Thomas

FTDNA: B75374, BigY2: B75374

Tree Position

R-P312/S116 > DF19/S232 > DF88 > FGC11833 > Z17110 > S4268 > Z17112 > S10067 > Z17119

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B75374		BigY2
B75374
13687866-G-A 11532190-G-A A*
25971939-A-T 23825792-A-T P1_Y1 ***A*
18312591-C-T 16200711-C-T P6_Prx ***A*
19818214-T-C 17706334-T-C P5_Prx ***A*
13687122-G-A 11531446-G-A A*
21796833-C-G 19634947-C-G Z21088 YY++
18983728-T-C 16871848-T-C Y103251 YY++
21138085-G-A 18976199-G-A Z21087 YY++
21610760-G-T 19448874-G-T Z21141 YY++
22271669-G-T 20109783-G-T Z21089 DYZ19 ++
22252515-G-C 20090629-G-C BY43692 DYZ19 ***+
17903963-C-T 15792083-C-T Z18933 YY++
22462795-G-A 20300909-G-A BY21324 DYZ19 ++
22928421-G-A 20766535-G-A Y110154 YY++
23002333-T-C 20840447-T-C BY142268 YY++
23402631-G-A 21240745-G-A Z21143 YY++
23892136-C-A 21730250-C-A Y112471 Y+
23992567-G-A 21846420-G-A Y112604 ++
18129669-G-C 16017789-G-C Z21140 YY++
18665001-G-A 16553121-G-A Y102364 YY++
15347859-C-A 13235978-C-A Y93592 YY++
9143088-G-T 9305479-G-T Y88711 Y++
3092329-C-G 3224288-C-G Z21083 ++
15074042-T-G 12962132-T-G Y92975 YY++
8203299-C-G 8335258-C-G Y86088 YY++
8320513-T-C 8452472-T-C Z21134 YY++
7288515-C-T 7420474-C-T Z21084 Z4416 YY++
8716358-G-T 8848317-G-T Z21085 YY++
13212094-C-T 11056418-C-T Z43772 ++
13464678-T-A 11309002-T-A BY85694 ***+
13464680-T-A 11309004-T-A BY85695 ***+
14102794-G-A 11982088-G-A Y90326 YY11×TCTA++
22238233-G-C 20076347-G-C DYZ19 ****
19070489-C-A 16958609-C-A YY****
14960010-C-A 12848085-C-A **
15178314-C-A 13066400-C-A **
14977311-T-TC 12865386-T-TC **
14981940-T-C 12870008-T-C **
15151493-A-C 13039580-A-C **
15107002-A-G 12995089-A-G **
15116556-G-A 13004643-G-A **
15113504-T-C 13001591-T-C **
15109089-G-A 12997176-G-A **
12877311-A-ACCGC **
15012531-T-G 12900619-T-G **
14926455-T-A 12814520-T-A **
14933768-C-A 12821833-C-A **
7717685-TTTCC-T 7849644-TTTCC-T 13×TTCC**
14910936-A-C 12799003-A-C **
14910929-A-G 12798996-A-G **
14910923-T-C 12798990-T-C **
14884698-GAAAAAAAA-G 12772764-GAAAAAAAA-G 26×A**
14779615-GA-G 12667685-GA-G **
14779592-G-T 12667662-G-T **
14764815-G-T 12652884-G-T **
14700947-A-C 12589013-A-C **
15197377-C-A 13085463-C-A **
14696467-A-G 12584533-A-G **
14694374-C-A 12582440-C-A **
14682672-G-T 12570738-G-T **
14658168-ACCCACC-A 12546233-ACCCACC-A **
14657574-G-A 12545639-G-A **
14572988-C-A 12461188-C-A **
15193423-C-A 13081509-C-A **
16029653-C-A 13917773-C-A **
15268869-G-A 13156958-G-A **
16029726-C-T 13917846-C-T **
16765462-C-A 14653582-C-A **
16713080-C-A 14601200-C-A **
16703007-C-A 14591127-C-A **
16667171-G-T 14555291-G-T **
16640381-C-A 14528501-C-A **
16623592-G-T 14511712-G-T **
16503818-T-A 14391938-T-A **
16484393-C-A 14372513-C-A **
16412237-A-G 14300357-A-G **
16357360-A-G 14245480-A-G **
16352111-A-G 14240231-A-G **
16344431-C-A 14232551-C-A **
16290817-A-G 14178937-A-G **
16096099-T-A 13984219-T-A **
14558285-C-A 12446486-C-A **
15402052-G-A 13290172-G-A **
15997438-T-A 13885558-T-A **
15939204-C-A 13827324-C-A **
15931574-C-A 13819694-C-A **
15901381-C-T 13789501-C-T **
15758438-G-A 13646558-G-A **
15734145-T-C 13622265-T-C **
15733876-T-G 13621996-T-G **
15728666-A-G 13616786-A-G **
15696775-C-A 13584895-C-A **
15682289-C-A 13570409-C-A **
15607019-C-T 13495139-C-T **
15452503-G-A 13340623-G-A **
15442587-G-T 13330707-G-T **
15420079-T-C 13308199-T-C **
14570219-A-G 12458419-A-G **
14005931-A-G 11885225-A-G **
14551496-G-A 12439697-G-A **
10971166-A-G **
13253221-A-C 11097545-A-C **
13242863-C-A 11087187-C-A **
13197079-T-C 11041403-T-C **
11031669-TC-T **
11027260-T-C **
11007483-C-A **
11003893-A-C **
10990514-T-C **
10987084-C-A **
10977497-C-A **
10972754-G-T **
10972542-A-T **
10971172-T-A **
10957913-G-T **
13482929-T-C 11327253-T-C **
10949752-C-G **
10945632-C-A **
10945607-C-A **
10944047-T-C **
10944037-T-A **
10944032-A-C **
10944027-A-C **
10944015-CTTTCT-C **
10943486-C-T FT219220 **
10927760-G-T **
10922002-G-T **
10916338-T-A **
10905087-G-A **
10875882-A-C **
13317113-G-A 11161437-G-A **
13486908-A-G 11331232-A-G **
14495620-C-A 12383817-C-A **
14007454-T-A 11886748-T-A **
14482196-C-A 12361465-C-A **
14471747-C-A 12351016-C-A **
14471697-C-A 12350966-C-A **
14470867-C-A 12350136-C-A **
14432375-G-A 12311648-G-A **
14396474-A-G 12275770-A-G Y91283 **
14352133-C-A 12231428-C-A **
14347788-C-A 12227083-C-A **
14085939-C-A 11965233-C-A **
14076153-C-A 11955447-C-A **
14027048-C-A 11906342-C-A **
14007579-A-G 11886873-A-G **
14007463-G-T 11886757-G-T **
14007452-G-A 11886746-G-A **
13486910-A-AC 11331234-A-AC **
16922303-G-C 14810423-G-C **
13929337-TCTTCCAATAAGATGA-T 11808631-TCTTCCAATAAGATGA-T **
13878454-C-A 11757748-C-A **
13859839-C-A 11739133-C-A **
11672138-C-A **
11669818-T-A **
13719651-A-G 11563975-A-G **
13692801-A-G 11537125-A-G **
13601943-A-G 11446267-A-G **
13588520-C-A 11432844-C-A **
13586073-G-T 11430397-G-T **
13578372-C-A 11422696-C-A **
13566323-C-A 11410647-C-A FT219218 **
13523007-G-A 11367331-G-A **
16865193-T-A 14753313-T-A **
17994982-G-T 15883102-G-T P7_Prx **
16938154-C-A 14826274-C-A **
22587081-G-T 20425195-G-T **
23397176-A-C 21235290-A-C **
23380446-G-A 21218560-G-A **
23368860-C-A 21206974-C-A **
23345703-T-C 21183817-T-C **
23337077-G-C 21175191-G-C **
23184354-G-T 21022468-G-T **
23152606-C-A 20990720-C-A **
23138751-A-C 20976865-A-C **
22864474-C-A 20702588-C-A **
22864460-G-T 20702574-G-T **
22774889-T-C 20613003-T-C **
22739615-G-A 20577729-G-A **
22739606-T-A 20577720-T-A **
22577144-C-A 20415258-C-A **
23491008-C-A 21329122-C-A **
22263952-T-C 20102066-T-C DYZ19 **
22077954-C-A 19916068-C-A **
21984082-C-A 19822196-C-A **
21979903-T-A 19818017-T-A **
21979896-G-A 19818010-G-A **
21953676-T-C 19791790-T-C **
21935031-A-G 19773145-A-G **
21926596-C-A 19764710-C-A **
21924027-C-A 19762141-C-A **
21923995-A-T 19762109-A-T **
21881011-C-G 19719125-C-G **
21881002-G-A 19719116-G-A **
21836687-C-A 19674801-C-A **
21409935-G-T 19248049-G-T **
23475333-A-T 21313447-A-T **
23544999-C-T 21383113-C-T **
21317733-G-C 19155847-G-C **
28537762-AG-A 26391615-AG-A **
56840968-G-C **
56839446-G-A **
56837838-A-G **
28802801-A-G 26656654-A-G **
28782323-C-A 26636176-C-A **
28777823-C-A 26631676-C-A **
28772164-C-A 26626017-C-A **
28762747-C-A 26616600-C-A **
28758101-G-T 26611954-G-T **
28733062-T-G 26586915-T-G **
28724366-C-G 26578219-C-G **
28655508-A-G 26509361-A-G **
28591262-C-T 26445115-C-T **
28585136-A-G 26438989-A-G **
28537645-T-A 26391498-T-A **
23768870-C-T 21606984-C-T **
28521633-G-C 26375486-G-C **
28470365-C-A 26324218-C-A **
27872539-CTTTTTTT-C 25726392-CTTTTTTT-C P1_Y2 25×T**
27844541-T-TC 25698394-T-TC P1_Y2 **
26170658-A-G 24024511-A-G P1_Y1 **
26133115-G-T 23986968-G-T P1_Y1 **
26064123-C-CG 23917976-C-CG P1_Y1 **
26010258-A-ATG 23864111-A-ATG P1_Y1 **
24480080-G-T 22333933-G-T **
24480079-T-C 22333932-T-C **
24406564-C-T 22260417-C-T **
24405918-G-T 22259771-G-T **
24405906-TG-T 22259759-TG-T **
24391920-C-A 22245773-C-A **
21319988-C-A 19158102-C-A **
21299202-C-A 19137316-C-A **
17013125-C-A 14901245-C-A **
18059468-C-A 15947588-C-A **
18564850-C-G 16452970-C-G **
18266184-C-A 16154304-C-A **
18222430-A-G 16110550-A-G **
18206593-C-A 16094713-C-A **
18200997-CA-C 16089117-CA-C **
18190745-C-A 16078865-C-A **
18188979-G-T 16077099-G-T **
18188248-G-T 16076368-G-T **
18185556-C-T 16073676-C-T **
18150646-C-A 16038766-C-A **
18135197-T-C 16023317-T-C **
18109346-C-A 15997466-C-A **
18059525-G-T 15947645-G-T **
10851957-C-A **
18672651-C-A 16560771-C-A **
17961003-C-A 15849123-C-A **
17961001-G-C 15849121-G-C **
17960987-G-A 15849107-G-A **
17883665-AG-A 15771785-AG-A **
17713878-G-T 15601998-G-T **
17663134-A-C 15551254-A-C **
17653977-G-A 15542097-G-A **
17567268-C-A 15455388-C-A **
17549445-G-T 15437565-G-T **
17474805-C-A 15362925-C-A **
17406808-A-C 15294928-A-C **
17383694-C-A 15271814-C-A **
17339074-A-C 15227194-A-C **
17277467-A-C 15165587-A-C **
18564920-G-A 16453040-G-A **
18709744-AG-A 16597864-AG-A **
21281334-C-A 19119448-C-A **
19414904-C-T 17303024-C-T **
21175728-T-A 19013842-T-A **
21172057-T-A 19010171-T-A **
21132803-TCCCAAGTAGCTGGGA-T 18970917-TCCCAAGTAGCTGGGA-T **
21097302-G-A 18935416-G-A **
20459063-A-T 18297177-A-T P5_Dst **
20213156-T-C 18051270-T-C FGC73346 Y133955 P5_Dst **
20101778-G-T 17989898-G-T P5_Dst **
19827358-C-A 17715478-C-A P5_Prx **
19563079-C-A 17451199-C-A **
19551729-C-A 17439849-C-A **
19535505-C-G 17423625-C-G **
19527082-C-A 17415202-C-A **
19517451-C-A 17405571-C-A **
19489276-CT-C 17377396-CT-C **
19358168-C-A 17246288-C-A **
18728586-C-A 16616706-C-A **
19345791-G-A 17233911-G-A Z21086 **
19339473-C-A 17227593-C-A **
19319932-A-T 17208052-A-T **
19296717-TA-T 17184837-TA-T **
19280652-A-T 17168772-A-T **
19251784-C-T 17139904-C-T **
19201106-C-A 17089226-C-A **
19123274-C-A 17011394-C-A **
19007796-G-T 16895916-G-T **
18949841-C-A 16837961-C-A **
18949709-C-A 16837829-C-A **
18937519-G-T 16825639-G-T **
18925404-T-C 16813524-T-C **
18855434-C-T 16743554-C-T **
10869029-A-G **
10944046-A-T **
10849622-A-C **
10672214-C-T **
2921892-A-T 3053851-A-T **
2856445-T-A 2988404-T-A **
2854937-C-A 2986896-C-A **
2833331-C-A 2965290-C-A **
2790140-C-A 2922099-C-A **
2767878-A-G 2899837-A-G **
2746103-C-T 2878062-C-T Y81353 **
2691729-C-A 2823688-C-A **
2668923-C-A 2800882-C-A **
7195293-G-A 7327252-G-A **
18192045-G-T 16080165-G-T **
10672218-C-A **
10672205-A-C **
2980397-T-A 3112356-T-A **
6231161-C-A 6363120-C-A IR3_Dst **
56707167-T-G **
10881013-C-T **
10881010-T-C **
10881000-C-T **
10880995-C-T **
15161291-T-A 13049377-T-A **
2873873-C-A 3005832-C-A **
15106531-C-A 12994619-C-A **
16765005-C-A 14653125-C-A **
13486922-T-C 11331246-T-C **
14845302-G-T 12733368-G-T **
10661735-ACTTGAC-A **
2948456-T-C 3080415-T-C **
3028799-A-T 3160758-A-T **
10661716-TGC-T **
4455063-TACAC-T 4587022-TACAC-T **
5606293-A-T 5738252-A-T **
5528588-C-A 5660547-C-A **
5290548-G-T 5422507-G-T **
5257688-C-A 5389647-C-A **
5257678-C-T 5389637-C-T **
5194005-T-C 5325964-T-C **
5170117-A-T 5302076-A-T **
4996107-A-G 5128066-A-G **
4862754-T-G 4994713-T-G **
4765270-G-T 4897229-G-T **
4740709-C-A 4872668-C-A **
4672129-C-A 4804088-C-A **
4513928-G-T 4645887-G-T FT95402 **
4276461-C-T 4408420-C-T **
3061136-C-A 3193095-C-A **
4221266-A-G 4353225-A-G **
4221256-T-G 4353215-T-G **
4174939-T-C 4306898-T-C **
4094681-A-G 4226640-A-G **
3976124-A-T 4108083-A-T **
3881858-A-T 4013817-A-T **
3831115-C-A 3963074-C-A **
3732590-T-C 3864549-T-C **
3728653-G-T 3860612-G-T **
3627753-A-G 3759712-A-G **
3467253-CTCAAACCCTTG-C 3599212-CTCAAACCCTTG-C **
3344460-C-T 3476419-C-T **
3235750-T-A 3367709-T-A **
10661726-T-C **
10661715-A-T **
5650428-C-A 5782387-C-A **
15743579-C-A 13631699-C-A **
7938161-G-GAA 8070120-G-GAA 15×A**
4080839-C-A 4212798-C-A **
18109354-C-A 15997474-C-A **
14779604-T-C 12667674-T-C **
14779595-C-T 12667665-C-T **
14743889-C-A 12631958-C-A **
16018236-C-A 13906356-C-A **
10900081-C-A **
9772052-C-A 9934443-C-A **
16274335-C-A 14162455-C-A **
18614388-C-A 16502508-C-A **
16700107-C-A 14588227-C-A **
9839529-G-A 10001920-G-A **
19476770-C-A 17364890-C-A **
10973980-T-C **
17874283-C-A 15762403-C-A **
17707376-CAAAAAAAAAA-C 15595496-CAAAAAAAAAA-C 23×A**
28771461-C-A 26625314-C-A **
17960988-A-T 15849108-A-T **
20360958-T-TA 18199072-T-TA P5_Dst **
9426725-C-A 9589116-C-A **
16506246-C-A 14394366-C-A **
5393507-C-A 5525466-C-A **
27274935-G-A 25128788-G-A P1_g3 **
13474026-G-A 11318350-G-A **
59019179-C-T 56873032-C-T **
17675539-AAG-A 15563659-AAG-A **
24264574-T-C 22118427-T-C P3_b1 **
17663118-CAAA-C 15551238-CAAA-C 26×A**
21880980-C-T 19719094-C-T **
10799582-C-A **
9732892-T-A 9895283-T-A IR3_Prx **
15733877-C-T 13621997-C-T **
28724380-T-G 26578233-T-G **
15542235-C-A 13430355-C-A **
13963810-C-A 11843104-C-A **
28537698-C-A 26391551-C-A **
9941588-C-A 10103979-C-A **
18145706-C-A 16033826-C-A **
14779589-T-C 12667659-T-C **
7295803-C-A 7427762-C-A **
6775213-C-A 6907172-C-A **
22914593-C-A 20752707-C-A **
18127636-C-A 16015756-C-A **
8321465-G-T 8453424-G-T 5×TTTA**
4208416-C-A 4340375-C-A **
14479530-C-A 12358799-C-A **
15315427-A-G 13203532-A-G **
15201672-C-A 13089758-C-A **
7935834-T-G 8067793-T-G **
21442860-C-A 19280974-C-A **
13958505-T-A 11837799-T-A **
7663562-C-A 7795521-C-A **
21880988-G-A 19719102-G-A **
21175748-TC-T 19013862-TC-T **
24836734-G-GGGAA 22690587-G-GGGAA P3_b2 15×GGAA**
10677361-C-CACTAA **
24112763-C-A 21966616-C-A P3_b1 **
10920978-G-T **
5818429-C-A 5950388-C-A **
5629260-C-A 5761219-C-A FT235642 **
4070217-C-A 4202176-C-A **
56877791-G-T **
8140403-C-A 8272362-C-A **
8699014-C-A 8830973-C-A **
10661744-CA-C **
8660242-C-A 8792201-C-A **
8536139-C-A 8668098-C-A **
8452199-A-AG 8584158-A-AG **
10661746-C-CGT **
8379764-A-G 8511723-A-G **
10663688-ATTCCAT-A **
8350583-T-C 8482542-T-C Y86568 **
8344304-G-T 8476263-G-T Y86548 **
8281719-C-T 8413678-C-T **
8080331-G-T 8212290-G-T **
8879597-C-A 9011556-C-A **
10672480-T-C **
8053464-C-A 8185423-C-A **
8002061-C-A 8134020-C-A **
10745375-C-T **
10754633-C-A **
7690096-C-A 7822055-C-A **
7562137-C-A 7694096-C-A **
7461124-C-A 7593083-C-A IR1_L **
7409545-C-A 7541504-C-A **
7331125-C-A 7463084-C-A Y45914 **
10760684-T-TTTCCATTCCATTCCA **
8842496-C-T 8974455-C-T **
9109597-G-T **
10794199-C-A **
10013936-G-C 10176327-G-C **
9935395-C-A 10097786-C-A **
9944055-C-T 10106446-C-T **
9929002-A-G 10091393-A-G **
9928953-G-GCA 10091344-G-GCA **
9877245-C-A 10039636-C-A **
9962462-C-A 10124853-C-A **
9839518-C-G 10001909-C-G **
9735735-C-T 9898126-C-T IR3_Prx **
9973955-T-A 10136346-T-A **
9735596-T-G 9897987-T-G IR3_Prx **
9540901-G-T 9703292-G-T IR3_Prx **
9499316-C-A 9661707-C-A **
9075260-A-C 9237651-A-C **
10033093-C-T 10195484-C-T **
9470292-T-C 9632683-T-C **
9444619-G-T 9607010-G-T **
10033915-T-C 10196306-T-C **
9430084-C-A 9592475-C-A **
10648139-T-C **
10651607-C-G **
5824774-C-A 5956733-C-A **
9093387-G-T 9255778-G-T **
9076700-G-C 9239091-G-C **
9075295-T-G 9237686-T-G **
10654528-A-G **
10761253-AT-A **
7622019-C-A 7753978-C-A **
7303254-C-A 7435213-C-A **
6445343-C-A 6577302-C-A **
6855493-C-T 6987452-C-T **
6833397-T-C 6965356-T-C **
10844580-CCGCAA-C **
6773709-C-A 6905668-C-A **
10844588-C-G **
6645542-A-T 6777501-A-T **
7301599-A-G 7433558-A-G **
10844589-A-G **
10844590-A-C **
6354625-G-T 6486584-G-T **
10844555-C-A **
6231172-A-G 6363131-A-G IR3_Dst **
6102112-G-T 6234071-G-T **
10844595-T-C **
10844618-C-T **
10844636-T-A **
5976912-G-A 6108871-G-A **
5948534-G-T 6080493-G-T **
5871968-C-T 6003927-C-T **
5853422-A-T 5985381-A-T **
6942724-G-A 7074683-G-A **
6626904-C-G 6758863-C-G **
7013321-C-A 7145280-C-A **
7108177-G-A 7240136-G-A **
10818346-C-A **
7286803-A-G 7418762-A-G **
7223082-C-A 7355041-C-A **
7206830-A-G 7338789-A-G **
7195299-G-A 7327258-G-A **
7160831-C-A 7292790-C-A **
7131353-C-A 7263312-C-A **
9942126-G-T 10104517-G-T **
7107105-G-T 7239064-G-T Y83368 **
7092479-G-A 7224438-G-A **
7041714-T-C 7173673-T-C **
10827680-C-A **
10837520-C-A **
15928394-TTTTG-T 13816514-TTTTG-T ***
10868823-C-A,T ***
22634926-G-T 20473040-G-T ***
56837365-AGCTTT-A ***
13215607-T-C 11059931-T-C ***
13236502-T-A 11080826-T-A ***
22551622-T-C 20389736-T-C ***
10022076-C-T 10184467-C-T ***
22201977-GA-G 20040091-GA-G 9×A***
15351109-GA-G 13239228-GA-G 9×A***
56851223-C-A ***
4050051-C-A 4182010-C-A ***
22307392-G-C 20145506-G-C DYZ19 ***
13275754-C-A 11120078-C-A ***
22307393-T-A 20145507-T-A DYZ19 ***
13460967-G-T 11305291-G-T ***
23377715-A-G 21215829-A-G ***
10024471-C-A 10186862-C-A ***
13140872-T-C 10630358-T-C ***
15412250-C-A 13300370-C-A ***
28515171-C-A 26369024-C-A ***
13480049-C-A 11324373-C-A ***
23190255-A-G 21028369-A-G ***
28560624-G-T 26414477-G-T ***
24002935-C-A 21856788-C-A ***
26093836-C-G 23947689-C-G P1_Y1 ***
25099629-G-A 22953482-G-A g1 ***
22307395-A-T 20145509-A-T DYZ19 ***
24317731-C-G 22171584-C-G P3_t1 10×T***
24383530-C-CA,CAA 22237383-C-CA,CAA 15×A***
24508235-A-G 22362088-A-G ***
22997373-C-A 20835487-C-A ***
15842557-CTT-C,CT 13730677-CTT-C,CT 13×T***
11017634-C-A ***
22307404-G-C 20145518-G-C DYZ19 ***
22345945-C-G 20184059-C-G DYZ19 ******
15740533-C-A 13628653-C-A ***
13468236-G-A,C 11312560-G-A,C ***
4563350-C-T 4695309-C-T ***
7305030-C-A 7436989-C-A ***
2807039-TATA-T 2938998-TATA-T ***
14788750-C-A 12676821-C-A ***
2894620-C-A 3026579-C-A ***
14859158-C-A 12747224-C-A ***
7222935-C-A 7354894-C-A ***
15060935-C-A 12949027-C-A ***
17142112-C-A 15030232-C-A ***
16989650-C-A 14877770-C-A ***
10868788-CATTCCATTCA-C,CATTCCATTTC ***
16720484-A-G 14608604-A-G ***
16719758-A-G 14607878-A-G ***
16710451-C-T 14598571-C-T ***
6492176-A-G 6624135-A-G ***
16519316-CAAA-C,CAA 14407436-CAAA-C,CAA 15×A***
2778691-G-T 2910650-G-T ***
4616751-T-C 4748710-T-C ***
16423867-C-A 14311987-C-A ***
16402626-C-A 14290746-C-A ***
15418543-C-A 13306663-C-A ***
6144703-C-A 6276662-C-A IR3_Dst ***
16245953-G-T 14134073-G-T ***
16187658-C-A 14075778-C-A ***
15479963-TG-G,T 13368083-TG-G,T ***
16070278-T-C 13958398-T-C ***
16070273-C-T 13958393-C-T ***
15584872-C-A 13472992-C-A ***
6085530-C-T 6217489-C-T ***
16016815-C-A 13904935-C-A ***
15801554-C-A 13689674-C-A ***
18136605-C-A 16024725-C-A ***
12631481-CTTT-C,CT 13×T***
13473976-C-A 11318300-C-A ***
20950543-T-C 18788657-T-C P4_Dst ***
9941179-T-C 10103570-T-C ***
21917135-C-A 19755249-C-A ***
21915641-AG-A 19753755-AG-A ***
21775442-A-G 19613556-A-G ***
21690112-C-A 19528226-C-A ***
21468272-C-A 19306386-C-A ***
21425363-TA-A,T 19263477-TA-A,T ***
9769400-T-C 9931791-T-C ***
22812658-A-T 20650772-A-T ***
21287959-C-T 19126073-C-T ***
9520113-C-A 9682504-C-A ***
21140970-A-G 18979084-A-G ***
21128936-C-A 18967050-C-A ***
8287131-CTT-C 8419090-CTT-C 12×T***
7146813-G-T 7278772-G-T ***
7642796-C-A 7774755-C-A ***
13856031-A-G 11735325-A-G ***
7783335-C-A 7915294-C-A ***
19445470-T-C 17333590-T-C ***
19415943-C-A 17304063-C-A ***
19302747-G-A 17190867-G-A ***
19233920-C-A 17122040-C-A ***
8384764-G-C 8516723-G-C ***
19128535-C-T 17016655-C-T ***
8374919-G-A 8506878-G-A ***
18848480-G-T 16736600-G-T ***
18785389-C-A 16673509-C-A ***
7899344-C-A 8031303-C-A ***
11001890-C-A ***
7896843-CT-C 8028802-CT-C ***
4862488-C-A 4994447-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B753741032776074231107488928
Kit: B75374922125575162277438467
Used in age calculations1032776075162277488928
Counts of SNPs1820
Variant counts last updated 2020-05-18 02:39:55.


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