Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > A16 > BY20018

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
91257
BigY2
91257
25864183-G-T 23718036-G-T P1_Y1 ***A*
13695105-C-T 11539429-C-T A*
20021496-T-TTA 17909616-T-TTA P5_Prx 15×TAA*
3287098-C-T 3419057-C-T A*
18275629-T-C 16163749-T-C P6_Prx ***A*
28816996-T-A 26670849-T-A A*
13451272-C-A 11295596-C-A A*
17470009-T-G 15358129-T-G BY115024 YY++
18036553-G-A 15924673-G-A BY119355 YY+
19257115-A-G 17145235-A-G BY127710 YY++
8414957-T-TTG 8546916-T-TTG 9×TG****
15799119-CCTT-C 13687239-CCTT-C *
13489540-G-T 11333864-G-T *
16050996-CTCTTTCTTTCTTTCTT-C 13939116-CTCTTTCTTTCTTTCTT-C 16×TCTT*
16051006-CTTTCTT-C 13939126-CTTTCTT-C *
10842073-G-C **
10824038-A-G **
10804583-A-C **
10842111-C-T **
10849687-A-C **
56848724-G-C **
10884769-T-C **
10884778-A-G **
10884790-TTTATC-T **
10890408-C-A **
10903527-G-GCCTTGTCACATA **
10909179-T-A **
10909192-A-C **
10884798-A-G **
10781037-TATTCCATTCCATTCC-T **
10802468-C-G **
10045395-T-A 10207786-T-A **
9088848-G-A 9251239-G-A **
9313583-G-T 9475974-G-T **
9440569-A-T 9602960-A-T **
9442112-A-C 9604503-A-C **
9442146-A-C 9604537-A-C **
9492241-C-A 9654632-C-A **
9511561-G-C 9673952-G-C **
9941055-G-C 10103446-G-C **
9941066-CTGCTGAGTGTGATGCCTATCTGACCTCTCTA-C 10103457-CTGCTGAGTGTGATGCCTATCTGACCTCTCTA-C **
10071517-T-C 10233908-T-C **
10789229-C-A **
10749469-C-A **
10749776-C-A **
10750502-C-A **
10756435-A-G **
10767770-C-CCATT **
10776246-C-A **
10778848-C-A **
10909204-T-C **
10786993-C-A **
10909198-A-T **
11006725-C-A **
10952470-C-A **
11675647-G-A **
13692784-GGAATT-G 11537108-GGAATT-G **
11651455-T-C **
11653344-A-T **
11656332-C-T **
11656333-T-G **
11656344-T-C **
11656348-T-G **
11674351-G-C **
13798719-A-G 11678013-A-G **
13643563-T-G 11487887-T-G **
13846810-G-A 11726104-G-A **
13846825-T-C 11726119-T-C **
13854889-A-T 11734183-A-T **
13854891-C-T 11734185-C-T FGC51687 **
13855965-G-A 11735259-G-A FGC37463 **
13855966-A-C 11735260-A-C **
13855975-G-T 11735269-G-T **
13856232-C-A 11735526-C-A **
13644636-A-T 11488960-A-T **
13643561-T-A 11487885-T-A **
10952475-C-CACTCA **
13272985-T-A 11117309-T-A **
10952485-CA-C **
10982653-T-A **
10995818-C-A **
8815236-CT-C 8947195-CT-C **
11007462-C-A **
11027717-G-A **
11031679-T-C **
13272955-T-A 11117279-T-A **
13305718-A-G 11150042-A-G **
13611170-G-T 11455494-G-T **
13317184-C-A 11161508-C-A **
13364123-G-T 11208447-G-T **
13434591-G-A 11278915-G-A **
13442404-A-T 11286728-A-T **
13461573-G-A 11305897-G-A **
13461721-G-T 11306045-G-T **
13511658-A-G 11355982-A-G **
13596580-G-A 11440904-G-A **
13604298-T-G 11448622-T-G **
9119294-G-T **
8095445-T-A 8227404-T-A **
8671844-G-C 8803803-G-C **
5294627-A-T 5426586-A-T **
5172415-G-T 5304374-G-T **
5172426-A-C 5304385-A-C **
5190193-T-C 5322152-T-C **
5191556-T-C 5323515-T-C **
5191597-G-T 5323556-G-T **
5191598-G-T 5323557-G-T **
5230925-A-G 5362884-A-G **
5275813-T-C 5407772-T-C **
5409368-C-A 5541327-C-A **
4908249-A-G 5040208-A-G **
5577458-C-T 5709417-C-T **
5798272-G-T 5930231-G-T **
5818499-C-A 5950458-C-A **
5842702-G-A 5974661-G-A **
5968385-G-T 6100344-G-T **
5968406-G-T 6100365-G-T **
5990189-G-T 6122148-G-T **
6038201-G-A 6170160-G-A **
4922847-C-A 5054806-C-A **
4908064-C-A 5040023-C-A **
6279715-A-G 6411674-A-G IR3_Dst **
3899217-TTC-T 4031176-TTC-T **
3450204-C-A 3582163-C-A **
3467679-C-A 3599638-C-A **
3491618-A-T 3623577-A-T **
3560410-G-T 3692369-G-T **
3705306-C-A 3837265-C-A **
3754298-C-A 3886257-C-A **
10091798-T-G 10254189-T-G **
3834078-T-A 3966037-T-A **
3954468-G-T 4086427-G-T **
4836219-A-T 4968178-A-T **
3990477-C-A 4122436-C-A **
4088408-T-C 4220367-T-C **
4088429-A-C 4220388-A-C **
4088487-G-A 4220446-G-A **
4178846-G-A 4310805-G-A **
4357533-C-A 4489492-C-A **
4395662-C-A 4527621-C-A **
4548094-C-A 4680053-C-A **
4779969-C-A 4911928-C-A **
6243224-CACA-C 6375183-CACA-C IR3_Dst **
6352698-A-T 6484657-A-T **
8556194-A-G 8688153-A-G **
8058596-C-A 8190555-C-A **
7338639-T-A 7470598-T-A **
7338640-A-ATG 7470599-A-ATG **
7338827-C-A 7470786-C-A **
7362521-G-A 7494480-G-A **
7362526-G-A 7494485-G-A **
7362527-C-G 7494486-C-G **
7374314-T-TA 7506273-T-TA **
7541098-T-C 7673057-T-C **
8073424-T-A 8205383-T-A **
7240888-G-T 7372847-G-T **
8095419-C-T 8227378-C-T **
8095430-T-C 8227389-T-C **
8095433-T-A 8227392-T-A **
8095443-C-A 8227402-C-A **
13933151-C-A 11812445-C-A **
8095479-C-CAG 8227438-C-CAG **
8159238-G-A 8291197-G-A **
8290651-A-G 8422610-A-G **
7319154-C-CTCCTG 7451113-C-CTCCTG **
7222161-C-T 7354120-C-T **
6410914-C-A 6542873-C-A **
6637252-A-T 6769211-A-T **
6414932-A-G 6546891-A-G **
6453772-C-G 6585731-C-G **
6492823-C-A 6624782-C-A **
6495994-G-T 6627953-G-T **
6514511-G-T 6646470-G-T **
6516217-C-T 6648176-C-T **
6519327-A-T 6651286-A-T **
6593542-T-C 6725501-T-C **
6654147-C-A 6786106-C-A **
7163073-A-G 7295032-A-G **
6688199-G-T 6820158-G-T **
6756745-T-A 6888704-T-A **
6799188-C-A 6931147-C-A **
6882649-C-G 7014608-C-G **
6918497-C-A 7050456-C-A **
6977081-G-A 7109040-G-A **
7012708-A-G 7144667-A-G **
7048499-C-T 7180458-C-T **
7088001-C-A 7219960-C-A **
13919873-T-C 11799167-T-C **
14377705-G-T 12257001-G-T **
13975827-C-A 11855121-C-A **
22113604-CCT-C 19951718-CCT-C **
21148563-TGAACGAGCCTGGACTGAGACCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAA-T 18986677-TGAACGAGCCTGGACTGAGACCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAA-T **
21208860-G-A 19046974-G-A **
21408461-C-A 19246575-C-A **
21526831-C-A 19364945-C-A **
21670716-C-A 19508830-C-A **
21770182-T-A 19608296-T-A **
21846489-T-C 19684603-T-C **
21885846-A-C 19723960-A-C **
22171221-G-T 20009335-G-T **
21087043-A-T 18925157-A-T **
22351206-G-A 20189320-G-A DYZ19 **
22351231-T-G 20189345-T-G DYZ19 **
22351233-C-A 20189347-C-A DYZ19 **
22548250-G-T 20386364-G-T **
22551313-T-A 20389427-T-A **
22551317-A-G 20389431-A-G **
22551331-T-G 20389445-T-G **
22551363-T-G 20389477-T-G **
21118752-G-T 18956866-G-T **
20941155-T-G 18779269-T-G P4_Dst **
23038190-G-A 20876304-G-A **
20621719-T-TCCTGTCTCTTATA 18459833-T-TCCTGTCTCTTATA P4_Prx **
19884385-C-G 17772505-C-G P5_Prx **
19931670-G-T 17819790-G-T P5_Prx **
19931677-A-ACTGTC 17819797-A-ACTGTC P5_Prx **
20101822-A-G 17989942-A-G P5_Dst **
20280099-C-CT 18118213-C-CT P5_Dst **
20280102-TCCTTCCTTCC-T 18118216-TCCTTCCTTCC-T P5_Dst **
20280114-TC-T 18118228-TC-T P5_Dst **
20409123-T-TGACAG 18247237-T-TGACAG P5_Dst **
20625490-A-AT 18463604-A-AT P4_Prx **
20941131-T-G 18779245-T-G P4_Dst **
20661669-T-C 18499783-T-C P4_Prx **
20661743-T-G 18499857-T-G P4_Prx **
20667235-T-A 18505349-T-A P4_Prx **
20700646-A-ACT 18538760-A-ACT P4_Prx **
20809472-A-G 18647586-A-G P4_Gap **
20941078-T-A 18779192-T-A P4_Dst **
20941099-T-G 18779213-T-G P4_Dst **
20941107-A-G 18779221-A-G P4_Dst **
22851326-C-A 20689440-C-A **
23038208-T-C 20876322-T-C **
19612036-T-G 17500156-T-G P5_Prx **
28724976-C-A 26578829-C-A **
27821101-TG-T 25674954-TG-T P1_Y2 **
28234339-G-T 26088192-G-T P1_b4 **
28481095-T-A 26334948-T-A **
28536203-G-A 26390056-G-A **
28544369-C-A 26398222-C-A **
28699145-C-A 26552998-C-A **
28724882-G-C 26578735-G-C **
28724888-G-C 26578741-G-C **
28762580-C-A 26616433-C-A **
27633690-C-G 25487543-C-G P1_Y2 **
28779089-G-C 26632942-G-C **
28804450-A-C 26658303-A-C **
28804454-G-T 26658307-G-T **
56724773-G-C **
56823438-G-T **
56848689-T-G **
56848696-AG-A **
56848715-C-T **
27732477-A-AC 25586330-A-AC P1_Y2 **
26199615-G-GTATATA 24053468-G-GTATATA P1_Y1 **
23127643-A-G 20965757-A-G **
23570225-A-G 21408339-A-G **
23137098-T-C 20975212-T-C **
23145439-C-A 20983553-C-A **
23345769-G-T 21183883-G-T **
23364310-A-T 21202424-A-T **
23395678-G-A 21233792-G-A **
23419077-C-T 21257191-C-T **
23419079-C-G 21257193-C-G **
23419091-T-A 21257205-T-A **
23600157-T-C 21438271-T-C **
26101767-A-G 23955620-A-G P1_Y1 **
23801687-C-A 21639801-C-A **
24283438-A-T 22137291-A-T P3_t1 **
24623766-C-CCAG 22477619-C-CCAG P3_t2 **
24876936-G-T 22730789-G-T g1 **
25967685-G-GTTA 23821538-G-GTTA P1_Y1 13×T**
25967708-C-A 23821561-C-A P1_Y1 **
25973715-C-A 23827568-C-A P1_Y1 **
25973794-A-G 23827647-A-G P1_Y1 **
19884336-A-C 17772456-A-C P5_Prx **
19611998-T-C 17500118-T-C P5_Prx **
13995709-G-A 11875003-G-A **
16041042-T-C 13929162-T-C **
15655209-G-A 13543329-G-A **
15658117-C-T 13546237-C-T **
15762075-C-A 13650195-C-A **
15764164-C-A 13652284-C-A **
15823733-T-C 13711853-T-C **
15839515-A-C 13727635-A-C **
15937110-A-T 13825230-A-T **
16017134-C-A 13905254-C-A **
16046275-T-G 13934395-T-G **
15410566-G-C 13298686-G-C **
16171966-C-A 14060086-C-A **
16184185-G-T 14072305-G-T **
16357084-C-A 14245204-C-A **
16490041-A-G 14378161-A-G **
16588275-T-C 14476395-T-C **
16614790-T-C 14502910-T-C **
16662509-A-T 14550629-A-T **
16662554-C-T 14550674-C-T **
15446696-A-T 13334816-A-T **
15288078-A-G 13176177-A-G **
16662566-A-G 14550686-A-G **
14502616-T-G 12390821-T-G **
14180721-C-A 12060015-C-A **
14181108-G-A 12060402-G-A **
14278486-T-C 12157780-T-C **
14278558-A-C 12157852-A-C **
14278586-A-T 12157880-A-T **
3392497-G-T 3524456-G-T **
14427189-C-A 12306464-C-A **
14499543-T-C 12387748-T-C **
14502640-T-G 12390845-T-G **
15288024-T-A 13176123-T-A **
14555179-C-G 12443380-C-G **
14569814-A-G 12458014-A-G **
14574569-T-A 12462769-T-A **
14620822-T-A 12509020-T-A **
14688571-C-A 12576637-C-A **
14741974-C-T 12630042-C-T **
14780921-C-T 12668991-C-T **
15280333-C-A 13168432-C-A **
16662557-TTTCTC-T 14550677-TTTCTC-T **
16665459-T-TAC 14553579-T-TAC **
19610436-C-A 17498556-C-A P5_Prx **
19125587-C-A 17013707-C-A **
18990280-C-A 16878400-C-A **
19019969-G-A 16908089-G-A **
19019974-A-G 16908094-A-G **
19019986-A-G 16908106-A-G **
19019994-C-T 16908114-C-T **
19019995-T-A 16908115-T-A **
19043189-C-T 16931309-C-T **
19117325-T-C 17005445-T-C **
19246744-C-A 17134864-C-A **
18890996-T-C 16779116-T-C **
19246819-C-A 17134939-C-A **
19266687-C-A 17154807-C-A **
19331310-CTG-C 17219430-CTG-C **
19371985-GA-G 17260105-GA-G **
19376129-A-G 17264249-A-G **
19506988-C-A 17395108-C-A **
19509763-A-C 17397883-A-C **
19594896-C-A 17483016-C-A P5_Prx **
18926893-AAAAG-A 16815013-AAAAG-A **
18688383-A-C 16576503-A-C **
16665462-G-A 14553582-G-A **
17227760-G-T 15115880-G-T **
16728406-C-A 14616526-C-A **
16828971-A-C 14717091-A-C **
16842955-A-AC 14731075-A-AC **
16942154-C-T 14830274-C-T **
17069546-G-A 14957666-G-A **
17104071-C-A 14992191-C-A **
17130235-C-A 15018355-C-A **
17213548-C-A 15101668-C-A **
17428735-C-A 15316855-C-A **
18303354-T-TTCTG 16191474-T-TTCTG P6_Prx **
17430132-A-G 15318252-A-G **
17430514-A-G 15318634-A-G **
17600724-C-A 15488844-C-A **
17717088-C-A 15605208-C-A **
17859246-C-A 15747366-C-A **
17885798-C-T 15773918-C-T **
18100978-TTGTATAGTCAAGATAATCTTA-T 15989098-TTGTATAGTCAAGATAATCTTA-T **
18101945-C-A 15990065-C-A **
3443121-C-A 3575080-C-A **
3834076-A-C 3966035-A-C **
3390123-T-C 3522082-T-C **
17222618-C-A 15110738-C-A **
17926411-C-A 15814531-C-A **
6514140-C-A 6646099-C-A **
21912006-C-A 19750120-C-A **
8095345-C-A 8227304-C-A **
7045724-C-A 7177683-C-A **
14076699-G-A 11955993-G-A **
13487523-G-A 11331847-G-A Z22921 **
14180940-C-A 12060234-C-A **
5576739-C-A 5708698-C-A **
20259608-AACAAACAAAC-A 18097722-AACAAACAAAC-A P5_Dst **
10952472-T-C **
56848731-T-C **
17428225-C-A 15316345-C-A **
15368818-C-A 13256938-C-A **
19770262-C-A 17658382-C-A P5_Prx **
16220865-G-T 14108985-G-T **
15866268-C-A 13754388-C-A 43×A**
56842321-C-A **
11034823-C-G **
28468713-C-A 26322566-C-A **
13895924-C-A 11775218-C-A **
19272169-G-T 17160289-G-T **
2900794-C-A 3032753-C-A **
17188369-A-G 15076489-A-G **
10969741-C-A **
10759986-A-T **
11034847-T-G **
10908385-C-A **
11034861-T-A **
11034864-C-T **
11034883-C-T **
11034884-A-G **
11034895-C-G **
5586777-G-T 5718736-G-T **
2865807-G-T 2997766-G-T **
28703493-C-A 26557346-C-A **
6040189-C-A 6172148-C-A **
26098024-G-A 23951877-G-A P1_Y1 **
21244881-C-A 19082995-C-A **
13971640-G-A 11850934-G-A **
13971648-G-GA 11850942-G-GA **
56734832-A-G **
10776310-G-T **
15365195-G-A 13253315-G-A **
7306753-C-A 7438712-C-A **
17588612-C-A 15476732-C-A **
4756505-C-A 4888464-C-A **
22166537-T-TC 20004651-T-TC **
17115090-C-A 15003210-C-A **
7298832-C-A 7430791-C-A **
14371326-G-T 12250622-G-T **
5796751-C-A 5928710-C-A **
8741720-C-A 8873679-C-A **
15109427-C-CT 12997514-C-CT 8×T**
13971635-G-GAA 11850929-G-GAA **
10995758-C-A **
56861827-A-AAC **
23440359-C-A 21278473-C-A **
3436319-C-A 3568278-C-A **
14149367-T-G 12028661-T-G **
28762595-C-A 26616448-C-A **
22351208-T-G 20189322-T-G DYZ19 **
17464792-C-A 15352912-C-A **
15940292-G-A 13828412-G-A **
17370882-C-A 15259002-C-A **
4554712-C-A 4686671-C-A **
7214384-C-A 7346343-C-A **
20707738-C-A 18545852-C-A P4_Prx **
19884266-A-AG 17772386-A-AG P5_Prx **
10767717-G-A **
5458643-C-A 5590602-C-A **
7319149-C-A 7451108-C-A **
10841113-G-A **
3373976-A-G 3505935-A-G **
22564663-C-A 20402777-C-A **
14224265-C-CT 12103559-C-CT 10×T**
13611988-GTT-G 11456312-GTT-G 19×T**
18101951-G-C 15990071-G-C **
23186117-G-T 21024231-G-T FGC66887 **
56823295-TACACACACACAC-T 13×AC**
13631555-C-A 11475879-C-A **
10767748-A-T **
21346395-C-A 19184509-C-A **
18955798-C-A 16843918-C-A **
17544007-TA-T 15432127-TA-T 11×A**
58996159-T-TA 56850012-T-TA **
56839531-G-T **
10842088-T-C **
10842106-A-T **
17250889-C-A 15139009-C-A **
28764274-C-A 26618127-C-A **
10884777-C-A **
7142792-C-A 7274751-C-A **
22505410-A-T 20343524-A-T DYZ19 **
19075296-G-A 16963416-G-A Y103555 **
15475210-C-A 13363330-C-A **
4576612-C-A 4708571-C-A **
13855200-A-T 11734494-A-T **
23199745-GA-G 21037859-GA-G **
22351189-C-G 20189303-C-G DYZ19 **
5275813-T-TG 5407772-T-TG **
21363107-G-A 19201221-G-A **
16505988-C-CTT 14394108-C-CTT 31×T**
2915046-C-T 3047005-C-T **
17321175-T-G 15209295-T-G **
22351199-C-T 20189313-C-T DYZ19 **
21959283-C-A 19797397-C-A **
28628484-T-TTA 26482337-T-TTA 11×TA**
22253226-T-A 20091340-T-A DYZ19 **
8481312-TA-T 8613271-TA-T **
22351200-C-T 20189314-C-T DYZ19 **
20511001-G-T 18349115-G-T P5_Dst **
13457407-G-T 11301731-G-T **
9040925-A-ATATAT 9203316-A-ATATAT 17×AT**
24296172-T-TC 22150025-T-TC P3_t1 **
28804447-T-C 26658300-T-C **
10767761-C-G **
10999574-C-A **
10655178-C-A **
13480847-C-A 11325171-C-A **
10748199-C-A **
10757004-C-A **
22342081-A-T 20180195-A-T DYZ19 **
14530831-C-A 12419032-C-A **
10956593-C-G **
10912197-A-G **
10912224-A-T **
21574498-G-GT 19412612-G-GT 10×T**
10808608-T-A **
7257880-C-A 7389839-C-A **
14007564-C-A 11886858-C-A **
14934304-TTC-T 12822369-TTC-T **
10956600-A-AATTCAATCGT **
7990592-C-A 8122551-C-A **
56861816-A-AAAC **
14977296-CTTTT-C 12865371-CTTTT-C 15×T**
17006261-CTTTTT-C 14894381-CTTTTT-C 17×T**
22816364-C-T 20654478-C-T **
14743892-C-A 12631961-C-A **
7861502-C-A 7993461-C-A **
21363124-G-A 19201238-G-A **
10912218-G-C **
13229703-C-A 11074027-C-A **
5446419-C-A 5578378-C-A **
10892021-C-A **
14227715-C-A 12107009-C-A **
10679167-C-A **
10767731-A-AAATCT **
3961392-TA-T 4093351-TA-T 8×A**
23144220-T-G 20982334-T-G **
7423823-C-A 7555782-C-A **
19610397-C-A 17498517-C-A P5_Prx **
17085848-C-A 14973968-C-A **
14457387-C-A 12336660-C-A 18×A**
13487528-C-T 11331852-C-T **
24876930-G-T 22730783-G-T g1 **
2795569-T-TAAA 2927528-T-TAAA **
9558400-G-T 9720791-G-T IR3_Prx **
18728835-C-A 16616955-C-A **
16938452-C-A 14826572-C-A **
19506891-C-A 17395011-C-A **
10971214-C-A **
17524129-C-A 15412249-C-A **
21824710-C-A 19662824-C-A **
2684697-C-A 2816656-C-A **
19275302-C-A 17163422-C-A **
6732629-C-A 6864588-C-A **
22352484-C-A 20190598-C-A DYZ19 **
10936244-C-A **
28520675-C-A 26374528-C-A **
7362540-G-A 7494499-G-A **
10925378-C-A **
18730863-C-A 16618983-C-A **
2881415-C-A 3013374-C-A **
10794795-C-A **
16729323-C-A 14617443-C-A **
2795583-T-TG 2927542-T-TG **
2795578-T-TG 2927537-T-TG **
13601913-C-A 11446237-C-A **
10982144-C-A **
13475525-G-T 11319849-G-T **
2795576-T-A 2927535-T-A **
14448042-C-A 12327315-C-A **
14427218-C-A 12306493-C-A **
24403258-C-A 22257111-C-A **
14006696-C-A 11885990-C-A **
10933569-C-A **
9926807-C-A 10089198-C-A **
21363131-G-A 19201245-G-A **
24290882-G-T 22144735-G-T P3_t1 **
6996642-C-A 7128601-C-A **
9959204-G-T 10121595-G-T **
22240963-T-TA 20079077-T-TA DYZ19 **
22090051-C-A 19928165-C-A **
21163118-C-A 19001232-C-A **
7362539-T-C 7494498-T-C **
7338625-G-A 7470584-G-A **
10682464-C-A **
11670902-C-A **
13603082-C-A 11447406-C-A **
19043781-A-G 16931901-A-G **
9508400-C-A 9670791-C-A **
16825099-C-A 14713219-C-A **
7782980-C-A 7914939-C-A **
6655071-C-A 6787030-C-A **
27837787-TTTTCC-T 25691640-TTTTCC-T P1_Y2 **
23983372-G-T 21837225-G-T **
10759991-A-G **
6102317-C-A 6234276-C-A **
15218763-G-T 13106849-G-T **
2773402-G-T 2905361-G-T **
10919516-G-T FT176 **
15785930-C-A 13674050-C-A **
10057986-C-A 10220377-C-A **
3111785-C-A 3243744-C-A **
8140365-C-A 8272324-C-A **
5871256-C-A 6003215-C-A **
14680794-GAAA-G 12568860-GAAA-G 15×A**
16700343-C-A 14588463-C-A **
4874956-G-T 5006915-G-T **
17717163-C-A 15605283-C-A **
19135170-C-A 17023290-C-A **
11007440-C-A **
5455143-C-A 5587102-C-A **
3707042-C-A 3839001-C-A **
15769128-C-A 13657248-C-A **
10827318-C-A **
10884808-T-A **
4087802-C-A 4219761-C-A **
2970098-T-G 3102057-T-G **
56848729-C-A **
6682205-C-A 6814164-C-A **
3013087-T-C 3145046-T-C **
14281095-C-A 12160389-C-A **
23185385-C-A 21023499-C-A **
13809386-C-A 11688680-C-A **
18212414-C-A 16100534-C-A **
3057978-G-T 3189937-G-T **
3078533-A-G 3210492-A-G **
8095551-T-C 8227510-T-C **
3105615-C-A 3237574-C-A **
2970018-C-G 3101977-C-G **
16417528-C-A 14305648-C-A **
14430571-C-A 12309844-C-A **
17648360-C-A 15536480-C-A **
28601805-C-A 26455658-C-A **
15126996-C-A 13015083-C-A **
16084182-G-T 13972302-G-T **
13421679-CTTT-C 11266003-CTTT-C 14×T**
16144797-T-TA 14032917-T-TA P8_Dst **
24671180-T-A 22525033-T-A P3_b2 **
10912266-G-T **
6279800-A-AG 6411759-A-AG IR3_Dst **
3271337-C-A 3403296-C-A **
2970076-T-G 3102035-T-G **
17605523-C-A 15493643-C-A **
16653150-C-A 14541270-C-A **
28015150-A-AG 25869003-A-AG P1_Y2 **
27916353-C-A 25770206-C-A P1_Y2 **
13919208-CAAAAAA-C 11798502-CAAAAAA-C 17×A**
14021236-C-A 11900530-C-A **
9928953-GCA-G 10091344-GCA-G **
2865724-G-T 2997683-G-T **
26097980-G-T 23951833-G-T P1_Y1 **
14250541-G-T 12129835-G-T **
13894144-C-A 11773438-C-A **
16075210-C-A 13963330-C-A **
22972738-C-G 20810852-C-G **
7320464-C-G 7452423-C-G **
8734978-C-A 8866937-C-A **
17002700-C-A 14890820-C-A **
27733738-A-G 25587591-A-G P1_Y2 **
22351224-G-T 20189338-G-T DYZ19 **
10792301-C-A **
28710737-C-A 26564590-C-A **
6264621-C-A 6396580-C-A IR3_Dst **
10767698-T-A **
19255475-C-A 17143595-C-A **
13596954-GT-G 11441278-GT-G **
10034263-G-T 10196654-G-T ***
10034262-C-T 10196653-C-T ***
23395658-A-T 21233772-A-T ***
13106254-G-T 10595740-G-T ***
24392359-T-C 22246212-T-C ***
10034293-T-C 10196684-T-C ***
14478917-C-T 12358186-C-T ***
15799116-CT-C 13687236-CT-C ***
10034287-C-A 10196678-C-A ***
3853793-C-A 3985752-C-A ***
24806913-A-G 22660766-A-G P3_b2 ***
10034271-G-C 10196662-G-C ***
25297258-G-C 23151111-G-C P2_r1 ***
56838383-C-A ***
56843651-C-A ***
13301617-CT-C 11145941-CT-C 8×T***
15909754-C-CATAT 13797874-C-CATAT 18×AT***
3334667-G-A 3466626-G-A ***
24194917-TAAC-T 22048770-TAAC-T P3_b1 ***
14159486-A-ATG 12038780-A-ATG 16×TG***
10034270-G-C 10196661-G-C ***
23702894-G-C 21541008-G-C ***
15799118-TC-CC,T 13687238-TC-CC,T ***
58977344-A-ACCATTCCATTCCATTCCATTCCATT 56831197-A-ACCATTCCATTCCATTCCATTCCATT 4×CCATT***
17950825-AATAT-A 15838945-AATAT-A 27×AT***
9451304-A-G 9613695-A-G ***
3545517-G-T 3677476-G-T ***
2915108-A-G 3047067-A-G ***
15799120-CTT-C 13687240-CTT-C ***
22238518-A-G 20076632-A-G DYZ19 ***
13681020-G-T 11525344-G-T ***
22290077-G-T 20128191-G-T DYZ19 ***
22238520-A-G 20076634-A-G DYZ19 ***
23120651-A-G 20958765-A-G ***
22238525-G-A 20076639-G-A DYZ19 ***
13480676-G-C 11325000-G-C ***
22238539-G-T 20076653-G-T DYZ19 ***
22238541-A-AG 20076655-A-AG DYZ19 ***
13523947-C-T 11368271-C-T ***
23395652-G-T 21233766-G-T ***
22238537-A-T 20076651-A-T DYZ19 ***
10982274-G-T ***
22237694-A-G 20075808-A-G DYZ19 ***
13850629-T-A 11729923-T-A ***
13475540-G-A 11319864-G-A ***
10661488-C-A ***
14548181-C-A 12436382-C-A ***
14376492-T-A 12255788-T-A ***
56829520-C-CATTCCATTCCAGTCT ***
14008778-GAA-G,GA 11888072-GAA-G,GA 25×A***
10908321-T-C ***
13859699-G-T 11738993-G-T ***
5698760-G-T 5830719-G-T ***
10937374-C-A ***
10753272-C-T ***
2740517-G-T 2872476-G-T ***
13850624-T-A 11729918-T-A ***
15403557-C-T 13291677-C-T ***
11000441-T-G ***
11012256-T-C ***
23395661-T-C 21233775-T-C ***
13209678-C-A 11054002-C-A ***
13320149-C-A 11164473-C-A ***
10781015-G-T ***
11652946-C-A ***
13579851-C-T 11424175-C-T ***
13579846-A-G 11424170-A-G ***
13579834-C-T 11424158-C-T ***
56833622-C-A ***
13472231-C-A 11316555-C-A ***
10670911-C-A ***
10661220-TACACG-T,TACACT ***
11643783-G-C ***
17321158-A-G 15209278-A-G ***
8125049-AAAGA-A,AAGAGAAGAG 8257008-AAAGA-A,AAGAGAAGAG ***
3606054-C-A 3738013-C-A ***
10916127-G-T ***
7111476-C-A 7243435-C-A ***
5170195-C-A 5302154-C-A ***
10880721-T-A ***
10934785-A-T ***
10934786-C-G ***
10934798-G-C ***
6434921-TAAAAAA-T,TAAAA 6566880-TAAAAAA-T,TAAAA 20×A***
22023201-CTT-C,CT 19861315-CTT-C,CT 20×T***
22253128-C-A 20091242-C-A DYZ19 ***
10786412-G-T ***
16467460-T-A 14355580-T-A ***
6693507-T-A 6825466-T-A ***
23981934-CTT-C,CTTT 21835787-CTT-C,CTTT 14×T***
3853846-CAT-C 3985805-CAT-C ***
18611712-T-C 16499832-T-C ***
18143831-C-T 16031951-C-T ***
13705521-G-C 11549845-G-C ***
3809552-AT-A 3941511-AT-A 9×T***
7106982-G-GCTCTCT 7238941-G-GCTCTCT 15×CT***
7396272-C-A 7528231-C-A ***
7244053-TTGTG-T 7376012-TTGTG-T 10×TG***
16545413-C-A 14433533-C-A ***
19071523-C-A 16959643-C-A ***
23395655-A-G 21233769-A-G ***
18738827-GTA-G 16626947-GTA-G 10×TA******

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 912571085939078997217988380
Kit: 91257996766280920487954837
Used in age calculations1085939080920487988380
Counts of SNPs33
Variant counts last updated 2019-05-11 10:44:54.



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