Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > S1051 > ~19996272-C-T > FGC14899

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
497330
BigY2
497330
20707163-G-A 18545277-G-A P4_Prx ***A*
6310545-T-G 6442504-T-G IR3_Dst ***A*
6339296-G-A 6471255-G-A IR3_Dst ***A*
19811351-C-T 17699471-C-T P5_Prx ***A*
22304936-C-G 20143050-C-G DYZ19 ***A*
22306179-C-T 20144293-C-T ZS7616 DYZ19 ***A*
22308251-C-A 20146365-C-A DYZ19 ***A*
13687308-A-C 11531632-A-C A*
6251235-C-G 6383194-C-G IR3_Dst ***A*
24335735-A-G 22189588-A-G P3_t1 ***A*
26203996-G-A 24057849-G-A P1_Y1 ***A*
13687692-G-T 11532016-G-T A*
22312926-G-A 20151040-G-A DYZ19 A*
15800720-A-G 13688840-A-G FGC22908 YY++
16373344-A-G 14261464-A-G FGC22910 YY++
14874992-G-A 12763062-G-A Y137272 YY++
14652370-G-A 12540435-G-A FGC22903 YY++
13209022-G-T 11053346-G-T FGC22895 ++
8157163-A-G 8289122-A-G FGC22893 YY++
6914718-G-A 7046677-G-A FGC60644 YY++
6907638-C-G 7039597-C-G FGC22891 YY++
18426526-G-C 16314646-G-C FGC60647 P6_Gap ++
17473821-T-TA 15361941-T-TA 10×A++
17168-G-T FGC78513 +
6145238-A-G 6277197-A-G FGC80303 IR3_Dst ++
25402991-A-C 23256844-A-C BY24866 P2_r2 +
21490120-G-A 19328234-G-A FGC60648 YY++
22239405-C-A 20077519-C-A FGC60649 DYZ19 ***+
22457913-C-G 20296027-C-G FGC60650 DYZ19 ++
22767192-A-G 20605306-A-G FGC22920 YY++
22796659-G-T 20634773-G-T FGC22921 YY++
23081758-T-C 20919872-T-C FGC22923 YY++
23761474-G-A 21599588-G-A FGC80304 Y++
28479401-C-T 26333254-C-T FGC22876 **+
14408600-G-T 12287898-G-T FGC60646 YY++
14316591-C-CT 12195885-C-CT 9×T****
22280670-A-C 20118784-A-C DYZ19 ****
28786015-GGATTGGAGTG-G,GGAGTGGAGTA 26639868-GGATTGGAGTG-G,GGAGTGGAGTA *
15914271-C-A 13802391-C-A **
15803514-T-C 13691634-T-C **
17318855-C-A 15206975-C-A **
15786601-G-T 13674721-G-T **
15786597-A-T 13674717-A-T **
15786589-T-C 13674709-T-C **
15756606-C-A 13644726-C-A **
15733765-T-A 13621885-T-A **
15730451-A-T 13618571-A-T **
15688943-G-T 13577063-G-T **
15496972-G-A 13385092-G-A **
15475310-G-A 13363430-G-A **
15379397-C-A 13267517-C-A **
15370886-C-A 13259006-C-A **
15365340-T-C 13253460-T-C **
17310963-T-A 15199083-T-A **
15333960-C-A 13222078-C-A **
15288081-C-A 13176180-C-A **
15158653-T-A 13046739-T-A **
15146378-T-A 13034465-T-A **
15059826-C-A 12947918-C-A **
15038331-G-T 12926421-G-T **
14942999-C-A 12831073-C-A **
14893984-G-T 12782050-G-T **
14718637-G-T 12606705-G-T **
14695591-G-T 12583657-G-T **
14639184-C-A 12527253-C-A **
17332576-C-A 15220696-C-A **
14624317-A-CAT 12512517-A-CAT **
15832272-G-A 13720392-G-A **
15832284-A-G 13720404-A-G **
17226087-C-T 15114207-C-T **
16667294-C-A 14555414-C-A **
16101979-A-T 13990099-A-T P8_Prx **
16221000-T-A 14109120-T-A **
16233353-C-A 14121473-C-A **
16245376-A-G 14133496-A-G **
16351556-C-A 14239676-C-A **
16427424-A-G 14315544-A-G **
16450468-G-T 14338588-G-T **
15858417-C-T 13746537-C-T Y69005 **
16514457-C-A 14402577-C-A **
16516388-C-A 14404508-C-A **
16590687-G-C 14478807-G-C **
14611845-C-A 12500051-C-A **
16666121-C-A 14554241-C-A **
15858406-C-A 13746526-C-A **
16048955-G-C 13937075-G-C **
15832365-T-C 13720485-T-C **
16827526-T-G 14715646-T-G **
15832340-C-T 13720460-C-T **
15832312-C-T 13720432-C-T **
16843031-C-A 14731151-C-A **
16874376-C-A 14762496-C-A **
16874833-C-A 14762953-C-A **
17023423-C-A 14911543-C-A **
17056006-G-A 14944126-G-A **
15832305-T-C 13720425-T-C **
17098858-C-A 14986978-C-A **
15832302-A-G 13720422-A-G **
15832285-G-A 13720405-G-A **
14622041-C-A 12510239-C-A **
14272537-C-A 12151831-C-A **
14553265-C-A 12441466-C-A **
13224541-C-A 11068865-C-A **
11673396-G-A **
13609553-C-A 11453877-C-A **
13567010-A-T 11411334-A-T **
13567009-G-T 11411333-G-T **
13510199-C-A 11354523-C-A **
13474859-G-A 11319183-G-A **
13422191-T-C 11266515-T-C **
13328787-C-A 11173111-C-A **
13291327-G-T 11135651-G-T FGC22896 **
13261741-G-T 11106065-G-T **
13249648-C-A 11093972-C-A **
13235532-A-G 11079856-A-G **
13227280-T-C 11071604-T-C **
13198604-T-G 11042928-T-G **
13872222-C-A 11751516-C-A **
11027109-C-T **
11026836-A-C **
11025230-C-G **
10992249-T-C **
10986540-G-A **
10980842-T-C **
10970706-C-G **
10962983-C-G **
10962899-A-G **
10958711-C-A FGC83130 **
10956858-A-G **
10932667-C-T **
10932574-C-A **
10932563-AC-A **
13836904-C-A 11716198-C-A **
13896789-A-T 11776083-A-T **
14540710-T-C 12428911-T-C **
14298019-G-A 12177313-G-A **
14539263-A-AG 12427464-A-AG **
14539252-G-T 12427453-G-T **
14501147-A-C 12389352-A-C **
14474439-C-A 12353708-C-A **
14461315-A-T 12340588-A-T **
14456047-G-A 12335320-G-A **
14449769-C-A 12329042-C-A **
14380344-C-A 12259640-C-A **
14354625-T-G 12233920-T-G **
14354382-C-A 12233677-C-A **
14351170-C-A 12230465-C-A **
14351041-A-G 12230336-A-G **
14308267-T-C 12187561-T-C **
14298008-C-T 12177302-C-T **
13898855-G-T 11778149-G-T **
17478822-A-G 15366942-A-G **
14251577-C-A 12130871-C-A **
14241910-C-A 12121204-C-A **
14218396-C-A 12097690-C-A **
14204470-G-T 12083764-G-T **
14157819-G-T 12037113-G-T **
14157606-G-T 12036900-G-T **
14036265-T-A 11915559-T-A **
14036016-C-A 11915310-C-A **
14025599-A-G 11904893-A-G **
13999188-T-G 11878482-T-G **
13993312-C-A 11872606-C-A **
13938666-A-G 11817960-A-G **
13929853-C-A 11809147-C-A **
17452708-G-T 15340828-G-T **
18579152-C-A 16467272-C-A **
17500819-G-T 15388939-G-T **
23881894-A-T 21720008-A-T **
25030386-G-C 22884239-G-C g1 **
24636482-T-C 22490335-T-C P3_t2 **
24634129-C-T 22487982-C-T P3_t2 **
24614176-T-C 22468029-T-C P3_t2 **
24614170-T-C 22468023-T-C P3_t2 **
24614159-T-C 22468012-T-C P3_t2 **
24604698-T-TG 22458551-T-TG P3_t2 **
24466055-C-T 22319908-C-T **
24407335-C-A 22261188-C-A **
24402484-C-A 22256337-C-A **
24386606-A-G 22240459-A-G **
24244624-T-A 22098477-T-A P3_b1 **
23884435-A-AG 21722549-A-AG **
23834754-C-A 21672868-C-A **
25990674-C-G 23844527-C-G P1_Y1 **
23373484-C-A 21211598-C-A **
23309488-T-A 21147602-T-A FGC22925 **
23274768-C-A 21112882-C-A **
23187704-G-A 21025818-G-A **
23187691-A-T 21025805-A-T **
22996029-AA-T 20834143-AA-T **
22972859-G-A 20810973-G-A **
22890193-C-A 20728307-C-A **
22874632-T-C 20712746-T-C **
22689949-T-G 20528063-T-G **
22639318-G-A 20477432-G-A **
22518532-G-A 20356646-G-A **
22517089-G-T 20355203-G-T **
25980186-C-CAAA 23834039-C-CAAA P1_Y1 **
26046000-T-C 23899853-T-C P1_Y1 **
22235670-A-T 20073784-A-T DYZ19 **
28691556-C-A 26545409-C-A **
59027000-G-A 56880853-G-A **
56850396-A-G **
56850391-T-C **
56850371-C-G **
56850369-A-C **
56842950-G-A **
56841694-C-T **
56841101-C-A **
56841044-C-A **
56835406-C-G **
28803674-T-A 26657527-T-A **
28768840-C-A 26622693-C-A **
28700686-CT-C 26554539-CT-C **
28691438-A-T 26545291-A-T **
26133131-C-A 23986984-C-A P1_Y1 **
28660745-A-G 26514598-A-G **
28632865-C-A 26486718-C-A **
28632837-A-T 26486690-A-T **
28629546-C-A 26483399-C-A **
28587135-C-T 26440988-C-T **
28542438-G-GC 26396291-G-GC **
28510451-G-T 26364304-G-T **
28499462-C-A 26353315-C-A **
28490991-C-A 26344844-C-A **
28479194-C-A 26333047-C-A **
28465640-C-A 26319493-C-A **
27585941-CA-C 25439794-CA-C P1_Y2 **
26355523-A-C 24209376-A-C P1_Y1 **
26242584-C-A 24096437-C-A P1_Y1 **
22235680-T-C 20073794-T-C DYZ19 **
22171524-T-C 20009638-T-C **
17575533-C-A 15463653-C-A **
18554495-A-T 16442615-A-T **
19464781-T-C 17352901-T-C **
19312280-T-A 17200400-T-A **
19270592-C-A 17158712-C-A **
19206710-G-C 17094830-G-C **
19009240-A-T 16897360-A-T **
18847793-T-C 16735913-T-C **
18814749-A-T 16702869-A-T **
18793608-A-G 16681728-A-G **
18780624-C-A 16668744-C-A **
18707207-C-A 16595327-C-A **
18654751-A-G 16542871-A-G **
18589700-T-A 16477820-T-A BY122399 **
10920282-C-A **
18511544-T-A 16399664-T-A P6_Dst **
19479060-C-A 17367180-C-A **
18286767-A-T 16174887-A-T P6_Prx **
18271073-C-A 16159193-C-A **
18271044-A-T 16159164-A-T **
18262013-C-T 16150133-C-T FT37398 **
18102036-C-A 15990156-C-A **
18054786-C-A 15942906-C-A **
17929011-C-T 15817131-C-T **
17928016-C-A 15816136-C-A **
17926485-C-A 15814605-C-A **
17923697-G-A 15811817-G-A **
17788875-C-A 15676995-C-A **
17700718-T-A 15588838-T-A **
17646775-C-A 15534895-C-A **
17620363-C-A 15508483-C-A **
19465877-C-A 17353997-C-A **
19558326-G-A 17446446-G-A **
22171321-G-A 20009435-G-A **
21368329-C-G 19206443-C-G **
22125690-C-A 19963804-C-A **
22080955-C-T 19919069-C-T **
22074027-TA-T 19912141-TA-T **
22051805-G-T 19889919-G-T **
21915799-C-A 19753913-C-A **
21905317-C-A 19743431-C-A **
21828420-T-C 19666534-T-C **
21818819-C-A 19656933-C-A **
21770067-T-A 19608181-T-A **
21522350-T-C 19360464-T-C **
21447764-T-G 19285878-T-G **
21408441-T-A 19246555-T-A **
21388662-T-C 19226776-T-C **
21346285-A-T 19184399-A-T **
19558374-T-G 17446494-T-G **
21255975-T-C 19094089-T-C **
21248162-C-T 19086276-C-T **
21225025-C-A 19063139-C-A **
21221292-C-A 19059406-C-A **
21201223-T-G 19039337-T-G **
21187315-C-A 19025429-C-A **
21182463-C-T 19020577-C-T BY162839 **
21139298-C-A 18977412-C-A **
21056424-G-T 18894538-G-T **
20707138-TG-T 18545252-TG-T P4_Prx **
20707134-A-T 18545248-A-T P4_Prx **
19810328-C-G 17698448-C-G P5_Prx **
19810321-T-G 17698441-T-G P5_Prx **
19677906-C-CTCT 17566026-C-CTCT P5_Prx **
10927003-C-A **
10880789-A-C **
10901169-A-C **
14537570-T-C 12425771-T-C **
3866023-T-A 3997982-T-A **
3838944-G-T 3970903-G-T **
3696594-G-C 3828553-G-C **
3595302-A-G 3727261-A-G **
3455610-C-A 3587569-C-A **
3412657-C-A 3544616-C-A **
3412653-C-A 3544612-C-A **
3225423-A-T 3357382-A-T **
3171902-CAA-C 3303861-CAA-C 13×A**
3108660-G-T 3240619-G-T **
2979123-C-T 3111082-C-T **
2790494-A-G 2922453-A-G **
18447642-G-TT 16335762-G-TT P6_Dst **
4065431-C-A 4197390-C-A **
15832306-T-C 13720426-T-C **
13934302-C-A 11813596-C-A **
28760266-C-A 26614119-C-A **
7996809-C-A 8128768-C-A **
4115665-T-C 4247624-T-C **
24634126-A-G 22487979-A-G P3_t2 **
6756826-C-A 6888785-C-A **
18928545-T-G 16816665-T-G **
8913412-G-T 9045371-G-T **
14313748-C-A 12193042-C-A **
16029138-C-A 13917258-C-A **
23484478-C-A 21322592-C-A **
3965709-G-T 4097668-G-T **
4156468-C-A 4288427-C-A **
16896563-T-A 14784683-T-A **
5073824-C-A 5205783-C-A **
5396831-G-A 5528790-G-A **
5292696-C-T 5424655-C-T **
5264184-G-T 5396143-G-T **
5235361-C-A 5367320-C-A **
5221020-G-T 5352979-G-T **
5221017-C-T 5352976-C-T **
5214482-C-A 5346441-C-A **
5185469-A-C 5317428-A-C **
5174286-C-A 5306245-C-A **
5127598-A-G 5259557-A-G **
5127131-T-C 5259090-T-C **
5123712-C-A 5255671-C-A **
4982027-C-A 5113986-C-A **
4240366-T-G 4372325-T-G **
4871856-TG-T 5003815-TG-T **
4804641-A-C 4936600-A-C **
4569660-G-T 4701619-G-T **
4557545-C-A 4689504-C-A **
4540601-A-G 4672560-A-G **
4494539-C-A 4626498-C-A **
4474471-A-T 4606430-A-T **
4474323-A-T 4606282-A-T **
10898705-T-C **
4444430-G-T 4576389-G-T **
4443519-C-A 4575478-C-A **
4397338-C-T 4529297-C-T **
21315016-C-A 19153130-C-A **
10010572-C-A 10172963-C-A **
5535109-C-A 5667068-C-A **
18190851-C-T 16078971-C-T **
19745021-A-G 17633141-A-G P5_Prx **
13226288-C-A 11070612-C-A **
5858487-C-A 5990446-C-A **
16424291-C-T 14312411-C-T FGC22911 **
19125693-T-C 17013813-T-C **
12370657-C-A **
9942931-C-A 10105322-C-A **
19183841-TTG-T 17071961-TTG-T **
16896567-T-A 14784687-T-A **
22011614-C-A 19849728-C-A **
15151501-TCAA-T 13039588-TCAA-T **
13483240-G-A 11327564-G-A **
22363071-C-A 20201185-C-A DYZ19 **
2649781-C-G 2781740-C-G **
13842622-G-A 11721916-G-A *****
9371355-T-C 9533746-T-C *****
18354233-AAAG-A 16242353-AAAG-A P6_Prx **
58996503-T-G 56850356-T-G **
22340052-C-A 20178166-C-A DYZ19 **
21486880-C-A 19324994-C-A **
18354252-A-AG 16242372-A-AG P6_Prx **
14300544-C-T 12179838-C-T BY194186 **
15364027-T-C 13252147-T-C **
18354216-AAG-A 16242336-AAG-A P6_Prx **
10093593-T-A 10255984-T-A **
22893304-C-T 20731418-C-T M8325 17×CTTT**
9591036-A-AC 9753427-A-AC IR3_Prx **
21201258-C-A 19039372-C-A **
15126789-C-A 13014876-C-A **
16274317-C-A 14162437-C-A **
8649809-T-A 8781768-T-A **
28766202-C-A 26620055-C-A **
15143616-C-A 13031703-C-A **
19248800-C-A 17136920-C-A **
27546782-C-T 25400635-C-T P1_Y2 **
7860113-C-A 7992072-C-A **
11666445-C-A **
3286376-C-A 3418335-C-A **
15173588-C-A 13061674-C-A **
21299354-C-A 19137468-C-A **
15786106-C-A 13674226-C-A **
15832313-T-C 13720433-T-C **
3833645-T-C 3965604-T-C **
13445377-AG-A 11289701-AG-A **
24302818-A-AG 22156671-A-AG P3_t1 **
18271050-A-G 16159170-A-G **
20707128-A-T 18545242-A-T P4_Prx **
7169927-C-A 7301886-C-A **
14743652-T-C 12631721-T-C **
5698737-G-T 5830696-G-T **
3965640-C-A 4097599-C-A **
21182461-C-T 19020575-C-T Y56296 **
14050754-C-A 11930048-C-A **
3407799-C-A 3539758-C-A **
16528209-C-A 14416329-C-A **
7166837-C-A 7298796-C-A **
5437657-C-A 5569616-C-A **
4456867-GT-G 4588826-GT-G **
5601043-T-C 5733002-T-C **
8677075-T-A 8809034-T-A **
9693320-C-A 9855711-C-A IR3_Prx **
9465316-A-G 9627707-A-G **
9313652-C-A 9476043-C-A **
9231555-T-A 9393946-T-A **
9089131-T-G 9251522-T-G **
9048133-G-A 9210524-G-A **
8850147-C-A 8982106-C-A **
8824170-G-T 8956129-G-T **
8746420-ATCAG-A 8878379-ATCAG-A **
8720292-G-T 8852251-G-T **
8713071-C-A 8845030-C-A **
8351664-G-A 8483623-G-A **
9822838-G-T 9985229-G-T **
8279908-T-C 8411867-T-C **
8253756-AA-G 8385715-AA-G **
8022696-A-T 8154655-A-T **
7996924-C-A 8128883-C-A **
7709374-A-G 7841333-A-G **
7670881-C-A 7802840-C-A **
7562110-A-T 7694069-A-T **
7423978-C-T 7555937-C-T **
7383679-C-A 7515638-C-A **
7358274-G-A 7490233-G-A **
7329417-T-G 7461376-T-G **
9813455-T-A 9975846-T-A **
9832436-C-G 9994827-C-G **
7310609-G-T 7442568-G-T **
10678197-C-T **
10879596-A-T **
10850638-T-C **
10848196-C-A **
10826955-A-C **
10812604-C-A **
10806099-C-A **
10803196-C-A **
10801007-T-A **
10800996-AC-A **
10770116-C-A **
10753636-C-CTCTTT **
10661909-C-T **
9865308-C-A 10027699-C-A **
10647987-C-A **
10647889-C-A **
10061832-T-TTCTC 10224223-T-TTCTC **
10061758-A-C 10224149-A-C **
10032819-A-G 10195210-A-G **
10032720-C-A 10195111-C-A **
10010595-G-A 10172986-G-A **
9978958-C-G 10141349-C-G **
9961297-G-T 10123688-G-T **
9899459-A-G 10061850-A-G **
9891103-T-G 10053494-T-G **
9891038-G-T 10053429-G-T **
7321900-C-A 7453859-C-A **
9079056-G-T 9241447-G-T **
7303789-T-C 7435748-T-C **
6428561-C-A 6560520-C-A **
6953415-C-A 7085374-C-A **
6943983-T-TC 7075942-T-TC **
6918391-C-A 7050350-C-A **
6663114-A-G 6795073-A-G **
6626840-C-A 6758799-C-A **
6615050-TG-T 6747009-TG-T **
6584985-A-G 6716944-A-G **
6523694-T-C 6655653-T-C **
7281694-A-T 7413653-A-T **
6428600-G-T 6560559-G-T **
6387307-C-A 6519266-C-A **
7039193-C-A 7171152-C-A **
6347788-A-AAGAG 6479747-A-AAGAG **
6330360-G-T 6462319-G-T IR3_Dst **
6226160-G-T 6358119-G-T IR3_Dst **
6180253-T-C 6312212-T-C IR3_Dst **
5856961-C-A 5988920-C-A FGC60643 **
5840359-G-T 5972318-G-T **
5826907-C-A 5958866-C-A **
5757262-G-T 5889221-G-T **
5757216-G-T 5889175-G-T **
5613329-C-A 5745288-C-A **
5603496-T-A 5735455-T-A **
6978152-C-A 7110111-C-A **
6445772-C-A 6577731-C-A **
7225762-TA-T 7357721-TA-T 8×A**
7043570-T-C 7175529-T-C **
7240275-C-A 7372234-C-A FGC60645 **
7075008-G-T 7206967-G-T **
7123545-C-A 7255504-C-A **
7143493-T-C 7275452-T-C **
7242704-C-A 7374663-C-A **
7257019-C-A 7388978-C-A FGC60642 **
7102502-C-G 7234461-C-G **
7199870-C-A 7331829-C-A **
7208097-TG-T 7340056-TG-T **
7042716-G-T 7174675-G-T **
21584043-C-A 19422157-C-A ***
25211934-TG-T 23065787-TG-T P2_r1 ***
13141970-C-A 10631456-C-A ***
13141975-C-A 10631461-C-A ***
13142007-A-T 10631493-A-T ***
13744002-C-T 11588326-C-T ***
28484987-G-A 26338840-G-A ***
24094360-C-T 21948213-C-T P3_b1 ***
16705469-G-A 14593589-G-A ***
22447915-C-G 20286029-C-G DYZ19 ***
19958499-A-G 17846619-A-G P5_Prx ***
22311720-G-C 20149834-G-C DYZ19 ***
10780289-G-T ***
22334823-C-A 20172937-C-A DYZ19 ******
22315840-C-G 20153954-C-G DYZ19 ***
8911723-G-T 9043682-G-T ***
9340126-G-A 9502517-G-A ***
13839846-T-C 11719140-T-C Z12006 ***
10025987-A-G 10188378-A-G ***
10025979-C-G 10188370-C-G ***
26262478-G-A 24116331-G-A P1_Y1 ***
14515791-C-A 12403992-C-A ***
5393331-G-A 5525290-G-A ***
56844176-C-T ***
7331117-C-T 7463076-C-T ***
56836418-C-A ***
6886938-C-T 7018897-C-T PR4608 ***
9859038-C-A 10021429-C-A ***
5829034-A-AAT 5960993-A-AAT ***
22232093-C-T 20070207-C-T DYZ19 ***
22737231-C-A 20575345-C-A 18×A***
18890631-AAAGGAAGG-A 16778751-AAAGGAAGG-A 6×AAGG***
13447315-TCCACTCC-T,TCCACT 11291639-TCCACTCC-T,TCCACT ***
15558499-T-TAGACAGACAGAC 13446619-T-TAGACAGACAGAC 5×AGAC***
25870563-A-T 23724416-A-T P1_Y1 ***
25785117-T-C 23638970-T-C P1_b3 ***
10023043-C-A 10185434-C-A ***
28786747-T-TCGAAC 26640600-T-TCGAAC ***
11655922-A-G ***
22869125-A-G 20707239-A-G ***
22855086-G-T 20693200-G-T ***
22809974-G-A 20648088-G-A ***
15070641-C-A 12958732-C-A ***
18263426-C-A 16151546-C-A ***
15475389-C-A 13363509-C-A ***
22480630-C-G 20318744-C-G DYZ19 ***
6915823-T-G 7047782-T-G ***
5534864-C-A 5666823-C-A ***
13992214-G-A 11871508-G-A ***
17622801-C-A 15510921-C-A ***
4412314-A-G 4544273-A-G ***
15156987-A-G 13045074-A-G ***
11025363-C-A ***
15353767-C-A 13241886-C-A ***
16056160-G-T 13944280-G-T ***
7448651-G-T 7580610-G-T IR1_L ***
8431386-C-A 8563345-C-A ***
22914674-CAAAAA-C,CAAAA 20752788-CAAAAA-C,CAAAA 27×A***
10689781-A-T ***
23808285-C-A 21646399-C-A ***
2881437-A-T 3013396-A-T ***
13196383-A-G 11040707-A-G ***
8987839-G-A 9150230-G-A ***
15816337-T-C 13704457-T-C ***
17041941-C-A 14930061-C-A ***
14826568-G-GTT 12714635-G-GTT ***
10037616-C-A 10200007-C-A ***
23801939-G-A 21640053-G-A ***
22951390-C-A 20789504-C-A ***
23435228-C-T 21273342-C-T ***
14071380-GA-G 11950674-GA-G ***
2860499-C-T 2992458-C-T ***
21202493-T-C 19040607-T-C ***
13434568-T-G 11278892-T-G ***
13460978-C-A,T 11305302-C-A,T ***
10982590-C-A ***
22988439-G-A 20826553-G-A ***
10025986-C-T 10188377-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4973301051854775931107668192
Kit: 497330945136477080317619758
Used in age calculations1051854777080317668192
Counts of SNPs1213
Variant counts last updated 2019-08-26 22:34:23.



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