MacDonald

FTDNA: 145402, BigY2: 145402

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S699 > S756 > A6099 > A6100

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
145402		BigY2
145402
6341569-G-A 6473528-G-A ***A*
19885899-G-A 17774019-G-A P5_Prx ***A*
17427615-A-G 15315735-A-G Y53254 YY++
2859504-C-G 2991463-C-G BY56871 YY++
7220844-T-C 7352803-T-C BY63996 YY++
7880045-T-C 8012004-T-C BY68428 YY++
16681970-C-G 14570090-C-G BY109405 YY++
22771169-G-A 20609283-G-A BY140681 YY++
23882036-T-C 21720150-T-C BY24807 Y+
6843943-C-CGT 6975902-C-CGT 13×GT****
13470546-G-T 11314870-G-T *
13858431-C-A 11737725-C-A **
7717733-C-T 7849692-C-T ZS9819 **
16601537-C-G 14489657-C-G **
21084421-A-G 18922535-A-G Z272F23867 **
14570752-G-A 12458952-G-A FT157077 **
24432858-C-A 22286711-C-A **
26170423-A-AAAG 24024276-A-AAAG P1_Y1 9×AAG**
9732931-T-A 9895322-T-A IR3_Prx **
15969790-C-A 13857910-C-A **
13235626-C-T 11079950-C-T Z10433 **
16064822-C-T 13952942-C-T CTS5204 **
19013603-C-T 16901723-C-T K328 ****
16601518-G-T 14489638-G-T **
15921907-G-A 13810027-G-A ****
24446970-T-G 22300823-T-G **
16601525-C-T 14489645-C-T **
7038321-C-A 7170280-C-A ****
16351596-G-T 14239716-G-T ****
19562651-G-C 17450771-G-C ****
22461465-C-G 20299579-C-G DYZ19 *****
19741035-T-G 17629155-T-G P5_Prx **
15156479-C-A 13044566-C-A **
10992289-C-T **
10961497-A-C **
10961519-T-C **
10792404-T-C **
10792413-A-T **
10946764-C-A **
10921185-A-C **
3621482-G-T 3753441-G-T **
22810671-C-A 20648785-C-A **
10831371-C-T **
10831412-A-C **
10831412-A-ATTCTG **
10831438-G-C **
10831447-A-T **
27808430-C-A 25662283-C-A P1_Y2 **
24244643-G-T 22098496-G-T P3_b1 **
13870475-C-A 11749769-C-A **
7138187-C-A 7270146-C-A **
10992273-C-T **
20404471-AAAAG-A 18242585-AAAAG-A P5_Dst **
28754434-C-A 26608287-C-A **
6510613-C-A 6642572-C-A **
11027368-C-T **
11004393-G-GCCATT **
10998428-T-A **
10998430-C-T **
15986579-C-A 13874699-C-A **
15424809-G-T 13312929-G-T **
10744578-T-C FT183027 **
10903011-A-C **
7590807-C-A 7722766-C-A **
10961504-C-G **
10961509-T-TTCCTC **
10961523-C-T **
21963771-C-A 19801885-C-A **
3990663-T-A 4122622-T-A **
10895805-C-T **
10895820-C-A **
16539592-C-A 14427712-C-A **
28534327-C-A 26388180-C-A FTB22136 **
23264070-C-A 21102184-C-A **
22629839-C-A 20467953-C-A **
56848503-G-T **
10946733-C-T **
10946747-T-C **
24629531-T-TC 22483384-T-TC P3_t2 **
10801223-TCA-T **
10865539-A-C **
4770548-G-T 4902507-G-T **
2845146-T-C 2977105-T-C **
2845153-T-C 2977112-T-C **
6996675-C-A 7128634-C-A **
14319448-GATAT-G 12198742-GATAT-G 8×AT**
3876155-C-A 4008114-C-A **
28481044-C-A 26334897-C-A **
19575953-T-C 17464073-T-C BY49230 P5_Prx **
24432867-T-A 22286720-T-A **
17718451-A-G 15606571-A-G **
16305920-G-A 14194040-G-A **
27952178-C-A 25806031-C-A P1_Y2 **
10969951-T-G **
11031332-G-A **
11027351-C-A **
10868774-A-T **
2665622-C-A 2797581-C-A **
10003531-C-A 10165922-C-A **
10787936-T-C **
2718904-A-G 2850863-A-G **
2784375-A-G 2916334-A-G **
10824199-T-C **
13213951-C-A 11058275-C-A **
17310923-A-T 15199043-A-T FT181015 **
17310930-C-T 15199050-C-T **
10654093-C-G **
17718443-C-G 15606563-C-G **
27894878-A-ATG 25748731-A-ATG P1_Y2 **
16319575-C-A 14207695-C-A **
10875780-C-G **
8660297-C-A 8792256-C-A **
13961370-C-A 11840664-C-A FTA10462 **
11018215-T-C **
11018250-C-A **
10760604-G-T **
13695500-T-A 11539824-T-A **
13468280-C-A 11312604-C-A **
15342552-T-C 13230671-T-C **
20673814-T-TC 18511928-T-TC P4_Prx **
16938203-A-T 14826323-A-T **
10822687-A-T **
15899064-TAA-T 13787184-TAA-T 11×A**
11677227-G-T **
10992290-C-CA **
10992314-A-ACTTTC **
10992332-T-TTATATTCCAA **
6953400-C-A 7085359-C-A **
13717497-A-G 11561821-A-G **
5824680-C-A 5956639-C-A **
18717866-T-A 16605986-T-A **
17549400-C-A 15437520-C-A **
14425685-C-A 12304960-C-A **
11024780-C-G **
14529212-T-G 12417413-T-G **
24636393-C-T 22490246-C-T FT460981 P3_t2 **
19719329-A-AG 17607449-A-AG P5_Prx **
7430643-C-A 7562602-C-A **
18241912-C-A 16130032-C-A **
10900587-A-T **
19043081-T-C 16931201-T-C **
8712020-C-A 8843979-C-A **
2746752-C-A 2878711-C-A **
10822677-A-T **
10822678-T-C **
14035171-T-C 11914465-T-C **
15764173-C-A 13652293-C-A **
15619513-C-A 13507633-C-A **
3148460-G-C 3280419-G-C **
8218199-C-A 8350158-C-A **
14911836-C-A 12799903-C-A **
7775083-A-C 7907042-A-C **
23262773-C-A 21100887-C-A **
10934493-A-T **
22881239-A-AT 20719353-A-AT 9×T**
19043100-C-A 16931220-C-A **
24869969-G-A 22723822-G-A IR1_R **
13716681-C-T 11561005-C-T **
4932146-G-T 5064105-G-T **
7155564-C-A 7287523-C-A **
10768770-G-T FT430378 **
10882000-C-A **
21457372-A-T 19295486-A-T **
3831017-A-G 3962976-A-G **
7252196-C-T 7384155-C-T **
6090355-C-A 6222314-C-A **
10847071-T-A **
10847073-C-A **
10847107-C-T **
10989058-ATTCAG-A **
11018175-C-T **
16034172-C-CAA 13922292-C-CAA 10×A**
19677905-C-G 17566025-C-G P5_Prx **
16601458-G-A 14489578-G-A ZS11963 **
16601481-G-A 14489601-G-A **
16601515-G-C 14489635-G-C **
10662366-T-C **
11653395-C-A **
56858678-G-T **
14888095-A-G 12776161-A-G **
10921188-C-T **
10794786-C-T **
10946798-C-A **
10868761-T-G **
10868770-T-C **
10663814-T-G **
15406924-G-A 13295044-G-A **
4302665-C-A 4434624-C-A **
9056910-G-T **
10946765-T-A **
10946768-A-C **
10946771-T-C **
17584177-C-T 15472297-C-T **
6929616-C-A 7061575-C-A **
28429937-C-A 26283790-C-A P1_gr2 **
7656831-C-A 7788790-C-A **
17159004-T-A 15047124-T-A **
22170332-G-T 20008446-G-T **
10999699-C-A **
13809412-C-A 11688706-C-A **
7105039-C-A 7236998-C-A **
3832219-G-T 3964178-G-T **
10772361-A-C **
18717869-T-A 16605989-T-A **
5243381-G-T 5375340-G-T **
4416897-T-G 4548856-T-G **
27968356-T-TA 25822209-T-TA P1_Y2 **
13936346-C-A 11815640-C-A **
14656151-CAACAA-C 12544216-CAACAA-C **
10902993-A-T **
10902998-C-T **
10903019-G-A **
10903045-T-C **
10903045-TG-T **
10662666-T-C **
10995944-C-A **
14580840-C-A 12469040-C-A **
14529233-T-C 12417434-T-C **
17634581-C-A 15522701-C-A **
17376051-G-T 15264171-G-T **
9765870-G-A 9928261-G-A **
25994028-A-G 23847881-A-G P1_Y1 **
28549830-G-T 26403683-G-T **
28402003-G-T 26255856-G-T P1_gr2 **
6858669-A-G 6990628-A-G **
11659212-C-A FT450675 **
15287983-C-A 13176082-C-A **
10787902-T-C **
4444954-G-T 4576913-G-T **
23098810-C-A 20936924-C-A **
13894337-C-A 11773631-C-A **
15061717-G-T 12949809-G-T **
14356387-A-T 12235682-A-T **
3491488-G-T 3623447-G-T **
14395759-C-A 12275055-C-A **
7705531-C-A 7837490-C-A **
16601516-G-A 14489636-G-A **
5411975-C-A 5543934-C-A **
10665001-T-C **
13856163-G-T 11735457-G-T **
13218787-G-T 11063111-G-T **
2772538-G-A 2904497-G-A **
15918469-C-A 13806589-C-A **
23493525-C-A 21331639-C-A **
10921208-CTCAAT-C **
10662888-T-C **
19465811-C-A 17353931-C-A **
10925477-T-A **
13973112-C-A 11852406-C-A **
10920957-G-T **
14427115-C-A 12306390-C-A **
10982355-C-A **
19270535-T-G 17158655-T-G **
2670924-T-C 2802883-T-C **
2784502-A-T 2916461-A-T **
2813736-C-A 2945695-C-A **
2820039-G-A 2951998-G-A FGC70481 **
2901635-C-A 3033594-C-A **
2928227-C-A 3060186-C-A **
2979481-AC-A 3111440-AC-A **
3122649-T-A 3254608-T-A **
3218151-C-T 3350110-C-T **
3252549-T-A 3384508-T-A **
3275476-G-T 3407435-G-T **
3329347-T-A 3461306-T-A **
3341256-CA-C 3473215-CA-C **
3564379-A-C 3696338-A-C **
3598839-C-A 3730798-C-A **
3640298-C-A 3772257-C-A **
3784365-C-A 3916324-C-A **
3791186-A-T 3923145-A-T **
3865539-A-G 3997498-A-G **
3951399-C-A 4083358-C-A **
4069484-T-C 4201443-T-C **
4094940-A-T 4226899-A-T **
4136615-T-C 4268574-T-C **
4174594-G-A 4306553-G-A **
4241185-C-A 4373144-C-A **
4261852-C-A 4393811-C-A **
4271806-T-C 4403765-T-C **
4272523-C-G 4404482-C-G **
4272580-T-C 4404539-T-C **
4334940-T-G 4466899-T-G **
4416893-T-G 4548852-T-G **
4417354-T-C 4549313-T-C **
4417356-T-G 4549315-T-G **
4472335-A-T 4604294-A-T **
4630739-G-T 4762698-G-T **
4665406-G-A 4797365-G-A **
4751676-C-A 4883635-C-A **
4770190-A-G 4902149-A-G **
4864279-G-T 4996238-G-T **
4864289-G-T 4996248-G-T **
4872401-T-C 5004360-T-C **
4872422-G-A 5004381-G-A **
4897921-G-A 5029880-G-A **
5204383-C-A 5336342-C-A **
5220344-C-A 5352303-C-A **
5250680-T-A 5382639-T-A **
5273843-G-C 5405802-G-C **
5366919-TG-T 5498878-TG-T **
5417787-C-A 5549746-C-A **
5449458-T-G 5581417-T-G **
5453115-G-A 5585074-G-A **
5523141-G-T 5655100-G-T **
5537819-C-T 5669778-C-T **
5557368-C-A 5689327-C-A **
5601142-G-A 5733101-G-A **
5606678-T-C 5738637-T-C **
5627870-T-G 5759829-T-G **
5728011-G-A 5859970-G-A **
5844362-T-A 5976321-T-A **
5962194-G-C 6094153-G-C **
5967023-G-T 6098982-G-T **
5977065-T-C 6109024-T-C **
6147593-C-A 6279552-C-A IR3_Dst **
6426919-G-T 6558878-G-T **
6426926-G-T 6558885-G-T **
6469526-A-G 6601485-A-G **
6509981-A-C 6641940-A-C **
6510585-C-T 6642544-C-T **
6514177-T-G 6646136-T-G **
6517033-C-A 6648992-C-A **
6526179-GGACA-G 6658138-GGACA-G **
6596069-A-C 6728028-A-C **
6748138-G-C 6880097-G-C **
6767816-G-A 6899775-G-A **
6809351-C-A 6941310-C-A **
6830031-T-G 6961990-T-G **
6830534-G-A 6962493-G-A **
6831244-G-A 6963203-G-A **
6911393-T-A 7043352-T-A **
7012765-T-C 7144724-T-C **
7019261-G-C 7151220-G-C **
7052975-C-A 7184934-C-A **
7062602-C-A 7194561-C-A **
7107596-G-A 7239555-G-A **
7113776-G-T 7245735-G-T **
7114646-G-T 7246605-G-T **
7115490-T-A 7247449-T-A **
7123586-A-C 7255545-A-C **
7134213-C-A 7266172-C-A **
7142672-G-T 7274631-G-T **
7179763-A-C 7311722-A-C **
7199437-C-A 7331396-C-A **
7203942-T-A 7335901-T-A **
7210701-C-A 7342660-C-A **
7225444-G-A 7357403-G-A **
7248476-C-T 7380435-C-T **
7277715-A-G 7409674-A-G **
7294544-C-G 7426503-C-G **
7313076-T-C 7445035-T-C **
7322630-C-A 7454589-C-A **
7335613-C-A 7467572-C-A **
7338367-A-T 7470326-A-T **
7374907-A-C 7506866-A-C **
7414265-G-C 7546224-G-C **
7414273-GTC-G 7546232-GTC-G **
7417529-C-T 7549488-C-T **
7970359-C-A 8102318-C-A **
8056227-A-T 8188186-A-T **
8077011-C-G 8208970-C-G **
8078008-G-T 8209967-G-T **
8286789-A-G 8418748-A-G **
8321640-C-A 8453599-C-A **
8371834-A-G 8503793-A-G **
8668333-C-A 8800292-C-A **
8713119-C-A 8845078-C-A **
8911983-T-C 9043942-T-C **
9025505-G-A 9187896-G-A **
9385079-G-T 9547470-G-T **
9426803-C-A 9589194-C-A **
9433725-G-A 9596116-G-A **
9444708-A-G 9607099-A-G **
9507944-T-G 9670335-T-G **
9511433-T-C 9673824-T-C **
9511480-A-G 9673871-A-G **
9513284-G-C 9675675-G-C **
9521407-T-C 9683798-T-C **
9742604-C-A 9904995-C-A IR3_Prx **
9764074-A-G 9926465-A-G **
9764081-T-A 9926472-T-A **
9764089-C-G 9926480-C-G **
9764095-G-A 9926486-G-A **
9764180-G-C 9926571-G-C **
9927617-C-A 10090008-C-A **
9956093-C-A 10118484-C-A **
9977436-T-A 10139827-T-A **
9979216-C-A 10141607-C-A **
10023584-A-C 10185975-A-C **
10032763-C-T 10195154-C-T **
10050780-G-C 10213171-G-C **
10050789-C-G 10213180-C-G **
10662533-TG-T **
10672727-A-C **
10673473-A-G **
10686443-T-C **
10744832-C-A **
10752988-C-T **
10755277-G-A **
10759991-A-ATAACT **
10760005-C-T **
10760035-T-A **
10764414-T-C **
10768667-C-A **
10768762-G-C **
10768783-A-C **
10772571-C-T **
10772587-A-G **
10779194-C-T FT151831 **
10780650-C-A **
10784574-G-T **
10787909-T-C **
10787913-A-ACTCCC **
10787940-A-C **
10787942-C-A **
10787955-T-C **
10798278-C-G **
10805599-A-G **
10811573-C-A **
10814318-C-A **
10814895-C-A **
10814900-A-T **
10832327-G-T FTB9098 **
10838519-C-G **
10846446-C-T **
10859563-T-A **
10868745-T-C **
10877837-C-G **
10882007-T-G **
10883802-C-T FT89972 **
10884755-T-A **
10884812-C-A **
10892411-T-C **
10895840-C-CGGATTGAATA **
10909364-C-A **
10911602-A-T **
10918352-G-T **
10921008-C-T **
10921168-T-A **
10921202-A-C **
10921222-A-T **
10921235-C-A **
10926031-C-A **
10927841-T-TGCCAC **
10932909-C-A **
10935711-G-T **
10937857-C-A **
10940267-A-T **
10944017-T-C **
10945048-C-T **
10950958-T-C **
10954150-T-C **
10958150-A-G **
10963097-C-A **
10971529-T-C **
10971542-G-A **
10973511-A-G **
10974233-G-T **
10980621-A-T **
10993102-T-TA **
10998905-T-C **
10999756-T-A **
11018155-C-T **
11018164-T-A **
11021611-C-A **
11027297-A-G **
11033090-G-C **
11033346-T-G **
11038061-A-T **
13195954-AT-A 11040278-AT-A **
13196524-C-A 11040848-C-A **
13199349-G-A 11043673-G-A **
13200434-A-T 11044758-A-T **
13212456-A-C 11056780-A-C **
13230463-C-A 11074787-C-A BY84732 **
13255435-C-A 11099759-C-A **
13273764-T-C 11118088-T-C **
13287745-C-A 11132069-C-A **
13315473-T-G 11159797-T-G **
13327764-G-T 11172088-G-T **
13330305-A-G 11174629-A-G **
13355041-A-C 11199365-A-C **
13456736-C-A 11301060-C-A **
13563686-T-C 11408010-T-C **
13567250-C-A 11411574-C-A **
13612568-C-A 11456892-C-A **
13617557-C-A 11461881-C-A **
13625750-C-T 11470074-C-T **
13641285-CT-C 11485609-CT-C **
13717528-A-G 11561852-A-G **
11650534-T-G **
11653427-G-T **
13856360-A-ATCTAATAGCG 11735654-A-ATCTAATAGCG **
13887512-C-A 11766806-C-A **
13899305-A-G 11778599-A-G **
13919700-A-G 11798994-A-G **
13938062-T-A 11817356-T-A **
13953038-A-C 11832332-A-C **
13953083-T-C 11832377-T-C **
13993845-A-G 11873139-A-G **
13996433-A-C 11875727-A-C **
14021465-C-A 11900759-C-A **
14142317-A-G 12021611-A-G **
14181211-C-T 12060505-C-T **
14278438-G-C 12157732-G-C **
14306319-G-T 12185613-G-T **
14338877-T-A 12218172-T-A **
14367836-C-A 12247132-C-A **
14422266-T-C 12301541-T-C **
14427150-T-A 12306425-T-A **
14445138-G-C 12324411-G-C **
14456236-C-A 12335509-C-A **
14475910-A-T 12355179-A-T **
14514021-A-C 12402226-A-C **
14555068-T-C 12443269-T-C **
14592101-G-A 12480301-G-A **
14620088-T-C 12508286-T-C **
14648800-T-A 12536865-T-A **
14703463-T-G 12591529-T-G **
14711968-C-A 12600035-C-A **
14712122-A-C 12600189-A-C **
14712127-T-G 12600194-T-G **
14784819-C-T 12672889-C-T **
14784825-C-T 12672895-C-T **
14785437-T-A 12673507-T-A **
14815450-T-C 12703521-T-C **
14825900-A-C 12713967-A-C **
14871224-A-G 12759294-A-G **
15157816-C-A 13045903-C-A **
15239733-A-T 13127819-A-T **
15334922-A-T 13223040-A-T **
15352791-C-A 13240910-C-A **
15364704-A-C 13252824-A-C **
15369028-C-A 13257148-C-A **
15392327-G-A 13280447-G-A **
15406914-T-G 13295034-T-G **
15489420-T-C 13377540-T-C **
15489427-G-T 13377547-G-T **
15489444-C-T 13377564-C-T **
15533260-G-T 13421380-G-T **
15546187-T-G 13434307-T-G **
15653583-C-A 13541703-C-A **
15655327-A-C 13543447-A-C **
15655390-C-A 13543510-C-A **
15717815-TA-T 13605935-TA-T **
15742226-G-T 13630346-G-T **
15749382-C-A 13637502-C-A **
15792963-C-A 13681083-C-A **
15834137-T-G 13722257-T-G **
15848780-G-A 13736900-G-A **
15901518-T-A 13789638-T-A **
15911507-T-A 13799627-T-A **
15971494-C-T 13859614-C-T **
16000899-G-T 13889019-G-T **
16009374-G-T 13897494-G-T **
16055488-A-G 13943608-A-G **
16062168-T-A 13950288-T-A **
16079336-T-G 13967456-T-G **
16177256-A-G 14065376-A-G FT406600 **
16199521-G-T 14087641-G-T **
16220959-T-A 14109079-T-A **
16266029-T-A 14154149-T-A **
16278540-T-C 14166660-T-C **
16351882-G-T 14240002-G-T **
16484277-G-A 14372397-G-A **
16514507-T-A 14402627-T-A **
16516345-C-G 14404465-C-G **
16583392-G-T 14471512-G-T FTB29055 10×A**
16601467-GGC-G 14489587-GGC-G **
16601473-C-CAT 14489593-C-CAT **
16601484-C-T 14489604-C-T **
16601523-C-T 14489643-C-T **
16601535-A-G 14489655-A-G **
16605024-A-G 14493144-A-G **
16738691-A-T 14626811-A-T **
16738715-A-C 14626835-A-C **
16829416-T-C 14717536-T-C **
16842815-A-G 14730935-A-G **
16905854-G-A 14793974-G-A **
16931761-C-T 14819881-C-T **
16938212-TC-T 14826332-TC-T **
17004617-T-C 14892737-T-C **
17093681-C-G 14981801-C-G **
17211441-T-C 15099561-T-C **
17212454-T-C 15100574-T-C FT222312 **
17264852-A-C 15152972-A-C Y71347 **
17306372-G-T 15194492-G-T **
17374949-C-A 15263069-C-A **
17376034-G-T 15264154-G-T **
17385533-C-G 15273653-C-G **
17426245-A-C 15314365-A-C **
17549677-C-A 15437797-C-A **
17580714-G-C 15468834-G-C **
17597988-T-A 15486108-T-A **
17718457-C-T 15606577-C-T **
17798984-C-T 15687104-C-T **
17993898-C-CA 15882018-C-CA P7_Prx **
18052568-A-T 15940688-A-T 16×T**
18085582-G-T 15973702-G-T **
18087019-T-A 15975139-T-A **
18159063-G-A 16047183-G-A **
18166019-T-A 16054139-T-A **
18166053-A-G 16054173-A-G **
18317415-C-A 16205535-C-A P6_Prx **
18403155-T-C 16291275-T-C P6_Gap **
18465480-A-AG 16353600-A-AG P6_Dst **
18524482-G-A 16412602-G-A P6_Dst **
18742286-TC-T 16630406-TC-T **
18778956-C-A 16667076-C-A **
18826635-C-A 16714755-C-A **
18849395-T-C 16737515-T-C **
18890541-A-G 16778661-A-G **
18963920-T-G 16852040-T-G **
18963937-A-G 16852057-A-G **
18982468-C-A 16870588-C-A **
19086180-A-G 16974300-A-G **
19200975-C-A 17089095-C-A **
19241466-C-A 17129586-C-A **
19253312-C-T 17141432-C-T **
19286359-T-A 17174479-T-A **
19319927-A-G 17208047-A-G Y75121 **
19331696-A-G 17219816-A-G **
19423802-A-C 17311922-A-C **
19459226-C-T 17347346-C-T **
19465814-A-G 17353934-A-G **
19510252-A-T 17398372-A-T **
19522600-A-T 17410720-A-T **
19524505-T-A 17412625-T-A **
19575955-C-CTT 17464075-C-CTT P5_Prx **
19609381-A-G 17497501-A-G P5_Prx **
19619097-T-C 17507217-T-C P5_Prx **
19709553-T-C 17597673-T-C P5_Prx **
19741029-T-G 17629149-T-G P5_Prx **
19948182-C-CTTTCTTTT 17836302-C-CTTTCTTTT P5_Prx **
20132700-A-AG 18020820-A-AG P5_Dst **
20213008-C-G 18051122-C-G P5_Dst **
20229561-C-CAT 18067675-C-CAT P5_Dst **
20330543-T-G 18168657-T-G P5_Dst **
20470159-C-A 18308273-C-A P5_Dst **
20693731-T-C 18531845-T-C P4_Prx **
20774923-A-AAT 18613037-A-AAT P4_Prx **
20970569-A-T 18808683-A-T P4_Dst **
21108170-A-G 18946284-A-G **
21112084-C-A 18950198-C-A **
21115589-C-T 18953703-C-T BY53474FT170506 **
21136819-C-A 18974933-C-A **
21146237-C-T 18984351-C-T **
21195799-T-C 19033913-T-C **
21235044-C-A 19073158-C-A **
21267994-T-G 19106108-T-G **
21362851-A-T 19200965-A-T **
21362921-T-A 19201035-T-A **
21464392-A-T 19302506-A-T **
21464388-CAA-C 19302502-CAA-C **
21464401-C-CGGG 19302515-C-CGGG **
21464403-ACCA-G 19302517-ACCA-G **
21464413-C-T 19302527-C-T **
21464414-A-G 19302528-A-G **
21464415-CAT-C 19302529-CAT-C **
21526889-G-A 19365003-G-A **
21543144-C-A 19381258-C-A **
21629529-C-T 19467643-C-T **
21681703-G-C 19519817-G-C **
21775095-G-T 19613209-G-T **
21789536-T-C 19627650-T-C **
21836751-TTTA-T 19674865-TTTA-T **
21912048-A-G 19750162-A-G **
22027669-T-C 19865783-T-C **
22132415-AC-A 19970529-AC-A **
22210638-C-A 20048752-C-A **
22214737-G-T 20052851-G-T **
22218864-A-G 20056978-A-G DYZ19 **
22253170-G-A 20091284-G-A DYZ19 **
22624930-A-T 20463044-A-T **
22633883-T-C 20471997-T-C **
22639297-C-A 20477411-C-A **
22767679-T-A 20605793-T-A **
22935295-C-G 20773409-C-G **
22949794-G-A 20787908-G-A **
23036812-A-G 20874926-A-G **
23046067-C-T 20884181-C-T **
23046079-CA-C 20884193-CA-C **
23096794-A-T 20934908-A-T **
23128849-C-A 20966963-C-A **
23144316-A-T 20982430-A-T **
23184387-G-T 21022501-G-T **
23198815-T-G 21036929-T-G **
23204594-C-A 21042708-C-A **
23337034-C-A 21175148-C-A **
23449124-C-A 21287238-C-A **
23468536-G-A 21306650-G-A **
23623329-G-A 21461443-G-A **
21750606-T-A **
24080298-C-A 21934151-C-A P3_b1 **
24290658-C-G 22144511-C-G P3_t1 **
24409173-T-C 22263026-T-C **
24922233-T-C 22776086-T-C g1 **
25296999-C-A 23150852-C-A P2_r1 **
25994116-A-C 23847969-A-C P1_Y1 **
27297521-G-T 25151374-G-T P1_g3 **
27417857-G-T 25271710-G-T P1_g3 **
27792013-T-C 25645866-T-C P1_Y2 **
27894852-A-T 25748705-A-T P1_Y2 **
27894856-G-A 25748709-G-A P1_Y2 **
27991204-G-GACA 25845057-G-GACA P1_Y2 **
28024571-G-T 25878424-G-T P1_Y2 **
28101342-TTGTTG-T 25955195-TTGTTG-T P1_Y2 **
28481238-A-C 26335091-A-C **
28500831-G-T 26354684-G-T **
28502523-C-A 26356376-C-A **
28537240-C-A 26391093-C-A **
28555562-A-G 26409415-A-G **
28742561-G-C 26596414-G-C **
28758109-C-A 26611962-C-A **
28772980-C-A 26626833-C-A **
28780197-T-C 26634050-T-C **
56836586-T-TAACTC **
56844135-G-T **
56848914-A-G **
56849096-C-A **
13845388-T-G 11724682-T-G ***
17794204-TTC-T 15682324-TTC-T ***
19377412-G-GAGGA 17265532-G-GAGGA 7×AGGA***
13465970-G-A 11310294-G-A ***
7518490-T-A 7650449-T-A ***
13288657-G-A 11132981-G-A ***
15178065-C-A 13066151-C-A ***
21464976-GTTC-G 19303090-GTTC-G 6×TTC***
13822052-A-T 11701346-A-T ***
13453723-T-A 11298047-T-A ***
27546742-CTTTT-C 25400595-CTTTT-C P1_Y2 19×T***
13845362-T-A 11724656-T-A ***
13722179-G-T 11566503-G-T ***
22237620-A-G 20075734-A-G DYZ19 ***
22278966-G-T 20117080-G-T DYZ19 ***
24137850-TTG-T 21991703-TTG-T P3_b1 11×TG***
26190969-G-A 24044822-G-A P1_Y1 ***
7098881-C-A 7230840-C-A ***
24417006-AAAAGAAAG-A,AAAAG 22270859-AAAAGAAAG-A,AAAAG 18×AAAG***
10825643-T-A ***
13463888-G-T 11308212-G-T ***
14061365-C-T 11940659-C-T ***
6630512-CTTTT-C 6762471-CTTTT-C 15×T***
17675524-G-A 15563644-G-A ***
7246174-CAAAA-C 7378133-CAAAA-C 15×A***
11022924-C-A ***
13466016-T-C 11310340-T-C ***
13470491-C-T 11314815-C-T ***
17843091-ATTT-A,ATT 15731211-ATTT-A,ATT 18×T***
13453704-A-T 11298028-A-T ***
10841991-T-C ***
16805792-TA-T,TAA 14693912-TA-T,TAA 14×A***
10776061-A-T ***
10693925-ATTCCATTCAA-A,ATTCCATTCCG ***
24435600-TA-T 22289453-TA-T 9×A***
7312024-C-A 7443983-C-A ***
13465969-A-G 11310293-A-G ***
17597188-C-T 15485308-C-T ***
14421972-C-A 12301247-C-A ***
10841993-C-CTAATA ***
15416827-C-A 13304947-C-A ***
10993081-T-C ***
10993085-A-T ***
10993099-T-C ***
14283231-C-A 12162525-C-A ***
10926062-C-A ***
23412302-C-A 21250416-C-A ***
10755354-C-T ***
10926057-C-A ***
4687663-C-A 4819622-C-A ***
21262315-C-A 19100429-C-A ***
13453759-A-C 11298083-A-C ***
10747007-C-G ***
2669609-A-G 2801568-A-G ***
2833165-T-G 2965124-T-G ***
2860495-A-T 2992454-A-T ***
3622075-C-G 3754034-C-G ***
3641024-T-C 3772983-T-C ***
7146335-G-C 7278294-G-C ***
7156910-A-G 7288869-A-G ***
7166765-TATCTTAATC-T 7298724-TATCTTAATC-T ***
7461786-C-T 7593745-C-T IR1_L ***
7773993-C-A 7905952-C-A ***
8993891-T-C 9156282-T-C ***
9771974-C-A 9934365-C-A ***
9852921-G-C 10015312-G-C ***
10663335-C-T ***
10747017-C-CACT ***
10747020-T-A ***
10798400-G-T ***
10825624-T-G ***
10825633-A-C ***
10837736-T-G ***
10859416-A-T ***
10926063-C-T ***
10926065-A-C ***
10926075-A-C ***
10926076-A-C ***
10926087-T-G ***
10926097-A-G ***
10968507-T-C ***
11020146-T-C,CGTTCCATTGC ***
13480446-C-A 11324770-C-A ***
14610665-C-A 12498867-C-A ***
14949198-C-A 12837272-C-A ***
14959405-CTT-C 12847480-CTT-C 11×T***
16259087-C-G 14147207-C-G ***
17536588-C-A 15424708-C-A ***
18612789-AT-A 16500909-AT-A ***
18756519-C-A 16644639-C-A ***
19107258-C-A 16995378-C-A ***
21095605-C-T 18933719-C-T ***
21362521-T-C 19200635-T-C ***
21766533-AATATATATATATATATATATATATATAT-A 19604647-AATATATATATATATATATATATATATAT-A 19×AT***
23412283-G-GTT 21250397-G-GTT 10×T***
28510774-C-A 26364627-C-A ***
56859057-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.