Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A353 > Z3026 > Z16250 > A114 > CTS4466/S1136 > S1115 > Z3023 > FGC84010 > A541 > Z21065 > A195 > A761 > Z16254 > A154 > A153 > LLB17142

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
18892206-T-TTTTTA 16780326-T-TTTTTA 14×TTTTA+
8367591-G-A 8499550-G-A BY42763 YY+
9398466-CAA-C 9560857-CAA-C +
15715565-C-T 13603685-C-T BY103537 YY+
17664159-G-T 15552279-G-T BY116474 YY+
17973661-G-A 15861781-G-A BY118846 Y+
19349160-G-A 17237280-G-A BY128412 YY+
13858727-ATCGAC-A 11738021-ATCGAC-A **
13143790-CACATCACTCT-C 10633276-CACATCACTCT-C **
13801029-G-A 11680323-G-A **
13801036-A-G 11680330-A-G **
13858788-T-G 11738082-T-G **
28132475-C-CT 25986328-C-CT P1_b4 15×T**
13455728-C-T 11300052-C-T ***
13823189-A-G 11702483-A-G ***
2763772-C-A 2895731-C-A ***
13485843-T-C,G 11330167-T-C,G ***
13838951-T-A 11718245-T-A ***
13846535-G-A 11725829-G-A ***
22435481-A-C 20273595-A-C A4236 DYZ19 ***
13839740-C-G 11719034-C-G FT121662 ***
18982605-AGG-A 16870725-AGG-A ***
25858419-G-A 23712272-G-A P1_Y1 ***
26079070-GT-G 23932923-GT-G P1_Y1 13×T***
58973995-C-T 56827848-C-T ***
25201069-A-G 23054922-A-G g1 ***
13827488-A-G 11706782-A-G BY90770 ***
13659406-G-T 11503730-G-T ***
13455782-T-G 11300106-T-G ***
13859979-G-T 11739273-G-T ***
22276072-T-G 20114186-T-G DYZ19 ***
24302815-AC-A 22156668-AC-A P3_t1 ***
58855278-C-G 56735593-G-C ***
22362305-C-A 20200419-C-A DYZ19 ***
13846221-G-GA 11725515-G-GA ***
13867485-T-C 11746779-T-C ***
16715034-GGT-G 14603154-GGT-G 10×GT***
16406853-A-T 14294973-A-T FT79412 20×T***
58974007-A-G 56827860-A-G ***
58974036-C-A 56827889-C-A ***
13866449-C-G 11745743-C-G ***
13648118-G-A 11492442-G-A ***
13676476-A-C 11520800-A-C BY88042 ***
13860072-A-G 11739366-A-G ***
13853362-T-G 11732656-T-G ***
58975639-T-G 56829492-T-G ***
6247985-AAC-A 6379944-AAC-A IR3_Dst ***
6267716-G-A 6399675-G-A IR3_Dst ***
10017766-T-C 10180157-T-C ***
10017768-T-C 10180159-T-C ***
10017772-T-C 10180163-T-C ***
10017774-C-T 10180165-C-T ***
10019463-G-A 10181854-G-A ***
13141429-C-G 10630915-C-G ***
13446848-T-C 11291172-T-C ***
13453805-G-GT 11298129-G-GT ***
13459105-C-CCCCTG 11303429-C-CCCCTG ***
13459596-ATTTCT-A 11303920-ATTTCT-A ***
13463749-A-T 11308073-A-T ***
13478861-C-A 11323185-C-A ***
13493849-T-TTGTTA 11338173-T-TTGTTA ***
13572737-C-A 11417061-C-A ***
13682042-G-C 11526366-G-C ***
13682043-G-A 11526367-G-A ***
13693444-G-C 11537768-G-C ***
13705313-A-T 11549637-A-T ***
13801020-A-T 11680314-A-T ***
13802806-T-C 11682100-T-C ***
13802813-C-G 11682107-C-G ***
13802827-A-G 11682121-A-G ***
13802836-T-A 11682130-T-A BY48805 ***
13802837-G-T 11682131-G-T BY90020 ***
13802838-C-G 11682132-C-G ***
13802863-G-C 11682157-G-C ***
13808934-GGAATT-G,GGAATG 11688228-GGAATT-G,GGAATG ***
13809738-T-G 11689032-T-G ***
13812811-G-C 11692105-G-C ***
13823163-GCATCC-G 11702457-GCATCC-G ***
13823170-T-A 11702464-T-A ***
13827525-AGTCAG-A 11706819-AGTCAG-A ***
13832600-C-A 11711894-C-A ***
13832796-G-T 11712090-G-T ***
13832804-T-A 11712098-T-A ***
13832807-G-A 11712101-G-A ***
13832809-C-T 11712103-C-T ***
13839791-G-A 11719085-G-A ***
13848301-C-T 11727595-C-T ***
13858755-G-A 11738049-G-A ***
13860379-G-A 11739673-G-A ***
13862088-A-G 11741382-A-G ***
13862131-G-T 11741425-G-T ***
13865828-T-A 11745122-T-A ***
13866442-T-TCAGAATCAAA 11745736-T-TCAGAATCAAA ***
13866448-T-C 11745742-T-C ***
13866459-G-A 11745753-G-A FTB32343 ***
13867483-C-T 11746777-C-T ***
13868234-T-C 11747528-T-C ***
15358761-G-A,GA 13246880-G-A 26×A***
15750496-C-T 13638616-C-T ***
16118570-A-AT,T 14006690-A-AT,T P8_Prx 31×T***
17348297-C-A 15236417-C-A 17×A***
18738107-TC-T 16626227-TC-T ***
19785343-C-CA 17673463-C-CA P5_Prx 26×A***
19966696-A-G 17854816-A-G P5_Prx ***
19966697-G-A 17854817-G-A P5_Prx ***
20231524-A-G 18069638-A-G P5_Dst ***
20771714-G-A 18609828-G-A P4_Prx 25×A***
21023264-G-T 18861378-G-T P4_Dst ***
21454204-C-A 19292318-C-A 18×A***
22261352-A-T 20099466-A-T DYZ19 ***
22263908-T-C 20102022-T-C DYZ19 ***
22335008-G-C 20173122-G-C DYZ19 ***
22436555-G-T 20274669-G-T DYZ19 ***
22512088-G-C 20350202-G-C DYZ19 ***
24175105-AT-A 22028958-AT-A P3_b1 ***
24302814-G-A 22156667-G-A P3_t1 ***
25201050-A-AG 23054903-A-AG g1 ***
25333846-C-T 23187699-C-T P2_r1 ***
25376536-CTT-C 23230389-CTT-C P2_r2 24×T***
25487381-AAG-A 23341234-AAG-A P2_r2 ***
25524692-TC-T 23378545-TC-T P1_gr1 ***
26089060-T-A 23942913-T-A P1_Y1 ***
26101362-C-A 23955215-C-A P1_Y1 17×A***
26411961-TA-T 24265814-TA-T P1_Y1 13×A***
26915564-CA-C 24769417-CA-C P1_r3 10×A***
27161914-CAAA-C 25015767-CAAA-C P1_g3 32×A***
27637198-T-TCACA 25491051-T-TCACA P1_Y2 17×CA***
27791905-T-G 25645758-T-G P1_Y2 ***
28120568-G-GTT 25974421-G-GTT P1_b4 20×T***
58855328-C-G 56735543-G-C ***
58855332-G-T 56735539-C-A 4×CATTC***
58973965-A-T 56827818-A-T ***
58974091-C-G 56827944-C-G ***
59007959-C-CAAA 56861812-C-CAAA 26×A***
13453081-A-C,T 11297405-A-C,T ***
10016099-CGTC-C,TTCT 10178490-CGTC-C,TTCT ***
13867987-AATG-A 11747281-AATG-A ***
13705312-GATGA-G 11549636-GATGA-G ***
27791911-T-TCTTCTG 25645764-T-TCTTCTG P1_Y2 ***
13865743-G-A,T 11745037-G-A,T ***
13865754-C-A,G 11745048-C-A,G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.