Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > BY3289 > Y6954

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B118423
BigY2
B118423
19623929-G-T 17512049-G-T P5_Prx ***A*
25521873-T-G 23375726-T-G P1_gr1 ***A*
22282294-A-C 20120408-A-C DYZ19 ***A*
19666047-C-A 17554167-C-A P5_Prx ***A*
23716346-T-A 21554460-T-A ***A*
26199732-A-G 24053585-A-G P1_Y1 ***A*
22455489-A-G 20293603-A-G DYZ19 ***A*
26252259-C-G 24106112-C-G P1_Y1 ***A*
26402588-G-C 24256441-G-C P1_Y1 ***A*
20780936-G-A 18619050-G-A P4_Prx ***A*
16050690-C-G 13938810-C-G Y95400 YY++
16908019-C-G 14796139-C-G Y97655 YY++
17341238-T-C 15229358-T-C Y98854 YY++
17363607-C-G 15251727-C-G YY++
17689443-A-G 15577563-A-G YY++
18251082-T-C 16139202-T-C ZS8820 Y++
18401336-T-C 16289456-T-C Y101904 P6_Gap ++
19357213-T-C 17245333-T-C Y104483 YY++
19551214-C-T 17439334-C-T Y105115 Y++
22440448-C-A 20278562-C-A DYZ19 ++
22206509-G-A 20044623-G-A Y108702 YY++
15707515-G-A 13595635-G-A Y94508 YY++
22440455-A-G 20278569-A-G DYZ19 ++
22457837-T-A 20295951-T-A DYZ19 ++
22811603-T-C 20649717-T-C Y109838 Y**+
22943910-G-T 20782024-G-T Y110196 YY++
23514744-C-T 21352858-C-T Y111753 YY++
24390964-T-C 22244817-T-C Y++
25466697-CAGA-C 23320550-CAGA-C P2_r2 5×AGA+
15929471-G-T 13817591-G-T YY++
22459564-G-T 20297678-G-T DYZ19 ***+
15664844-G-A 13552964-G-A PH1796 YY++
7667641-A-C 7799600-A-C Y84614 YY++
22436581-G-A 20274695-G-A DYZ19 **+
22520110-A-T 20358224-A-T SK78 Y++
9827264-AT-A 9989655-AT-A 10×T++
15144143-G-T 13032230-G-T Y93125 YY++
3626146-A-C 3758105-A-C **+
6842302-G-A 6974261-G-A Y82664 YY++
7387897-C-A 7519856-C-A Y84048 YY++
3626124-T-C 3758083-T-C **+
7883079-C-A 8015038-C-A Y85254 YY++
8498332-C-G 8630291-C-G Y87105 YY++
9396143-A-G 9558534-A-G Y88905 YY++
9444316-A-T 9606707-A-T Y88992 YY++
8536369-G-A 8668328-G-A Y87203 YY++
13671983-T-A 11516307-T-A Y89619 ++
8082477-G-A 8214436-G-A Y85791 YY++
23842055-T-TA 21680169-T-TA 9985496-G-A 11×A*
22280570-G-T 20118684-G-T DYZ19 ****
20700549-A-G 18538663-A-G P4_Prx ****
22317379-G-T 20155493-G-T DYZ19 ****
15352835-C-A 13240954-C-A **
15323678-AA-C 13211796-AA-C **
15210941-T-A 13099027-T-A **
16020756-T-C 13908876-T-C **
16020736-A-G 13908856-A-G **
15111468-C-A 12999555-C-A **
16018951-T-C 13907071-T-C **
16045013-C-A 13933133-C-A **
16000614-G-T 13888734-G-T **
15986650-C-A 13874770-C-A **
15957737-T-C 13845857-T-C **
15397130-G-T 13285250-G-T **
15957736-C-T 13845856-C-T **
15920921-C-A 13809041-C-A **
16037243-C-A 13925363-C-A **
15843086-A-G 13731206-A-G **
15420073-C-A 13308193-C-A **
15843050-A-G 13731170-A-G **
16065271-G-T 13953391-G-T **
15734212-C-A 13622332-C-A **
15576854-A-G 13464974-A-G **
15756583-GA-G 13644703-GA-G **
15839632-A-T 13727752-A-T **
15842835-A-T 13730955-A-T **
15843054-A-G 13731174-A-G **
15536324-G-T 13424444-G-T **
15843063-C-A 13731183-C-A **
15606725-C-A 13494845-C-A **
15558109-A-G 13446229-A-G **
15843064-A-G 13731184-A-G **
15843067-G-C 13731187-G-C **
15616650-T-C 13504770-T-C **
15843093-G-A 13731213-G-A **
16060430-G-A 13948550-G-A **
16987712-C-A 14875832-C-A **
16095876-C-A 13983996-C-A **
17491974-C-A 15380094-C-A **
17135720-C-A 15023840-C-A **
17263063-C-A 15151183-C-A **
17313482-C-A 15201602-C-A **
17372038-G-A 15260158-G-A **
17373134-G-T 15261254-G-T **
17374129-C-T 15262249-C-T **
17524013-C-A 15412133-C-A **
17078706-C-T 14966826-C-T FGC76125 Y98134 **
17552132-A-G 15440252-A-G **
17560545-C-A 15448665-C-A **
17672065-C-A 15560185-C-A **
17684336-C-A 15572456-C-A **
17714851-C-A 15602971-C-A **
17839917-G-A 15728037-G-A **
17104148-C-G 14992268-C-G **
17038697-C-A 14926817-C-A **
16320943-C-A 14209063-C-A **
16682682-G-A 14570802-G-A **
16413703-C-A 14301823-C-A **
16484278-T-C 14372398-T-C **
16505046-G-T 14393166-G-T **
16623603-G-T 14511723-G-T **
16635907-T-G 14524027-T-G **
16640254-T-C 14528374-T-C **
16707454-G-T 14595574-G-T **
16993478-C-A 14881598-C-A **
16826570-A-G 14714690-A-G **
16831069-T-G 14719189-T-G **
16842031-T-C 14730151-T-C **
16897640-T-G 14785760-T-G **
16932161-T-A 14820281-T-A **
14926419-C-T 12814484-C-T **
15076295-A-C 12964385-A-C **
14404867-G-A 12284164-G-A **
14926394-C-A 12814459-C-A **
13940932-A-G 11820226-A-G **
11673784-T-G **
11673789-T-G **
13860900-G-C 11740194-G-C **
13860983-C-A 11740277-C-A **
13871944-C-A 11751238-C-A **
13936317-C-G 11815611-C-G **
13941645-T-G 11820939-T-G **
11660019-A-G **
13941664-A-G 11820958-A-G **
13945223-C-T 11824517-C-T **
13959312-G-T 11838606-G-T **
13963371-C-A 11842665-C-A **
14031966-A-G 11911260-A-G **
14174913-T-C 12054207-T-C **
11673761-G-T **
11659138-A-C **
14200573-G-A 12079867-G-A **
13475582-G-A 11319906-G-A **
13319221-G-T 11163545-G-T **
13445388-G-GA 11289712-G-GA **
13446435-G-T 11290759-G-T **
13457527-C-T 11301851-C-T **
13460502-T-C 11304826-T-C **
13472106-C-A 11316430-C-A **
13522057-A-T 11366381-A-T **
11648398-T-A **
13577937-T-A 11422261-T-A **
13577942-T-G 11422266-T-G **
13577945-G-A 11422269-G-A **
13633282-A-T 11477606-A-T **
13644688-C-A 11489012-C-A **
13692788-T-A 11537112-T-A **
14180917-A-G 12060211-A-G **
14213167-C-A 12092461-C-A **
14926379-C-T 12814444-C-T **
14815891-C-A 12703962-C-A **
14648705-G-T 12536770-G-T **
14714725-C-A 12602792-C-A **
14738433-GTC-G 12626501-GTC-G **
14738452-A-T 12626520-A-T **
14785077-A-C 12673147-A-C **
14785087-T-A 12673157-T-A **
14912855-CCCT-C 12800922-CCCT-C **
14624306-T-C 12512506-T-C **
14926306-AC-A 12814371-AC-A **
14926324-G-A 12814389-G-A **
14926326-A-G 12814391-A-G **
14926328-T-G 12814393-T-G **
14926335-C-T 12814400-C-T **
14926356-G-A 12814421-G-A **
14624368-C-T 12512568-C-T **
14585747-C-A 12473947-C-A **
14224419-C-A 12103713-C-A **
14369098-C-A 12248394-C-A **
14226633-C-A 12105927-C-A **
14284659-C-G 12163953-C-G **
14324988-C-T 12204282-C-T Y15418 **
14328438-C-A 12207732-C-A **
14349279-T-G 12228574-T-G **
14351279-A-G 12230574-A-G **
14373697-T-A 12252993-T-A **
14585691-T-C 12473891-T-C **
17928287-C-A 15816407-C-A **
14405918-C-A 12285215-C-A **
14412920-T-C 12292217-T-C **
14502046-T-A 12390251-T-A **
14537948-C-A 12426149-C-A **
14549581-T-G 12437782-T-G **
14580839-GC-G 12469039-GC-G **
17870927-G-A 15759047-G-A **
19259116-A-G 17147236-A-G **
18098902-GCC-G 15987022-GCC-G **
24278035-T-A 22131888-T-A P3_b1 **
23415334-A-T 21253448-A-T **
23460474-A-C 21298588-A-C **
23475596-C-A 21313710-C-A **
23804288-A-T 21642402-A-T **
23822019-G-T 21660133-G-T **
24235453-C-G 22089306-C-G P3_b1 **
24280427-T-TC 22134280-T-TC P3_t1 **
23198044-G-A 21036158-G-A **
24466391-G-T 22320244-G-T **
24892952-G-T 22746805-G-T g1 **
24904574-C-A 22758427-C-A g1 **
25733067-A-C 23586920-A-C P1_b3 **
25881138-T-C 23734991-T-C P1_Y1 **
25998908-T-TC 23852761-T-TC P1_Y1 **
23345967-C-A 21184081-C-A **
23007371-G-T 20845485-G-T **
26415749-GTT-G 24269602-GTT-G P1_Y1 14×T**
22426995-G-T 20265109-G-T DYZ19 **
22166635-C-T 20004749-C-T **
22189116-C-A 20027230-C-A **
22201674-A-T 20039788-A-T **
22211297-C-A 20049411-C-A **
22218856-T-A 20056970-T-A DYZ19 **
22316359-T-G 20154473-T-G DYZ19 **
22541089-C-A 20379203-C-A **
22833857-C-A 20671971-C-A **
22619424-T-G 20457538-T-G **
22650946-A-G 20489060-A-G **
22768260-A-C 20606374-A-C **
22809797-TG-T 20647911-TG-T **
22820367-A-T 20658481-A-T **
22833824-C-A 20671938-C-A **
26047504-T-A 23901357-T-A P1_Y1 **
27548212-A-G 25402065-A-G P1_Y2 **
22135630-A-G 19973744-A-G **
28657557-C-A 26511410-C-A **
28623250-T-C 26477103-T-C **
28623301-A-C 26477154-A-C **
28623303-T-C 26477156-T-C **
28633205-G-A 26487058-G-A **
28635551-C-A 26489404-C-A **
28641039-C-A 26494892-C-A **
28660577-C-A 26514430-C-A **
28581637-A-G 26435490-A-G **
28748350-G-T 26602203-G-T **
28815147-T-G 26669000-T-G **
56836542-C-A **
56877852-CT-C **
6949-C-T **
11347-T-C **
28591828-C-A 26445681-C-A **
28550283-C-G 26404136-C-G **
27583177-G-T 25437030-G-T P1_Y2 **
27823609-C-A 25677462-C-A P1_Y2 **
27618156-A-T 25472009-A-T P1_Y2 **
27618158-A-C 25472011-A-C P1_Y2 **
27633793-T-C 25487646-T-C P1_Y2 **
27665354-G-GAA 25519207-G-GAA P1_Y2 **
27756200-A-G 25610053-A-G P1_Y2 **
27808856-A-AC 25662709-A-AC P1_Y2 **
28062655-C-T 25916508-C-T P1_Y2 **
28550247-G-T 26404100-G-T **
28062661-G-A 25916514-G-A P1_Y2 **
28070146-T-TAA 25923999-T-TAA P1_Y2 11×AC**
28459869-C-A 26313722-C-A **
28481325-A-C 26335178-A-C **
28492468-A-T 26346321-A-T **
28536149-T-C 26390002-T-C **
22166629-C-A 20004743-C-A **
22114633-C-A 19952747-C-A **
18098911-ATT-A 15987031-ATT-A **
19280812-T-C 17168932-T-C **
19013677-C-A 16901797-C-A **
19107419-T-A 16995539-T-A **
19107429-T-G 16995549-T-G **
19128716-T-A 17016836-T-A **
19202927-T-C 17091047-T-C **
13229824-T-C 11074148-T-C **
19286324-C-A 17174444-C-A **
18959209-C-G 16847329-C-G **
19286395-C-A 17174515-C-A **
19302765-G-T 17190885-G-T **
19393251-C-A 17281371-C-A **
19409887-C-A 17298007-C-A **
19544113-TC-T 17432233-TC-T **
19547755-T-C 17435875-T-C **
18970497-C-T 16858617-C-T **
18908108-GTGTA-G 16796228-GTGTA-G **
19879069-A-T 17767189-A-T P5_Prx **
18645925-C-A 16534045-C-A **
18189756-A-T 16077876-A-T **
18215767-C-A 16103887-C-A **
18290802-A-G 16178922-A-G P6_Prx **
18390101-A-G 16278221-A-G P6_Gap **
18422663-C-A 16310783-C-A P6_Gap **
18462502-G-T 16350622-G-T P6_Dst **
18687532-A-C 16575652-A-C **
18855426-G-T 16743546-G-T **
18687700-C-A 16575820-C-A **
18707164-T-A 16595284-T-A **
18711564-T-C 16599684-T-C **
18780534-C-A 16668654-C-A **
18789558-C-A 16677678-C-A **
18848364-G-T 16736484-G-T **
19575885-CCCTT-C 17464005-CCCTT-C P5_Prx **
20025441-CTCT-C 17913561-CTCT-C P5_Prx **
22018125-C-A 19856239-C-A **
21714759-A-ACAC 19552873-A-ACAC **
21346280-G-C 19184394-G-C **
21363204-T-G 19201318-T-G **
21604049-G-T 19442163-G-T **
21651719-T-C 19489833-T-C **
21670728-A-G 19508842-A-G **
21703122-C-A 19541236-C-A **
21818883-G-C 19656997-G-C **
21323514-G-A 19161628-G-A **
21905353-C-A 19743467-C-A **
21912191-T-C 19750305-T-C **
21934814-C-A 19772928-C-A **
21944765-G-T 19782879-G-T **
22011473-C-A 19849587-C-A **
22011486-A-G 19849600-A-G **
21323548-A-G 19161662-A-G **
21299158-C-A 19137272-C-A **
20105814-G-T 17993934-G-T P5_Dst **
21023142-G-A 18861256-G-A P4_Dst **
20332144-A-C 18170258-A-C P5_Dst **
20434784-T-AAA 18272898-T-AAA P5_Dst **
20506538-AAAAAAAG-A 18344652-AAAAAAAG-A P5_Dst **
20570242-C-A 18408356-C-A P5_Dst **
20954298-G-T 18792412-G-T P4_Dst **
20954369-T-A 18792483-T-A P4_Dst **
21049275-A-C 18887389-A-C **
21241753-A-C 19079867-A-C **
21082068-C-A 18920182-C-A **
21133555-TCAA-T 18971669-TCAA-T **
21141346-C-A 18979460-C-A **
21141354-C-A 18979468-C-A **
21154542-C-A 18992656-C-A **
21238237-C-A 19076351-C-A **
21241750-C-A 19079864-C-A **
13267431-C-CA 11111755-C-CA 16×A**
11020714-C-A **
13196001-T-C 11040325-T-C **
5775537-A-G 5907496-A-G **
6592382-A-T 6724341-A-T **
6359639-C-A 6491598-C-A **
6244234-C-G 6376193-C-G IR3_Dst 12×T**
6244228-GA-G 6376187-GA-G IR3_Dst **
6244218-C-T 6376177-C-T IR3_Dst **
6244213-C-T 6376172-C-T IR3_Dst **
6244206-A-G 6376165-A-G IR3_Dst **
6048219-G-T 6180178-G-T **
5916229-A-G 6048188-A-G **
5897590-G-C 6029549-G-C **
5869158-C-A 6001117-C-A **
5858428-A-T 5990387-A-T **
5844977-G-C 5976936-G-C **
5625623-G-A 5757582-G-A **
6825502-G-C 6957461-G-C **
5446367-T-A 5578326-T-A **
5446316-G-T 5578275-G-T **
5421825-G-T 5553784-G-T **
5358932-A-G 5490891-A-G **
5358573-C-A 5490532-C-A **
5336697-T-A 5468656-T-A 12×A**
5305839-C-A 5437798-C-A **
5249639-C-A 5381598-C-A **
5246839-C-A 5378798-C-A **
5246713-G-A 5378672-G-A **
5219218-C-A 5351177-C-A **
5219209-C-A 5351168-C-A **
5206351-C-A 5338310-C-A **
4957073-A-G 5089032-A-G **
6816546-GAAAAA-G 6948505-GAAAAA-G 22×A**
6901379-T-C 7033338-T-C **
4839477-C-A 4971436-C-A **
7281020-A-T 7412979-A-T **
8389614-G-A 8521573-G-A **
8389613-C-T 8521572-C-T **
8389608-G-GCT 8521567-G-GCT **
8216388-AT-A 8348347-AT-A 9×T**
8160178-C-CAA 8292137-C-CAA 20×A**
7646636-A-T 7778595-A-T **
7504750-T-C 7636709-T-C IR1_L **
7417527-T-A 7549486-T-A **
7417523-G-T 7549482-G-T **
7409700-A-G 7541659-A-G **
7310560-G-C 7442519-G-C **
7310552-G-T 7442511-G-T **
7301628-T-G 7433587-T-G **
7243794-C-A 7375753-C-A **
7033229-G-C 7165188-G-C **
7243738-C-A 7375697-C-A **
7241179-C-A 7373138-C-A **
7239642-A-T 7371601-A-T **
7237167-C-A 7369126-C-A **
7211340-T-C 7343299-T-C **
7199966-T-C 7331925-T-C **
7183736-T-C 7315695-T-C **
7142551-A-C 7274510-A-C **
7135248-A-G 7267207-A-G **
7099323-C-A 7231282-C-A **
7097362-A-T 7229321-A-T **
7088488-C-A 7220447-C-A **
7040692-A-G 7172651-A-G **
7033230-A-C 7165189-A-C **
4902063-T-A 5034022-T-A **
4834173-C-A 4966132-C-A **
8389666-CTG-C 8521625-CTG-C **
8389701-G-A 8521660-G-A **
2798915-G-T 2930874-G-T **
2729984-T-A 2861943-T-A **
2682331-A-T 2814290-A-T **
2669928-C-A 2801887-C-A **
2665757-C-A 2797716-C-A **
21394772-C-A 19232886-C-A **
10989448-T-TCCACA **
23623294-G-T 21461408-G-T **
7536479-C-A 7668438-C-A **
10666931-T-C **
18963860-C-A 16851980-C-A **
18855421-A-T 16743541-A-T **
9465138-C-CTG 9627529-C-CTG 15×TG**
8389656-C-G 8521615-C-G **
2884121-CT-C 3016080-CT-C **
8389655-G-A 8521614-G-A **
8389638-A-G 8521597-A-G **
4533729-C-A 4665688-C-A **
4008588-C-CA 4140547-C-CA 10×A**
23449176-C-A 21287290-C-A **
22508092-G-C 20346206-G-C DYZ19 *****
22218461-A-G 20056575-A-G DYZ19 **
18539082-C-A 16427202-C-A ****
20954373-G-A 18792487-G-A P4_Dst **
6917006-C-A 7048965-C-A **
18940714-C-T 16828834-C-T Z28740 **
16324120-C-T 14212240-C-T ZS882 **
8389619-C-G 8521578-C-G **
9852978-G-A 10015369-G-A BY22877 **
2833256-C-A 2965215-C-A **
3015862-T-C 3147821-T-C **
4808619-C-A 4940578-C-A **
4374404-A-G 4506363-A-G **
4806958-C-A 4938917-C-A **
4804569-A-G 4936528-A-G **
4755331-C-A 4887290-C-A **
4729910-A-G 4861869-A-G **
4688069-T-C 4820028-T-C **
4672399-C-A 4804358-C-A **
4662618-G-T 4794577-G-T **
4652664-G-T 4784623-G-T **
4647647-G-T 4779606-G-T **
4558836-C-A 4690795-C-A **
4558516-C-A 4690475-C-A **
4552763-G-T 4684722-G-T **
4496978-G-T 4628937-G-T **
4224437-A-C 4356396-A-C **
3091980-C-A 3223939-C-A **
4093382-C-A 4225341-C-A **
4064102-T-A 4196061-T-A **
4063205-T-G 4195164-T-G **
4003310-C-A 4135269-C-A **
3853167-G-T 3985126-G-T **
3853166-T-G 3985125-T-G **
3851764-C-A 3983723-C-A **
3818065-C-A 3950024-C-A **
3784171-G-T 3916130-G-T **
3659687-G-T 3791646-G-T **
3599062-T-C 3731021-T-C **
3491124-C-T 3623083-C-T **
3341457-C-A 3473416-C-A **
3296631-A-G 3428590-A-G **
8389663-C-CT 8521622-C-CT **
7223451-C-A 7355410-C-A **
16848-T-C **
10858510-A-T **
10889635-C-A **
10885723-TCCATTTC-T **
10883900-T-C **
10878950-A-T **
10868278-A-C **
10868262-G-T **
10864748-C-A **
10860800-C-A **
10858544-A-G **
10858522-A-C **
10858518-T-C **
10858512-T-G **
10858505-T-C **
10935750-A-C **
10858502-C-T **
10858501-T-A **
10858491-T-A **
10858462-T-TTACTA **
10858453-C-T **
10858445-T-C **
10858068-C-G **
10833490-C-A **
10831195-T-C **
10825149-C-A **
10823286-C-A **
10823205-T-G **
10809620-A-T **
10907119-G-T **
10937592-C-A **
10805457-T-C **
10998673-A-C **
13195999-G-C 11040323-G-C **
13195996-T-TC 11040320-T-TC **
13195986-T-C 11040310-T-C **
11034502-A-G **
11031375-T-C **
11031345-A-C **
11025416-C-A **
11022172-A-T **
11022112-A-C **
11021614-C-A **
11020866-A-G **
11014545-T-C **
11003823-C-T **
10992693-A-C **
10937634-C-A **
10992067-C-T **
10987733-C-G **
10971384-C-A **
10960397-C-A **
10958935-T-C **
10951971-C-A **
10951027-A-C **
10951018-T-C **
10948385-C-A **
10947626-C-T **
10944340-C-A **
10943483-CTCCAT-C **
10942917-C-A **
10809617-T-C **
10865962-C-A **
10801721-C-T **
9956399-G-T 10118790-G-T **
9094597-C-A 9256988-C-A **
10684053-C-G **
10663271-C-A **
10657474-T-C **
10655680-A-G **
10034079-C-A 10196470-C-A **
10023482-T-G 10185873-T-G **
10019915-G-A 10182306-G-A **
9075933-A-G 9238324-A-G **
9956406-T-A 10118797-T-A **
9891056-C-T 10053447-C-T **
10690719-T-A **
8792879-C-A 8924838-C-A **
9765825-C-A 9928216-C-A **
9735680-A-T 9898071-A-T IR3_Prx **
9700776-ATC-A 9863167-ATC-A IR3_Prx **
9693318-C-A 9855709-C-A IR3_Prx **
9689093-T-G 9851484-T-G IR3_Prx **
9562323-G-C 9724714-G-C IR3_Prx **
9562314-T-TG 9724705-T-TG IR3_Prx **
10792307-C-A **
9562310-A-T 9724701-A-T IR3_Prx 9×GT**
10687478-A-G **
9446232-A-G 9608623-A-G **
10693588-G-A **
10785155-T-A **
8720610-C-A 8852569-C-A **
10787663-C-A **
8793004-T-A 8924963-T-A **
10789798-A-C **
8974219-G-A 9136610-G-A **
10771105-T-G **
10789839-A-C **
10770079-T-C **
10761746-C-A **
8737894-A-G 8869853-A-G **
10757987-C-T **
10755884-A-G **
10750742-G-T **
8737963-C-A 8869922-C-A **
10747997-T-C **
8389673-T-C 8521632-T-C **
10791301-C-A **
8389693-A-G 8521652-A-G **
28497455-AGTATTGAAGCTCTCAACTTGATCTCTGG-A 26351308-AGTATTGAAGCTCTCAACTTGATCTCTGG-A ***
22489512-A-G 20327626-A-G DYZ19 ***
25211643-T-C 23065496-T-C P2_r1 ***
22489517-G-C 20327631-G-C DYZ19 ***
26606417-C-T 24460270-C-T P1_g2 ***
24164525-G-T 22018378-G-T P3_b1 ***
25222173-C-G 23076026-C-G P2_r1 ***
24240748-CT-C 22094601-CT-C P3_b1 ***
24827612-CTTAA-C 22681465-CTTAA-C P3_b2 ***
24894661-C-T 22748514-C-T g1 ***
25169682-G-A 23023535-G-A g1 ***
25037217-C-T 22891070-C-T g1 ***
24950076-G-A 22803929-G-A g1 ***
17019628-C-A 14907748-C-A ***
22489483-G-T 20327597-G-T DYZ19 ***
8644324-CAAAAAAAAAAAAAA-C 8776283-CAAAAAAAAAAAAAA-C 32×A******
22229871-C-A 20067985-C-A DYZ19 ***
56833160-CCATTG-C,CCACTG ***
56830047-C-A,G ***
56828953-TC-CT,T ***
8214881-TC-T,TT 8346840-TC-T,TT ***
6434921-TAAAA-T 6566880-TAAAA-T 20×A***
6284900-T-C 6416859-T-C IR3_Dst ***
11028171-A-G ***
22306357-A-G 20144471-A-G DYZ19 ***
20757662-CT-C 18595776-CT-C P4_Prx 8×T***
26891516-C-T 24745369-C-T P1_r3 ***
22219386-T-C 20057500-T-C DYZ19 ***
22244221-C-T 20082335-C-T DYZ19 ***
28581630-GATATAT-G,GATAT 26435483-GATATAT-G,GATAT 19×AT***
22303329-T-A 20141443-T-A DYZ19 ***
22305044-C-G 20143158-C-G DYZ19 ***
26670966-C-T 24524819-C-T P1_g2 ***
7368754-C-A 7500713-C-A ***
28795583-C-A 26649436-C-A ***
6792628-CAAAA-C,CA 6924587-CAAAA-C,CA 18×A***
7157184-G-T 7289143-G-T ***
22037544-C-A 19875658-C-A ***
10912448-G-A ***
14261398-G-T 12140692-G-T ***
16768526-G-A 14656646-G-A ***
21477147-C-A 19315261-C-A ***
14464165-ATTTT-A,ATTT 12343438-ATTTT-A,ATTT 18×T***
10748036-C-CGTTCTATTAGGGTTA ***
13996243-G-T 11875537-G-T ***
10760745-TTCCACTCCAC-T ***
10782953-T-A ***
15235480-ATTT-A 13123566-ATTT-A 13×T***
4928995-C-T 5060954-C-T ***
21043087-G-T 18881201-G-T ***
15198872-C-A 13086958-C-A ***
12730473-ATTTTTTT-A ***
10821853-G-A,T ***
7203735-T-A 7335694-T-A ***
13196461-A-T 11040785-A-T ***
13478194-G-A 11322518-G-A ***
13487795-G-C 11332119-G-C ***
13493961-A-G 11338285-A-G ***
19333251-G-T 17221371-G-T ***
8690242-C-G 8822201-C-G ***
10986726-C-A ***
7608540-TA-T,TAA 7740499-TA-T,TAA 17×A***
24415723-TA-T 22269576-TA-T ***
58979741-A-AATCTG,ATTCTG 56833594-A-AATCTG,ATTCTG ***
16279014-A-T 14167134-A-T ***
22660329-CTGG-C 20498443-CTGG-C ***
23777675-A-T 21615789-A-T ***
11001526-C-A ***
7704933-C-A 7836892-C-A ***
11001513-T-A ***
11001499-G-A ***
16271805-T-A 14159925-T-A ***
10968384-AGCGTG-A ***
22768341-G-A 20606455-G-A ***
16768535-C-T 14656655-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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