
56849076-T-C **
58982181-G-T 56836034-G-T **
56832132-C-A **
56828807-T-C **
28815130-A-G 26668983-A-G **
28732987-G-T 26586840-G-T **
28617751-T-C 26471604-T-C **
28588864-C-A 26442717-C-A **
28588430-T-C 26442283-T-C **
28481862-C-A 26335715-C-A **
27967322-CTGTG-C 25821175-CTGTG-C P1_Y2 **
27756506-C-A 25610359-C-A P1_Y2 **
27637237-T-C 25491090-T-C P1_Y2 **
26153575-T-A 24007428-T-A P1_Y1 **
24331307-G-T 22185160-G-T P3_t1 **
24416862-C-A 22270715-C-A **
24342197-A-G 22196050-A-G P3_t1 **
24381988-C-A 22235841-C-A **
24406507-C-A 22260360-C-A **
24406573-A-T 22260426-A-T **
24407046-A-G 22260899-A-G **
24409206-G-T 22263059-G-T **
24421835-C-T 22275688-C-T **
26101477-A-T 23955330-A-T P1_Y1 **
24523510-C-A 22377363-C-A **
24875620-G-T 22729473-G-T g1 **
24878299-C-A 22732152-C-A g1 **
24878811-A-G 22732664-A-G g1 **
25096443-G-A 22950296-G-A g1 **
25885709-A-G 23739562-A-G P1_Y1 **
21511144-C-A 19349258-C-A **
21435488-C-A 19273602-C-A **
17864911-C-A 15753031-C-A **
18672471-T-C 16560591-T-C **
19271553-A-AG 17159673-A-AG **
19202770-A-AG 17090890-A-AG **
19159873-C-A 17047993-C-A **
19012402-T-A 16900522-T-A **
19000269-G-T 16888389-G-T **
18925351-A-G 16813471-A-G **
18915102-T-C 16803222-T-C **
18911033-T-G 16799153-T-G **
13454695-T-C 11299019-T-C **
18795012-G-A 16683132-G-A **
18794999-A-G 16683119-A-G **
18769535-C-A 16657655-C-A **
18688447-G-T 16576567-G-T **
18673780-C-A 16561900-C-A **
18636735-C-A 16524855-C-A **
19295516-C-A 17183636-C-A **
18087829-C-T 15975949-C-T **
17876240-C-A 15764360-C-A **
17928942-C-A 15817062-C-A **
18071494-C-A 15959614-C-A **
18072622-C-T 15960742-C-T **
18082906-A-T 15971026-A-T **
18085291-C-A 15973411-C-A **
18155675-G-A 16043795-G-A **
18628081-G-T 16516201-G-T **
18179523-C-A 16067643-C-A **
18239022-C-A 16127142-C-A **
18262502-C-G 16150622-C-G **
18405975-G-A 16294095-G-A P6_Gap **
18425230-G-GT 16313350-G-GT P6_Gap **
18611526-C-A 16499646-C-A **
19286430-C-A 17174550-C-A **
19318313-C-A 17206433-C-A **
21388647-C-T 19226761-C-T **
21104514-C-A 18942628-C-A **
21380631-C-A 19218745-C-A **
21353376-C-A 19191490-C-A **
21323799-G-T 19161913-G-T **
21320031-AG-A 19158145-AG-A **
21318437-C-A 19156551-C-A **
21308380-C-A 19146494-C-A **
21237812-C-A 19075926-C-A **
21221334-C-A 19059448-C-A **
21212763-A-G 19050877-A-G **
21182526-G-A 19020640-G-A **
21164754-C-A 19002868-C-A **
21147889-C-A 18986003-C-A **
21136916-T-C 18975030-T-C **
21136831-G-A 18974945-G-A **
21095731-C-A 18933845-C-A **
19376255-G-A 17264375-G-A **
19517792-G-T 17405912-G-T **
19376278-C-A 17264398-C-A **
19399771-C-A 17287891-C-A **
19414922-C-A 17303042-C-A **
19439618-C-A 17327738-C-A Y104732 **
19448523-C-A 17336643-C-A **
19482257-T-C 17370377-T-C **
19537953-G-A 17426073-G-A **
21088714-T-A 18926828-T-A **
19609385-G-C 17497505-G-C P5_Prx **
19675461-T-C 17563581-T-C P5_Prx **
19706669-C-T 17594789-C-T P5_Prx **
19721355-AT-A 17609475-AT-A P5_Prx **
19770244-A-T 17658364-A-T P5_Prx **
20326087-A-T 18164201-A-T P5_Dst **
13462370-C-G 11306694-C-G **
56887108-C-A **
13483229-C-T 11327553-C-T **
4229924-C-A 4361883-C-A **
5185498-C-A 5317457-C-A **
5180560-A-T 5312519-A-T **
5172151-C-A 5304110-C-A **
5172124-C-A 5304083-C-A **
5085787-A-G 5217746-A-G **
5084368-T-C 5216327-T-C **
4949181-G-GT 5081140-G-GT 12×T**
4874341-C-T 5006300-C-T **
4700436-C-A 4832395-C-A **
4479939-T-C 4611898-T-C **
4443895-C-A 4575854-C-A **
4399057-C-A 4531016-C-A **
4239658-G-T 4371617-G-T **
4178963-G-T 4310922-G-T **
5247624-C-G 5379583-C-G **
4094685-T-G 4226644-T-G **
4070702-A-C 4202661-A-C **
4049840-C-A 4181799-C-A **
3833972-C-A 3965931-C-A **
3804556-C-A 3936515-C-A **
3640393-C-A 3772352-C-A **
3590184-G-T 3722143-G-T **
3507730-G-A 3639689-G-A **
3418684-C-G 3550643-C-G **
3328843-C-A 3460802-C-A **
3194367-A-T 3326326-A-T **
3012465-G-T 3144424-G-T **
3006904-G-T 3138863-G-T **
5204620-T-A 5336579-T-A **
5335464-C-A 5467423-C-A **
2895046-C-A 3027005-C-A **
6245781-C-A 6377740-C-A IR3_Dst **
7080160-C-A 7212119-C-A **
7061777-A-T 7193736-A-T **
7030454-A-G 7162413-A-G **
7029922-G-GGAGA 7161881-G-GGAGA 10×GA**
6959824-C-A 7091783-C-A **
6948344-A-T 7080303-A-T **
6905517-T-C 7037476-T-C **
6882442-C-A 7014401-C-A **
6647940-C-A 6779899-C-A **
6516853-C-A 6648812-C-A **
6437534-C-A 6569493-C-A **
6381807-G-T 6513766-G-T **
6268755-G-A 6400714-G-A IR3_Dst **
6040198-T-C 6172157-T-C **
5367729-A-C 5499688-A-C **
6012849-T-A 6144808-T-A **
5967643-G-A 6099602-G-A **
5962422-C-A 6094381-C-A **
5911820-G-A 6043779-G-A **
5800220-A-G 5932179-A-G **
5793755-G-T 5925714-G-T **
5793571-G-T 5925530-G-T **
5771763-C-G 5903722-C-G **
5755227-C-A 5887186-C-A **
5688357-A-G 5820316-A-G **
5562487-C-A 5694446-C-A **
5522293-G-T 5654252-G-T **
5522180-ACCAG-A 5654139-ACCAG-A **
5446940-C-A 5578899-C-A **
2948418-A-T 3080377-A-T **
2852510-C-A 2984469-C-A **
7131391-C-A 7263350-C-A **
22277837-T-C 20115951-T-C DYZ19 **
2775381-C-A 2907340-C-A **
15049432-C-A 12937523-C-A **
10744864-C-A **
7142760-C-A 7274719-C-A **
10988443-C-T **
3550568-A-C 3682527-A-C **
6356284-C-A 6488243-C-A **
5022000-G-A 5153959-G-A **
20840248-C-A 18678362-C-A P4_Gap **
15209257-C-A 13097343-C-A **
18867266-C-A 16755386-C-A **
6791734-A-C 6923693-A-C **
10972648-C-T **
56850912-G-T **
10987242-CTTT-C **
14033895-C-A 11913189-C-A **
18924972-C-A 16813092-C-A **
22467684-G-A 20305798-G-A BY15703 DYZ19 **
22467682-A-G 20305796-A-G DYZ19 **
15604668-C-A 13492788-C-A ****
15410598-C-A 13298718-C-A **
14512963-C-A 12401168-C-A **
13868658-T-A 11747952-T-A **
6268765-T-A 6400724-T-A IR3_Dst **
16172237-G-C 14060357-G-C CTS5265 ****
3112253-C-T 3244212-C-T BY57430 **
13602280-G-A 11446604-G-A **
14635720-C-A 12523789-C-A **
6268767-C-A 6400726-C-A IR3_Dst 16×A**
15198636-C-A 13086722-C-A **
10893797-C-A **
2842951-C-T 2974910-C-T **
8119312-C-A 8251271-C-A **
2806188-C-T 2938147-C-T **
2805388-G-A 2937347-G-A **
2785950-A-G 2917909-A-G **
2746044-C-T 2878003-C-T FGC24108 **
2690812-TAG-T 2822771-TAG-T **
15712041-C-A 13600161-C-A **
15712052-C-A 13600172-C-A **
3606329-C-A 3738288-C-A **
22864502-A-G 20702616-A-G **
23476336-G-A 21314450-G-A **
4371929-C-A 4503888-C-A **
5868203-C-A 6000162-C-A **
22979325-C-A 20817439-C-A **
10987276-A-T **
15424344-A-G 13312464-A-G **
10987244-T-TACA **
7152977-C-A 7284936-C-A **
27872565-G-A 25726418-G-A P1_Y2 **
15764268-C-A 13652388-C-A **
24013847-CTATATATATATATATATATATATATA-C 21867700-CTATATATATATATATATATATATATA-C 21×TA**
18928831-C-A 16816951-C-A **
21308876-C-A 19146990-C-A **
28623225-C-A 26477078-C-A **
9810942-C-A 9973333-C-A **
16920101-T-G 14808221-T-G **
17038319-C-T 14926439-C-T 13×T**
17158997-GAC-G 15047117-GAC-G **
22703594-TCAA-T 20541708-TCAA-T **
16831045-C-A 14719165-C-A **
7125067-GT-G 7257026-GT-G **
5936682-G-T 6068641-G-T **
7134696-C-A 7266655-C-A **
9124288-G-T **
9810939-T-A 9973330-T-A Y31732 **
9735714-A-T 9898105-A-T IR3_Prx **
13213621-C-A 11057945-C-A **
9538052-G-C 9700443-G-C IR3_Prx **
9519248-C-A 9681639-C-A **
9465318-C-A 9627709-C-A **
9424615-GG-A 9587006-GG-A **
13216449-C-A 11060773-C-A **
9094627-C-A 9257018-C-A **
8968487-G-T 9130878-G-T **
8812621-G-T 8944580-G-T **
9859159-C-A 10021550-C-A **
8746347-C-A 8878306-C-A **
8734402-A-G 8866361-A-G **
8689488-C-A 8821447-C-A **
8481472-A-G 8613431-A-G **
8261148-G-A 8393107-G-A **
8218250-C-A 8350209-C-A **
8218222-C-A 8350181-C-A **
10880219-T-C **
8135651-T-A 8267610-T-A **
8129944-T-A 8261903-T-A **
8076148-C-A 8208107-C-A **
9810943-T-C 9973334-T-C **
9952176-C-A 10114567-C-A **
8052602-G-A 8184561-G-A **
10769791-C-T **
10880175-T-G **
10893801-C-A **
10914807-T-A **
10940500-C-A **
10872012-T-A **
10871125-T-C **
10862064-C-A **
10858715-G-T **
10821956-C-G **
10821942-C-CGGAAG **
10746927-C-G **
11031535-C-A **
10746920-T-TGACAA **
10685865-G-T **
10664632-CTCCAT-C **
10662176-G-A **
10654456-C-T **
10943869-C-A **
10626443-C-A **
10051307-T-C 10213698-T-C **
10996468-C-A **
9960036-T-C 10122427-T-C **
11014524-C-CTCCATTGAAT **
8073485-C-G 8205444-C-G **
8159512-T-A 8291471-T-A **
10880703-C-A **
7401068-C-T 7533027-C-T MF3027 **
13329247-T-A 11173571-T-A **
7201992-T-A 7333951-T-A **
7248700-C-A 7380659-C-A **
7418361-G-C 7550320-G-C **
7258957-A-G 7390916-A-G **
7418352-A-G 7550311-A-G **
7409815-C-A 7541774-C-A **
7275003-C-A 7406962-C-A **
7462641-C-A 7594600-C-A IR1_L **
7282784-C-A 7414743-C-A **
7285581-A-C 7417540-A-C **
7400290-G-T 7532249-G-T **
7316662-A-T 7448621-A-T **
7396445-C-A 7528404-C-A **
13313093-C-A 11157417-C-A **
7390748-C-A 7522707-C-A **
7342056-G-T 7474015-G-T **
7201983-T-A 7333942-T-A **
7469809-C-A 7601768-C-A IR1_L **
7469837-C-A 7601796-C-A IR1_L **
7592377-C-A 7724336-C-A **
8014977-A-G 8146936-A-G **
7185680-C-A 7317639-C-A **
8008809-A-T 8140768-A-T **
7136880-A-G 7268839-A-G **
7153843-C-A 7285802-C-A **
13235032-C-A 11079356-C-A **
13224207-G-A 11068531-G-A **
7991069-C-A 8123028-C-A **
7927919-C-A 8059878-C-A **
13467764-C-A 11312088-C-A ***
22768335-C-A 20606449-C-A ***
13512479-AT-A 11356803-AT-A ***
13652346-C-A 11496670-C-A ***
2752707-C-A 2884666-C-A ***
16692050-T-A 14580170-T-A ***
13469864-C-A 11314188-C-A ***
13448848-C-A 11293172-C-A ***
13453029-C-A 11297353-C-A ***
28777991-C-A 26631844-C-A ***
56834813-T-C ***
13481043-C-A 11325367-C-A ***
28780405-C-A 26634258-C-A ***
11643723-T-TGATTCAACAC ***
22815525-T-TA 20653639-T-TA ***
24108202-G-A 21962055-G-A P3_b1 ***
22972892-G-A 20811006-G-A ***
25356709-C-T 23210562-C-T P2_r2 ***
22469405-C-G 20307519-C-G DYZ19 ***
24219437-G-T 22073290-G-T P3_b1 ***
24770305-G-T 22624158-G-T P3_b2 ***
24972344-C-T 22826197-C-T g1 ***
25099740-C-T 22953593-C-T g1 ***
22343744-C-T 20181858-C-T DYZ19 ***
22283616-T-G 20121730-T-G DYZ19 ***
25115069-G-A 22968922-G-A g1 ***
22277527-C-A 20115641-C-A DYZ19 ***
25189696-G-A 23043549-G-A g1 ***
22262036-A-C 20100150-A-C DYZ19 ***
22248638-T-G 20086752-T-G DYZ19 ***
23188186-G-T 21026300-G-T ***
13254442-C-A 11098766-C-A ***
25829121-G-T 23682974-G-T P1_b3 ***
13298536-C-A 11142860-C-A ***
24071487-G-T 21925340-G-T P3_b1 ***
13310205-C-A 11154529-C-A ***
24050338-G-T 21904191-G-T P3_b1 ***
13202747-C-A 11047071-C-A ***
28514005-C-A 26367858-C-A ***
22303350-C-T 20141464-C-T DYZ19 ***
24166837-T-C 22020690-T-C P3_b1 ***
23503790-C-A 21341904-C-A ***
13194629-C-A 11038953-C-A ***
24770480-C-T 22624333-C-T P3_b2 ***
9941592-T-C 10103983-T-C ***
9427698-G-T 9590089-G-T ***
17913519-C-A 15801639-C-A ***
18708999-C-A 16597119-C-A ***
18706859-C-A 16594979-C-A 11×A***
8020516-C-T 8152475-C-T ***
7857001-C-A 7988960-C-A ***
7760232-G-T 7892191-G-T ***
7754319-C-A 7886278-C-A ***
7754270-C-A 7886229-C-A ***
7648988-C-A 7780947-C-A ***
15742077-G-A 13630197-G-A ***
7452667-G-T 7584626-G-T IR1_L ***
15791599-C-T 13679719-C-T ***
17951095-A-G 15839215-A-G ***
13453660-TTCCATTCCATTCCAT-T,TTCCATTCCATTCAAG 11297984-TTCCATTCCATTCCAT-T,TTCCATTCCATTCAAG ***
8095522-T-A 8227481-T-A ***
17755815-A-G 15643935-A-G ***
17718537-G-A 15606657-G-A ***
17630902-C-A 15519022-C-A ***
16077484-G-A 13965604-G-A ***
6795122-C-A 6927081-C-A ***
17313122-C-A 15201242-C-A BY38454 ***
17313119-C-A 15201239-C-A ***
7191784-C-A 7323743-C-A ***
7166763-T-C 7298722-T-C ***
7046101-T-G 7178060-T-G ***
16455339-C-A 14343459-C-A ***
7075954-C-A 7207913-C-A ***
7076702-C-A 7208661-C-A ***
8094439-C-A 8226398-C-A ***
18972987-C-A 16861107-C-A ***
23377709-C-A 21215823-C-A ***
14494599-C-T 12382796-C-T ***
13848263-G-A 11727557-G-A ***
13860312-T-C 11739606-T-C ***
10875826-C-A ***
22128509-CTTA-C 19966623-CTTA-C 5×TTA***
4241524-C-A 4373483-C-A ***
56835477-T-C ***
10659188-TC-T ***
10659182-TTCCA-T ***
10657271-A-ATTCTG ***
18695803-C-A 16583923-C-A ***
21300093-GA-G 19138207-GA-G ***
21300019-G-T 19138133-G-T ***
14816087-C-A 12704158-C-A ***
15320721-G-AGAA 13208839-G-AGAA ***
21200816-C-A 19038930-C-A ***
16506577-C-A 14394697-C-A ***
9874244-G-T 10036635-G-T ***
14527348-C-A 12415549-C-A ***
20839647-T-C 18677761-T-C P4_Gap ***
20640239-G-T 18478353-G-T P4_Prx ***
14591755-C-A 12479955-C-A ***
2861524-G-T 2993483-G-T ***
14806127-C-A 12694198-C-A ***
9420475-C-A 9582866-C-A ***
3267555-C-A 3399514-C-A ***
19312152-C-A 17200272-C-A ***
15012186-A-T 12900274-A-T ***
13453891-T-A 11298215-T-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: E21000*1060000077000007800000
Kit: E21000917014075137717445289
Used in age calculations1060000077000007800000
Counts of SNPs2530
Variant counts last updated 2018-09-14 22:42:19.

* BED data not available. Using default values.


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