Nilsson

FTDNA: 384048, BigY2: 384048
MDKA Birth: Sweden

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > BY95901

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
384048		BigY2
384048		Manual
Edits
20700700-C-G 18538814-C-G P4_Prx ***A*
6236172-C-T 6368131-C-T IR3_Dst ***A*
19867171-C-T 17755291-C-T P5_Prx ***A*
20649632-A-G 18487746-A-G P4_Prx ***A*
26159246-T-A 24013099-T-A P1_Y1 ***A*
20673805-G-T 18511919-G-T P4_Prx A*
18303160-A-G 16191280-A-G P6_Prx A*
18360904-G-A 16249024-G-A P6_Prx A*
7627358-A-G 7759317-A-G FGC23736FGC23737 YY++
6779270-G-T 6911229-G-T BY61243 YY++
6894345-C-G 7026304-C-G BY62026 YY++
8358365-T-A 8490324-T-A BY71959 YY++
8584097-G-A 8716056-G-A BY74249 YY++
9147759-G-A 9310150-G-A BY78542 Y++
14170847-G-T 12050141-G-T BY93507 YY**+
14903269-A-T 12791336-A-T BY98373 YY++
14977989-C-A 12866065-C-A BY98867 YY++
16610252-A-T 14498372-A-T BY108973 YY++
16639984-G-C 14528104-G-C BY109164 YY++
16841316-T-C 14729436-T-C BY110512 YY++
17147291-T-G 15035411-T-G BY112654 YY++
17295425-A-T 15183545-A-T BY113582 YY++
17309865-C-A 15197985-C-A BY113710 YY++
17515762-T-C 15403882-T-C BY115394 YY++
17555129-C-A 15443249-C-A BY115677 YY++
17767644-A-T 15655764-A-T BY117279 YY++
17774693-A-G 15662813-A-G Y72320 YY++
17887690-G-A 15775810-G-A BY118123 YY++
18115660-T-A 16003780-T-A BY120187 YY++
21232623-T-C 19070737-T-C BY131300 YY++
21978124-C-T 19816238-C-T BY136789 YY++
22440904-CA-C 20279018-CA-C DYZ19 ++
23139591-T-C 20977705-T-C BY143293 YY++
23635916-T-G 21474030-T-G BY146923 YY++
25027396-C-A 22881249-C-A g1 +
23068070-CCTT-C 20906184-CCTT-C +
3546266-G-A 3678225-G-A BY57718 ****
22254200-G-C 20092314-G-C DYZ19 ****
22345035-C-G 20183149-C-G FT455870 DYZ19 ****
22447265-C-A 20285379-C-A DYZ19 ****
18711510-A-G 16599630-A-G ****
13858249-C-A 11737543-C-A DYZ17 ****
14191861-GT-G 12071155-GT-G 8×T****
14409002-TC-T 12288300-TC-T **
14570752-G-A 12458952-G-A FT157077 **
17071190-C-A 14959310-C-A FT290969 6×GAAA**
19187413-TGCAC-T 17075533-TGCAC-T **
21132680-TG-T 18970794-TG-T **
26495662-G-A 24349515-G-A P1_Y1 **
7723829-G-A 7855788-G-A 12×AAGAA**
8078394-G-T 8210353-G-T **
15364001-A-G 13252121-A-G **
18738808-CATAT-C 16626928-CATAT-C 9×AT**
28754986-C-A 26608839-C-A **
2866480-C-A 2998439-C-A **
26922154-G-C 24776007-G-C P1_r3 **
9700821-G-A 9863212-G-A IR3_Prx **
15431997-C-A 13320117-C-A FGC26467 **
18619061-C-A 16507181-C-A **
14977285-C-CT 12865360-C-CT 10×T**
6954880-C-A 7086839-C-A **
13487755-AACCC-A 11332079-AACCC-A **
10660419-A-T **
10660422-T-C **
10660427-C-T **
10873187-G-C **
8741556-C-A 8873515-C-A **
14508446-C-A 12396651-C-A **
3758477-C-A 3890436-C-A **
2719088-T-G 2851047-T-G A9943 **
3804795-A-T 3936754-A-T **
10831482-A-T **
10678460-G-C **
16625873-C-A 14513993-C-A **
7864265-C-A 7996224-C-A **
14184564-C-A 12063858-C-A **
10669112-T-G **
13998095-G-T 11877389-G-T **
10873179-C-CA **
19732413-C-CT 17620533-C-CT P5_Prx **
13304406-C-A 11148730-C-A **
6765639-G-C 6897598-G-C **
10888005-C-CCTGCT **
10888011-C-G **
7223024-CA-C 7354983-CA-C 8×A**
11027071-C-T **
8776632-C-A 8908591-C-A **
23395981-C-A 21234095-C-A **
17362865-C-A 15250985-C-A **
19599013-G-T 17487133-G-T P5_Prx **
15823745-C-A 13711865-C-A **
4918916-TTA-T 5050875-TTA-T **
21513828-C-A 19351942-C-A **
13197016-T-A 11041340-T-A **
17918617-C-A 15806737-C-A **
17821873-C-A 15709993-C-A **
14774282-G-C 12662351-G-C **
15364058-T-C 13252178-T-C **
13855570-G-T 11734864-G-T DYZ17 **
7082972-C-A 7214931-C-A **
24601761-T-TA 22455614-T-TA P3_t2 **
10977078-C-A **
10977107-C-A **
15364015-C-T 13252135-C-T **
14361924-C-A 12241219-C-A **
10657468-G-T **
11038094-C-G **
11650491-C-A DYZ17 **
23412190-C-A 21250304-C-A **
11027065-T-C FT440078 **
22783011-C-A 20621125-C-A **
10877315-C-T FT191120 **
13855550-G-T 11734844-G-T DYZ17 **
13855551-G-GAAAGAAATAT 11734845-G-GAAAGAAATAT DYZ17 **
15364057-C-T 13252177-C-T **
19138716-C-A 17026836-C-A **
7310663-C-A 7442622-C-A **
13708979-G-A 11553303-G-A DYZ17 **
14364135-G-T 12243430-G-T **
15671131-C-T 13559251-C-T **
10873175-T-TTCCA **
15402980-C-A 13291100-C-A **
8154150-TG-T 8286109-TG-T **
23801726-T-A 21639840-T-A **
22023236-C-A 19861350-C-A **
10821959-T-C **
13708977-A-G 11553301-A-G DYZ17 **
10678491-G-C **
14507715-C-A 12395920-C-A **
17277147-C-A 15165267-C-A **
20603797-C-A 18441911-C-A P5_Dst **
28771881-C-A 26625734-C-A **
21780438-G-A **
7090644-C-A 7222603-C-A **
28802748-C-A 26656601-C-A **
24446746-C-A 22300599-C-A **
17403832-C-A 15291952-C-A **
13643873-C-A 11488197-C-A **
11001799-T-C **
11001815-C-G **
11001819-T-C **
10923738-T-G **
56842198-C-A **
11001787-ATTCCC-A **
8671488-C-A 8803447-C-A **
10779168-C-A **
13226305-C-A 11070629-C-A **
18071818-C-A 15959938-C-A **
5264175-G-T 5396134-G-T **
18174807-C-A 16062927-C-A **
9075188-C-A 9237579-C-A 20×T**
4521779-C-A 4653738-C-A **
5828977-AC-A 5960936-AC-A **
6786907-A-T 6918866-A-T **
10033048-C-A 10195439-C-A **
13278453-C-A 11122777-C-A **
19622018-G-A 17510138-G-A P5_Prx **
17854381-TC-T 15742501-TC-T **
2928193-C-A 3060152-C-A **
7341100-G-T 7473059-G-T **
4567077-C-A 4699036-C-A **
20045573-T-TCA 17933693-T-TCA P5_Prx **
6786900-C-T 6918859-C-T **
19622032-T-A 17510152-T-A P5_Prx **
15321376-C-A 13209494-C-A **
15866047-G-A 13754167-G-A **
18959322-C-A 16847442-C-A **
4065880-C-A 4197839-C-A **
6944912-C-A 7076871-C-A **
10972673-CTCCAT-C **
15530043-G-A 13418163-G-A **
20640212-G-T 18478326-G-T P4_Prx **
16938438-C-A 14826558-C-A **
10790354-C-A **
15145191-C-A 13033278-C-A **
14458121-C-A 12337394-C-A **
18080472-C-A 15968592-C-A **
17584156-TGA-T 15472276-TGA-T **
9887068-T-G 10049459-T-G **
14538043-T-G 12426244-T-G **
15364009-G-A 13252129-G-A **
15364016-C-T 13252136-C-T **
9978563-C-A 10140954-C-A **
5612553-T-C 5744512-T-C **
11005332-G-C **
10750699-T-A **
23997099-C-A 21850952-C-A **
14474807-C-A 12354076-C-A **
19866999-G-T 17755119-G-T P5_Prx **
9799166-C-A 9961557-C-A **
11014312-T-C **
28635994-C-A 26489847-C-A **
4087873-G-A 4219832-G-A **
14562833-C-A 12451033-C-A **
13326130-A-T 11170454-A-T **
6809372-A-G 6941331-A-G **
2975472-A-T 3107431-A-T **
11027061-T-G **
15497456-C-A 13385576-C-A **
11663701-C-A DYZ17 **
14391682-C-A 12270978-C-A **
10875966-C-A **
2669783-T-G 2801742-T-G **
2718990-T-C 2850949-T-C **
2719007-C-T 2850966-C-T **
2719027-G-GGC 2850986-G-GGC **
2719041-C-G 2851000-C-G **
2719042-GC-G 2851001-GC-G **
2729962-T-A 2861921-T-A **
2760018-C-CA 2891977-C-CA **
2769326-C-A 2901285-C-A **
2784609-C-A 2916568-C-A **
2812810-G-T 2944769-G-T **
2853594-C-A 2985553-C-A **
2932545-T-A 3064504-T-A **
2976152-G-T 3108111-G-T **
3045859-C-G 3177818-C-G **
3048189-G-T 3180148-G-T **
3061286-C-T 3193245-C-T **
3178355-T-G 3310314-T-G **
3534632-T-C 3666591-T-C **
3627541-C-A 3759500-C-A **
3656796-C-A 3788755-C-A **
3723044-C-A 3855003-C-A **
3723045-T-G 3855004-T-G **
3790801-GGTGT-G 3922760-GGTGT-G 9×GT**
3821610-G-T 3953569-G-T **
3865931-C-A 3997890-C-A **
3876925-C-A 4008884-C-A **
3877337-A-T 4009296-A-T **
3914864-T-C 4046823-T-C **
3914876-T-C 4046835-T-C **
3914880-C-T 4046839-C-T **
3914884-T-C 4046843-T-C **
3914888-C-G 4046847-C-G **
3914900-A-G 4046859-A-G **
3914903-A-C 4046862-A-C **
3914904-G-A 4046863-G-A **
3950852-A-G 4082811-A-G **
4128938-C-A 4260897-C-A **
4129773-A-T 4261732-A-T **
4159633-A-G 4291592-A-G **
4229251-G-T 4361210-G-T **
4236315-A-G 4368274-A-G **
4262332-G-GA 4394291-G-GA 8×A**
4348119-G-T 4480078-G-T **
4376498-C-A 4508457-C-A **
4380770-C-A 4512729-C-A **
4408330-T-C 4540289-T-C **
4414482-C-A 4546441-C-A **
4415134-ATC-A 4547093-ATC-A **
4426104-G-A 4558063-G-A **
4472466-C-A 4604425-C-A **
4567784-G-T 4699743-G-T **
4605038-T-G 4736997-T-G **
4665900-C-T 4797859-C-T **
4701249-G-T 4833208-G-T **
4769037-A-G 4900996-A-G **
4794852-C-A 4926811-C-A A3207 **
4794876-TG-T 4926835-TG-T **
4794884-A-G 4926843-A-G **
4840799-C-A 4972758-C-A **
4840813-G-C 4972772-G-C **
4975786-A-G 5107745-A-G **
5075553-C-A 5207512-C-A **
5126521-T-C 5258480-T-C **
5172125-C-A 5304084-C-A **
5186767-T-A 5318726-T-A **
5205414-T-C 5337373-T-C **
5215219-C-A 5347178-C-A **
5243425-C-A 5375384-C-A **
5247190-T-A 5379149-T-A **
5248005-A-G 5379964-A-G **
5393607-A-T 5525566-A-T **
5446452-A-G 5578411-A-G **
5455506-A-AT 5587465-A-AT 8×T**
5498182-C-A 5630141-C-A **
5523102-A-C 5655061-A-C **
5586002-C-A 5717961-C-A **
5601688-C-A 5733647-C-A **
5612424-G-T 5744383-G-T **
5612458-T-G 5744417-T-G **
5612495-T-C 5744454-T-C **
5828973-ACAC-A 5960932-ACAC-A **
5969067-C-A 6101026-C-A **
5969106-T-A 6101065-T-A **
6086000-C-A 6217959-C-A **
6102084-A-C 6234043-A-C **
6148028-C-A 6279987-C-A IR3_Dst **
6359201-A-G 6491160-A-G **
6369545-A-G 6501504-A-G **
6440279-C-A 6572238-C-A **
6475371-G-C 6607330-G-C **
6479852-G-T 6611811-G-T **
6491284-G-C 6623243-G-C **
6510063-G-T 6642022-G-T **
6516939-A-T 6648898-A-T **
6580096-T-G 6712055-T-G **
6593439-C-A 6725398-C-A **
6646954-T-G 6778913-T-G **
6651588-C-A 6783547-C-A **
6730533-C-A 6862492-C-A **
6757056-C-A 6889015-C-A **
6765979-C-A 6897938-C-A **
6771491-C-A 6903450-C-A **
6787012-A-G 6918971-A-G **
6790195-C-A 6922154-C-A **
6792472-C-G 6924431-C-G **
6833180-T-G 6965139-T-G **
6881415-T-C 7013374-T-C **
6911373-C-A 7043332-C-A **
6918404-C-A 7050363-C-A **
6926349-T-A 7058308-T-A **
6977281-C-T 7109240-C-T **
6996726-C-T 7128685-C-T **
7015394-A-C 7147353-A-C **
7063796-G-A 7195755-G-A **
7080801-C-A 7212760-C-A **
7085343-T-C 7217302-T-C **
7093405-T-G 7225364-T-G **
7111149-C-A 7243108-C-A **
7116531-C-A 7248490-C-A **
7131909-C-T 7263868-C-T BY30804 **
7134691-C-A 7266650-C-A **
7160904-T-G 7292863-T-G **
7166967-C-A 7298926-C-A **
7189952-G-T 7321911-G-T **
7285153-G-C 7417112-G-C **
7301685-C-A 7433644-C-A **
7332843-G-T 7464802-G-T **
7335744-T-A 7467703-T-A **
7341120-A-T 7473079-A-T **
7374410-T-C 7506369-T-C **
7590624-T-A 7722583-T-A **
7645543-C-A 7777502-C-A **
7723833-A-G 7855792-A-G **
7723836-AG-A 7855795-AG-A **
7755214-C-A 7887173-C-A **
7869050-A-G 8001009-A-G **
7970328-G-T 8102287-G-T **
8072377-C-A 8204336-C-A **
8075130-T-G 8207089-T-G **
8078408-G-T 8210367-G-T **
8281685-A-G 8413644-A-G **
8325390-C-A 8457349-C-A **
8344042-C-A 8476001-C-A **
8379647-G-A 8511606-G-A **
8672061-C-A 8804020-C-A **
8733622-C-T 8865581-C-T **
8733733-G-T 8865692-G-T **
8741617-A-G 8873576-A-G **
8865724-G-T 8997683-G-T **
9108430-G-T **
9076910-G-T 9239301-G-T **
9309727-C-A 9472118-C-A **
9414544-T-G 9576935-T-G **
9499369-T-C 9661760-T-C **
9672307-A-T 9834698-A-T IR3_Prx **
9675431-C-T 9837822-C-T IR3_Prx **
9778890-G-T 9941281-G-T **
9839507-C-A 10001898-C-A **
9865091-GATAATACA-G 10027482-GATAATACA-G **
9927298-C-A 10089689-C-A **
9936389-T-C 10098780-T-C **
9964335-T-G 10126726-T-G **
10015956-C-A 10178347-C-A **
10032281-G-A 10194672-G-A **
10032286-C-T 10194677-C-T **
10032311-G-T 10194702-G-T **
10632613-T-C **
10657612-C-A FT428325 **
10657837-C-A **
10659710-A-C **
10660264-A-T **
10673812-C-T **
10673963-C-T **
10678446-C-A **
10678455-C-G **
10678457-T-A **
10678484-C-G **
10678496-G-C **
10678509-G-A **
10678512-C-A **
10678514-A-C **
10678537-A-C **
10678551-T-A **
10678565-C-T **
10683213-C-G **
10687910-A-G **
10757531-T-C **
10757864-G-A **
10758108-T-A **
10762227-T-C **
10762814-T-G **
10763839-G-T **
10767490-A-C **
10770354-T-C **
10779089-T-A **
10781290-A-G **
10802174-TCCACTTTACTC-T **
10821914-C-CCATAA **
10821937-C-CATCAG **
10821962-C-A **
10822011-C-A **
10828977-C-T **
10841151-C-A **
10848062-C-T **
10861148-TTCTGC-T **
10868817-G-C **
10869478-T-G **
10873504-A-G **
10877312-G-C FT191121 **
10884699-C-A **
10892155-G-T **
10917458-G-T **
10929757-C-A **
10936572-T-C **
10936573-G-A **
10936575-C-T **
10936577-A-C **
10936595-T-G **
10936931-G-T **
10951978-C-A **
10956684-C-A **
10958644-T-G **
10963464-A-C **
10963585-G-C **
10968489-C-A **
10972973-C-A **
10977126-T-A **
10981416-T-C **
10989236-C-A **
10997497-C-A **
11001896-A-T **
11001904-A-G **
11003546-C-G **
11005322-C-A **
11005325-C-T **
11005330-A-T **
11007403-C-G **
11011330-C-A **
11016838-T-A **
11037769-G-A **
13197907-A-T 11042231-A-T **
13236197-G-A 11080521-G-A **
13238297-C-T 11082621-C-T **
13255435-C-G 11099759-C-G **
13394992-T-A 11239316-T-A **
13411895-T-A 11256219-T-A **
13429822-T-A 11274146-T-A **
13509071-A-T 11353395-A-T **
13565579-A-G 11409903-A-G **
13575541-C-A 11419865-C-A **
13578557-G-T 11422881-G-T **
13582647-C-A 11426971-C-A **
13602684-C-A 11447008-C-A **
13627161-A-C 11471485-A-C **
11676346-G-C DYZ17 **
13805200-T-G 11684494-T-G DYZ17 **
13856789-A-G 11736083-A-G DYZ17 **
13859280-C-A 11738574-C-A DYZ17 **
13870437-A-G 11749731-A-G **
13921730-T-A 11801024-T-A **
13929910-C-A 11809204-C-A **
13935135-C-A 11814429-C-A **
13935208-C-T 11814502-C-T **
13937573-G-A 11816867-G-A BY189053 **
13940358-T-C 11819652-T-C **
13944658-C-G 11823952-C-G **
13976410-C-A 11855704-C-A **
13993648-A-G 11872942-A-G **
13998091-G-TTA 11877385-G-TTA **
14021579-G-T 11900873-G-T **
14052891-A-C 11932185-A-C **
14077193-T-C 11956487-T-C **
14089083-C-T 11968377-C-T **
14143042-C-AAT 12022336-C-AAT **
14143046-G-A 12022340-G-A **
14153151-A-T 12032445-A-T **
14181701-G-T 12060995-G-T **
14212187-A-C 12091481-A-C **
14255051-T-A 12134345-T-A **
14263329-C-A 12142623-C-A **
14286023-A-G 12165317-A-G **
14294246-A-C 12173540-A-C **
14352228-C-A 12231523-C-A **
14490276-C-T 12369545-C-T **
14508461-C-A 12396666-C-A **
14513249-C-A 12401454-C-A **
14539790-C-A 12427991-C-A **
14549086-A-G 12437287-A-G **
14549094-A-G 12437295-A-G **
14605798-AT-A 12494000-AT-A **
14605953-C-A 12494155-C-A **
14607881-G-T 12496083-G-T **
14614585-G-C 12502783-G-C **
14620849-T-A 12509047-T-A **
14685889-T-G 12573955-T-G **
14802945-C-G 12691016-C-G **
14887943-C-A 12776009-C-A **
14953529-C-G 12841603-C-G **
15070434-G-T 12958525-G-T **
15092393-C-T 12980482-C-T **
15109280-T-C 12997367-T-C **
15177884-C-A 13065970-C-A **
15178764-A-T 13066850-A-T **
15201415-A-G 13089501-A-G **
15210839-G-A 13098925-G-A **
15212461-T-C 13100547-T-C **
15221135-G-C 13109221-G-C **
15232000-T-A 13120086-T-A **
15249031-C-A 13137117-C-A **
15264721-C-A 13152811-C-A **
15280255-C-A 13168354-C-A **
15280620-C-A 13168719-C-A **
15285810-T-G 13173909-T-G **
15342578-T-A 13230697-T-A **
15346969-A-T 13235088-A-T **
15363991-C-T 13252111-C-T **
15364038-C-CTG 13252158-C-CTG **
15391295-A-G 13279415-A-G **
15394346-C-A 13282466-C-A **
15400261-A-C 13288381-A-C **
15402390-C-A 13290510-C-A **
15450278-C-A 13338398-C-A **
15474904-C-A 13363024-C-A **
15490458-C-T 13378578-C-T **
15497464-T-G 13385584-T-G **
15712276-A-T 13600396-A-T **
15728744-G-A 13616864-G-A **
15742486-A-T 13630606-A-T **
15761992-T-C 13650112-T-C **
15785804-T-C 13673924-T-C **
15785893-G-C 13674013-G-C **
15786685-C-A 13674805-C-A **
16006686-A-G 13894806-A-G **
16016329-C-T 13904449-C-T **
16053517-G-T 13941637-G-T **
16170420-T-C 14058540-T-C **
16214068-A-T 14102188-A-T **
16341208-G-A 14229328-G-A **
16342547-A-G 14230667-A-G **
16351661-A-C 14239781-A-C **
16354916-G-T 14243036-G-T **
16429940-G-T 14318060-G-T FTB60365 **
16431030-C-A 14319150-C-A **
16475223-T-G 14363343-T-G **
16489979-C-G 14378099-C-G **
16490083-C-A 14378203-C-A **
16522832-C-A 14410952-C-A **
16620196-G-T 14508316-G-T **
16636784-C-A 14524904-C-A **
16868746-CATATATATATATATATATATATATATATATAT-C 14756866-CATATATATATATATATATATATATATATATAT-C 22×AT**
16952839-C-A 14840959-C-A **
17042951-C-A 14931071-C-A **
17071175-G-A 14959295-G-A **
17083197-G-C 14971317-G-C **
17122333-G-T 15010453-G-T **
17203553-G-C 15091673-G-C **
17224384-G-T 15112504-G-T **
17297059-C-A 15185179-C-A **
17297162-C-A 15185282-C-A **
17313527-C-A 15201647-C-A **
17315418-A-C 15203538-A-C **
17315543-A-G 15203663-A-G **
17343729-C-A 15231849-C-A FT246421 **
17373390-G-T 15261510-G-T **
17425046-C-A 15313166-C-A **
17464876-C-T 15352996-C-T **
17538314-T-G 15426434-T-G **
17546287-A-C 15434407-A-C **
17605162-C-A 15493282-C-A **
17691995-AT-A 15580115-AT-A **
17692022-C-A 15580142-C-A **
17697503-C-A 15585623-C-A Y99975 **
17713920-C-A 15602040-C-A **
17713969-T-C 15602089-T-C **
17741064-C-A 15629184-C-A **
17770354-C-T 15658474-C-T **
17782637-T-C 15670757-T-C **
17869681-G-A 15757801-G-A **
17885683-C-A 15773803-C-A **
17918643-C-A 15806763-C-A **
17991151-AAT-A 15879271-AAT-A P7_Prx **
17991178-G-A 15879298-G-A P7_Prx **
18006755-G-T 15894875-G-T P7_Gap **
18119512-C-A 16007632-C-A **
18154471-C-A 16042591-C-A **
18188565-G-T 16076685-G-T **
18196406-G-T 16084526-G-T **
18279998-GA-G 16168118-GA-G P6_Prx **
18650641-T-C 16538761-T-C **
18733558-C-A 16621678-C-A **
18733814-T-C 16621934-T-C **
18733832-G-T 16621952-G-T **
18789608-G-A 16677728-G-A **
18789709-A-G 16677829-A-G **
18853557-C-A 16741677-C-A **
18855494-G-C 16743614-G-C **
18924882-C-A 16813002-C-A **
18925434-T-A 16813554-T-A **
18974737-G-T 16862857-G-T **
18994468-G-A 16882588-G-A **
19109908-G-T 16998028-G-T **
19297088-G-T 17185208-G-T **
19318275-C-A 17206395-C-A **
19409978-T-C 17298098-T-C **
19415814-T-C 17303934-T-C **
19416470-A-C 17304590-A-C **
19424291-C-A 17312411-C-A **
19429725-C-G 17317845-C-G **
19463730-A-G 17351850-A-G **
19463773-G-T 17351893-G-T **
19535694-C-A 17423814-C-A **
19800063-A-G 17688183-A-G P5_Prx **
19866947-G-T 17755067-G-T P5_Prx **
19866991-C-T 17755111-C-T P5_Prx **
19867011-C-T 17755131-C-T P5_Prx **
19867014-G-A 17755134-G-A P5_Prx **
19867019-C-T 17755139-C-T P5_Prx **
20101826-C-T 17989946-C-T P5_Dst **
20330504-G-T 18168618-G-T P5_Dst **
20438791-A-C 18276905-A-C P5_Dst **
20438793-T-G 18276907-T-G P5_Dst **
20438811-G-C 18276925-G-C P5_Dst **
20492879-C-CG 18330993-C-CG P5_Dst **
20492914-G-T 18331028-G-T P5_Dst **
20492937-C-G 18331051-C-G P5_Dst **
20802744-T-C 18640858-T-C P4_Gap **
20840828-C-A 18678942-C-A P4_Gap **
21068208-C-A 18906322-C-A **
21115712-C-A 18953826-C-A **
21154598-C-A 18992712-C-A **
21220240-CTTTTTT-C 19058354-CTTTTTT-C 19×T**
21297885-C-A 19135999-C-A **
21315227-C-A 19153341-C-A **
21320044-A-T 19158158-A-T **
21334861-G-T 19172975-G-T **
21352798-C-G 19190912-C-G **
21392346-T-A 19230460-T-A **
21392559-G-T 19230673-G-T **
21394807-A-G 19232921-A-G **
21673187-C-A 19511301-C-A **
21692040-C-A 19530154-C-A **
21807037-T-A 19645151-T-A **
21856670-T-G 19694784-T-G **
21945233-C-A 19783347-C-A **
21950115-T-C 19788229-T-C **
21969405-G-A 19807519-G-A **
21974868-C-T 19812982-C-T **
22036053-A-G 19874167-A-G **
22055398-C-A 19893512-C-A **
22076897-T-C 19915011-T-C Y77706 **
22077223-C-A 19915337-C-A **
22079437-C-A 19917551-C-A **
22088860-T-C 19926974-T-C **
22124439-T-C 19962553-T-C **
22166664-C-A 20004778-C-A **
22204402-C-G 20042516-C-G **
22517141-G-A 20355255-G-A **
22991094-C-A 20829208-C-A **
23007732-T-A 20845846-T-A **
23082107-C-A 20920221-C-A **
23185362-G-T 21023476-G-T **
23188345-A-C 21026459-A-C **
23291075-C-A 21129189-C-A **
23305968-C-A 21144082-C-A **
23352359-T-C 21190473-T-C **
23440655-T-C 21278769-T-C **
23723600-G-TAT 21561714-G-TAT **
23831368-C-T 21669482-C-T **
23848574-G-A 21686688-G-A **
23876052-C-A 21714166-C-A **
21750961-T-C **
23955007-A-G 21808860-A-G **
24127484-G-T 21981337-G-T P3_b1 **
24491550-T-G 22345403-T-G **
24509489-C-A 22363342-C-A **
24512788-C-A 22366641-C-A **
24614175-C-A 22468028-C-A P3_t2 **
25530396-C-A 23384249-C-A P1_gr1 **
25533066-T-C 23386919-T-C P1_gr1 **
26012909-A-AT 23866762-A-AT P1_Y1 **
26079215-G-T 23933068-G-T P1_Y1 **
26325118-G-T 24178971-G-T P1_Y1 **
26495715-T-G 24349568-T-G P1_Y1 **
26544606-C-T 24398459-C-T P1_g2 **
27808426-A-G 25662279-A-G P1_Y2 **
27815668-G-T 25669521-G-T P1_Y2 **
27967238-G-GTA 25821091-G-GTA P1_Y2 **
28345688-C-CAT 26199541-C-CAT P1_gr2 **
28429398-C-A 26283251-C-A P1_gr2 **
28498225-C-A 26352078-C-A **
28500989-G-T 26354842-G-T **
28534648-C-A 26388501-C-A **
28547388-C-T 26401241-C-T **
28567436-A-T 26421289-A-T **
28576677-C-A 26430530-C-A **
28591284-A-T 26445137-A-T **
28632832-C-A 26486685-C-A **
28687859-C-A 26541712-C-A **
28755095-C-A 26608948-C-A **
28756177-C-A 26610030-C-A **
28763303-G-T 26617156-G-T **
28768755-C-G 26622608-C-G **
28781543-C-A 26635396-C-A **
28802763-G-A 26656616-G-A **
56835929-CACTCA-C **
56838849-C-A **
56841515-G-T **
56842265-C-A **
56842366-T-C **
56848254-C-A **
56858049-C-A **
56876266-C-A **
56883151-C-G **
6989107-T-A 7121066-T-A 23×A***
16818677-A-AATAT 14706797-A-AATAT 12×AT***
23380584-G-A 21218698-G-A ***
22218332-C-A 20056446-C-A DYZ19 ***
8154161-C-T 8286120-C-T ***
21287967-CTTTT-C 19126081-CTTTT-C 16×T***
9959856-ATAATAATTAA-A,ATAATAAT 10122247-ATAATAATTAA-A,ATAATAAT ***
13487725-G-C,T 11332049-G-C,T ***
9847287-C-T 10009678-C-T ***
22237090-C-A 20075204-C-A DYZ19 ***
22252568-G-C 20090682-G-C DYZ19 ***
22289995-TC-T 20128109-TC-T DYZ19 ***
22296828-A-G 20134942-A-G DYZ19 ***
22315288-T-C 20153402-T-C DYZ19 ***
22326754-T-C 20164868-T-C DYZ19 ***
22368109-G-C 20206223-G-C DYZ19 ***
22488449-AG-A 20326563-AG-A DYZ19 ***
22506406-A-T 20344520-A-T DYZ19 ***
24097141-T-C 21950994-T-C P3_b1 ***
24147736-G-T 22001589-G-T P3_b1 ***
24193611-G-A 22047464-G-A P3_b1 ***
24836002-C-G 22689855-C-G P3_b2 ***
25344637-C-T 23198490-C-T P2_r1 ***
9029736-C-T 9192127-C-T 16×T***
10669496-C-T ***
10669520-A-G ***
10669525-A-ATAT ***
10973613-A-C ***
6671837-C-A 6803796-C-A ***
15073293-G-T 12961383-G-T ***
16245911-G-T 14134031-G-T ***
7803116-GAA-G 7935075-GAA-G 14×A***
18841138-C-A 16729258-C-A ***
10682546-C-CCTTTA ***
56836140-C-A ***
11665038-C-A DYZ17 ***
10989104-C-G,T ***
28711647-C-A 26565500-C-A ***
2752399-C-A 2884358-C-A ***
3593365-AGG-A 3725324-AGG-A ***
6925251-C-A 7057210-C-A ***
7435436-C-A 7567395-C-A ***
8649789-CA-C,CAA 8781748-CA-C,CAA 13×A***
9965300-G-T 10127691-G-T ***
10785233-C-A ***
10798314-TC-T ***
10799544-C-G,T ***
10959334-C-A ***
10992295-CA-C ***
13453170-ATTCCATTCCATTCCATTCCA-A,ATTCCATTTGATTCCATTCCT 11297494-ATTCCATTCCATTCCATTCCA-A,ATTCCATTTGATTCCATTCCT ***
11643717-T-G DYZ17 ***
15353787-C-T 13241906-C-T ***
15685157-A-T 13573277-A-T ***
15786790-G-T 13674910-G-T ***
17552334-G-A 15440454-G-A ***
19518306-T-C 17406426-T-C ***
21146219-C-A 18984333-C-A ***
21542076-C-A 19380190-C-A ***
22029925-C-A 19868039-C-A ***
23190229-GA-G 21028343-GA-G ***
24446745-A-T 22300598-A-T ***
28468823-GCATTTAAAACT-G 26322676-GCATTTAAAACT-G ***
28722267-C-A 26576120-C-A ***
28745206-C-A 26599059-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual19967463-T-A17855583-T-A10T 7A
Manual6274770-G-A6406729-G-A1A