Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > Z46513 > PH1909 > CTS7079

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
28707237-T-C 26561090-T-C BY36453 Y+
22443987-G-C 20282101-G-C DYZ19 +
13679573-C-T 11523897-C-T Z43330 +
14771486-C-T 12659555-C-T BY36435 YY+
14992110-G-A 12880195-G-A BY98951 YY+
15406118-A-G 13294238-A-G BY36437 YY+
15415065-G-A 13303185-G-A BY36438 YY+
15421813-C-T 13309933-C-T BY101485 YY+
15472655-C-G 13360775-C-G BY101806 YY+
15751251-A-G 13639371-A-G BY36439 YY+
17239410-C-G 15127530-C-G BY113218 YY+
9871660-G-T 10034051-G-T BY81652 YY+
17344246-G-A 15232366-G-A BY36440 YY+
17949611-G-A 15837731-G-A BY36441 YY+
18173901-C-T 16062021-C-T BY36442 YY+
18265748-A-G 16153868-A-G BY36443 +
18414115-A-C 16302235-A-C BY36444 P6_Gap +
18758418-T-A 16646538-T-A BY36445 YY+
22444825-T-C 20282939-T-C BY36448 DYZ19 +
22443800-A-T 20281914-A-T BY36447 DYZ19 +
21624909-G-A 19463023-G-A BY134297 YY+
9872001-G-C 10034392-G-C BY81655 YY+
22740482-A-G 20578596-A-G BY140447 YY+
22784845-GTATT-G 20622959-GTATT-G +
6963615-C-A 7095574-C-A BY36429 YY+
22105863-C-T 19943977-C-T M6018 YY+
8872838-C-A 9004797-C-A BY76507 Y+
24008039-C-A 21861892-C-A BY36452 Y+
23133703-T-C 20971817-T-C BY36451 YY+
3680683-T-G 3812642-T-G BY36428 +
7277991-T-C 7409950-T-C BY36430 YY+
22791798-A-G 20629912-A-G BY36450 YY+
8579575-G-A 8711534-G-A BY36431 YY+
25902313-C-T 23756166-C-T P1_Y1 +
15399742-C-T 13287862-C-T BY36436 **
14136291-A-G 12015585-A-G **
5359089-G-T 5491048-G-T **
28731995-C-A 26585848-C-A **
17064990-G-A 14953110-G-A CTS6704 M8145 AM01321 **
23115893-C-A 20954007-C-A CTS11451 **
22425352-A-T 20263466-A-T DYZ19 ***
22318754-A-C 20156868-A-C DYZ19 ***
24748319-T-C 22602172-T-C P3_b2 ***
22511388-G-T 20349502-G-T DYZ19 ***
25317121-G-A 23170974-G-A P2_r1 ***
25221248-A-G 23075101-A-G P2_r1 ***
25162373-G-GT 23016226-G-GT g1 ***
24179752-C-G 22033605-C-G P3_b1 ***
22292255-C-A 20130369-C-A DYZ19 ***
22301404-C-A 20139518-C-A DYZ19 ***
13455529-C-A 11299853-C-A ***
22277547-T-C 20115661-T-C DYZ19 ***
6283432-CA-C 6415391-CA-C IR3_Dst ***
6130208-T-TA 6262167-T-TA 10×A***
23272346-T-TTTCC 21110460-T-TTTCC 5×TTCC***
13385817-T-C 11230141-T-C ***
22287722-G-A 20125836-G-A BY43746 DYZ19 ***
19795144-C-A 17683264-C-A P5_Prx 16×A***
22436291-A-AG,AGT 20274405-A-AG,AGT DYZ19 ***
24812140-G-A 22665993-G-A P3_b2 ***
22276606-A-G 20114720-A-G DYZ19 ***
9329809-C-T 9492200-C-T ***
13459161-C-A 11303485-C-A BY36433 ***
19772158-C-T 17660278-C-T P5_Prx ***
19901803-A-G 17789923-A-G P5_Prx ***
20749854-G-A 18587968-G-A P4_Prx ***
20750828-T-C 18588942-T-C P4_Prx ***
22226390-G-T 20064504-G-T DYZ19 ***
22231157-C-T 20069271-C-T BY10602 DYZ19 ***
16108702-C-CTTTAT 13996822-C-CTTTAT P8_Prx 10×TTTCT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B33541052876176100407683387
Used in age calculations1052876176100407683387
Counts of SNPs2324
Variant counts last updated 2020-02-15 02:51:52.

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