Tree Position

A0-T-YP2191 > P305 > L413/PF1409/V31 > M168/PF1416 > P143 > M89/PF2746 > F1329/M3658 > F929 > IJK > K > F549 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
27339702-G-T 25193555-G-T BY2506 FGC74637 P1_g3 +
25120071-G-A 22973924-G-A BY2338 g1 +
24651465-A-G 22505318-A-G Z43713 P3_b2 +
14370576-A-T 12249872-A-T Y91225 YY+
15024809-T-G 12912897-T-G BY22044 YY+
18639900-A-G 16528020-A-G Y102280 YY+
22462706-C-A 20300820-C-A DYZ19 +
22521682-T-C 20359796-T-C Y108944 Y+
25060613-G-A 22914466-G-A BY2326 g1 +
25134571-G-A 22988424-G-A BY2345 g1 +
25150164-A-ACT 23004017-A-ACT g1 **
13433831-C-G 11278155-C-G **
21012190-ATGTGTGTGTG-A 18850304-ATGTGTGTGTG-A P4_Dst 20×TG**
22505048-T-C 20343162-T-C DYZ19 **
25916896-C-T 23770749-C-T P1_Y1 **
13526112-G-A 11370436-G-A BY29037 **
22455775-G-A 20293889-G-A DYZ19 **
28798995-G-T 26652848-G-T ***
13847977-G-T 11727271-G-T ***
22479439-C-G 20317553-C-G BY53245 DYZ19 ***
58983065-T-A 56836918-T-A ***
22479449-T-C 20317563-T-C BY53246 DYZ19 ***
13465982-G-A 11310306-G-A ***
13457922-A-G 11302246-A-G ***
13457924-T-A 11302248-T-A ***
13839034-T-C 11718328-T-C ***
13839031-GA-G 11718325-GA-G ***
10020595-G-A 10182986-G-A ***
10039872-A-G 10202263-A-G ***
10039873-G-T 10202264-G-T ***
10034855-G-A 10197246-G-A ***
22288235-G-A 20126349-G-A DYZ19 ***
13720652-T-A 11564976-T-A ***
22240119-G-T 20078233-G-T DYZ19 ***
22250184-T-A 20088298-T-A A3962 DYZ19 ***
13706529-A-G 11550853-A-G ***
9191152-C-G 9353543-C-G ***
13839059-T-A 11718353-T-A ***
22509970-C-T 20348084-C-T DYZ19 ***
13141172-CCGTTG-C 10630658-CCGTTG-C ***
58978593-T-A 56832446-T-A ***
10020564-AACC-A 10182955-AACC-A ***
22457637-A-G 20295751-A-G YFS033285 ZS3169 DYZ19 ***
28784675-G-A 26638528-G-A ***
28795061-G-T 26648914-G-T ***
58975853-C-G 56829706-C-G ***
22476690-C-T 20314804-C-T BY42056 DYZ19 ***
13513140-TCCA-T 11357464-TCCA-T ***
10018690-A-AAGGCG 10181081-A-AAGGCG ***
9982303-C-T 10144694-C-T ***
13839046-G-T 11718340-G-T ***
9936393-GAC-G 10098784-GAC-G ***
28801660-T-C 26655513-T-C ***
13857589-T-A 11736883-T-A ***
28801669-A-T 26655522-A-T ***
13135902-T-C 10625388-T-C ***
28800270-A-C 26654123-A-C ***
58985574-C-A 56839427-C-A ***
13822074-G-GA 11701368-G-GA 6×ATGGA***
13694432-G-T 11538756-G-T BY49943 ***
24347788-C-T 22201641-C-T P3_t1 ***
22477279-A-G 20315393-A-G BY25203 DYZ19 ***
58977555-C-CTTTT 56831408-C-CTTTT ***
9961666-C-T 10124057-C-T ***
28784680-G-C 26638533-G-C ***
22454912-G-T 20293026-G-T DYZ19 ***
26328264-C-G 24182117-C-G P1_Y1 ***
28800192-C-T 26654045-C-T ***
13745383-T-C 11589707-T-C ***
13810047-T-A 11689341-T-A ***
13801029-GATAGT-G,GAAAGG 11680323-GATAGT-G,GAAAGG ***
13857562-AATGGAAT-A 11736856-AATGGAAT-A ***
22284611-A-G 20122725-A-G DYZ19 ***
28800189-G-A 26654042-G-A ***
22459170-T-C 20297284-T-C BY23008 DYZ19 ***
22301330-G-T 20139444-G-T DYZ19 ***
22321704-G-C 20159818-G-C DYZ19 ***
22327027-C-T 20165141-C-T DYZ19 ***
22339277-G-C 20177391-G-C DYZ19 ***
22366554-C-G 20204668-C-G DYZ19 ***
22429568-A-G 20267682-A-G DYZ19 ***
22446777-C-T 20284891-C-T FGC50820 DYZ19 ***
22451291-C-T 20289405-C-T DYZ19 ***
22453628-T-G 20291742-T-G DYZ19 ***
22455376-T-A 20293490-T-A DYZ19 ***
22457642-T-G 20295756-T-G YFS033286 DYZ19 ***
22457643-G-A 20295757-G-A BY2021 DYZ19 ***
22471202-T-C 20309316-T-C DYZ19 ***
22283487-G-C 20121601-G-C DYZ19 ***
22476785-C-G 20314899-C-G DYZ19 ***
22510273-C-A 20348387-C-A DYZ19 ***
23663996-C-T 21502110-C-T ***
24077839-T-G 21931692-T-G P3_b1 ***
24233247-T-G 22087100-T-G P3_b1 ***
24250765-C-T 22104618-C-T P3_b1 ***
24726142-CCT-C 22579995-CCT-C P3_b2 ***
25288308-G-GA 23142161-G-GA P2_r1 ***
25347244-A-G 23201097-A-G BY25255 P2_r1 ***
25412766-G-GT 23266619-G-GT P2_r2 ***
25733450-T-C 23587303-T-C P1_b3 ***
26099825-T-C 23953678-T-C P1_Y1 ***
22284087-G-T 20122201-G-T DYZ19 ***
22279810-C-A 20117924-C-A DYZ19 ***
13472672-G-T 11316996-G-T ***
9207621-A-G 9370012-A-G ***
13450585-ACTCCG-A,ACTCCA 11294909-ACTCCG-A,ACTCCA ***
26179746-AAACAAC-A,AAAC 24033599-AAACAAC-A,AAAC P1_Y1 13×AAC***
10019582-TTTTC-T,TTTT 10181973-TTTTC-T,TTTT ***
22476511-G-A 20314625-G-A DYZ19 ***
26099803-T-C 23953656-T-C P1_Y1 9×TC***
13861502-T-A 11740796-T-A ***
22429778-A-T 20267892-A-T DYZ19 ***
22477565-C-T 20315679-C-T DYZ19 ***
28807269-T-C 26661122-T-C ***
6173222-G-A 6305181-G-A IR3_Dst ***
7488768-G-A 7620727-G-A IR1_L ***
9188703-A-C 9351094-A-C ***
9215655-G-C 9378046-G-C ***
22275211-A-T 20113325-A-T DYZ19 ***
9312661-C-A 9475052-C-A ***
13319489-C-CAGAG 11163813-C-CAGAG 8×AG***
13702412-G-C 11546736-G-C ***
14468995-AT-A,AA 12348264-AT-A,AA ***
22218181-C-A 20056295-C-A DYZ19 ***
22223814-A-T 20061928-A-T DYZ19 ***
22245258-T-A 20083372-T-A DYZ19 ***
22249437-T-A 20087551-T-A DYZ19 ***
22272215-C-T 20110329-C-T DYZ19 ***
22275190-A-G 20113304-A-G BY1927 DYZ19 ***
13857971-T-A,G 11737265-T-A,G ***
9958199-T-C 10120590-T-C ***
22266551-A-T 20104665-A-T DYZ19 ***
9983964-A-T 10146355-A-T ***
13829509-T-C 11708803-T-C ***
13833686-A-G 11712980-A-G ***
13843384-A-G 11722678-A-G ***
13858326-A-G 11737620-A-G ***
13866109-G-C,T 11745403-G-C,T ***
28800186-A-G 26654039-A-G ***
13868770-A-G,T 11748064-A-G,T ***
13859884-G-A 11739178-G-A ***
13869302-G-A 11748596-G-A ***
22242465-C-T 20080579-C-T DYZ19 ***
22276020-A-T 20114134-A-T A4013 DYZ19 ***
58975855-A-C 56829708-A-C ***
9983962-TC-T 10146353-TC-T ***
10020710-C-A 10183101-C-A ***
10008403-C-T 10170794-C-T ***
58981274-C-T 56835127-C-T ***
13851066-C-T 11730360-C-T BY91412 ***
22510424-C-A 20348538-C-A DYZ19 ***
10009149-G-A 10171540-G-A ***
10009156-AG-A 10171547-AG-A ***
9961680-G-C 10124071-G-C ***
13138130-T-C 10627616-T-C ***
13138140-T-C 10627626-T-C ***
13450452-T-A 11294776-T-A ***
13463166-G-A 11307490-G-A ***
13466970-A-T 11311294-A-T ***
13727038-C-T 11571362-C-T ***
13809928-T-G 11689222-T-G ***
13839078-G-A 11718372-G-A BY25777 ***
13138769-G-T 10628255-G-T ***
13861590-A-G 11740884-A-G ***
13851160-A-T 11730454-A-T ***
25567335-GA-G 23421188-GA-G P1_gr1 12×A***
13676723-A-G 11521047-A-G ***
13869277-G-A 11748571-G-A ***
22484013-T-C 20322127-T-C DYZ19 ***
9202501-CT-C 9364892-CT-C 12×T***
13453283-T-C 11297607-T-C ***
13488043-A-G 11332367-A-G ***
13720877-C-A 11565201-C-A ***
13802936-T-A 11682230-T-A BY54470 ***
22368952-C-T 20207066-C-T DYZ19 ***
13446669-A-C 11290993-A-C ***
13693654-G-A 11537978-G-A BY153397 ***
13868063-A-T 11747357-A-T ***
22457419-G-C 20295533-G-C BY24510 DYZ19 ***
13138000-C-T 10627486-C-T BY83517 ***
13861584-G-A 11740878-G-A ***
13718574-A-T 11562898-A-T ***
13718576-C-G 11562900-C-G BY89766 ***
13839260-A-G 11718554-A-G ***
22487767-G-C 20325881-G-C DYZ19 ***
9984567-G-A 10146958-G-A ***
13722291-A-T 11566615-A-T ***
13868068-A-G 11747362-A-G ***
10035651-T-A 10198042-T-A ***
13461817-C-T 11306141-C-T ***
58972340-A-C 56826193-A-C ***
9984536-G-C 10146927-G-C ***
13676720-A-AAACC 11521044-A-AAACC ***
13861543-A-C 11740837-A-C ***
13861578-G-C 11740872-G-C ***
13843402-T-A 11722696-T-A ***
13867426-C-T 11746720-C-T ***
13478505-T-A 11322829-T-A ***
58977557-G-A,GTTTCA 56831410-G-A,GTTTCA ***
13485856-G-A,T 11330180-G-A,T ***
22270306-G-C 20108420-G-C BY28379 DYZ19 ***
10020867-GTC-G 10183258-GTC-G ***
13679906-T-C 11524230-T-C ***
13861514-C-G 11740808-C-G ***
13857596-G-A 11736890-G-A ***
13835255-T-A 11714549-T-A ***
13861486-G-A,T 11740780-G-A,T ***
13846459-C-G 11725753-C-G ***
22476767-G-T 20314881-G-T DYZ19 ***
13706344-A-C 11550668-A-C ***
28801684-A-G 26655537-A-G ***
21430333-TA-T 19268447-TA-T 10×A***
28798856-G-A 26652709-G-A ***
22218003-C-T 20056117-C-T DYZ19 ***
13861504-G-C 11740798-G-C ***
22454938-G-C 20293052-G-C DYZ19 ***
22266508-T-G 20104622-T-G BY25039 DYZ19 ***
13866223-T-C 11745517-T-C ***
22365118-G-A 20203232-G-A DYZ19 ***
58977535-C-CCTTTCCACTT 56831388-C-CCTTTCCACTT ***
13453430-A-C 11297754-A-C ***
22284790-A-G 20122904-A-G DYZ19 ***
13866215-G-A 11745509-G-A ***
9341121-G-A 9503512-G-A ***
13846467-A-C 11725761-A-C ***
13857588-A-C 11736882-A-C ***
13466491-G-T 11310815-G-T ***
13861474-A-C,G 11740768-A-C,G ***
28796715-TG-T 26650568-TG-T ***
13828650-C-T 11707944-C-T F18244 ***
10036233-G-C 10198624-G-C ***
22281895-T-TG 20120009-T-TG DYZ19 ***
10019328-T-A 10181719-T-A ***
13461771-A-T 11306095-A-T ***
13858494-T-C 11737788-T-C ***
28800197-GCATGT-G 26654050-GCATGT-G ***
13461726-A-G 11306050-A-G ***
22508799-C-A 20346913-C-A DYZ19 ***
22509593-T-A 20347707-T-A DYZ19 ***
13861521-A-C 11740815-A-C ***
13861540-A-T 11740834-A-T ***
9961488-C-A 10123879-C-A ***
13513140-T-C 11357464-T-C ***
13488628-G-A 11332952-G-A ***
13846595-G-C 11725889-G-C ***
13481958-A-G 11326282-A-G ***
10035630-C-T 10198021-C-T ***
10035635-C-A 10198026-C-A ***
10035638-A-T 10198029-A-T ***
10035643-G-A 10198034-G-A ***
13828566-A-G 11707860-A-G ***
22260055-G-A 20098169-G-A DYZ19 ***
22276338-C-T 20114452-C-T DYZ19 ***
58975395-C-T 56829248-C-T ***
13866259-T-C 11745553-T-C ***
10035584-G-A 10197975-G-A BY83247 ***
10035601-A-G 10197992-A-G ***
10035609-G-A 10198000-G-A ***
10035610-A-G 10198001-A-G ***
13435138-C-G 11279462-C-G ***
13810173-A-C 11689467-A-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: unk-NO1059182077146497796171
Used in age calculations1059182077146497796171
Counts of SNPs43
Variant counts last updated 2018-07-08 20:33:36.

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