Crowley
FTDNA: 284952MDKA Birth:
IrelandTree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
| Position | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 284952 | Manual Edits |
|---|---|---|---|---|---|---|---|---|
| hg19:Y:7582874-C-T hg38:Y:7714833-C-T | BY66038 | Y | Y | + | ||||
| hg19:Y:7992927-C-T hg38:Y:8124886-C-T | BY69250 | Y | Y | + | ||||
| hg19:Y:14158403-T-C hg38:Y:12037697-T-C | BY93435 | Y | Y | + | ||||
| hg19:Y:15552921-G-A hg38:Y:13441041-G-A | BY102484 | Y | Y | + | ||||
| hg19:Y:15552922-C-A hg38:Y:13441042-C-A | FT180388 | Y | Y | + | ||||
| hg19:Y:16250307-C-G hg38:Y:14138427-C-G | BY106347 | Y | Y | + | ||||
| hg19:Y:17736267-T-G hg38:Y:15624387-T-G | BY116978 | Y | Y | + | ||||
| hg19:Y:21961294-G-A hg38:Y:19799408-G-A | BY136686 | Y | Y | + | ||||
| hg19:Y:13809910-G-A hg38:Y:11689204-G-A | DYZ17 | ** | ||||||
| hg19:Y:20231508-C-CAAGA hg38:Y:18069622-C-CAAGA | P5_Dst | 21×AAGA | ** | |||||
| hg19:Y:9302729-T-G hg38:Y:9465120-T-G | ** | |||||||
| hg19:Y:2852640-T-G hg38:Y:2984599-T-G | ** | |||||||
| hg19:Y:6967841-G-T hg38:Y:7099800-G-T | ** | |||||||
| hg19:Y:16351523-C-A hg38:Y:14239643-C-A | ** | |||||||
| hg19:Y:17661300-A-C hg38:Y:15549420-A-C | ** | |||||||
| hg19:Y:19117298-C-A hg38:Y:17005418-C-A | CTS9878 M4695 | ** | ||||||
| hg19:Y:28591035-C-T hg38:Y:26444888-C-T | BY150736 | ** | ||||||
| hg19:Y:13801278-G-A hg38:Y:11680572-G-A | DYZ17 | *** | ||||||
| hg19:Y:13805344-A-T hg38:Y:11684638-A-T | DYZ17 | *** | ||||||
| hg19:Y:13819917-G-A hg38:Y:11699211-G-A | DYZ17 | *** | ||||||
| hg19:Y:13869065-G-C hg38:Y:11748359-G-C | DYZ17 | *** | ||||||
| hg19:Y:13869072-A-C hg38:Y:11748366-A-C | DYZ17 | *** | ||||||
| hg19:Y:13869279-T-C hg38:Y:11748573-T-C | DYZ17 | *** | ||||||
| hg19:Y:27053578-TA-T hg38:Y:24907431-TA-T | P1_r4 | 11×A | *** | |||||
| hg19:Y:13452851-T-G hg38:Y:11297175-T-G | *** | |||||||
| hg19:Y:13664698-G-C hg38:Y:11509022-G-C | DYZ17 | *** | ||||||
| hg19:Y:27130320-GA-G hg38:Y:24984173-GA-G | P1_g3 | 14×A | *** | |||||
| hg19:Y:9937466-T-C hg38:Y:10099857-T-C | *** | |||||||
| hg19:Y:13680811-A-G hg38:Y:11525135-A-G | DYZ17 | *** | ||||||
| hg19:Y:13833440-T-C,G hg38:Y:11712734-T-C,G | DYZ17 | *** | ||||||
| hg19:Y:9961136-A-AT hg38:Y:10123527-A-AT | *** | |||||||
| hg19:Y:10017694-T-TTTCTTTTCTTTTCTTTTC hg38:Y:10180085-T-TTTCTTTTCTTTTCTTTTC | *** | |||||||
| hg19:Y:13459711-G-A hg38:Y:11304035-G-A | BY47618 | *** | ||||||
| hg19:Y:13801258-G-T hg38:Y:11680552-G-T | DYZ17 | *** | ||||||
| hg19:Y:13857995-G-T hg38:Y:11737289-G-T | DYZ17 | *** | ||||||
| hg19:Y:28784530-C-G hg38:Y:26638383-C-G | *** | |||||||
| hg19:Y:58908922-C-T hg38:Y:56681949-G-A | *** | |||||||
| hg19:Y:26189760-GT-G hg38:Y:24043613-GT-G | P1_Y1 | 21×T | *** | |||||
| hg19:Y:58975023-G-T hg38:Y:56828876-G-T | *** | |||||||
| hg19:Y:13141845-T-A hg38:Y:10631331-T-A | *** | |||||||
| hg19:Y:13841204-TGGAATGCAAG-T hg38:Y:11720498-TGGAATGCAAG-T | DYZ17 | *** | ||||||
| hg19:Y:24035359-TA-T hg38:Y:21889212-TA-T | 10×A | *** | ||||||
| hg19:Y:13833190-T-C hg38:Y:11712484-T-C | DYZ17 | *** | ||||||
| hg19:Y:9746062-CTCTA-C hg38:Y:9908453-CTCTA-C | *** | |||||||
| hg19:Y:13811149-GAATGC-G hg38:Y:11690443-GAATGC-G | DYZ17 | *** | ||||||
| hg19:Y:13704460-A-C hg38:Y:11548784-A-C | DYZ17 | *** | ||||||
| hg19:Y:13704463-G-C hg38:Y:11548787-G-C | DYZ17 | *** | ||||||
| hg19:Y:13805326-G-A hg38:Y:11684620-G-A | Z24667 | DYZ17 | *** | |||||
| hg19:Y:13805351-C-G hg38:Y:11684645-C-G | DYZ17 | *** | ||||||
| hg19:Y:13813551-T-G hg38:Y:11692845-T-G | DYZ17 | *** | ||||||
| hg19:Y:13833756-T-G hg38:Y:11713050-T-G | DYZ17 | *** | ||||||
| hg19:Y:13842137-C-G hg38:Y:11721431-C-G | DYZ17 | *** | ||||||
| hg19:Y:13842138-T-G hg38:Y:11721432-T-G | DYZ17 | *** | ||||||
| hg19:Y:28785692-GAGTAA-G hg38:Y:26639545-GAGTAA-G | *** | |||||||
| hg19:Y:58981792-C-T hg38:Y:56835645-C-T | *** | |||||||
| hg19:Y:13652247-A-G hg38:Y:11496571-A-G | DYZ17 | *** | ||||||
| hg19:Y:13664691-A-G hg38:Y:11509015-A-G | DYZ17 | *** | ||||||
| hg19:Y:9971894-C-T hg38:Y:10134285-C-T | *** | |||||||
| hg19:Y:13138113-C-T hg38:Y:10627599-C-T | *** | |||||||
| hg19:Y:13447050-A-C hg38:Y:11291374-A-C | *** | |||||||
| hg19:Y:13652198-GAGTCA-G hg38:Y:11496522-GAGTCA-G | DYZ17 | *** | ||||||
| hg19:Y:13820788-G-C hg38:Y:11700082-G-C | DYZ17 | *** | ||||||
| hg19:Y:13858510-A-AAATGGAATGGAATGG hg38:Y:11737804-A-AAATGGAATGGAATGG | DYZ17 | 15×AATGG | *** | |||||
| hg19:Y:13866295-C-A hg38:Y:11745589-C-A | DYZ17 | *** | ||||||
| hg19:Y:13868833-C-A hg38:Y:11748127-C-A | DYZ17 | *** | ||||||
| hg19:Y:22421383-T-C hg38:Y:20259497-T-C | DYZ19 | *** | ||||||
| hg19:Y:22252766-A-T hg38:Y:20090880-A-T | BY18636 | DYZ19 | *** | |||||
| hg19:Y:27256364-GA-G,GAA hg38:Y:25110217-GA-G,GAA | P1_g3 | 16×A | *** | |||||
| hg19:Y:13838542-G-C hg38:Y:11717836-G-C | DYZ17 | *** | ||||||
| hg19:Y:13805316-A-G hg38:Y:11684610-A-G | DYZ17 | *** | ||||||
| hg19:Y:27134986-GA-G hg38:Y:24988839-GA-G | P1_g3 | 11×A | *** | |||||
| hg19:Y:58980627-T-C hg38:Y:56834480-T-C | *** | |||||||
| hg19:Y:13137869-C-T hg38:Y:10627355-C-T | *** | |||||||
| hg19:Y:13459696-T-A hg38:Y:11304020-T-A | *** | |||||||
| hg19:Y:13664511-C-G hg38:Y:11508835-C-G | DYZ17 | *** | ||||||
| hg19:Y:13866290-G-T hg38:Y:11745584-G-T | DYZ17 | *** | ||||||
| hg19:Y:13866934-A-C,G hg38:Y:11746228-A-C,G | DYZ17 | *** | ||||||
| hg19:Y:13857970-C-G hg38:Y:11737264-C-G | DYZ17 | *** | ||||||
| hg19:Y:13138460-C-T hg38:Y:10627946-C-T | *** | |||||||
| hg19:Y:13139299-T-A hg38:Y:10628785-T-A | *** | |||||||
| hg19:Y:13664849-G-A hg38:Y:11509173-G-A | DYZ17 | *** | ||||||
| hg19:Y:19411908-G-A hg38:Y:17300028-G-A | *** | |||||||
| hg19:Y:27320941-AT-A hg38:Y:25174794-AT-A | P1_g3 | 11×T | *** | |||||
| hg19:Y:27336775-G-GT hg38:Y:25190628-G-GT | P1_g3 | 10×T | *** | |||||
| hg19:Y:58978901-C-T hg38:Y:56832754-C-T | *** | |||||||
| hg19:Y:13664671-A-C hg38:Y:11508995-A-C | DYZ17 | *** | ||||||
| hg19:Y:24861256-G-GT hg38:Y:22715109-G-GT | IR1_R | 11×T | *** | |||||
| hg19:Y:27016158-CTT-C hg38:Y:24870011-CTT-C | P1_r4 | 19×T | *** | |||||
| hg19:Y:13137896-T-C hg38:Y:10627382-T-C | *** | |||||||
| hg19:Y:13138153-C-T hg38:Y:10627639-C-T | *** | |||||||
| hg19:Y:13833762-A-C hg38:Y:11713056-A-C | DYZ17 | *** | ||||||
| hg19:Y:59004609-A-G hg38:Y:56858462-A-G | *** | |||||||
| hg19:Y:18378987-TG-T hg38:Y:16267107-TG-T | P6_Prx | *** | ||||||
| hg19:Y:10020843-C-G hg38:Y:10183234-C-G | *** | |||||||
| hg19:Y:13139304-CAGTTG-C hg38:Y:10628790-CAGTTG-C | *** | |||||||
| hg19:Y:13459208-TTCCAACTGAC-T hg38:Y:11303532-TTCCAACTGAC-T | *** | |||||||
| hg19:Y:13843650-T-G hg38:Y:11722944-T-G | DYZ17 | *** | ||||||
| hg19:Y:13459639-CTATCT-C hg38:Y:11303963-CTATCT-C | *** | |||||||
| hg19:Y:13801239-G-T hg38:Y:11680533-G-T | DYZ17 | *** | ||||||
| hg19:Y:13841220-G-C hg38:Y:11720514-G-C | DYZ17 | *** | ||||||
| hg19:Y:10020965-C-G hg38:Y:10183356-C-G | *** | |||||||
| hg19:Y:13139315-C-T hg38:Y:10628801-C-T | *** | |||||||
| hg19:Y:58855282-C-T hg38:Y:56735589-G-A | *** | |||||||
| hg19:Y:13803218-G-A hg38:Y:11682512-G-A | DYZ17 | *** | ||||||
| hg19:Y:13676201-G-C hg38:Y:11520525-G-C | DYZ17 | *** | ||||||
| hg19:Y:13833807-G-C hg38:Y:11713101-G-C | DYZ17 | *** | ||||||
| hg19:Y:13833909-T-G hg38:Y:11713203-T-G | DYZ17 | *** | ||||||
| hg19:Y:13845622-T-A hg38:Y:11724916-T-A | DYZ17 | *** | ||||||
| hg19:Y:13866293-T-A hg38:Y:11745587-T-A | DYZ17 | *** | ||||||
| hg19:Y:13866294-G-C hg38:Y:11745588-G-C | DYZ17 | *** | ||||||
| hg19:Y:10020883-G-C hg38:Y:10183274-G-C | *** | |||||||
| hg19:Y:13447269-C-T hg38:Y:11291593-C-T | *** | |||||||
| hg19:Y:21023249-GT-G hg38:Y:18861363-GT-G | P4_Dst | 14×T | *** | |||||
| hg19:Y:22485497-T-C hg38:Y:20323611-T-C | ZS6001 | DYZ19 | *** | |||||
| hg19:Y:13664519-A-G hg38:Y:11508843-A-G | DYZ17 | *** | ||||||
| hg19:Y:25628466-G-T hg38:Y:23482319-G-T | P1_b3 | *** | ||||||
| hg19:Y:13818827-C-G hg38:Y:11698121-C-G | DYZ17 | *** | ||||||
| hg19:Y:13545324-G-A hg38:Y:11389648-G-A | *** | |||||||
| hg19:Y:13459645-C-A hg38:Y:11303969-C-A | *** | |||||||
| hg19:Y:13459677-T-C hg38:Y:11304001-T-C | *** | |||||||
| hg19:Y:13459685-C-G hg38:Y:11304009-C-G | *** | |||||||
| hg19:Y:13681115-A-G hg38:Y:11525439-A-G | DYZ17 | *** | ||||||
| hg19:Y:13851535-TGGAAA-T hg38:Y:11730829-TGGAAA-T | DYZ17 | *** | ||||||
| hg19:Y:13664686-A-C hg38:Y:11509010-A-C | DYZ17 | *** | ||||||
| hg19:Y:13684846-A-G hg38:Y:11529170-A-G | DYZ17 | *** | ||||||
| hg19:Y:8218026-T-C hg38:Y:8349985-T-C | *** | |||||||
| hg19:Y:8218103-C-T hg38:Y:8350062-C-T | *** | |||||||
| hg19:Y:8218112-C-T hg38:Y:8350071-C-T | *** | |||||||
| hg19:Y:13809796-G-A,C hg38:Y:11689090-G-A,C | DYZ17 | *** | ||||||
| hg19:Y:13866280-G-A hg38:Y:11745574-G-A | DYZ17 | *** | ||||||
| hg19:Y:13845626-G-A hg38:Y:11724920-G-A | DYZ17 | *** | ||||||
| hg19:Y:20914498-CA-C hg38:Y:18752612-CA-C | P4_Dst | 12×A | *** | |||||
| hg19:Y:13137899-G-C hg38:Y:10627385-G-C | *** | |||||||
| hg19:Y:13138139-C-T hg38:Y:10627625-C-T | *** | |||||||
| hg19:Y:13866279-G-C hg38:Y:11745573-G-C | DYZ17 | *** | ||||||
| hg19:Y:19948181-C-CCTTTCTTTCTTTCTTTCTTT,T hg38:Y:17836301-C-CCTTTCTTTCTTTCTTTCTTT,T | P5_Prx | 21×CTTT | *** | |||||
| hg19:Y:13821163-A-C,G hg38:Y:11700457-A-C,G | DYZ17 | *** | ||||||
| hg19:Y:13815427-G-A hg38:Y:11694721-G-A | DYZ17 | *** | ||||||
| hg19:Y:10031671-C-T hg38:Y:10194062-C-T | *** | |||||||
| hg19:Y:25652602-CT-C hg38:Y:23506455-CT-C | P1_b3 | 11×T | *** | |||||
| hg19:Y:13643367-T-C hg38:Y:11487691-T-C | *** | |||||||
| hg19:Y:13643369-C-T hg38:Y:11487693-C-T | *** | |||||||
| hg19:Y:13864414-G-T hg38:Y:11743708-G-T | DYZ17 | *** | ||||||
| hg19:Y:13833816-G-T hg38:Y:11713110-G-T | DYZ17 | *** | ||||||
| hg19:Y:8218013-T-A hg38:Y:8349972-T-A | 15×TTTC | *** | ||||||
| hg19:Y:8218014-T-A hg38:Y:8349973-T-A | *** | |||||||
| hg19:Y:8218027-T-C hg38:Y:8349986-T-C | *** | |||||||
| hg19:Y:8218034-T-C hg38:Y:8349993-T-C | *** | |||||||
| hg19:Y:8218079-C-T hg38:Y:8350038-C-T | *** | |||||||
| hg19:Y:8218093-T-C hg38:Y:8350052-T-C | *** | |||||||
| hg19:Y:8218109-T-C hg38:Y:8350068-T-C | *** | |||||||
| hg19:Y:8218119-C-T hg38:Y:8350078-C-T | *** | |||||||
| hg19:Y:8218120-C-T hg38:Y:8350079-C-T | 15×TTCT | *** | ||||||
| hg19:Y:8218131-C-T hg38:Y:8350090-C-T | *** | |||||||
| hg19:Y:9182942-T-G hg38:Y:9345333-T-G | FTB17005 | *** | ||||||
| hg19:Y:9760575-C-T hg38:Y:9922966-C-T | F207 | *** | ||||||
| hg19:Y:9944034-T-A hg38:Y:10106425-T-A | *** | |||||||
| hg19:Y:9981407-G-T hg38:Y:10143798-G-T | *** | |||||||
| hg19:Y:10020964-A-ACTCTCTCTCTCT hg38:Y:10183355-A-ACTCTCTCTCTCT | *** | |||||||
| hg19:Y:10023450-A-C hg38:Y:10185841-A-C | *** | |||||||
| hg19:Y:10025953-G-A hg38:Y:10188344-G-A | *** | |||||||
| hg19:Y:10025967-A-C hg38:Y:10188358-A-C | *** | |||||||
| hg19:Y:13137889-C-T hg38:Y:10627375-C-T | *** | |||||||
| hg19:Y:13138161-C-A hg38:Y:10627647-C-A | *** | |||||||
| hg19:Y:13143885-C-A hg38:Y:10633371-C-A | *** | |||||||
| hg19:Y:13446630-C-A hg38:Y:11290954-C-A | *** | |||||||
| hg19:Y:13457896-CGGTTT-C hg38:Y:11302220-CGGTTT-C | *** | |||||||
| hg19:Y:13459650-C-T hg38:Y:11303974-C-T | *** | |||||||
| hg19:Y:13459659-C-A hg38:Y:11303983-C-A | *** | |||||||
| hg19:Y:13459664-C-A hg38:Y:11303988-C-A | *** | |||||||
| hg19:Y:13459679-C-T hg38:Y:11304003-C-T | FT443904 | *** | ||||||
| hg19:Y:13459684-C-T hg38:Y:11304008-C-T | *** | |||||||
| hg19:Y:13459690-C-A hg38:Y:11304014-C-A | *** | |||||||
| hg19:Y:13459714-C-G hg38:Y:11304038-C-G | *** | |||||||
| hg19:Y:13643382-TCGA-T hg38:Y:11487706-TCGA-T | *** | |||||||
| hg19:Y:13676620-G-C hg38:Y:11520944-G-C | DYZ17 | *** | ||||||
| hg19:Y:13804711-A-C hg38:Y:11684005-A-C | DYZ17 | *** | ||||||
| hg19:Y:13805345-T-A hg38:Y:11684639-T-A | DYZ17 | *** | ||||||
| hg19:Y:13805356-G-C hg38:Y:11684650-G-C | DYZ17 | *** | ||||||
| hg19:Y:13805360-T-C hg38:Y:11684654-T-C | DYZ17 | *** | ||||||
| hg19:Y:13810004-C-T hg38:Y:11689298-C-T | DYZ17 | *** | ||||||
| hg19:Y:13810243-C-G hg38:Y:11689537-C-G | DYZ17 | *** | ||||||
| hg19:Y:13821137-T-A hg38:Y:11700431-T-A | DYZ17 | *** | ||||||
| hg19:Y:13830205-A-G hg38:Y:11709499-A-G | DYZ17 | *** | ||||||
| hg19:Y:13830244-C-G hg38:Y:11709538-C-G | DYZ17 | *** | ||||||
| hg19:Y:13833782-G-C hg38:Y:11713076-G-C | DYZ17 | *** | ||||||
| hg19:Y:13833827-G-C hg38:Y:11713121-G-C | DYZ17 | *** | ||||||
| hg19:Y:13842167-C-G hg38:Y:11721461-C-G | DYZ17 | *** | ||||||
| hg19:Y:13851526-T-C hg38:Y:11730820-T-C | DYZ17 | *** | ||||||
| hg19:Y:13858020-G-T hg38:Y:11737314-G-T | DYZ17 | *** | ||||||
| hg19:Y:13858073-A-T hg38:Y:11737367-A-T | DYZ17 | *** | ||||||
| hg19:Y:13858118-A-G hg38:Y:11737412-A-G | DYZ17 | *** | ||||||
| hg19:Y:13862256-G-T hg38:Y:11741550-G-T | DYZ17 | *** | ||||||
| hg19:Y:16119781-T-C hg38:Y:14007901-T-C | P8_Prx | *** | ||||||
| hg19:Y:16157720-G-A hg38:Y:14045840-G-A | P8_Dst | *** | ||||||
| hg19:Y:18892301-TTTTA-T hg38:Y:16780421-TTTTA-T | *** | |||||||
| hg19:Y:18892321-T-C hg38:Y:16780441-T-C | *** | |||||||
| hg19:Y:18892323-A-G hg38:Y:16780443-A-G | *** | |||||||
| hg19:Y:22231076-A-C hg38:Y:20069190-A-C | DYZ19 | *** | ||||||
| hg19:Y:22282751-G-A hg38:Y:20120865-G-A | DYZ19 | *** | ||||||
| hg19:Y:22421369-A-T hg38:Y:20259483-A-T | DYZ19 | *** | ||||||
| hg19:Y:22437901-G-T hg38:Y:20276015-G-T | BY42007 | DYZ19 | *** | |||||
| hg19:Y:28068166-GGA-G hg38:Y:25922019-GGA-G | P1_Y2 | *** | ||||||
| hg19:Y:58826797-C-T hg38:Y:56764074-G-A | *** | |||||||
| hg19:Y:58978892-A-G hg38:Y:56832745-A-G | *** | |||||||
| hg19:Y:59004628-G-T hg38:Y:56858481-G-T | *** | |||||||
| hg19:Y:59004629-A-C hg38:Y:56858482-A-C | *** | |||||||
| hg19:Y:13446635-T-A,C hg38:Y:11290959-T-A,C | *** | |||||||
| hg19:Y:13833841-CGAAAG-C hg38:Y:11713135-CGAAAG-C | DYZ17 | *** | ||||||
| hg19:Y:13868516-C-A,G hg38:Y:11747810-C-A,G | DYZ17 | *** | ||||||
| hg19:Y:13476830-A-C,G hg38:Y:11321154-A-C,G | *** | |||||||
| hg19:Y:27056889-ATT-A,AT hg38:Y:24910742-ATT-A,AT | P1_r4 | 19×T | *** | |||||
| hg19:Y:58981073-T-A,G hg38:Y:56834926-T-A,G | *** | |||||||
| hg19:Y:13810163-GGCCTC-G,GGCATC hg38:Y:11689457-GGCCTC-G,GGCATC | DYZ17 | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Mutation Notes:
| Kit | POSITION-REF-ALT (hg19) | POSITION-REF-ALT (hg38) | Note |
|---|---|---|---|
| Manual | 15939293-C-T | 13827413-C-T | 2T |
| Manual | 16175154-C-T | 14063274-C-T | 12T |
Haplotype Progression
The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.
DYS393 | DYS390 | DYS19 | DYS391 | DYS385 | DYS426 | DYS388 | DYS439 | DYS389i | DYS392 | DYS389ii | DYS458 | DYS459 | DYS455 | DYS454 | DYS447 | DYS437 | DYS448 | DYS449 | DYS464 | DYS460 | Y-GATA-H4 | YCAII | DYS456 | DYS607 | DYS576 | DYS570 | CDY | DYS442 | DYS438 | DYS531 | DYS578 | DYF395S1 | DYS590 | DYS537 | DYS641 | DYS472 | DYF406S1 | DYS511 | DYS425 | DYS413 | DYS557 | DYS594 | DYS436 | DYS490 | DYS534 | DYS450 | DYS444 | DYS481 | DYS520 | DYS446 | DYS617 | DYS568 | DYS487 | DYS572 | DYS640 | DYS492 | DYS565 | DYS710 | DYS485 | DYS632 | DYS495 | DYS540 | DYS714 | DYS716 | DYS717 | DYS505 | DYS556 | DYS549 | DYS589 | DYS522 | DYS494 | DYS533 | DYS636 | DYS575 | DYS638 | DYS462 | DYS452 | DYS445 | Y-GATA-A10 | DYS463 | DYS441 | Y-GGAAT-1B07 | DYS525 | DYS712 | DYS593 | DYS650 | DYS532 | DYS715 | DYS504 | DYS513 | DYS561 | DYS552 | DYS726 | DYS635 | DYS587 | DYS643 | DYS497 | DYS510 | DYS434 | DYS461 | DYS435 | FTY371 | FTY303 | FTY10 | FTY284 | FTY219 | FTY324 | FTY327 | FTY394 | DYS538 | FTY220 | FTY254 | FTY19 | FTY4 | DYS577 | FTY24 | FTY346 | FTY160 | FTY62 | FTY400 | FTY114 | FTY246 | FTY26 | FTY368 | FTY173 | FTY209 | FTY337 | FTY81 | FTY387 | FTY361 | FTY330 | FTY65 | FTY168 | FTY171 | FTY136 | FTY53 | FTY40 | FTY386 | FTY100 | FTY152 | FTY55 | FTY297 | FTY370 | FTY103 | FTY64 | FTY174 | FTY313 | FTY362 | FTY342 | FTY161 | FTY374 | FTY316 | FTY101 | FTY204 | DYS477 | FTY192 | DYS502 | FTY341 | DYS493 | FTY1 | FTY227 | DYS499 | FTY391 | FTY353 | FTY332 | FTY163 | DYS483 | FTY172 | FTY180 | DYS581 | FTY179 | FTY188 | FTY369 | FTY70 | FTY63 | DYS508 | FTY347 | FTY83 | FTY277 | FTY276 | FTY195 | FTY109 | FTY356 | FTY215 | FTY105 | FTY123 | FTY242 | FTY214 | FTY132 | FTY262 | FTY333 | FTY208 | DYF398B | FTY43 | FTY166 | FTY13 | FTY11 | DYS584 | DYS608 | FTY95 | FTY151 | FTY388 | FTY256 | DYS580 | FTY234 | FTY268 | FTY139 | FTY27 | FTY75 | DYS512 | FTY329 | FTY320 | FTY7 | FTY247 | FTY211 | DYS474 | FTY39 | FTY376 | FTY37 | FTY373 | DYS475 | FTY138 | FTY288 | FTY264 | FTY93 | FTY380 | FTY18 | FTY115 | DYS569 | FTY390 | FTY46 | FTY243 | FTY322 | FTY281 | FTY153 | FTY181 | FTY184 | FTY359 | FTY121 | FTY74 | FTY279 | DYS530 | FTY45 | DYS573 | DYS542 | FTY36 | FTY304 | FTY203 | FTY291 | FTY142 | FTY191 | FTY183 | FTY141 | FTY299 | FTY193 | FTY124 | FTY16 | FTY236 | FTY185 | FTY378 | FTY225 | FTY397 | FTY3 | FTY67 | FTY182 | FTY334 | DYS623 | FTY348 | FTY357 | FTY275 | FTY306 | FTY383 | FTY253 | FTY285 | DYS645 | FTY17 | FTY85 | DYS598 | FTY375 | FTY325 | FTY12 | FTY365 | FTY35 | FTY237 | FTY238 | FTY305 | FTY56 | FTY129 | FTY352 | FTY292 | FTY154 | DYS539 | FTY301 | FTY366 | FTY231 | DYS618 | FTY216 | FTY82 | FTY393 | FTY155 | FTY68 | FTY32 | FTY265 | FTY300 | FTY143 | FTY201 | FTY199 | FTY86 | FTY98 | FTY144 | DYS541 | DYS507 | FTY20 | FTY116 | FTY308 | FTY177 | FTY89 | FTY158 | FTY22 | FTY84 | FTY186 | FTY396 | FTY91 | FTY29 | FTY78 | FTY229 | FTY260 | FTY250 | FTY364 | DYS476 | FTY221 | FTY57 | FTY377 | FTY384 | DYS466 | FTY363 | FTY137 | FTY69 | FTY72 | FTY251 | FTY2 | FTY217 | FTY257 | FTY120 | FTY25 | FTY252 | FTY33 | FTY42 | FTY54 | FTY372 | DYS480 | FTY176 | FTY76 | FTY66 | FTY197 | FTY385 | FTY270 | FTY298 | FTY198 | FTY117 | DYS544 | FTY159 | FTY232 | FTY156 | FTY343 | FTY296 | FTY311 | FTY344 | FTY178 | FTY367 | FTY73 | FTY112 | FTY295 | DYS616 | FTY338 | FTY196 | FTY157 | FTY162 | DYS551 | FTY148 | FTY94 | FTY52 | FTY131 | FTY9 | FTY194 | FTY8 | FTY318 | FTY317 | FTY99 | FTY289 | FTY169 | FTY51 | FTY345 | FTY398 | FTY111 | FTY273 | FTY382 | FTY47 | FTY30 | FTY147 | DYS615 | FTY302 | FTY354 | FTY326 | FTY88 | FTY248 | FTY267 | FTY170 | FTY60 | DYS453 | FTY249 | FTY167 | DYS624 | FTY134 | FTY235 | FTY145 | FTY14 | FTY80 | FTY50 | DYS514 | FTY340 | DYS585 | DYS516 | FTY293 | FTY207 | FTY278 | FTY210 | DYS523 | FTY269 | FTY530 | FTY1156 | FTY1070 | FTY906 | FTY1004 | FTY331 | FTY31 | FTY226 | FTY335 | DYS583 | FTY339 | FTY113 | FTY280 | FTY255 | FTY59 | DYS620 | FTY349 | FTY130 | FTY119 | DYF398A | FTY58 | FTY127 | FTY321 | FTY92 | FTY392 | DYF392 | FTY290 | FTY312 | FTY135 | FTY150 | FTY294 | FTY244 | FTY48 | FTY282 | DYS489 | FTY272 | FTY239 | FTY258 | FTY49 | DYS574 | FTY41 | FTY905 | FTY1103 | FTY502 | FTY743 | FTY443 | FTY670 | FTY883 | DYS631 | FTY1042 | FTY510 | DYS389B | FTY512 | FTY837 | DYS642 | FTY407 | FTY935 | FTY563 | FTY1016 | FTY1091 | FTY1049 | FTY1155 | DYS602 | FTY587 | FTY635 | FTY904 | DYS543 | FTY1148 | FTY861 | FTY742 | FTY433 | FTY1039 | FTY71 | FTY259 | FTY108 | FTY336 | FTY44 | FTY233 | FTY274 | FTY34 | FTY942 | FTY1068 | FTY945 | FTY1051 | FTY658 | FTY625 | FTY800 | FTY818 | FTY971 | FTY509 | FTY1025 | FTY835 | FTY984 | DYS637 | FTY832 | FTY689 | FTY998 | FTY520 | FTY445 | FTY809 | FTY428 | FTY562 | FTY897 | FTY1064 | FTY1088 | FTY1052 | DYF405 | FTY310 | FTY189 | DYS488 | FTY283 | FTY28 | FTY578 | DYS484 | FTY858 | FTY596 | FTY915 | FTY446 | FTY452 | FTY1006 | FTY612 | FTY507 | FTY614 | FTY824 | FTY1055 | FTY690 | FTY2318 | FTY981 | FTY946 | FTY1040 | DYS718 | FTY15 | FTY2025 | DYS685u1 | DYS596u5 | FTY1511 | FTY769 | FTY923 | FTY1167 | FTY415 | FTY505 | FTY241 | FTY2263 | FTY517 | FTY2180 | FTY775 | DYS567 | FTY444 | FTY691 | FTY1120 | FTY223 | DYF393u3 | FTY1850 | FTY645 | FTY696 | FTY1166 | FTY991 | FTY912 | DYS551u4 | FTY447 | DYS518u3 | FTY875 | DYS536u1 | FTY585 | FTY896 | FTY731 | FTY401 | FTY2011 | FTY665 | FTY814 | FTY2050 | DYS626u3 | FTY750 | FTY471 | FTY985 | FTY589 | FTY420 | FTY921 | FTY457 | FTY657 | FTY1110 | FTY485 | FTY315 | FTY1852 | FTY1107 | FTY489 | FTY522 | FTY654 | FTY110 | FTY881 | DYS470 | FTY534 | FTY1101 | FTY1933 | FTY936 | FTY772 | FTY1047 | FTY2351 | FTY680 | FTY2254 | FTY1030 | FTY2083 | FTY287 | FTY797 | FTY2366 | FTY951 | FTY774 | FTY1116 | DYS621 | FTY885 | FTY1012 | DYF394u1 | FTY888 | FTY648 | FTY725 | FTY643 | FTY927 | FTY1022 | DYS559 | FTY933 | FTY633 | FTY900 | FTY1848 | FTY478 | FTY533 | FTY467 | FTY1900 | FTY421 | DYS612u5 | DYS595 | FTY668 | FTY1028 | DYS579 | FTY646 | FTY1026 | FTY801 | FTY432 | FTY2301 | FTY466 | FTY531 | FTY1083 | FTY997 | FTY1114 | FTY830 | FTY655 | FTY910 | FTY1143 | FTY572 | DYS506 | DYS558u2 | FTY1127 | FTY712 | FTY634 | FTY499 | FTY1094 | FTY724 | FTY535 | FTY552 | FTY430 | FTY588 | DYS609 | FTY961 | FTY813 | FTY656 | FTY839 | FTY882 | FTY789 | FTY459 | FTY1037 | FTY435 | FTY1157 | FTY1546 | FTY2242 | FTY720 | DYS614u10 | FTY887 | FTY473 | FTY816 | FTY1060 | FTY472 | FTY943 | FTY1482 | FTY565 | DYS629 | FTY891 | FTY438 | DYS582 | FTY468 | FTY649 | FTY606 | FTY792 | FTY1087 | FTY895 | DYS614u3 | FTY574 | FTY1556 | FTY560 | FTY694 | FTY1097 | DYS518u6 | FTY876 | FTY2443 | FTY990 | FTY934 | FTY465 | FTY1046 | FTY1312 | FTY751 | FTY1915 | FTY678 | FTY419 | FTY958 | FTY456 | DYS592u1 | FTY1172 | FTY416 | FTY650 | FTY808 | FTY1542 | DYS721u1 | FTY746 | FTY2233 | FTY892 | FTY845 | FTY1034 | FTY498 | DYF382u1 | FTY637 | DYS588 | FTY947 | DYS543u3 | FTY644 | DYS703 | DYS649 | FTY212 | FTY781 | FTY1106 | FTY592 | FTY848 | FTY940 | FTY903 | FTY1081 | FTY952 | DYS706u2 | FTY1084 | FTY700 | FTY482 | DYS625u7 | FTY960 | FTY586 | FTY1330 | FTY1119 | FTY1762 | FTY1010 | FTY417 | FTY716 | DYS627u3 | FTY1942 | FTY1067 | FTY841 | FTY1031 | FTY1082 | FTY1023 | FTY475 | FTY222 | FTY962 | FTY423 | FTY664 | DYS517u1 | FTY1076 | FTY1557 | FTY1154 | DYS681 | FTY1002 | DYS706u1 | FTY1174 | FTY986 | FTY651 | FTY886 | FTY1078 | DYS546u4 | FTY1092 | FTY2471 | FTY1111 | FTY461 | FTY323 | FTY1013 | FTY506 | FTY550 | FTY767 | FTY721 | DYS548 | FTY559 | DYS705 | FTY640 | FTY613 | FTY402 | FTY2426 | FTY755 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P312/S116 | 13 | 24 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 25 | 15 | 19 | 29 | 15-15-17-17 | 11 | 11 | 19-23 | 16 | 15 | 18 | 17 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 33 | 15 | 9 | 16 | 12 | 26 | 26 | 19 | 12 | 11 | 13 | 12 | 10 | 9 | 12 | 12 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 13 | 10 | 10 | 20 | 15 | 19 | 13 | 24 | 17 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| L21/S145 | 13 | 24 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 25 | 15 | 19 | 29 | 15-15-17-17 | 11 | 11 | 19-23 | 16 | 15 | 18 | 17 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 35 | 15 | 9 | 16 | 12 | 25 | 26 | 19 | 12 | 11 | 13 | 12 | 11 | 9 | 12 | 12 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 13 | 10 | 10 | 20 | 15 | 19 | 13 | 24 | 17 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Crowley | 13 | 24 | 14 | 10 | 11-11 | 12 | 12 | 11 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 24 | 15 | 19 | 29 | 15-15-17-18 | 11 | 11 | 19-23 | 15 | 15 | 18 | 16 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 11 | 35 | 15 | 9 | 16 | 12 | 26 | 26 | 19 | 12 | 11 | 12 | 12 | 11 | 9 | 12 | 11 | 10 | 11 | 11 | 29 | 12 | 13 | 24 | 13 | 10 | 10 | 21 | 15 | 19 | 14 | 25 | 16 | 12 | 15 | 24 | 12 | 24 | 18 | 10 | 14 | 18 | 9 | 12 | 11 |
Age Analysis Information (work in progress)
| All | McDonald | YFull | |
| Kit: 284952 | 10365555 | 7447399 | 7513131 |
| Used in age calculations | 10365555 | 7447399 | 7513131 |
| Counts of SNPs | 8 | 8 |
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