Thomas
FTDNA: B75374, BigY2: B75374Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA B75374 | BigY2 B75374 |
---|---|---|---|---|---|---|---|---|---|
18312591-C-T | 16200711-C-T | P6_Prx | *** | A* | |||||
8203299-C-G | 8335258-C-G | Y86088 | Y | Y | + | + | |||
9143088-G-T | 9305479-G-T | Y88711 | Y | + | + | ||||
13464678-T-A | 11309002-T-A | BY85694 | *** | + | |||||
13464680-T-A | 11309004-T-A | BY85695 | *** | + | |||||
14102794-G-A | 11982088-G-A | Y90326 | Y | Y | 11×TCTA | + | + | ||
15074042-T-G | 12962132-T-G | Y92975 | Y | Y | + | + | |||
15347859-C-A | 13235978-C-A | Y93592 | Y | Y | + | + | |||
17903963-C-T | 15792083-C-T | Z18933 | Y | Y | + | + | |||
18665001-G-A | 16553121-G-A | Y102364 | Y | Y | + | + | |||
18983728-T-C | 16871848-T-C | Y103251 | Y | Y | + | + | |||
22462795-G-A | 20300909-G-A | BY21324 | DYZ19 | + | + | ||||
22928421-G-A | 20766535-G-A | Y110154 | Y | Y | + | + | |||
23002333-T-C | 20840447-T-C | BY142268 | Y | Y | + | + | |||
23892136-C-A | 21730250-C-A | Y112471 | Y | + | |||||
23992567-G-A | 21846420-G-A | Y112604 | + | + | |||||
19070489-C-A | 16958609-C-A | Y | Y | *** | * | ||||
22238233-G-C | 20076347-G-C | DYZ19 | *** | * | |||||
7717685-TTTCC-T | 7849644-TTTCC-T | 13×TTCC | ** | ||||||
24264574-T-C | 22118427-T-C | P3_b1 | ** | ||||||
17675539-AAG-A | 15563659-AAG-A | ** | |||||||
59019179-C-T | 56873032-C-T | ** | |||||||
27274935-G-A | 25128788-G-A | P1_g3 | ** | ||||||
5393507-C-A | 5525466-C-A | ** | |||||||
7084556-C-A | 7216515-C-A | ** | |||||||
5073702-A-AATAT | 5205661-A-AATAT | 10×AT | ** | ||||||
16506246-C-A | 14394366-C-A | ** | |||||||
9426725-C-A | 9589116-C-A | ** | |||||||
20360958-T-TA | 18199072-T-TA | P5_Dst | ** | ||||||
17960988-A-T | 15849108-A-T | ** | |||||||
28771461-C-A | 26625314-C-A | ** | |||||||
17707376-CAAAAAAAAAA-C | 15595496-CAAAAAAAAAA-C | 23×A | ** | ||||||
17874283-C-A | 15762403-C-A | ** | |||||||
19476770-C-A | 17364890-C-A | ** | |||||||
15743579-C-A | 13631699-C-A | ** | |||||||
9839529-G-A | 10001920-G-A | ** | |||||||
28480914-C-A | 26334767-C-A | ** | |||||||
13487732-C-G | 11332056-C-G | ** | |||||||
13487736-C-A | 11332060-C-A | ** | |||||||
13480498-T-G | 11324822-T-G | ** | |||||||
14926444-C-A | 12814509-C-A | ** | |||||||
16700107-C-A | 14588227-C-A | ** | |||||||
18614388-C-A | 16502508-C-A | ** | |||||||
16274335-C-A | 14162455-C-A | ** | |||||||
9772052-C-A | 9934443-C-A | ** | |||||||
10661713-C-A | ** | ||||||||
10900081-C-A | ** | ||||||||
16018236-C-A | 13906356-C-A | ** | |||||||
14743889-C-A | 12631958-C-A | ** | |||||||
14779595-C-T | 12667665-C-T | ** | |||||||
14779604-T-C | 12667674-T-C | ** | |||||||
18109354-C-A | 15997474-C-A | ** | |||||||
4080839-C-A | 4212798-C-A | ** | |||||||
7938161-G-GAA | 8070120-G-GAA | 15×A | ** | ||||||
19412557-C-A | 17300677-C-A | ** | |||||||
17663118-CAAA-C | 15551238-CAAA-C | 26×A | ** | ||||||
10973980-T-C | ** | ||||||||
21880980-C-T | 19719094-C-T | ** | |||||||
14479530-C-A | 12358799-C-A | ** | |||||||
5818429-C-A | 5950388-C-A | ** | |||||||
10920978-G-T | ** | ||||||||
24112763-C-A | 21966616-C-A | P3_b1 | ** | ||||||
10677361-C-CACTAA | ** | ||||||||
10942709-T-A | ** | ||||||||
24836734-G-GGGAA | 22690587-G-GGGAA | P3_b2 | 15×GGAA | ** | |||||
21175748-TC-T | 19013862-TC-T | ** | |||||||
21880988-G-A | 19719102-G-A | ** | |||||||
7663562-C-A | 7795521-C-A | ** | |||||||
13958505-T-A | 11837799-T-A | ** | |||||||
21442860-C-A | 19280974-C-A | ** | |||||||
7935834-T-G | 8067793-T-G | ** | |||||||
15201672-C-A | 13089758-C-A | ** | |||||||
15315427-A-G | 13203532-A-G | ** | |||||||
4208416-C-A | 4340375-C-A | ** | |||||||
9732892-T-A | 9895283-T-A | IR3_Prx | ** | ||||||
8321465-G-T | 8453424-G-T | 5×TTTA | ** | ||||||
18127636-C-A | 16015756-C-A | ** | |||||||
22914593-C-A | 20752707-C-A | ** | |||||||
6775213-C-A | 6907172-C-A | ** | |||||||
16297382-G-T | 14185502-G-T | ** | |||||||
7295803-C-A | 7427762-C-A | ** | |||||||
14779589-T-C | 12667659-T-C | ** | |||||||
18145706-C-A | 16033826-C-A | ** | |||||||
9941588-C-A | 10103979-C-A | ** | |||||||
28537698-C-A | 26391551-C-A | ** | |||||||
13963810-C-A | 11843104-C-A | ** | |||||||
15542235-C-A | 13430355-C-A | ** | |||||||
28724380-T-G | 26578233-T-G | ** | |||||||
15733877-C-T | 13621997-C-T | ** | |||||||
17425079-C-A | 15313199-C-A | ** | |||||||
10799582-C-A | ** | ||||||||
10661715-A-T | ** | ||||||||
10661716-TGC-T | ** | ||||||||
10661726-T-C | ** | ||||||||
10661735-ACTTGAC-A | ** | ||||||||
14845302-G-T | 12733368-G-T | ** | |||||||
13486922-T-C | 11331246-T-C | ** | |||||||
16765005-C-A | 14653125-C-A | ** | |||||||
21132767-C-A | 18970881-C-A | ** | |||||||
15106531-C-A | 12994619-C-A | ** | |||||||
2873873-C-A | 3005832-C-A | ** | |||||||
15161291-T-A | 13049377-T-A | ** | |||||||
10880995-C-T | FT435320 | ** | |||||||
10881000-C-T | ** | ||||||||
10881010-T-C | ** | ||||||||
10881013-C-T | ** | ||||||||
56707167-T-G | ** | ||||||||
6231161-C-A | 6363120-C-A | IR3_Dst | ** | ||||||
10672205-A-C | ** | ||||||||
10672214-C-T | ** | ||||||||
10672218-C-A | ** | ||||||||
18192045-G-T | 16080165-G-T | ** | |||||||
7195293-G-A | 7327252-G-A | ** | |||||||
2668923-C-A | 2800882-C-A | ** | |||||||
2691729-C-A | 2823688-C-A | ** | |||||||
2746103-C-T | 2878062-C-T | Y81353 | ** | ||||||
2767878-A-G | 2899837-A-G | ** | |||||||
2790140-C-A | 2922099-C-A | ** | |||||||
2794930-C-A | 2926889-C-A | ** | |||||||
2833331-C-A | 2965290-C-A | ** | |||||||
2854937-C-A | 2986896-C-A | ** | |||||||
2856445-T-A | 2988404-T-A | ** | |||||||
2921892-A-T | 3053851-A-T | ** | |||||||
2948456-T-C | 3080415-T-C | ** | |||||||
2980397-T-A | 3112356-T-A | ** | |||||||
3028799-A-T | 3160758-A-T | ** | |||||||
3061136-C-A | 3193095-C-A | ** | |||||||
3235750-T-A | 3367709-T-A | ** | |||||||
3344460-C-T | 3476419-C-T | ** | |||||||
3467253-CTCAAACCCTTG-C | 3599212-CTCAAACCCTTG-C | ** | |||||||
3627753-A-G | 3759712-A-G | ** | |||||||
3728653-G-T | 3860612-G-T | ** | |||||||
3732590-T-C | 3864549-T-C | ** | |||||||
3831115-C-A | 3963074-C-A | ** | |||||||
3881858-A-T | 4013817-A-T | ** | |||||||
3976124-A-T | 4108083-A-T | ** | |||||||
4070217-C-A | 4202176-C-A | ** | |||||||
4094681-A-G | 4226640-A-G | ** | |||||||
4174939-T-C | 4306898-T-C | ** | |||||||
4221256-T-G | 4353215-T-G | ** | |||||||
4221266-A-G | 4353225-A-G | ** | |||||||
4276461-C-T | 4408420-C-T | ** | |||||||
4455063-TACAC-T | 4587022-TACAC-T | ** | |||||||
4672129-C-A | 4804088-C-A | ** | |||||||
4740709-C-A | 4872668-C-A | ** | |||||||
4765270-G-T | 4897229-G-T | ** | |||||||
4862754-T-G | 4994713-T-G | ** | |||||||
4996107-A-G | 5128066-A-G | ** | |||||||
5170117-A-T | 5302076-A-T | ** | |||||||
5194005-T-C | 5325964-T-C | ** | |||||||
5257678-C-T | 5389637-C-T | ** | |||||||
5257688-C-A | 5389647-C-A | ** | |||||||
5290548-G-T | 5422507-G-T | ** | |||||||
5528588-C-A | 5660547-C-A | ** | |||||||
5606293-A-T | 5738252-A-T | ** | |||||||
5629260-C-A | 5761219-C-A | FT235642 | ** | ||||||
5650428-C-A | 5782387-C-A | ** | |||||||
5824774-C-A | 5956733-C-A | ** | |||||||
5853422-A-T | 5985381-A-T | ** | |||||||
5871968-C-T | 6003927-C-T | ** | |||||||
5948534-G-T | 6080493-G-T | ** | |||||||
5976912-G-A | 6108871-G-A | ** | |||||||
6102112-G-T | 6234071-G-T | ** | |||||||
6231172-A-G | 6363131-A-G | IR3_Dst | ** | ||||||
6354625-G-T | 6486584-G-T | ** | |||||||
6445343-C-A | 6577302-C-A | ** | |||||||
6626904-C-G | 6758863-C-G | ** | |||||||
6645542-A-T | 6777501-A-T | ** | |||||||
6773709-C-A | 6905668-C-A | ** | |||||||
6833397-T-C | 6965356-T-C | ** | |||||||
6855493-C-T | 6987452-C-T | ** | |||||||
7013321-C-A | 7145280-C-A | ** | |||||||
7041714-T-C | 7173673-T-C | ** | |||||||
7092479-G-A | 7224438-G-A | ** | |||||||
7107105-G-T | 7239064-G-T | Y83368 | ** | ||||||
7108177-G-A | 7240136-G-A | ** | |||||||
7131353-C-A | 7263312-C-A | ** | |||||||
7160831-C-A | 7292790-C-A | ** | |||||||
7195299-G-A | 7327258-G-A | ** | |||||||
7206830-A-G | 7338789-A-G | ** | |||||||
7223082-C-A | 7355041-C-A | ** | |||||||
7286803-A-G | 7418762-A-G | ** | |||||||
7301599-A-G | 7433558-A-G | ** | |||||||
7303254-C-A | 7435213-C-A | ** | |||||||
7331125-C-A | 7463084-C-A | Y45914 | ** | ||||||
7409545-C-A | 7541504-C-A | ** | |||||||
7461124-C-A | 7593083-C-A | IR1_L | ** | ||||||
7562137-C-A | 7694096-C-A | ** | |||||||
7622019-C-A | 7753978-C-A | ** | |||||||
7690096-C-A | 7822055-C-A | ** | |||||||
8002061-C-A | 8134020-C-A | ** | |||||||
8053464-C-A | 8185423-C-A | ** | |||||||
8080331-G-T | 8212290-G-T | ** | |||||||
8140403-C-A | 8272362-C-A | ** | |||||||
8281719-C-T | 8413678-C-T | ** | |||||||
8344304-G-T | 8476263-G-T | Y86548 | ** | ||||||
8350583-T-C | 8482542-T-C | Y86568 | ** | ||||||
8379764-A-G | 8511723-A-G | ** | |||||||
8452199-A-AG | 8584158-A-AG | ** | |||||||
8536139-C-A | 8668098-C-A | ** | |||||||
8660242-C-A | 8792201-C-A | ** | |||||||
8699014-C-A | 8830973-C-A | ** | |||||||
8709997-C-A | 8841956-C-A | ** | |||||||
8842496-C-T | 8974455-C-T | ** | |||||||
8879597-C-A | 9011556-C-A | ** | |||||||
9109597-G-T | ** | ||||||||
9075260-A-C | 9237651-A-C | ** | |||||||
9075295-T-G | 9237686-T-G | ** | |||||||
9076700-G-C | 9239091-G-C | ** | |||||||
9093387-G-T | 9255778-G-T | ** | |||||||
9430084-C-A | 9592475-C-A | ** | |||||||
9444619-G-T | 9607010-G-T | ** | |||||||
9470292-T-C | 9632683-T-C | ** | |||||||
9499316-C-A | 9661707-C-A | ** | |||||||
9540901-G-T | 9703292-G-T | IR3_Prx | ** | ||||||
9735596-T-G | 9897987-T-G | IR3_Prx | ** | ||||||
9735735-C-T | 9898126-C-T | IR3_Prx | ** | ||||||
9839518-C-G | 10001909-C-G | ** | |||||||
9877245-C-A | 10039636-C-A | ** | |||||||
9928953-G-GCA | 10091344-G-GCA | ** | |||||||
9929002-A-G | 10091393-A-G | ** | |||||||
9935395-C-A | 10097786-C-A | ** | |||||||
9942126-G-T | 10104517-G-T | ** | |||||||
9944055-C-T | 10106446-C-T | ** | |||||||
9962462-C-A | 10124853-C-A | ** | |||||||
9973955-T-A | 10136346-T-A | ** | |||||||
10013936-G-C | 10176327-G-C | ** | |||||||
10033093-C-T | 10195484-C-T | ** | |||||||
10033915-T-C | 10196306-T-C | ** | |||||||
10648139-T-C | ** | ||||||||
10651607-C-G | ** | ||||||||
10654528-A-G | ** | ||||||||
10661744-CA-C | ** | ||||||||
10661746-C-CGT | ** | ||||||||
10663688-ATTCCAT-A | ** | ||||||||
10672480-T-C | ** | ||||||||
10745375-C-T | ** | ||||||||
10754633-C-A | ** | ||||||||
10760684-T-TTTCCATTCCATTCCA | ** | ||||||||
10761253-AT-A | ** | ||||||||
10794199-C-A | ** | ||||||||
10818346-C-A | ** | ||||||||
10827680-C-A | ** | ||||||||
10837520-C-A | ** | ||||||||
10844555-C-A | ** | ||||||||
10844580-CCGCAA-C | ** | ||||||||
10844588-C-G | FT275599 | ** | |||||||
10844589-A-G | ** | ||||||||
10844590-A-C | ** | ||||||||
10844595-T-C | ** | ||||||||
10844618-C-T | ** | ||||||||
10844636-T-A | ** | ||||||||
10849622-A-C | ** | ||||||||
10851957-C-A | ** | ||||||||
10869029-A-G | ** | ||||||||
10875882-A-C | ** | ||||||||
10905087-G-A | ** | ||||||||
10916338-T-A | ** | ||||||||
10922002-G-T | ** | ||||||||
10927760-G-T | ** | ||||||||
10944015-CTTTCT-C | ** | ||||||||
10944027-A-C | ** | ||||||||
10944032-A-C | ** | ||||||||
10944037-T-A | ** | ||||||||
10944046-A-T | ** | ||||||||
10944047-T-C | ** | ||||||||
10945607-C-A | ** | ||||||||
10945632-C-A | ** | ||||||||
10949752-C-G | ** | ||||||||
10957913-G-T | ** | ||||||||
10971166-A-G | ** | ||||||||
10971172-T-A | ** | ||||||||
10972542-A-T | ** | ||||||||
10972754-G-T | ** | ||||||||
10977497-C-A | ** | ||||||||
10987084-C-A | ** | ||||||||
10990514-T-C | ** | ||||||||
11003893-A-C | ** | ||||||||
11007483-C-A | ** | ||||||||
11027260-T-C | ** | ||||||||
11031669-TC-T | ** | ||||||||
13197079-T-C | 11041403-T-C | ** | |||||||
13242863-C-A | 11087187-C-A | ** | |||||||
13253221-A-C | 11097545-A-C | ** | |||||||
13317113-G-A | 11161437-G-A | ** | |||||||
13480548-C-T | 11324872-C-T | ** | |||||||
13482929-T-C | 11327253-T-C | ** | |||||||
13486908-A-G | 11331232-A-G | ** | |||||||
13486910-A-AC | 11331234-A-AC | ** | |||||||
13523007-G-A | 11367331-G-A | ** | |||||||
13578372-C-A | 11422696-C-A | ** | |||||||
13586073-G-T | 11430397-G-T | ** | |||||||
13588520-C-A | 11432844-C-A | ** | |||||||
13601943-A-G | 11446267-A-G | ** | |||||||
13692801-A-G | 11537125-A-G | DYZ17 | ** | ||||||
13719651-A-G | 11563975-A-G | DYZ17 | ** | ||||||
11669818-T-A | DYZ17 | ** | |||||||
11672138-C-A | DYZ17 | ** | |||||||
13859839-C-A | 11739133-C-A | DYZ17 | ** | ||||||
13878454-C-A | 11757748-C-A | ** | |||||||
13929337-TCTTCCAATAAGATGA-T | 11808631-TCTTCCAATAAGATGA-T | ** | |||||||
14005931-A-G | 11885225-A-G | ** | |||||||
14007452-G-A | 11886746-G-A | ** | |||||||
14007454-T-A | 11886748-T-A | ** | |||||||
14007463-G-T | 11886757-G-T | ** | |||||||
14007579-A-G | 11886873-A-G | ** | |||||||
14027048-C-A | 11906342-C-A | ** | |||||||
14076153-C-A | 11955447-C-A | ** | |||||||
14085939-C-A | 11965233-C-A | ** | |||||||
14347788-C-A | 12227083-C-A | ** | |||||||
14352133-C-A | 12231428-C-A | ** | |||||||
14396474-A-G | 12275770-A-G | Y91283 | ** | ||||||
14432375-G-A | 12311648-G-A | ** | |||||||
14470867-C-A | 12350136-C-A | ** | |||||||
14471697-C-A | 12350966-C-A | ** | |||||||
14471747-C-A | 12351016-C-A | ** | |||||||
14482196-C-A | 12361465-C-A | ** | |||||||
14495620-C-A | 12383817-C-A | ** | |||||||
14551496-G-A | 12439697-G-A | ** | |||||||
14558285-C-A | 12446486-C-A | ** | |||||||
14570219-A-G | 12458419-A-G | ** | |||||||
14572988-C-A | 12461188-C-A | ** | |||||||
14657574-G-A | 12545639-G-A | ** | |||||||
14658168-ACCCACC-A | 12546233-ACCCACC-A | ** | |||||||
14682672-G-T | 12570738-G-T | ** | |||||||
14694374-C-A | 12582440-C-A | ** | |||||||
14696467-A-G | 12584533-A-G | ** | |||||||
14700947-A-C | 12589013-A-C | ** | |||||||
14764815-G-T | 12652884-G-T | ** | |||||||
14779592-G-T | 12667662-G-T | ** | |||||||
14779615-GA-G | 12667685-GA-G | ** | |||||||
14884698-GAAAAAAAA-G | 12772764-GAAAAAAAA-G | 26×A | ** | ||||||
14910923-T-C | 12798990-T-C | ** | |||||||
14910929-A-G | 12798996-A-G | ** | |||||||
14910936-A-C | 12799003-A-C | ** | |||||||
14926455-T-A | 12814520-T-A | ** | |||||||
14933768-C-A | 12821833-C-A | ** | |||||||
14960010-C-A | 12848085-C-A | ** | |||||||
14977311-T-TC | 12865386-T-TC | ** | |||||||
14981940-T-C | 12870008-T-C | ** | |||||||
12877311-A-ACCGC | ** | ||||||||
15012531-T-G | 12900619-T-G | ** | |||||||
15107002-A-G | 12995089-A-G | ** | |||||||
15109089-G-A | 12997176-G-A | ** | |||||||
15113504-T-C | 13001591-T-C | ** | |||||||
15116556-G-A | 13004643-G-A | ** | |||||||
15151493-A-C | 13039580-A-C | ** | |||||||
15178314-C-A | 13066400-C-A | ** | |||||||
15193423-C-A | 13081509-C-A | ** | |||||||
15197377-C-A | 13085463-C-A | ** | |||||||
15268869-G-A | 13156958-G-A | ** | |||||||
15402052-G-A | 13290172-G-A | ** | |||||||
15420079-T-C | 13308199-T-C | ** | |||||||
15442587-G-T | 13330707-G-T | ** | |||||||
15452503-G-A | 13340623-G-A | ** | |||||||
15607019-C-T | 13495139-C-T | ** | |||||||
15682289-C-A | 13570409-C-A | ** | |||||||
15696775-C-A | 13584895-C-A | ** | |||||||
15728666-A-G | 13616786-A-G | ** | |||||||
15733876-T-G | 13621996-T-G | ** | |||||||
15734145-T-C | 13622265-T-C | ** | |||||||
15758438-G-A | 13646558-G-A | ** | |||||||
15901381-C-T | 13789501-C-T | ** | |||||||
15931574-C-A | 13819694-C-A | ** | |||||||
15939204-C-A | 13827324-C-A | ** | |||||||
15997438-T-A | 13885558-T-A | ** | |||||||
16029653-C-A | 13917773-C-A | ** | |||||||
16029726-C-T | 13917846-C-T | ** | |||||||
16096099-T-A | 13984219-T-A | ** | |||||||
16290817-A-G | 14178937-A-G | ** | |||||||
16344431-C-A | 14232551-C-A | ** | |||||||
16352111-A-G | 14240231-A-G | ** | |||||||
16357360-A-G | 14245480-A-G | FT399931 | ** | ||||||
16412237-A-G | 14300357-A-G | ** | |||||||
16484393-C-A | 14372513-C-A | ** | |||||||
16503818-T-A | 14391938-T-A | ** | |||||||
16623592-G-T | 14511712-G-T | ** | |||||||
16640381-C-A | 14528501-C-A | ** | |||||||
16667171-G-T | 14555291-G-T | ** | |||||||
16703007-C-A | 14591127-C-A | ** | |||||||
16713080-C-A | 14601200-C-A | ** | |||||||
16765462-C-A | 14653582-C-A | ** | |||||||
16865193-T-A | 14753313-T-A | ** | |||||||
16922303-G-C | 14810423-G-C | ** | |||||||
16938154-C-A | 14826274-C-A | ** | |||||||
17013125-C-A | 14901245-C-A | ** | |||||||
17277467-A-C | 15165587-A-C | ** | |||||||
17339074-A-C | 15227194-A-C | ** | |||||||
17383694-C-A | 15271814-C-A | ** | |||||||
17406808-A-C | 15294928-A-C | ** | |||||||
17474805-C-A | 15362925-C-A | ** | |||||||
17549445-G-T | 15437565-G-T | ** | |||||||
17567268-C-A | 15455388-C-A | ** | |||||||
17653977-G-A | 15542097-G-A | ** | |||||||
17663134-A-C | 15551254-A-C | ** | |||||||
17713878-G-T | 15601998-G-T | ** | |||||||
17883665-AG-A | 15771785-AG-A | ** | |||||||
17960987-G-A | 15849107-G-A | ** | |||||||
17961001-G-C | 15849121-G-C | ** | |||||||
17961003-C-A | 15849123-C-A | ** | |||||||
17994982-G-T | 15883102-G-T | P7_Prx | ** | ||||||
18059468-C-A | 15947588-C-A | ** | |||||||
18059525-G-T | 15947645-G-T | ** | |||||||
18109346-C-A | 15997466-C-A | ** | |||||||
18135197-T-C | 16023317-T-C | ** | |||||||
18150646-C-A | 16038766-C-A | ** | |||||||
18185556-C-T | 16073676-C-T | ** | |||||||
18188248-G-T | 16076368-G-T | ** | |||||||
18188979-G-T | 16077099-G-T | ** | |||||||
18190745-C-A | 16078865-C-A | ** | |||||||
18200997-CA-C | 16089117-CA-C | ** | |||||||
18206593-C-A | 16094713-C-A | ** | |||||||
18222430-A-G | 16110550-A-G | ** | |||||||
18266184-C-A | 16154304-C-A | ** | |||||||
18564850-C-G | 16452970-C-G | ** | |||||||
18564920-G-A | 16453040-G-A | ** | |||||||
18672651-C-A | 16560771-C-A | ** | |||||||
18709744-AG-A | 16597864-AG-A | ** | |||||||
18728586-C-A | 16616706-C-A | ** | |||||||
18855434-C-T | 16743554-C-T | ** | |||||||
18925404-T-C | 16813524-T-C | ** | |||||||
18937519-G-T | 16825639-G-T | ** | |||||||
18949709-C-A | 16837829-C-A | ** | |||||||
18949841-C-A | 16837961-C-A | ** | |||||||
19007796-G-T | 16895916-G-T | ** | |||||||
19123274-C-A | 17011394-C-A | ** | |||||||
19201106-C-A | 17089226-C-A | ** | |||||||
19251784-C-T | 17139904-C-T | ** | |||||||
19280652-A-T | 17168772-A-T | ** | |||||||
19296717-TA-T | 17184837-TA-T | ** | |||||||
19319932-A-T | 17208052-A-T | ** | |||||||
19339473-C-A | 17227593-C-A | ** | |||||||
19358168-C-A | 17246288-C-A | ** | |||||||
19414904-C-T | 17303024-C-T | ** | |||||||
19489276-CT-C | 17377396-CT-C | ** | |||||||
19517451-C-A | 17405571-C-A | ** | |||||||
19527082-C-A | 17415202-C-A | ** | |||||||
19535505-C-G | 17423625-C-G | ** | |||||||
19551729-C-A | 17439849-C-A | ** | |||||||
19563079-C-A | 17451199-C-A | ** | |||||||
19827358-C-A | 17715478-C-A | P5_Prx | ** | ||||||
20101778-G-T | 17989898-G-T | P5_Dst | ** | ||||||
20213156-T-C | 18051270-T-C | FGC73346 Y133955 | P5_Dst | ** | |||||
20459063-A-T | 18297177-A-T | P5_Dst | ** | ||||||
21097302-G-A | 18935416-G-A | ** | |||||||
21132803-TCCCAAGTAGCTGGGA-T | 18970917-TCCCAAGTAGCTGGGA-T | ** | |||||||
21172057-T-A | 19010171-T-A | ** | |||||||
21175728-T-A | 19013842-T-A | ** | |||||||
21281334-C-A | 19119448-C-A | ** | |||||||
21299202-C-A | 19137316-C-A | ** | |||||||
21317733-G-C | 19155847-G-C | ** | |||||||
21319988-C-A | 19158102-C-A | ** | |||||||
21409935-G-T | 19248049-G-T | ** | |||||||
21836687-C-A | 19674801-C-A | ** | |||||||
21881002-G-A | 19719116-G-A | FTB67391 | ** | ||||||
21881011-C-G | 19719125-C-G | ** | |||||||
21923995-A-T | 19762109-A-T | ** | |||||||
21924027-C-A | 19762141-C-A | ** | |||||||
21926596-C-A | 19764710-C-A | ** | |||||||
21935031-A-G | 19773145-A-G | ** | |||||||
21953676-T-C | 19791790-T-C | ** | |||||||
21979896-G-A | 19818010-G-A | ** | |||||||
21979903-T-A | 19818017-T-A | ** | |||||||
21984082-C-A | 19822196-C-A | ** | |||||||
22077954-C-A | 19916068-C-A | ** | |||||||
22263952-T-C | 20102066-T-C | DYZ19 | ** | ||||||
22577144-C-A | 20415258-C-A | ** | |||||||
22587081-G-T | 20425195-G-T | ** | |||||||
22739606-T-A | 20577720-T-A | ** | |||||||
22739615-G-A | 20577729-G-A | ** | |||||||
22774889-T-C | 20613003-T-C | ** | |||||||
22864460-G-T | 20702574-G-T | ** | |||||||
22864474-C-A | 20702588-C-A | ** | |||||||
23138751-A-C | 20976865-A-C | ** | |||||||
23152606-C-A | 20990720-C-A | ** | |||||||
23184354-G-T | 21022468-G-T | ** | |||||||
23337077-G-C | 21175191-G-C | ** | |||||||
23345703-T-C | 21183817-T-C | ** | |||||||
23368860-C-A | 21206974-C-A | ** | |||||||
23380446-G-A | 21218560-G-A | ** | |||||||
23397176-A-C | 21235290-A-C | ** | |||||||
23475333-A-T | 21313447-A-T | ** | |||||||
23491008-C-A | 21329122-C-A | ** | |||||||
23544999-C-T | 21383113-C-T | ** | |||||||
23768870-C-T | 21606984-C-T | ** | |||||||
24391920-C-A | 22245773-C-A | ** | |||||||
24405906-TG-T | 22259759-TG-T | ** | |||||||
24405918-G-T | 22259771-G-T | ** | |||||||
24406564-C-T | 22260417-C-T | FTB40976 | ** | ||||||
24480079-T-C | 22333932-T-C | ** | |||||||
24480080-G-T | 22333933-G-T | ** | |||||||
26010258-A-ATG | 23864111-A-ATG | P1_Y1 | ** | ||||||
26064123-C-CG | 23917976-C-CG | P1_Y1 | ** | ||||||
26133115-G-T | 23986968-G-T | P1_Y1 | ** | ||||||
26170658-A-G | 24024511-A-G | P1_Y1 | ** | ||||||
27844541-T-TC | 25698394-T-TC | P1_Y2 | ** | ||||||
27872539-CTTTTTTT-C | 25726392-CTTTTTTT-C | P1_Y2 | 25×T | ** | |||||
28470365-C-A | 26324218-C-A | ** | |||||||
28521633-G-C | 26375486-G-C | ** | |||||||
28537645-T-A | 26391498-T-A | ** | |||||||
28537762-AG-A | 26391615-AG-A | ** | |||||||
28585136-A-G | 26438989-A-G | ** | |||||||
28591262-C-T | 26445115-C-T | ** | |||||||
28655508-A-G | 26509361-A-G | ** | |||||||
28724366-C-G | 26578219-C-G | ** | |||||||
28733062-T-G | 26586915-T-G | ** | |||||||
28758101-G-T | 26611954-G-T | ** | |||||||
28762747-C-A | 26616600-C-A | ** | |||||||
28772164-C-A | 26626017-C-A | ** | |||||||
28777823-C-A | 26631676-C-A | ** | |||||||
28782323-C-A | 26636176-C-A | ** | |||||||
28802801-A-G | 26656654-A-G | ** | |||||||
56837838-A-G | ** | ||||||||
56839442-C-A | ** | ||||||||
56839446-G-A | ** | ||||||||
56840968-G-C | ** | ||||||||
56877791-G-T | ** | ||||||||
22307392-G-C | 20145506-G-C | DYZ19 | *** | ||||||
22307393-T-A | 20145507-T-A | DYZ19 | *** | ||||||
13992181-G-A | 11871475-G-A | FT328979 | *** | ||||||
13140872-T-C | 10630358-T-C | *** | |||||||
22307395-A-T | 20145509-A-T | DYZ19 | *** | ||||||
22307404-G-C | 20145518-G-C | DYZ19 | *** | ||||||
24317731-C-G | 22171584-C-G | P3_t1 | 10×T | *** | |||||
25099629-G-A | 22953482-G-A | g1 | *** | ||||||
19504015-C-T | 17392135-C-T | *** | |||||||
13480049-C-A | 11324373-C-A | *** | |||||||
24508235-A-G | 22362088-A-G | *** | |||||||
15412250-C-A | 13300370-C-A | *** | |||||||
10022076-C-T | 10184467-C-T | *** | |||||||
7084153-CAA-C | 7216112-CAA-C | 12×A | *** | ||||||
4050051-C-A | 4182010-C-A | *** | |||||||
56851223-C-A | *** | ||||||||
15928394-TTTTG-T | 13816514-TTTTG-T | *** | |||||||
15351109-GA-G | 13239228-GA-G | 9×A | *** | ||||||
15842557-CTT-C,CT | 13730677-CTT-C,CT | 13×T | *** | ||||||
22797491-C-A | 20635605-C-A | *** | |||||||
22812658-A-T | 20650772-A-T | *** | |||||||
8287131-CTT-C | 8419090-CTT-C | 12×T | *** | ||||||
7146813-G-T | 7278772-G-T | *** | |||||||
13992190-T-C | 11871484-T-C | *** | |||||||
7783335-C-A | 7915294-C-A | *** | |||||||
4862488-C-A | 4994447-C-A | *** | |||||||
10792774-A-T | *** | ||||||||
11001890-C-A | *** | ||||||||
2778691-G-T | 2910650-G-T | *** | |||||||
2807039-TATA-T | 2938998-TATA-T | *** | |||||||
2894620-C-A | 3026579-C-A | *** | |||||||
4563350-C-T | 4695309-C-T | *** | |||||||
4616751-T-C | 4748710-T-C | *** | |||||||
6085530-C-T | 6217489-C-T | *** | |||||||
6144703-C-A | 6276662-C-A | IR3_Dst | *** | ||||||
6492176-A-G | 6624135-A-G | *** | |||||||
6981528-GA-G | 7113487-GA-G | 10×A | *** | ||||||
7222935-C-A | 7354894-C-A | *** | |||||||
7305030-C-A | 7436989-C-A | *** | |||||||
7361964-G-GTT | 7493923-G-GTT | 11×T | *** | ||||||
7642796-C-A | 7774755-C-A | *** | |||||||
7896843-CT-C | 8028802-CT-C | *** | |||||||
7899344-C-A | 8031303-C-A | *** | |||||||
8374919-G-A | 8506878-G-A | *** | |||||||
8384764-G-C | 8516723-G-C | *** | |||||||
9520113-C-A | 9682504-C-A | *** | |||||||
9769400-T-C | 9931791-T-C | *** | |||||||
9941179-T-C | 10103570-T-C | *** | |||||||
10024471-C-A | 10186862-C-A | *** | |||||||
10868788-CATTCCATTCA-C,CATTCCATTTC | *** | ||||||||
10868823-C-A,T | *** | ||||||||
11017634-C-A | *** | ||||||||
13215607-T-C | 11059931-T-C | *** | |||||||
13236502-T-A | 11080826-T-A | *** | |||||||
13275754-C-A | 11120078-C-A | *** | |||||||
13468236-G-A,C | 11312560-G-A,C | *** | |||||||
13473976-C-A | 11318300-C-A | *** | |||||||
13856031-A-G | 11735325-A-G | DYZ17 | *** | ||||||
12631481-CTTT-C,CT | 13×T | *** | |||||||
14788750-C-A | 12676821-C-A | *** | |||||||
14859158-C-A | 12747224-C-A | *** | |||||||
15060935-C-A | 12949027-C-A | *** | |||||||
15418543-C-A | 13306663-C-A | *** | |||||||
15479963-TG-G,T | 13368083-TG-G,T | *** | |||||||
15584872-C-A | 13472992-C-A | *** | |||||||
15740533-C-A | 13628653-C-A | *** | |||||||
15801554-C-A | 13689674-C-A | *** | |||||||
16016815-C-A | 13904935-C-A | *** | |||||||
16070273-C-T | 13958393-C-T | *** | |||||||
16070278-T-C | 13958398-T-C | *** | |||||||
16187658-C-A | 14075778-C-A | *** | |||||||
16245953-G-T | 14134073-G-T | *** | |||||||
16402626-C-A | 14290746-C-A | *** | |||||||
16423867-C-A | 14311987-C-A | *** | |||||||
16519316-CAAA-C,CAA | 14407436-CAAA-C,CAA | 15×A | *** | ||||||
16710451-C-T | 14598571-C-T | *** | |||||||
16719758-A-G | 14607878-A-G | *** | |||||||
16720484-A-G | 14608604-A-G | *** | |||||||
16989650-C-A | 14877770-C-A | *** | |||||||
17142112-C-A | 15030232-C-A | *** | |||||||
18136605-C-A | 16024725-C-A | *** | |||||||
18785389-C-A | 16673509-C-A | *** | |||||||
18848480-G-T | 16736600-G-T | *** | |||||||
18929026-C-A | 16817146-C-A | *** | |||||||
19128535-C-T | 17016655-C-T | *** | |||||||
19233920-C-A | 17122040-C-A | *** | |||||||
19302747-G-A | 17190867-G-A | *** | |||||||
19415943-C-A | 17304063-C-A | *** | |||||||
19445470-T-C | 17333590-T-C | *** | |||||||
20950543-T-C | 18788657-T-C | P4_Dst | *** | ||||||
21128936-C-A | 18967050-C-A | *** | |||||||
21140970-A-G | 18979084-A-G | *** | |||||||
21287959-C-T | 19126073-C-T | *** | |||||||
21425363-TA-A,T | 19263477-TA-A,T | *** | |||||||
21468272-C-A | 19306386-C-A | *** | |||||||
21690112-C-A | 19528226-C-A | *** | |||||||
21775442-A-G | 19613556-A-G | *** | |||||||
21915641-AG-A | 19753755-AG-A | *** | |||||||
21917135-C-A | 19755249-C-A | *** | |||||||
22201977-GA-G | 20040091-GA-G | 9×A | *** | ||||||
22551622-T-C | 20389736-T-C | *** | |||||||
22634926-G-T | 20473040-G-T | *** | |||||||
22997373-C-A | 20835487-C-A | *** | |||||||
23190255-A-G | 21028369-A-G | *** | |||||||
23377715-A-G | 21215829-A-G | *** | |||||||
24002935-C-A | 21856788-C-A | *** | |||||||
24383530-C-CA,CAA | 22237383-C-CA,CAA | 15×A | *** | ||||||
28515171-C-A | 26369024-C-A | *** | |||||||
28560624-G-T | 26414477-G-T | *** | |||||||
56837365-AGCTTT-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.