McAuliffe

FTDNA: 275522, BigY2: 275522

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A353 > Z3026 > Z16250 > A114 > CTS4466/S1136 > S1115 > Z3023 > FGC84010 > A541 > Z21065 > A195

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
275522		BigY2
275522
6333323-C-T 6465282-C-T IR3_Dst ***A*
19582999-G-T 17471119-G-T P5_Prx Y***A*
19737281-C-T 17625401-C-T P5_Prx ***A*
20702930-G-A 18541044-G-A P4_Prx ***A*
2753260-C-T 2885219-C-T BY56262 YY++
6857343-C-T 6989302-C-T BY61757 YY++
7015015-C-T 7146974-C-T BY62857 YY++
7750743-A-G 7882702-A-G A10641 YY++
7750748-T-C 7882707-T-C A10642A10642 YY++
7780340-G-A 7912299-G-A BY67570 YY++
9163164-G-T 9325555-G-T Y88755 ++
13674605-G-A 11518929-G-A BY87956 ++
15551059-G-A 13439179-G-A BY60356BY43397 YY++
16645437-A-G 14533557-A-G BY109201 YY++
17223987-T-C 15112107-T-C BY113130 YY++
19315028-G-A 17203148-G-A BY128182 YY++
19315667-C-A 17203787-C-A BY128191 YY++
22461173-C-G 20299287-C-G BY220662 FGC78187 DYZ19 ++
22557430-C-T 20395544-C-T BY138989 YY++
22652755-G-T 20490869-G-T BY139772 YY++
23243868-G-A 21081982-G-A BY144010 YY++
24482919-A-T 22336772-A-T BY150293 ++
18743552-T-TTCTATCTA 16631672-T-TTCTATCTA 12×TCTA****
13674163-A-AGAATG 11518487-A-AGAATG 9×GAATG****
3720177-G-T 3852136-G-T 8×C*
25524693-C-CT 23378546-C-CT P1_gr1 33×T**
6929588-C-A 7061547-C-A ****
21775154-C-A 19613268-C-A **
7363891-G-A 7495850-G-A S3796 CTS1365 ****
2685623-C-T 2817582-C-T M5575 **
3550573-TC-T 3682532-TC-T **
8058468-G-T 8190427-G-T **
13222432-A-G 11066756-A-G **
13222436-A-G 11066760-A-G **
15566815-AG-A 13454935-AG-A **
17999518-G-C 15887638-G-C P7_Gap **
20587808-AAT-A 18425922-AAT-A P5_Dst 10×AT**
7576085-C-T 7708044-C-T Z37672 **
22018147-G-A 19856261-G-A **
24376305-G-A 22230158-G-A **
4389402-G-C 4521361-G-C **
24013790-G-T 21867643-G-T **
17547690-C-A 15435810-C-A **
22252530-T-G 20090644-T-G BY43693 DYZ19 **
22252531-T-G 20090645-T-G BY43694 DYZ19 **
22446106-A-G 20284220-A-G DYZ19 **
10872395-C-A **
10965458-T-C **
16562755-C-A 14450875-C-A **
11025476-C-T **
11025478-C-T **
11025486-T-A **
11025498-C-G **
11025499-C-A **
11025523-C-T **
10892557-C-CT **
10892558-CA-C **
10663393-T-TCCAC **
10663396-T-TATCCTA **
10663409-C-T **
10663426-A-AATCAATT **
10663427-CCT-C **
10663435-C-T **
14517398-A-AAT 12405599-A-AAT **
10796896-C-G **
7633119-C-A 7765078-C-A **
14574581-C-A 12462781-C-A **
22333451-T-A 20171565-T-A DYZ19 **
10922321-C-T **
13441576-TATA-T 11285900-TATA-T 5×ATA**
11006331-G-T **
10894208-C-A **
18758950-CTTT-C 16647070-CTTT-C 13×T**
24904708-C-T 22758561-C-T g1 **
3158868-C-A 3290827-C-A **
10961461-CT-C **
18127659-C-A 16015779-C-A **
10940955-T-C **
11030102-T-G **
16968150-C-CA 14856270-C-CA 26×A**
10973752-C-A **
13898754-GTTTTTT-G 11778048-GTTTTTT-G 26×T**
17215912-C-A 15104032-C-A **
10686931-G-T **
7209168-C-A 7341127-C-A **
10924392-TATTCC-T **
17871842-C-A 15759962-C-A **
11659840-C-A **
22517130-C-A 20355244-C-A **
21324245-G-T 19162359-G-T **
10847434-A-T **
10940948-T-C **
15239769-C-A 13127855-C-A **
14959728-G-T 12847803-G-T **
10801506-C-A **
10801524-C-A **
10804405-A-T **
10804422-C-T **
14431452-C-A 12310725-C-A **
22127975-CTTTTTT-C 19966089-CTTTTTT-C 20×T**
14764914-ATTTTT-A 12652983-ATTTTT-A 23×T**
17903507-C-A 15791627-C-A **
10804423-T-C **
5204571-T-A 5336530-T-A **
22580068-CTTTTT-C 20418182-CTTTTT-C 19×T**
10950882-A-T **
19720746-A-C 17608866-A-C P5_Prx **
18201026-G-T 16089146-G-T **
24378717-C-A 22232570-C-A **
7270305-A-C 7402264-A-C **
23191985-CT-C 21030099-CT-C **
11025543-T-TC **
19509774-C-A 17397894-C-A **
15336507-A-G 13224625-A-G **
11004606-C-A **
21677357-C-A 19515471-C-A **
23204991-C-A 21043105-C-A **
18201015-A-G 16089135-A-G **
15579460-T-C 13467580-T-C **
10950872-A-T **
13614309-C-A 11458633-C-A **
11030071-C-T **
11030096-G-A **
7196336-C-A 7328295-C-A **
6454463-C-A 6586422-C-A **
10940986-T-C **
56841755-C-A **
10961456-CA-C **
21954469-C-A 19792583-C-A **
5393564-C-A 5525523-C-A **
22164547-CAAAAAAA-C 20002661-CAAAAAAA-C 19×A**
56858398-A-AG **
17491966-A-G 15380086-A-G **
9440232-C-A 9602623-C-A **
16786234-TTC-T 14674354-TTC-T **
19356297-C-A 17244417-C-A **
13593762-C-A 11438086-C-A **
10993130-A-T **
7670705-C-A 7802664-C-A **
7184912-C-A 7316871-C-A **
4208948-C-A 4340907-C-A **
56858004-G-T **
9034571-C-A 9196962-C-A **
14279105-G-T 12158399-G-T **
2682894-C-A 2814853-C-A **
4900770-G-T 5032729-G-T **
16931923-C-A 14820043-C-A **
21238232-C-A 19076346-C-A **
6765950-T-C 6897909-T-C **
4957097-C-A 5089056-C-A **
2685619-A-T 2817578-A-T **
6786911-ATTTTT-A 6918870-ATTTTT-A 17×T**
16481115-C-A 14369235-C-A **
14688640-C-A 12576706-C-A **
15619107-C-A 13507227-C-A **
21412261-CTTT-C 19250375-CTTT-C 36×T**
9928269-C-A 10090660-C-A **
6752078-C-A 6884037-C-A **
10659092-G-T **
9952177-C-A 10114568-C-A **
13937390-C-A 11816684-C-A **
10686925-T-C **
15995196-C-A 13883316-C-A **
28558631-C-A 26412484-C-A **
16180208-C-A 14068328-C-A **
14977312-G-T 12865387-G-T **
10991194-C-A **
10804438-C-CCACCA **
10804466-T-A **
10804473-C-A **
15424639-GAA-G 13312759-GAA-G 10×A**
15380169-G-T 13268289-G-T **
14786324-C-A 12674394-C-A **
10790054-G-T **
10948466-C-A **
5267080-C-A 5399039-C-A **
56843415-C-A **
14339377-C-A 12218672-C-A **
8848377-C-A 8980336-C-A **
14118245-GTT-G 11997539-GTT-G 13×T**
6654429-C-A 6786388-C-A **
3131697-AT-A 3263656-AT-A 8×T**
13896274-C-A 11775568-C-A **
10940979-T-C **
11027003-C-A **
11644348-A-G **
3640578-T-C 3772537-T-C **
11025563-C-A **
24530900-T-TAC 22384753-T-TAC P3_t2 **
13893594-C-A 11772888-C-A **
21392424-C-A 19230538-C-A **
17284623-C-A 15172743-C-A FT423099 **
13319195-C-CG 11163519-C-CG **
15424727-G-T 13312847-G-T **
21115852-G-A 18953966-G-A **
10941010-G-C **
14554426-C-A 12442627-C-A **
28532591-G-A 26386444-G-A FT108510 **
13597198-C-A 11441522-C-A **
28760194-C-A 26614047-C-A **
8901000-C-A 9032959-C-A **
10972159-C-A **
3374309-G-T 3506268-G-T **
56858376-GGAAAGA-G **
23475786-C-G 21313900-C-G **
10949378-C-A **
14959769-G-A 12847844-G-A **
17981966-C-A 15870086-C-A Y100867 **
2852679-C-A 2984638-C-A **
10792506-G-T **
3854148-C-A 3986107-C-A **
14959717-G-A 12847792-G-A **
3271445-CTT-C 3403404-CTT-C 10×T**
16478214-AG-A 14366334-AG-A **
9830545-T-C 9992936-T-C **
10767846-C-CATTAT **
10767850-C-G **
10767852-A-G **
10767870-C-A **
18928570-CAAAAA-C 16816690-CAAAAA-C 28×A**
10941017-T-A **
6826850-C-A 6958809-C-A **
19246941-C-A 17135061-C-A **
27423562-T-A 25277415-T-A P1_g3 **
21585840-C-T 19423954-C-T **
10006015-C-A 10168406-C-A **
14538021-TAA-T 12426222-TAA-T 11×A**
21861445-C-A 19699559-C-A **
14279824-C-A 12159118-C-A **
17901022-A-G 15789142-A-G **
18780450-C-A 16668570-C-A **
2980300-C-A 3112259-C-A **
10657100-C-A **
14611699-C-A 12499905-C-A **
3396402-C-A 3528361-C-A **
27952091-GTATATATATATATATA-G 25805944-GTATATATATATATATA-G P1_Y2 19×TA**
10940983-C-T **
28765400-C-A 26619253-C-A **
14538703-C-A 12426904-C-A **
10688193-T-C **
17491975-ATCTCCC-T 15380095-ATCTCCC-T **
10895931-C-A **
27423579-G-A 25277432-G-A P1_g3 **
6881286-C-A 7013245-C-A **
15157349-C-A 13045436-C-A **
26435086-C-A 24288939-C-A P1_Y1 **
17779380-C-G 15667500-C-G **
16364103-T-C 14252223-T-C **
17685732-C-A 15573852-C-A **
14422671-C-A 12301946-C-A **
11018096-G-A **
23126949-C-A 20965063-C-A **
10767640-C-A **
19899637-G-A 17787757-G-A BY212009 P5_Prx **
14029143-C-A 11908437-C-A **
28609518-C-A 26463371-C-A FT141401 **
17480164-C-A 15368284-C-A **
14614667-C-A 12502865-C-A **
2947911-C-A 3079870-C-A **
2856616-C-A 2988575-C-A **
10972061-G-T **
10972069-C-G **
16246292-C-A 14134412-C-A **
10772106-C-A **
4925262-C-A 5057221-C-A **
6096227-C-A 6228186-C-A **
22340067-C-A 20178181-C-A DYZ19 **
2665752-C-A 2797711-C-A **
2682867-C-A 2814826-C-A **
2773918-T-A 2905877-T-A **
3059991-C-A 3191950-C-A **
3079603-C-A 3211562-C-A **
3080230-C-A 3212189-C-A **
3341634-C-A 3473593-C-A **
3413770-G-T 3545729-G-T **
3640507-C-A 3772466-C-A **
3809588-T-G 3941547-T-G **
3829272-C-A 3961231-C-A **
4049996-A-G 4181955-A-G **
4077445-A-T 4209404-A-T **
4120272-T-C 4252231-T-C **
4124090-C-A 4256049-C-A **
4292835-T-TAA 4424794-T-TAA 13×A**
4438934-G-A 4570893-G-A **
4537679-C-A 4669638-C-A **
4698619-A-C 4830578-A-C **
4703785-A-T 4835744-A-T **
4734174-C-A 4866133-C-A **
4862680-C-G 4994639-C-G **
4930416-A-C 5062375-A-C **
4930475-T-A 5062434-T-A **
4948978-C-A 5080937-C-A **
4960191-T-A 5092150-T-A **
4964639-A-G 5096598-A-G **
4996123-A-C 5128082-A-C **
4996133-C-T 5128092-C-T **
5022394-T-C 5154353-T-C **
5054940-A-G 5186899-A-G **
5054948-C-T 5186907-C-T **
5071038-C-A 5202997-C-A **
5207726-G-T 5339685-G-T **
5209494-G-A 5341453-G-A **
5213983-C-A 5345942-C-A **
5426457-C-A 5558416-C-A **
5497848-G-T 5629807-G-T **
5523853-C-T 5655812-C-T FTA4299 **
5534801-C-A 5666760-C-A **
5667247-G-T 5799206-G-T **
5761529-A-T 5893488-A-T **
5824653-C-A 5956612-C-A **
5842040-C-A 5973999-C-A **
5853499-T-C 5985458-T-C **
6085339-A-T 6217298-A-T **
6092030-C-A 6223989-C-A **
6146682-C-A 6278641-C-A IR3_Dst **
6646205-T-C 6778164-T-C **
6765908-C-A 6897867-C-A **
6765940-C-T 6897899-C-T **
6830815-C-A 6962774-C-A **
6833233-C-A 6965192-C-A **
6892054-T-C 7024013-T-C **
7162196-C-A 7294155-C-A **
7237893-A-T 7369852-A-T **
7299821-T-C 7431780-T-C **
7304711-T-C 7436670-T-C **
7309973-C-A 7441932-C-A **
7313512-C-A 7445471-C-A **
7313670-C-A 7445629-C-A **
7320230-C-A 7452189-C-A **
7342642-G-C 7474601-G-C **
7363308-C-A 7495267-C-A **
7433692-C-A 7565651-C-A **
7446000-G-GAAGA 7577959-G-GAAGA **
7576114-A-T 7708073-A-T **
7576115-C-CAGT 7708074-C-CAGT **
7576117-C-T 7708076-C-T **
7576128-T-C 7708087-T-C **
7576144-G-T 7708103-G-T **
7613866-G-A 7745825-G-A **
7935747-C-T 8067706-C-T **
8056176-C-A 8188135-C-A **
8058482-C-T 8190441-C-T **
8102542-A-G 8234501-A-G **
8230364-C-A 8362323-C-A **
8293737-A-C 8425696-A-C **
8668475-C-A 8800434-C-A **
8678037-CA-C 8809996-CA-C **
8691996-C-A 8823955-C-A **
8720519-C-A 8852478-C-A **
8736900-A-C 8868859-A-C **
8822400-CA-C 8954359-CA-C **
8912995-C-A 9044954-C-A **
9013054-A-G 9175445-A-G **
9013222-C-T 9175613-C-T **
9088954-C-T 9251345-C-T **
9325893-G-A 9488284-G-A **
9325899-G-A 9488290-G-A **
9325901-C-A 9488292-C-A **
9502539-G-T 9664930-G-T **
9509883-G-A 9672274-G-A **
9576881-A-T 9739272-A-T IR3_Prx **
9820554-C-A 9982945-C-A **
9931489-T-C 10093880-T-C **
9937811-A-G 10100202-A-G **
9955501-A-T 10117892-A-T **
9957885-A-G 10120276-A-G **
9957886-G-T 10120277-G-T **
9964342-A-G 10126733-A-G **
9965211-C-A 10127602-C-A **
9996147-G-C 10158538-G-C **
10011702-C-A 10174093-C-A **
10054109-CT-C 10216500-CT-C **
10056974-G-T 10219365-G-T **
10627888-C-G **
10661542-TCTACTCC-T **
10687052-G-A **
10693793-C-A **
10792135-C-G **
10792967-T-A **
10793524-C-A **
10793953-C-A **
10805449-C-T **
10830824-G-T **
10837141-A-T **
10837147-T-G **
10837162-C-T **
10837172-A-T **
10838023-C-T **
10841535-T-C **
10842206-C-T **
10847439-T-A **
10849470-G-C **
10879616-C-A **
10894459-T-A **
10905243-C-A **
10908025-C-A **
10913920-G-T **
10918045-T-G **
10918054-T-C FT436495 **
10925612-T-A **
10935190-C-T **
10940963-T-C **
10940964-G-C **
10940988-C-T **
10940998-C-T **
10941008-A-T **
10941013-T-C FT437480 **
10947019-C-A **
10972075-T-A **
10972086-G-A **
10973864-C-G **
10975285-C-A **
10975954-T-C **
10976897-C-A **
10977240-C-A **
10995238-C-A **
11006884-A-T **
11021130-T-C **
13198590-C-A 11042914-C-A FT270963 **
13205327-A-T 11049651-A-T **
13235700-G-A 11080024-G-A FT441564 **
13258405-T-C 11102729-T-C **
13271675-G-T 11115999-G-T **
13319172-A-AT 11163496-A-AT **
13319206-A-G 11163530-A-G **
13319211-G-A 11163535-G-A **
13319218-C-A 11163542-C-A **
13361606-T-C 11205930-T-C **
13486733-A-C 11331057-A-C **
13496818-G-T 11341142-G-T **
13504027-A-T 11348351-A-T **
13505236-C-A 11349560-C-A **
13522615-G-A 11366939-G-A **
13597227-C-A 11441551-C-A **
13745315-G-C 11589639-G-C **
11644345-T-A **
11644352-A-G FT449760 **
11644364-A-G **
11648473-T-G **
11651407-G-T **
11664835-C-T FTB21025 **
11666785-C-A **
11672681-C-A **
13874087-G-T 11753381-G-T **
13893287-C-A 11772581-C-A **
13899227-C-A 11778521-C-A **
13921041-C-T 11800335-C-T **
13940341-C-A 11819635-C-A **
13946134-A-T 11825428-A-T **
13963012-C-A 11842306-C-A **
13963022-T-A 11842316-T-A **
13995769-T-C 11875063-T-C **
14086142-G-C 11965436-G-C **
14086152-G-A 11965446-G-A BY32576FT46237 **
14114861-T-C 11994155-T-C **
14135962-C-A 12015256-C-A **
14184256-A-G 12063550-A-G **
14204895-T-A 12084189-T-A **
14226483-C-A 12105777-C-A **
14269889-T-A 12149183-T-A **
14279052-G-T 12158346-G-T **
14425311-G-T 12304586-G-T **
14432279-T-C 12311552-T-C **
14456183-TA-T 12335456-TA-T **
14456277-T-A 12335550-T-A **
14456283-A-ACT 12335556-A-ACT **
14456290-C-G 12335563-C-G **
14490875-C-A 12370144-C-A **
14560676-C-A 12448877-C-A **
14566351-C-A 12454551-C-A **
14567643-C-A 12455843-C-A **
14578384-G-T 12466584-G-T BY48427 4×TTTGT**
14737276-TC-T 12625344-TC-T **
14795680-C-T 12683751-C-T FT216481 **
14799860-C-G 12687931-C-G **
14807455-A-G 12695526-A-G **
14959662-T-C 12847737-T-C **
14959674-C-T 12847749-C-T **
14959678-C-T 12847753-C-T **
14959680-C-G 12847755-C-G **
14959689-G-T 12847764-G-T **
14959692-A-G 12847767-A-G **
14959713-G-C 12847788-G-C **
14959722-G-A 12847797-G-A **
14959727-T-C 12847802-T-C **
14959731-C-T 12847806-C-T **
14959736-A-C 12847811-A-C **
14959750-T-G 12847825-T-G **
14959795-C-T 12847870-C-T **
15070441-C-A 12958532-C-A **
15073358-C-A 12961448-C-A **
15115295-C-T 13003382-C-T **
15119413-A-G 13007500-A-G **
15126961-C-A 13015048-C-A **
15219240-C-A 13107326-C-A **
15239694-T-A 13127780-T-A **
15242651-A-C 13130737-A-C **
15333611-C-A 13221729-C-A **
15336503-G-A 13224621-G-A **
15336510-A-G 13224628-A-G **
15365396-C-A 13253516-C-A **
15402658-T-C 13290778-T-C **
15424818-A-G 13312938-A-G **
15431854-T-C 13319974-T-C **
15533036-A-G 13421156-A-G **
15647876-C-T 13535996-C-T **
15727871-T-C 13615991-T-C **
15770512-T-C 13658632-T-C **
15871686-C-A 13759806-C-A Y31654 **
15921301-C-A 13809421-C-A **
15923991-C-A 13812111-C-A **
15943997-T-C 13832117-T-C **
15946658-T-C 13834778-T-C **
15952720-G-T 13840840-G-T **
15971318-T-C 13859438-T-C **
15982094-T-A 13870214-T-A **
16005503-A-C 13893623-A-C **
16092811-A-C 13980931-A-C **
16096158-TA-T 13984278-TA-T **
16119322-A-G 14007442-A-G P8_Prx **
16119332-T-G 14007452-T-G P8_Prx **
16177023-G-T 14065143-G-T **
16177033-A-T 14065153-A-T **
16305924-CAAAAAAAAAA-C 14194044-CAAAAAAAAAA-C 24×A**
16353976-C-A 14242096-C-A **
16383371-G-A 14271491-G-A **
16405402-C-G 14293522-C-G **
16445668-C-A 14333788-C-A **
16648211-C-T 14536331-C-T **
16667963-G-T 14556083-G-T **
16676886-C-A 14565006-C-A **
16689803-C-A 14577923-C-A **
16930749-A-G 14818869-A-G **
17006459-T-G 14894579-T-G **
17029347-C-A 14917467-C-A **
17088852-C-A 14976972-C-A **
17333983-G-A 15222103-G-A **
17440705-T-A 15328825-T-A **
17492315-A-G 15380435-A-G **
17588718-A-T 15476838-A-T **
17588803-C-A 15476923-C-A **
17779399-T-G 15667519-T-G **
17779607-C-A 15667727-C-A **
17859873-G-T 15747993-G-T **
17864903-C-A 15753023-C-A **
17903502-T-C 15791622-T-C **
17929731-G-T 15817851-G-T **
17950827-T-C 15838947-T-C **
18153501-C-A 16041621-C-A **
18174795-C-T 16062915-C-T **
18191343-C-A 16079463-C-A **
18192538-C-A 16080658-C-A **
18280458-A-G 16168578-A-G P6_Prx **
18280468-T-G 16168588-T-G P6_Prx **
18280980-T-G 16169100-T-G P6_Prx **
18463116-GTATGTATGTA-G 16351236-GTATGTATGTA-G P6_Dst **
18564428-T-A 16452548-T-A **
18622658-A-G 16510778-A-G **
18627686-T-C 16515806-T-C **
18687529-GGGA-G 16575649-GGGA-G **
18736575-T-A 16624695-T-A **
18750001-T-C 16638121-T-C **
18767652-C-A 16655772-C-A **
18814844-C-A 16702964-C-A **
18849359-G-A 16737479-G-A **
18869140-T-C 16757260-T-C **
18937446-CA-C 16825566-CA-C **
19056242-T-G 16944362-T-G **
19155235-A-G 17043355-A-G **
19300733-C-G 17188853-C-G **
19301544-G-T 17189664-G-T **
19418450-C-A 17306570-C-A **
19425802-G-C 17313922-G-C **
19429490-T-A 17317610-T-A **
19429492-T-C 17317612-T-C **
19459342-A-G 17347462-A-G **
19509844-C-A 17397964-C-A **
19721225-G-T 17609345-G-T P5_Prx **
19891349-C-T 17779469-C-T P5_Prx **
19899623-A-G 17787743-A-G P5_Prx **
19899626-A-AG 17787746-A-AG P5_Prx **
19899629-G-A 17787749-G-A P5_Prx **
19899639-A-AG 17787759-A-AG P5_Prx **
19899656-G-A 17787776-G-A P5_Prx **
19930318-A-T 17818438-A-T P5_Prx **
19998855-A-AG 17886975-A-AG P5_Prx **
20045569-TC-T 17933689-TC-T P5_Prx **
20621421-A-T 18459535-A-T P4_Prx **
20621431-A-T 18459545-A-T P4_Prx **
20629843-A-C 18467957-A-C P4_Prx **
20629886-C-G 18468000-C-G P4_Prx **
20640374-G-C 18478488-G-C P4_Prx **
20927099-G-A 18765213-G-A P4_Dst 35×T**
21073234-A-C 18911348-A-C **
21166792-C-A 19004906-C-A **
21166818-A-G 19004932-A-G **
21247551-G-A 19085665-G-A **
21268904-C-A 19107018-C-A **
21409684-T-G 19247798-T-G **
21444514-C-CA 19282628-C-CA **
21583174-G-T 19421288-G-T **
21677362-C-T 19515476-C-T **
21802821-A-T 19640935-A-T **
21836342-T-C 19674456-T-C **
22002351-G-A 19840465-G-A FTB15478 **
22012047-C-A 19850161-C-A **
22076280-C-G 19914394-C-G **
22155484-C-A 19993598-C-A **
22171145-G-T 20009259-G-T **
22214665-G-T 20052779-G-T **
22252515-GAG-C 20090629-GAG-C DYZ19 **
22252522-T-C 20090636-T-C DYZ19 **
22590749-T-A 20428863-T-A **
22619919-G-T 20458033-G-T **
22880649-C-A 20718763-C-A **
22965338-T-C 20803452-T-C **
23018701-C-A 20856815-C-A **
23036070-A-T 20874184-A-T **
23065584-C-A 20903698-C-A **
23128684-A-C 20966798-A-C **
23128694-G-A 20966808-G-A **
23202255-G-T 21040369-G-T **
23544996-C-T 21383110-C-T **
23777760-CTGGATTA-C 21615874-CTGGATTA-C **
23997640-C-T 21851493-C-T **
24291435-C-A 22145288-C-A P3_t1 **
24363982-G-T 22217835-G-T **
24518154-A-T 22372007-A-T **
24595273-G-A 22449126-G-A P3_t2 **
24764033-C-A 22617886-C-A A3525 P3_b2 **
25915801-T-G 23769654-T-G P1_Y1 **
25915811-C-T 23769664-C-T P1_Y1 **
25931702-C-A 23785555-C-A P1_Y1 **
26055608-T-C 23909461-T-C P1_Y1 **
26314682-G-A 24168535-G-A P1_Y1 **
27878469-G-C 25732322-G-C P1_Y2 **
28229031-G-T 26082884-G-T P1_b4 **
28465186-C-A 26319039-C-A **
28537187-C-A 26391040-C-A **
28542338-T-G 26396191-T-G **
28542352-G-A 26396205-G-A **
28545101-A-G 26398954-A-G **
28547447-C-A 26401300-C-A **
28560148-T-G 26414001-T-G **
28609486-A-T 26463339-A-T **
28609497-G-C 26463350-G-C **
28609498-G-A 26463351-G-A **
28656810-C-A 26510663-C-A **
28707465-C-A 26561318-C-A **
28715012-T-A 26568865-T-A FT240919 **
28715025-A-G 26568878-A-G **
28715031-A-T 26568884-A-T **
28742330-T-C 26596183-T-C **
28780031-C-A 26633884-C-A **
56714075-TG-T **
56822601-C-G **
56841760-C-T **
56845245-G-T **
14875592-G-GT 12763662-G-GT 28×T***
13860363-TA-T 11739657-TA-T ***
13854113-A-G 11733407-A-G ***
13854122-G-A 11733416-G-A Y21810 ***
10019453-AAGG-A,AGAGA 10181844-AAGG-A,AGAGA ***
13799169-T-TGGAATGGAAC 11678463-T-TGGAATGGAAC ***
10020955-G-A 10183346-G-A ***
13447309-T-C 11291633-T-C A2171 ***
13921398-C-T 11800692-C-T ***
13921372-C-T 11800666-C-T ***
13858733-T-G 11738027-T-G ***
22435718-G-T 20273832-G-T A5774 DYZ19 ***
13853811-A-T 11733105-A-T ***
13195503-T-C 11039827-T-C BY84237 ***
10031347-C-T 10193738-C-T ***
10031349-A-G 10193740-A-G ***
10031352-G-C 10193743-G-C ***
10031354-A-G 10193745-A-G ***
13140120-AACTCGC-A,AACTCC 10629606-AACTCGC-A,AACTCC ***
13141245-A-G 10630731-A-G ***
13820888-G-A 11700182-G-A ***
24813945-C-T 22667798-C-T P3_b2 ***
28788929-C-A 26642782-C-A Y31972 FGC63362 ***
28788940-T-G 26642793-T-G ***
28788943-A-T 26642796-A-T ***
28788946-G-A 26642799-G-A ***
58981639-C-CA,CCTCCA 56835492-C-CA,CCTCCA ***
58982793-C-T 56836646-C-T ***
10652918-G-GCCATT ***
18144168-CA-C 16032288-CA-C 9×A***
10954359-T-TGCTTG ***
13487840-G-T 11332164-G-T ***
10677484-CGAATTCCATTCCACT-C ***
10934869-A-T ***
10987222-C-CGTTTG,T ***
2651903-G-GT 2783862-G-GT ***
13463875-C-A 11308199-C-A ***
10884667-C-A ***
10899207-C-A ***
10799640-C-T ***
2810366-ATTT-A,AT 2942325-ATTT-A,AT 23×T***
15221639-A-G 13109725-A-G ***
23482894-CAAA-C,CAA 21321008-CAAA-C,CAA 15×A***
13478256-CGAG-C,CGTG 11322580-CGAG-C,CGTG ***
13478198-C-A 11322522-C-A ***
10662169-C-A,T ***
17500620-G-T 15388740-G-T ***
19529116-CTT-C,CT 17417236-CTT-C,CT 14×T***
7832037-C-CT 7963996-C-CT 8×T***
7011389-C-A 7143348-C-A ***
10670791-C-A ***
11017709-C-A ***
10999104-TTACAC-T ***
18915320-C-A 16803440-C-A ***
10883774-C-T ***
10778891-G-T ***
9974547-G-T 10136938-G-T ***
4862565-A-G 4994524-A-G FTA21361 ***
6773755-C-A 6905714-C-A ***
9674552-G-T 9836943-G-T IR3_Prx ***
9806790-T-A 9969181-T-A ***
10682469-A-T ***
10867217-C-A ***
10973956-TCCACTCCAC-T,TCCACTCCACT ***
11007412-C-A ***
13488962-C-A 11333286-C-A ***
13936275-G-T 11815569-G-T ***
14025562-A-AAAAG,AAAAGAAAG 11904856-A-AAAAG,AAAAGAAAG 12×AAAG***
15385730-A-G 13273850-A-G ***
16768601-CT-C,CTT 14656721-CT-C,CTT 17×T***
17459485-CAAAA-C,CAAA 15347605-CAAAA-C,CAAA 25×A***
17895175-ATTTT-A,AT 15783295-ATTTT-A,AT 21×T***
19012400-C-A 16900520-C-A ***
19187387-T-TA 17075507-T-TA ***
19187388-T-A 17075508-T-A BY127053 ***
19463575-C-A 17351695-C-A ***
19479688-AGTGTGTGT-A 17367808-AGTGTGTGT-A 20×GT***
21773962-C-A 19612076-C-A ***
21912029-G-A 19750143-G-A ***
22170322-G-A 20008436-G-A ***
22251795-C-A 20089909-C-A DYZ19 ***
23848021-G-C 21686135-G-C FGC1474 Y8687 ***
28614400-A-G 26468253-A-G ***
56835446-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.