Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > A6387 > 9451841-C-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N134387
BigY2
N134387
20638348-C-T 18476462-C-T P4_Prx ***A*
6163492-T-A 6295451-T-A IR3_Dst ***A*
19843033-C-T 17731153-C-T P5_Prx ***A*
22277837-T-G 20115951-T-G DYZ19 ***A*
22308738-A-T 20146852-A-T DYZ19 ***A*
6208519-A-G 6340478-A-G IR3_Dst ***A*
13687252-G-T 11531576-G-T A*
26061705-T-C 23915558-T-C P1_Y1 ***A*
17922017-T-C 15810137-T-C BY118465 YY++
17941212-G-A 15829332-G-A BY118583 YY++
18599604-G-C 16487724-G-C BY122474 YY++
17150957-G-A 15039077-G-A BY112689 YY++
16793935-G-A 14682055-G-A BY110179 YY++
18643553-T-C 16531673-T-C BY122805 YY++
19109692-A-G 16997812-A-G BY126336 YY++
19263364-G-A 17151484-G-A BY127757 YY++
17996207-A-T 15884327-A-T BY119049 P7_Gap Y++
24782781-A-C 22636634-A-C P3_b2 +
20301122-G-A 18139236-G-A P5_Dst **+
15485928-T-C 13374048-T-C BY101904 YY++
21141774-C-T 18979888-C-T BY130647 YY++
21432396-A-C 19270510-A-C BY132873 YY++
21482613-C-G 19320727-C-G BY133267 YY++
22457936-G-C 20296050-G-C DYZ19 ++
22520095-T-C 20358209-T-C BY138658 Y++
22917581-G-C 20755695-G-C BY141699 YY++
23253306-A-G 21091420-A-G YY+**
23535191-G-A 21373305-G-A BY146019 YY++
23543292-A-G 21381406-A-G BY146110 YY++
23597661-A-G 21435775-A-G BY146604 YY++
16045153-CTT-C 13933273-CTT-C **+
19402369-G-C 17290489-G-C BY128797 YY++
13814225-C-G 11693519-C-G ++
7614054-C-A 7746013-C-A BY66294 YY++
12155-C-G +
22301952-G-A 20140066-G-A BY34494 DYZ19 +
13798863-G-T 11678157-G-T BY89923 +
6126070-G-A 6258029-G-A 9451841-C-T +
6391214-G-A 6523173-G-A ++
6817740-T-G 6949699-T-G BY61510 YY++
7752758-G-A 7884717-G-A Z37359 YY++
13659640-T-A 11503964-T-A BY87369 +
13688589-G-T 11532913-G-T BY54334 ***+
22280661-C-A 20118775-C-A DYZ19 ****
13689406-G-C 11533730-G-C *
13689404-T-A 11533728-T-A *
16242632-T-TTCTATCTATCTATCTATCTA 14130752-T-TTCTATCTATCTATCTATCTA 10×TCTA****
11677582-C-T **
11025611-G-T **
11023016-G-T **
14177868-C-A 12057162-C-A **
11016067-G-A **
11011243-C-A **
11009436-C-A **
10993303-C-A **
10977095-C-T **
10980144-C-A **
11029538-C-A **
10958647-A-G **
10958641-C-A **
10928103-C-A **
10894982-C-A **
10845925-C-A **
10835865-G-T **
10822429-T-A **
10807002-G-T **
11025713-C-A **
14025699-A-G 11904993-A-G **
11030809-C-T **
13915870-G-T 11795164-G-T **
11671988-C-A **
10804251-AG-A **
13857734-TG-T 11737028-TG-T **
13884864-GAA-G 11764158-GAA-G 11×A**
13888764-G-T 11768058-G-T **
13394851-GGC-G 11239175-GGC-G **
13394851-G-A 11239175-G-A **
13349653-C-A 11193977-C-A **
13563654-G-T 11407978-G-T **
11030826-C-A **
13209289-G-A 11053613-G-A **
11032201-C-A **
13940085-C-A 11819379-C-A FGC63205 **
13433710-C-A 11278034-C-A **
11030827-C-T **
13975932-C-A 11855226-C-A **
11674639-C-A **
14176212-C-A 12055506-C-A **
10804540-T-C **
6688735-C-A 6820694-C-A **
10801732-C-CTGTCT **
22851390-T-C 20689504-T-C **
7391878-C-A 7523837-C-A **
7372292-C-A 7504251-C-A **
7242597-T-C 7374556-T-C **
7239589-G-A 7371548-G-A **
7166318-T-C 7298277-T-C **
7153013-C-A 7284972-C-A **
7152743-AGGCTG-A 7284702-AGGCTG-A **
7097367-A-G 7229326-A-G **
7094547-C-A 7226506-C-A **
7029619-C-A 7161578-C-A **
7579654-C-A 7711613-C-A **
6976074-C-A 7108033-C-A **
6793538-C-A 6925497-C-A **
6791748-C-A 6923707-C-A **
6774816-G-T 6906775-G-T **
6752622-C-A 6884581-C-A **
6699546-C-A 6831505-C-A **
6688639-A-G 6820598-A-G **
6664377-G-T 6796336-G-T **
6593616-A-G 6725575-A-G **
6593544-G-A 6725503-G-A **
7448650-C-A 7580609-C-A IR1_L **
7996756-G-A 8128715-G-A **
10796677-C-CGT **
9877935-AGG-A 10040326-AGG-A **
10780305-T-C **
10777885-C-A **
10769585-C-G **
10677596-C-A **
22768251-T-G 20606365-T-G **
10653739-C-A **
10015048-C-A 10177439-C-A **
10011119-G-C 10173510-G-C **
9962311-C-A 10124702-C-A **
9941414-A-C 10103805-A-C **
9877927-A-T 10040318-A-T **
8043262-C-T 8175221-C-T **
9678348-A-T 9840739-A-T IR3_Prx **
9462005-G-T 9624396-G-T **
8854221-G-T 8986180-G-T **
8851161-C-A 8983120-C-A **
8786397-G-T 8918356-G-T **
14297305-C-A 12176599-C-A **
22782739-A-G 20620853-A-G **
22787081-T-C 20625195-T-C **
8386128-G-A 8518087-G-A **
8167976-C-T 8299935-C-T **
14180978-C-A 12060272-C-A **
14949675-C-A 12837749-C-A **
14328122-G-T 12207416-G-T **
17552011-C-T 15440131-C-T **
18365658-A-G 16253778-A-G P6_Prx **
18289745-TTAAAATAATTAGC-T 16177865-TTAAAATAATTAGC-T P6_Prx **
18226688-A-G 16114808-A-G **
18185456-C-A 16073576-C-A **
18085432-T-G 15973552-T-G **
17997280-C-A 15885400-C-A P7_Gap **
21574498-G-T 19412612-G-T 10×T**
17792247-C-A 15680367-C-A **
17788921-C-G 15677041-C-G **
17547606-C-A 15435726-C-A **
18385531-G-T 16273651-G-T P6_Gap **
17505645-C-A 15393765-C-A **
17500456-A-G 15388576-A-G **
17490300-A-G 15378420-A-G **
17439361-C-A 15327481-C-A **
17403863-C-A 15291983-C-A **
17276159-C-A 15164279-C-A **
17217357-C-A 15105477-C-A **
17215136-G-T 15103256-G-T **
21588438-C-A 19426552-C-A **
21713384-C-T 19551498-C-T **
18382633-C-A 16270753-C-A P6_Gap **
18443400-A-T 16331520-A-T P6_Dst **
16827511-C-A 14715631-C-A **
19542153-C-A 17430273-C-A **
21201651-G-A 19039765-G-A **
21184535-C-A 19022649-C-A **
21139579-C-A 18977693-C-A **
21124130-G-T 18962244-G-T **
21124006-G-T 18962120-G-T **
21043059-C-A 18881173-C-A **
20865410-T-A 18703524-T-A P4_Dst **
20842538-GAAA-G 18680652-GAAA-G P4_Dst **
19721455-G-T 17609575-G-T P5_Prx **
19479128-A-C 17367248-A-C **
18593450-C-A 16481570-C-A **
19302849-G-T 17190969-G-T **
19298309-C-T 17186429-C-T **
21489084-C-A 19327198-C-A **
19135284-C-A 17023404-C-A **
19082326-T-A 16970446-T-A **
19048007-C-A 16936127-C-A **
19012561-GC-G 16900681-GC-G **
18863630-G-T 16751750-G-T **
18848363-T-A 16736483-T-A **
18838471-G-A 16726591-G-A Y74134 **
16932824-C-A 14820944-C-A **
16683702-C-T 14571822-C-T **
14352279-G-A 12231574-G-A **
14654202-C-A 12542267-C-A **
14985051-T-G 12873119-T-G **
14965343-CT-C 12853418-CT-C **
6357837-G-T 6489796-G-T **
14888168-C-T 12776234-C-T **
14826566-TTG-T 12714633-TTG-T **
14769174-T-C 12657243-T-C **
14743487-C-A 12631556-C-A **
14722512-AC-A 12610580-AC-A **
14695415-G-T 12583481-G-T **
14648813-C-A 12536878-C-A **
14985186-C-T 12873254-C-T **
14584645-G-T 12472845-G-T **
14568889-T-C 12457089-T-C **
21990963-C-A 19829077-C-A **
22146754-C-A 19984868-C-A **
14509473-C-A 12397678-C-A **
14467838-C-A 12347107-C-A **
14447028-C-A 12326301-C-A **
14420685-T-TA 12299960-T-TA **
14387834-C-A 12267130-C-A **
14361926-T-G 12241221-T-G **
14985122-C-A 12873190-C-A **
15104934-C-A 12993022-C-A **
16437441-C-A 14325561-C-A **
15944415-C-A 13832535-C-A **
16428735-C-A 14316855-C-A **
16320045-G-A 14208165-G-A **
16093045-C-A 13981165-C-A **
16073369-G-T 13961489-G-T **
16038255-A-C 13926375-A-C **
16038235-G-GC 13926355-G-GC **
21775246-C-A 19613360-C-A **
21832712-C-A 19670826-C-A **
16016912-G-A 13905032-G-A **
15997430-G-T 13885550-G-T **
15906394-C-A 13794514-C-A **
21836443-G-T 19674557-G-T **
15901250-C-A 13789370-C-A **
15756561-A-G 13644681-A-G **
15753093-C-A 13641213-C-A **
15595019-A-T 13483139-A-T **
15557901-T-C 13446021-T-C **
15490542-C-T 13378662-C-T **
15468304-G-A 13356424-G-A **
15423752-G-T 13311872-G-T **
15420232-C-A 13308352-C-A **
15334360-G-T 13222478-G-T **
6587038-C-A 6718997-C-A **
4366609-G-T 4498568-G-T **
5960662-C-A 6092621-C-A **
3650865-G-T 3782824-G-T **
22485789-C-A 20323903-C-A DYZ19 **
3605944-C-A 3737903-C-A **
13973257-C-A 11852551-C-A **
9077256-G-T 9239647-G-T **
14701221-C-A 12589287-C-A **
22804066-C-A 20642180-C-A **
28661663-C-A 26515516-C-A **
6646898-C-A 6778857-C-A **
6881232-C-A 7013191-C-A **
17318359-C-A 15206479-C-A **
24381365-C-A 22235218-C-A **
24527197-A-ACAG 22381050-A-ACAG P3_t2 **
22436817-G-T 20274931-G-T DYZ19 **
24634054-C-A 22487907-C-A P3_t2 **
14267272-T-TAA 12146566-T-TAA 14×A**
21037487-C-A 18875601-C-A **
11649014-G-T **
11014923-C-A **
24363671-C-A 22217524-C-A **
20771927-A-AT 18610041-A-AT P4_Prx **
13194033-C-A 11038357-C-A **
25727921-G-A 23581774-G-A P1_b3 **
16707120-C-A 14595240-C-A **
23425512-C-A 21263626-C-A **
5934588-C-A 6066547-C-A **
28460922-C-A 26314775-C-A **
22429124-C-A 20267238-C-A DYZ19 **
11015602-C-A **
23202514-T-C 21040628-T-C **
8079524-C-A 8211483-C-A **
56839357-T-C **
10914867-A-T **
23345914-C-A 21184028-C-A **
14347863-C-A 12227158-C-A **
17584166-T-G 15472286-T-G **
23773413-A-G 21611527-A-G **
8276161-C-A 8408120-C-A **
17369434-C-A 15257554-C-A **
23787571-C-A 21625685-C-A **
17913136-C-A 15801256-C-A **
23825280-C-A 21663394-C-A **
7019034-C-A 7150993-C-A **
7362005-C-T 7493964-C-T **
19437535-AAAAG-A 17325655-AAAAG-A 4×AAAG**
10818014-A-T **
14527563-C-A 12415764-C-A **
4552739-G-T 4684698-G-T **
21316971-C-A 19155085-C-A **
3436270-C-G 3568229-C-G ****
28755670-C-A 26609523-C-A **
28798231-G-T 26652084-G-T **
13701534-G-A 11545858-G-A *****
56851408-GTC-G **
9840299-G-A 10002690-G-A *****
9840298-T-C 10002689-T-C *****
9840292-G-T 10002683-G-T *****
9840288-T-C 10002679-T-C *****
9840287-A-G 10002678-A-G *****
56851412-ACC-A **
28732819-C-A 26586672-C-A **
56861364-C-A **
18398165-A-G 16286285-A-G P6_Gap **
22518519-C-A 20356633-C-A **
22055449-C-T 19893563-C-T **
13446207-C-A 11290531-C-A **
7392229-C-T 7524188-C-T **
14131-G-T **
28698731-A-G 26552584-A-G CTS12771 **
18195183-TG-T 16083303-TG-T **
6252602-G-A 6384561-G-A FGC1699 IR3_Dst **
28742581-C-A 26596434-C-A **
22634976-C-T 20473090-C-T ****
8051857-C-A 8183816-C-A **
23790402-C-A 21628516-C-A **
25530814-G-T 23384667-G-T P1_gr1 **
13598646-C-A 11442970-C-A **
10885257-TTTCCA-T **
26418781-G-T 24272634-G-T P1_Y1 **
11022228-C-A **
7140833-C-A 7272792-C-A **
11000588-C-A **
7986247-G-T 8118206-G-T **
10763016-C-CTTTCA **
6833198-C-A 6965157-C-A **
28699061-G-T 26552914-G-T **
18838867-C-A 16726987-C-A **
16038245-C-G 13926365-C-G **
26153921-G-T 24007774-G-T P1_Y1 **
14667704-C-A 12555769-C-A **
13477480-T-C 11321804-T-C **
3812718-CA-C 3944677-CA-C 17×A**
27915080-G-T 25768933-G-T P1_Y2 **
28006851-C-A 25860704-C-A P1_Y2 **
28536289-G-C 26390142-G-C **
28634438-C-A 26488291-C-A **
7123610-C-A 7255569-C-A **
23185272-C-A 21023386-C-A **
56861769-G-T **
3442527-G-T 3574486-G-T **
22893275-C-A 20731389-C-A **
3988989-G-T 4120948-G-T **
3931049-A-G 4063008-A-G **
3849426-C-A 3981385-C-A **
3815111-A-G 3947070-A-G **
3610784-C-A 3742743-C-A **
3603261-A-C 3735220-A-C **
3603241-A-T 3735200-A-T **
3456218-C-A 3588177-C-A **
3274189-C-A 3406148-C-A **
22877856-CA-C 20715970-CA-C **
3165663-G-T 3297622-G-T **
3140397-C-A 3272356-C-A **
3035541-G-T 3167500-G-T **
2865650-C-A 2997609-C-A **
2762126-A-G 2894085-A-G **
22962078-C-A 20800192-C-A **
2682887-C-A 2814846-C-A **
2649797-C-T 2781756-C-T **
22991098-A-G 20829212-A-G **
10652481-C-A **
3994147-A-G 4126106-A-G **
4136547-C-A 4268506-C-A **
10818986-C-A **
5443347-C-A 5575306-C-A **
5896821-G-T 6028780-G-T **
5888257-A-G 6020216-A-G **
5871978-C-A 6003937-C-A **
5775097-C-A 5907056-C-A **
5725145-T-C 5857104-T-C **
5660325-C-A 5792284-C-A **
22851419-C-T 20689533-C-T **
5509352-C-A 5641311-C-A **
5452302-G-T 5584261-G-T **
5393401-GA-G 5525360-GA-G **
4168825-G-T 4300784-G-T **
5393394-GA-G 5525353-GA-G **
5341145-G-T 5473104-G-T **
5314530-T-A 5446489-T-A **
5274934-A-G 5406893-A-G **
5156618-C-A 5288577-C-A **
4778124-G-T 4910083-G-T **
4503198-G-GT 4635157-G-GT **
21476178-C-A 19314292-C-A **
4337250-C-A 4469209-C-A **
4244567-A-G 4376526-A-G **
18754812-C-A 16642932-C-A **
28586685-C-A 26440538-C-A **
19129087-C-A 17017207-C-A **
2905857-CTTTTTT-C 3037816-CTTTTTT-C 15×T**
11030771-C-G **
14371341-C-A 12250637-C-A **
17567371-C-A 15455491-C-A **
14203304-G-A 12082598-G-A **
19791380-C-A 17679500-C-A P5_Prx **
10939020-C-A **
17306501-C-A 15194621-C-A **
25030078-C-A 22883931-C-A g1 **
7475193-G-T 7607152-G-T IR1_L **
8043168-C-A 8175127-C-A **
17115049-C-A 15003169-C-A **
4969226-C-A 5101185-C-A **
23081947-C-A 20920061-C-A **
10931374-C-A **
17117350-C-A 15005470-C-A **
8321609-C-A 8453568-C-A **
23128692-C-A 20966806-C-A **
14311686-C-A 12190980-C-A **
10748293-A-ATTCCT **
13919657-C-A 11798951-C-A **
15943070-C-A 13831190-C-A **
9877924-G-A 10040315-G-A BY22760Y89447 **
13496233-C-A 11340557-C-A **
21427267-C-A 19265381-C-A **
6792405-G-A 6924364-G-A **
5281360-C-A 5413319-C-A **
2832790-C-A 2964749-C-A **
28658589-G-T 26512442-G-T **
18768529-G-T 16656649-G-T **
10860890-C-A **
21127500-C-A 18965614-C-A **
17470807-C-A 15358927-C-A **
14985187-A-G 12873255-A-G **
14985180-T-C 12873248-T-C **
56823084-G-T **
23041198-GAAAAAAAAAAAAAAAAAAAAAAAA-G 20879312-GAAAAAAAAAAAAAAAAAAAAAAAA-G 34×A**
13935648-C-A 11814942-C-A **
11677579-A-G **
13309643-C-A 11153967-C-A **
6647017-C-A 6778976-C-A **
10804346-C-A **
10668825-G-T **
22602040-C-A 20440154-C-A **
15045469-C-A 12933559-C-A **
9131338-C-A 9293729-C-A **
56835370-C-A ***
56828969-C-A ***
56685549-T-G ***
28492319-C-A 26346172-C-A ***
23002859-ATATATATATATATATATATATATATATATGTGAAATTAT-A 20840973-ATATATATATATATATATATATATATATATGTGAAATTAT-A ***
24466524-C-A 22320377-C-A ***
28803842-A-T 26657695-A-T FGC9650 ***
19255488-C-A 17143608-C-A ***
24122387-A-G 21976240-A-G P3_b1 ***
16319412-C-A 14207532-C-A ***
15928396-TTG-T 13816516-TTG-T ***
19012430-C-A 16900550-C-A ***
14191249-C-A 12070543-C-A ***
24223203-C-T 22077056-C-T P3_b1 ***
26671235-G-T 24525088-G-T P1_g2 ***
25144890-C-T 22998743-C-T g1 ***
24910296-T-C 22764149-T-C g1 ***
24695120-A-G 22548973-A-G P3_b2 ***
24671763-C-T 22525616-C-T P3_b2 ***
22316862-T-TC 20154976-T-TC DYZ19 ***
13461050-A-G 11305374-A-G ***
22316844-G-T 20154958-G-T DYZ19 ***
22253536-A-T 20091650-A-T DYZ19 ***
22243373-T-A 20081487-T-A DYZ19 ***
22222600-C-G 20060714-C-G DYZ19 ***
13488746-C-T 11333070-C-T ***
13488700-C-T 11333024-C-T ***
13456658-G-A 11300982-G-A ***
28803783-T-A,G 26657636-T-A,G ***
58979997-C-A 56833850-C-A ***
7311601-T-C 7443560-T-C ***
18354236-GGAAAGAAAGAAA-G 16242356-GGAAAGAAAGAAA-G P6_Prx 13×GAAA***
2986337-C-A 3118296-C-A ***
22208994-A-G 20047108-A-G ***
17934203-T-A 15822323-T-A 13×A***
7078524-C-A 7210483-C-A ***
17196749-TAGAAAGAAAGAAAGAAAGAA-T 15084869-TAGAAAGAAAGAAAGAAAGAA-T 14×AGAA***
17020624-C-A 14908744-C-A ***
16019309-G-T 13907429-G-T ***
16019285-G-T 13907405-G-T ***
15223603-C-A 13111689-C-A ***
14561880-C-A 12450081-C-A ***
14526862-C-A 12415063-C-A ***
14513304-C-A 12401509-C-A ***
10664773-C-CCCATTCCATT ***
8678583-G-T 8810542-G-T ***
8611886-CAAA-C,CA 8743845-CAAA-C,CA 14×A***
5511529-C-A 5643488-C-A ***
9461009-C-A 9623400-C-A ***
4101050-C-A 4233009-C-A ***
3992042-C-A 4124001-C-A ***
2753733-C-A 2885692-C-A ***
2649530-C-A 2781489-C-A ***
2791289-G-T 2923248-G-T ***
18660199-C-A 16548319-C-A ***
16430254-C-A 14318374-C-A ***
56833610-A-G ***
3925808-C-A 4057767-C-A ***
16003026-G-T 13891146-G-T ***
10682522-CA-C ***
16552-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N1343871064061176889817763841
Kit: N134387958461778107907715315
Used in age calculations1064061178107907763841
Counts of SNPs2321
Variant counts last updated 2018-05-28 19:58:21.



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