Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A353 > Z3026 > Z16250 > A114 > CTS4466/S1136 > S1115 > Z3023 > FGC84010 > A541 > Z21065 > A195 > A761 > A88 > BY2878

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B5288
BigY2
B5288
BigY3
B5288
16116018-A-G 14004138-A-G P8_Prx ***A*A*
22224727-T-A 20062841-T-A DYZ19 ***A*
22286187-C-T 20124301-C-T DYZ19 ***A*
25578492-T-TA 23432345-T-TA P1_gr1 ***A*A*
59019990-G-C 56873843-G-C A*
13476894-C-A 11321218-C-A A*
5408371-C-T 5540330-C-T A*
19801802-G-A 17689922-G-A P5_Prx A*
25619567-C-T 23473420-C-T P1_gr1 A*
26333779-T-C 24187632-T-C P1_Y1 A*
14436274-T-C 12315547-T-C FGC57907DC260 BY1092 Y+++
6335208-CA-C 6467167-CA-C IR3_Dst 17×A+
2744031-T-G 2875990-T-G Y38402 YY+++
7594415-T-C 7726374-T-C Y39009 YY+++
14322105-C-T 12201399-C-T Y40442 YY+++
16966540-T-A 14854660-T-A BY111480 YY+++
19135523-T-C 17023643-T-C Y42872 YY+++
22028351-G-A 19866465-G-A Y43657 YY+++
22460518-C-T 20298632-C-T BY220547 DYZ19 ++**
23844699-A-G 21682813-A-G Y44511 Y+++
5471907-A-T 5603866-A-T BY58716 ++
7050350-G-A 7182309-G-A Y38795 YY**+
17251712-G-C 15139832-G-C FT82036 YY**+
19011056-A-C 16899176-A-C Y42809 YY**+
6767810-T-A 6899769-T-A FT81722 YY+
3410864-C-T 3542823-C-T FT81184 +
5580110-C-T 5712069-C-T FT81567 +
10820536-C-T FT432639 +
17281941-TGATAGATA-T 15170061-TGATAGATA-T 10×GATA******
18965995-C-CTTCT 16854115-C-CTTCT ***
18965999-C-T 16854119-C-T YY*
27785784-TA-T 25639637-TA-T P1_Y2 10×A**
18423887-C-A 16312007-C-A FT10269 P6_Gap 15×A**
13724806-T-G 11569130-T-G *****
13724808-G-A 11569132-G-A FT449657 *****
13473797-C-A 11318121-C-A **
7309271-AAAAG-A 7441230-AAAAG-A 5×AAAG**
15138012-C-T 13026099-C-T FT186803 15×T**
24115164-C-CCA 21969017-C-CCA P3_b1 23×CA**
13143210-G-T 10632696-G-T **
13475660-C-A 11319984-C-A **
19300431-A-G 17188551-A-G M10684 **
23364108-G-A 21202222-G-A **
5180585-T-A 5312544-T-A **
58975712-CC-T 56829565-CC-T **
18354811-A-T 16242931-A-T P6_Prx **
7308313-C-A 7440272-C-A **
13473829-C-T 11318153-C-T **
16271807-GAAAAA-G 14159927-GAAAAA-G 19×A**
5204503-G-A 5336462-G-A A459FGC45384 **
6231178-GAA-G 6363137-GAA-G IR3_Dst 12×A**
7436161-G-T 7568120-G-T **
13319567-C-A 11163891-C-A **
28761382-C-A 26615235-C-A 31×A**
20510994-A-C 18349108-A-C P5_Dst **
13488869-C-A 11333193-C-A **
13488877-G-A 11333201-G-A **
21505578-GTTT-G 19343692-GTTT-G 13×T**
10808651-C-A **
16598975-C-T 14487095-C-T **
18390082-AC-A 16278202-AC-A P6_Gap **
16515997-A-G 14404117-A-G **
16515999-C-A 14404119-C-A **
16516001-G-C 14404121-G-C **
16516002-T-C 14404122-T-C **
13473812-A-G 11318136-A-G **
27967297-C-T 25821150-C-T P1_Y2 **
11001389-T-G **
15688492-C-T 13576612-C-T **
21823265-C-A 19661379-C-A **
6767975-A-G 6899934-A-G **
21235000-G-C 19073114-G-C **
10661267-C-A **
28608429-T-G 26462282-T-G **
14153040-C-A 12032334-C-A **
24910926-T-A 22764779-T-A g1 **
18948171-C-A 16836291-C-A **
10821880-T-C **
7076128-C-A 7208087-C-A **
10807418-T-A **
10808623-C-A **
18423887-C-CAA 16312007-C-CAA P6_Gap 15×A**
23317687-G-GT 21155801-G-GT **
16150948-TAAA-T 14039068-TAAA-T P8_Dst 22×A**
6827037-G-T 6958996-G-T **
11034093-C-T **
18636612-C-CTT 16524732-C-CTT 17×T**
26411975-G-A 24265828-G-A P1_Y1 **
26411984-AGGT-A 24265837-AGGT-A P1_Y1 **
21462487-C-A 19300601-C-A **
10746959-A-C **
10912391-C-A **
10895762-A-G **
10895781-CATTCA-C **
11034066-T-A **
10776032-T-G **
27417741-T-A 25271594-T-A P1_g3 **
28481044-C-A 26334897-C-A **
20315657-T-TC 18153771-T-TC P5_Dst **
13829046-C-A 11708340-C-A **
16079406-A-C 13967526-A-C **
16277908-C-A 14166028-C-A **
19438576-G-T 17326696-G-T **
24910925-G-A 22764778-G-A g1 **
56846848-G-T **
10755418-A-AGTTCTTTCCG **
15321416-C-A 13209534-C-A **
19266744-C-A 17154864-C-A **
19415556-C-A 17303676-C-A **
14529234-CAAAAA-C 12417435-CAAAAA-C 15×A**
56685548-A-G **
3276059-C-A 3408018-C-A **
56836344-C-CA **
5240904-TC-T 5372863-TC-T **
6918276-C-A 7050235-C-A **
14424173-G-T 12303448-G-T **
10925550-A-T **
10776067-C-G **
17090702-C-A 14978822-C-A **
23773422-G-T 21611536-G-T **
21088771-C-A 18926885-C-A **
5393280-A-G 5525239-A-G **
16077540-AAGC-A 13965660-AAGC-A **
35473-C-A **
19370161-C-A 17258281-C-A **
10761315-A-G FT399421 **
10655425-C-A **
2708052-C-A 2840011-C-A **
2738696-C-A 2870655-C-A **
2755470-G-A 2887429-G-A **
2791452-G-A 2923411-G-A **
2853508-C-G 2985467-C-G Y18093 **
2853548-A-T 2985507-A-T **
2905901-C-A 3037860-C-A **
3033057-T-C 3165016-T-C **
3033058-G-A 3165017-G-A **
3051185-C-A 3183144-C-A **
3084044-T-C 3216003-T-C **
3088772-C-A 3220731-C-A **
3111745-C-A 3243704-C-A **
3148715-A-C 3280674-A-C **
3267406-A-G 3399365-A-G **
3367091-G-C 3499050-G-C **
3367114-C-A 3499073-C-A **
3389224-A-AT 3521183-A-AT **
3490565-G-T 3622524-G-T **
3628162-C-T 3760121-C-T **
3628172-C-A 3760131-C-A **
3628185-T-C 3760144-T-C **
3651356-T-C 3783315-T-C **
3671960-C-T 3803919-C-T **
3851734-T-C 3983693-T-C **
3953883-G-T 4085842-G-T **
3953885-C-A 4085844-C-A **
3953903-C-A 4085862-C-A **
3953921-C-A 4085880-C-A **
4063916-C-T 4195875-C-T **
4070720-C-A 4202679-C-A **
4103221-T-C 4235180-T-C **
4254804-C-A 4386763-C-A **
4310529-C-A 4442488-C-A FTA44111 **
4353831-C-A 4485790-C-A **
4469874-C-G 4601833-C-G **
4469880-T-C 4601839-T-C **
4469901-T-A 4601860-T-A **
4503176-T-A 4635135-T-A **
4537829-T-G 4669788-T-G **
4627058-C-A 4759017-C-A **
4630904-T-G 4762863-T-G **
4630914-T-C 4762873-T-C **
4778341-T-A 4910300-T-A **
4779991-TG-T 4911950-TG-T **
4919975-C-A 5051934-C-A **
4968824-A-C 5100783-A-C **
4969216-C-A 5101175-C-A **
5017543-C-T 5149502-C-T **
5204073-G-A 5336032-G-A **
5204452-C-G 5336411-C-G **
5204473-G-A 5336432-G-A **
5204487-T-C 5336446-T-C **
5204499-A-T 5336458-A-T **
5292858-C-A 5424817-C-A **
5313556-C-A 5445515-C-A **
5341495-T-A 5473454-T-A **
5341505-T-C 5473464-T-C **
5359650-G-T 5491609-G-T **
5366888-C-A 5498847-C-A **
5471789-G-T 5603748-G-T **
5524082-C-A 5656041-C-A **
5615291-C-A 5747250-C-A **
5637403-A-G 5769362-A-G **
5721006-C-A 5852965-C-A **
5800521-C-A 5932480-C-A **
5824251-C-A 5956210-C-A **
5828780-C-A 5960739-C-A **
5828782-C-A 5960741-C-A **
5828792-C-A 5960751-C-A **
5828797-C-A 5960756-C-A **
5887720-C-G 6019679-C-G **
5887730-C-A 6019689-C-A **
5967494-C-T 6099453-C-T **
5976991-A-C 6108950-A-C **
5976992-C-A 6108951-C-A **
6021774-C-A 6153733-C-A **
6046315-A-T 6178274-A-T **
6149974-T-A 6281933-T-A IR3_Dst **
6152712-A-T 6284671-A-T IR3_Dst **
6152752-G-T 6284711-G-T IR3_Dst **
6152762-T-C 6284721-T-C IR3_Dst **
6152774-A-C 6284733-A-C IR3_Dst **
6187554-G-T 6319513-G-T IR3_Dst **
6195262-C-A 6327221-C-A IR3_Dst **
6195286-C-A 6327245-C-A IR3_Dst **
6195288-C-A 6327247-C-A IR3_Dst **
6195306-C-A 6327265-C-A IR3_Dst **
6195314-C-A 6327273-C-A IR3_Dst **
6328731-T-A 6460690-T-A IR3_Dst **
6328755-A-G 6460714-A-G IR3_Dst **
6328762-C-A 6460721-C-A IR3_Dst **
6328764-G-A 6460723-G-A IR3_Dst **
6358034-G-T 6489993-G-T **
6358128-C-T 6490087-C-T FT173703 **
6434646-T-C 6566605-T-C **
6464741-C-A 6596700-C-A **
6509850-T-C 6641809-T-C **
6541296-T-C 6673255-T-C **
6714691-CA-C 6846650-CA-C **
6714764-C-A 6846723-C-A **
6769781-C-A 6901740-C-A **
6773756-C-A 6905715-C-A **
6816769-T-A 6948728-T-A **
6816782-C-G 6948741-C-G **
6829455-C-A 6961414-C-A **
6922862-A-C 7054821-A-C **
6957715-C-T 7089674-C-T **
7012732-C-A 7144691-C-A **
7019190-G-A 7151149-G-A **
7038429-G-T 7170388-G-T **
7040539-A-G 7172498-A-G **
7097969-A-G 7229928-A-G **
7138374-T-C 7270333-T-C **
7139274-A-T 7271233-A-T **
7142021-C-A 7273980-C-A **
7163281-G-T 7295240-G-T **
7197342-A-T 7329301-A-T **
7199865-C-A 7331824-C-A **
7209824-C-A 7341783-C-A **
7235105-C-G 7367064-C-G **
7237228-G-A 7369187-G-A **
7304491-G-C 7436450-G-C **
7304501-C-G 7436460-C-G **
7378587-C-T 7510546-C-T **
7390632-G-A 7522591-G-A **
7390633-A-C 7522592-A-C **
7390639-T-A 7522598-T-A **
7390645-T-C 7522604-T-C **
7390651-A-C 7522610-A-C **
7390655-A-G 7522614-A-G **
7390675-A-T 7522634-A-T **
7409461-C-A 7541420-C-A **
7409466-C-A 7541425-C-A **
7416642-C-T 7548601-C-T **
7420604-C-A 7552563-C-A **
7420640-C-A 7552599-C-A **
7428284-C-A 7560243-C-A **
7444155-C-G 7576114-C-G **
7541142-C-A 7673101-C-A **
7582038-C-T 7713997-C-T Y46148 **
7713149-C-A 7845108-C-A **
7759079-C-A 7891038-C-A **
7774108-G-T 7906067-G-T **
7821323-C-A 7953282-C-A **
7918508-C-A 8050467-C-A **
8072428-G-A 8204387-G-A **
8076842-A-G 8208801-A-G **
8153772-C-A 8285731-C-A **
8153959-C-G 8285918-C-G **
8153969-T-G 8285928-T-G **
8173749-A-T 8305708-A-T **
8173785-A-T 8305744-A-T **
8176060-A-G 8308019-A-G **
8214301-C-G 8346260-C-G **
8237402-G-T 8369361-G-T **
8673200-C-A 8805159-C-A **
8678112-C-T 8810071-C-T **
8699106-G-T 8831065-G-T **
8709983-A-T 8841942-A-T **
8749050-C-A 8881009-C-A **
8807490-G-T 8939449-G-T **
8840486-C-A 8972445-C-A **
8865778-G-T 8997737-G-T **
8913027-C-A 9044986-C-A **
8914765-G-T 9046724-G-T **
8970845-A-G 9133236-A-G **
8984967-G-T 9147358-G-T **
8988163-A-T 9150554-A-T **
9030198-G-T 9192589-G-T **
9063799-C-G 9226190-C-G **
9307437-T-A 9469828-T-A **
9440272-C-A 9602663-C-A **
9522572-C-A 9684963-C-A **
9538040-G-A 9700431-G-A IR3_Prx **
9622399-G-T 9784790-G-T IR3_Prx **
9622400-T-G 9784791-T-G IR3_Prx **
9622416-T-G 9784807-T-G IR3_Prx **
9622417-G-T 9784808-G-T IR3_Prx **
9622420-T-G 9784811-T-G IR3_Prx **
9735641-G-A 9898032-G-A IR3_Prx **
9773507-C-A 9935898-C-A **
9941136-A-G 10103527-A-G **
9956729-AG-A 10119120-AG-A **
9971726-G-T 10134117-G-T **
9977457-C-A 10139848-C-A **
10000344-C-A 10162735-C-A **
10005905-C-A 10168296-C-A **
10025222-T-G 10187613-T-G **
10050862-C-A 10213253-C-A **
10059522-C-A 10221913-C-A **
10659518-A-G **
10659523-A-C **
10659528-A-C **
10661337-C-A **
10661342-C-A **
10662259-C-A **
10666877-T-C **
10671434-C-A **
10677324-C-A **
10679685-C-A **
10746945-T-TTCGTGTTTAC **
10750858-C-A **
10755307-C-T **
10755425-T-A **
10773146-C-A **
10776020-C-A **
10776043-T-TACGCA **
10776085-C-A **
10776312-G-T **
10777491-C-G **
10777522-T-G **
10798080-C-A **
10808577-A-G **
10808584-T-A **
10808599-T-TCCAGC **
10808625-C-CCATTT **
10808635-G-A **
10808637-A-C **
10841009-CTCCATTCCATTCCATTCCAT-C **
10892641-C-A **
10895797-A-G **
10898910-C-A **
10911808-A-T **
10925443-C-G **
10935615-T-C **
10946541-T-A **
10964834-C-A **
10965424-C-G **
10972205-A-T **
10972233-C-A **
10980026-G-A **
10986936-C-G **
10999032-C-A **
11010787-C-A **
11025962-C-A **
11034047-C-A **
11034065-A-C **
13199237-C-G 11043561-C-G **
13200366-C-A 11044690-C-A **
13228318-C-A 11072642-C-A **
13235664-C-A 11079988-C-A **
13255803-C-T 11100127-C-T **
13257937-C-A 11102261-C-A **
13309851-C-A 11154175-C-A **
13328734-G-A 11173058-G-A **
13331685-C-G 11176009-C-G **
13385098-C-A 11229422-C-A **
13429807-C-A 11274131-C-A **
13457654-TCCATTCCAATCCATTCCA-T 11301978-TCCATTCCAATCCATTCCA-T **
13462084-C-A 11306408-C-A **
13475632-G-C 11319956-G-C **
13475638-C-T 11319962-C-T **
13475649-C-A 11319973-C-A **
13475667-T-A 11319991-T-A **
13475686-G-A 11320010-G-A **
13486662-A-C 11330986-A-C **
13486672-C-T 11330996-C-T **
13522836-C-T 11367160-C-T **
13531714-G-T 11376038-G-T **
13568826-C-A 11413150-C-A **
13600746-C-A 11445070-C-A **
13601887-C-A 11446211-C-A **
13623373-G-T 11467697-G-T FT446640 **
13624219-C-A 11468543-C-A **
13624240-C-G 11468564-C-G **
13638854-C-A 11483178-C-A **
13640125-T-C 11484449-T-C **
13641363-T-C 11485687-T-C **
13724769-ATGGAATGGAA-G 11569093-ATGGAATGGAA-G **
11657649-A-T **
11658574-C-A **
13804403-C-A 11683697-C-A **
13859940-G-C 11739234-G-C **
13881228-C-A 11760522-C-A **
13895309-C-A 11774603-C-A **
13919232-A-C 11798526-A-C **
13934922-C-T 11814216-C-T **
13938744-C-T 11818038-C-T **
13949536-A-G 11828830-A-G **
13989083-T-G 11868377-T-G **
14029269-C-T 11908563-C-T **
14033902-A-T 11913196-A-T **
14052979-T-C 11932273-T-C **
14053540-G-GA 11932834-G-GA **
14057150-G-T 11936444-G-T **
14057202-G-T 11936496-G-T **
14057217-T-G 11936511-T-G **
14065376-C-A 11944670-C-A **
14123973-G-T 12003267-G-T **
14177883-G-T 12057177-G-T **
14180905-G-A 12060199-G-A **
14181796-A-G 12061090-A-G **
14183117-C-A 12062411-C-A **
14203575-A-C 12082869-A-C **
14203579-G-C 12082873-G-C **
14203581-G-C 12082875-G-C **
14203612-T-C 12082906-T-C **
14203893-A-C 12083187-A-C **
14234652-G-C 12113946-G-C **
14286948-C-A 12166242-C-A **
14295398-A-T 12174692-A-T **
14348049-C-T 12227344-C-T **
14351240-T-C 12230535-T-C **
14357042-A-T 12236337-A-T **
14357053-C-A 12236348-C-A **
14366450-G-T 12245745-G-T **
14397635-C-A 12276931-C-A **
14405104-C-T 12284401-C-T **
14430459-G-T 12309732-G-T **
14430469-T-A 12309742-T-A **
14442894-C-A 12322167-C-A **
14470487-T-C 12349756-T-C **
14479659-C-A 12358928-C-A **
12371117-T-C **
12371137-G-T FGC78280 **
12371149-G-T **
14502703-G-A 12390908-G-A **
14519472-T-A 12407673-T-A **
14529114-A-G 12417315-A-G **
14550680-G-A 12438881-G-A **
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7996467-C-A 8128426-C-A ***
8056050-G-T 8188009-G-T ***
8073531-C-A 8205490-C-A ***
8351813-C-A 8483772-C-A ***
10824882-G-T ***
10865941-C-T ***
10987788-C-T ***
10987911-C-A ***
10988603-T-G ***
13273125-C-A 11117449-C-A ***
13453123-TCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-T 11297447-TCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-T 14×CATTC***
13453280-G-C 11297604-G-C ***
13453281-T-TTGGG 11297605-T-TTGGG ***
13453291-T-A 11297615-T-A ***
13456043-C-CGGTTT 11300367-C-CGGTTT ***
13487582-C-T 11331906-C-T ***
13585519-C-A 11429843-C-A ***
13666161-C-A 11510485-C-A ***
11652945-T-C ***
11653529-A-G ***
13799051-G-T 11678345-G-T ***
13800594-C-A 11679888-C-A ***
14266351-A-G 12145645-A-G ***
14286784-CTTTTTTTTT-C 12166078-CTTTTTTTTT-C 22×T***
14550518-C-A 12438719-C-A ***
14819674-CTTTTT-C,CTT 12707741-CTTTTT-C,CTT 15×T***
15073436-TA-T 12961526-TA-T ***
15996272-C-A 13884392-C-A ***
16369735-GAAAA-G 14257855-GAAAA-G 15×A***
17690104-G-GA 15578224-G-GA 9×A***
18185325-C-T 16073445-C-T ***
18810896-C-T 16699016-C-T FTA12324 ***
19438446-G-GAAGA,GAAGAAAGA 17326566-G-GAAGA,GAAGAAAGA 15×AAGA***
21370887-T-A 19209001-T-A ***
22171496-G-T 20009610-G-T ***
23572576-A-C 21410690-A-C ***
23732232-CA-C,CAA 21570346-CA-C,CAA 17×A***
28155670-A-C 26009523-A-C P1_b4 ***
56833594-A-ATTATG,G ***
23098816-CAAAA-C,CAAAAA 20936930-CAAAA-C,CAAAAA 25×A***
5275954-CAA-C 5407913-CAA-C 27×A***
12377234-ATT-A ***
5240905-C-CCCTTCCTT 5372864-C-CCCTTCCTT 13×CCTT***
6752310-T-G 6884269-T-G ***
14565720-G-A 12453920-G-A ***
14565724-C-T 12453924-C-T ***
14565729-T-C 12453929-T-C ***
14565733-T-C 12453933-T-C FT245957 ***
14565737-T-C 12453937-T-C FT245958 ***
14565739-GGGT-G 12453939-GGGT-G ***
22420166-G-C 20258280-G-C DYZ19 ***
23372219-CT-C,CTT 21210333-CT-C,CTT 13×T***
56861828-A-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.