Milligan
FTDNA: 235983, BigY2: 235983MDKA Birth:
ScotlandTree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
| Position | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 235983 | BigY2 235983 |
|---|---|---|---|---|---|---|---|---|
| hg19:Y:8470538-A-C hg38:Y:8602497-A-C | Y | Y | A* | |||||
| hg19:Y:16076209-A-C hg38:Y:13964329-A-C | Y | A* | ||||||
| hg19:Y:7017889-T-G hg38:Y:7149848-T-G | Y61384 | Y | ** | + | ||||
| hg19:Y:2680720-C-G hg38:Y:2812679-C-G | ** | ** | ||||||
| hg19:Y:27902197-C-T hg38:Y:25756050-C-T | P1_Y2 | 34×T | ** | |||||
| hg19:Y:16040952-A-C hg38:Y:13929072-A-C | ** | |||||||
| hg19:Y:23321854-T-G hg38:Y:21159968-T-G | M4934 | ** | ||||||
| hg19:Y:4271315-C-A hg38:Y:4403274-C-A | ** | |||||||
| hg19:Y:18008706-G-T hg38:Y:15896826-G-T | P7_Dst | ** | ||||||
| hg19:Y:2833178-CTTTTTTT-C hg38:Y:2965137-CTTTTTTT-C | 19×T | ** | ||||||
| hg19:Y:6920687-C-A hg38:Y:7052646-C-A | ** | |||||||
| hg19:Y:22485246-G-T hg38:Y:20323360-G-T | BY27283 | DYZ19 | ** | |||||
| hg19:Y:22485247-T-C hg38:Y:20323361-T-C | BY27284 | DYZ19 | ** | |||||
| hg38:Y:10962634-A-T | ** | |||||||
| hg19:Y:14517555-C-A hg38:Y:12405756-C-A | ** | |||||||
| hg19:Y:16021033-C-A hg38:Y:13909153-C-A | ** | |||||||
| hg19:Y:14825818-TTGC-T hg38:Y:12713885-TTGC-T | ** | |||||||
| hg19:Y:8020215-C-G hg38:Y:8152174-C-G | ** | |||||||
| hg19:Y:23061833-C-A hg38:Y:20899947-C-A | ** | |||||||
| hg19:Y:9424595-C-A hg38:Y:9586986-C-A | ** | |||||||
| hg19:Y:14764839-A-T hg38:Y:12652908-A-T | ** | |||||||
| hg19:Y:13512007-G-T hg38:Y:11356331-G-T | ** | |||||||
| hg38:Y:11025022-T-G | ** | |||||||
| hg19:Y:7111645-C-A hg38:Y:7243604-C-A | ** | |||||||
| hg19:Y:16427616-G-T hg38:Y:14315736-G-T | ** | |||||||
| hg38:Y:10842088-T-C | FT433664 | ** | ||||||
| hg19:Y:18728828-C-A hg38:Y:16616948-C-A | ** | |||||||
| hg19:Y:13273115-C-A hg38:Y:11117439-C-A | ** | |||||||
| hg38:Y:11025461-T-G | ** | |||||||
| hg19:Y:24530886-A-G hg38:Y:22384739-A-G | P3_t2 | ** | ||||||
| hg19:Y:22580068-CTTTTTT-C hg38:Y:20418182-CTTTTTT-C | 19×T | ** | ||||||
| hg38:Y:10885164-T-C | ** | |||||||
| hg38:Y:10866065-T-A | ** | |||||||
| hg38:Y:10767305-C-A | ** | |||||||
| hg19:Y:19125673-C-G hg38:Y:17013793-C-G | ** | |||||||
| hg19:Y:7470634-T-A hg38:Y:7602593-T-A | IR1_L | ** | ||||||
| hg19:Y:13993587-C-A hg38:Y:11872881-C-A | ** | |||||||
| hg38:Y:11025409-T-G | ** | |||||||
| hg38:Y:11025414-C-A | ** | |||||||
| hg38:Y:11025443-CCA-C | ** | |||||||
| hg38:Y:11025450-ACTC-A | ** | |||||||
| hg38:Y:11025460-A-C | ** | |||||||
| hg19:Y:6816540-T-C hg38:Y:6948499-T-C | ** | |||||||
| hg19:Y:8709922-C-A hg38:Y:8841881-C-A | ** | |||||||
| hg19:Y:14483518-A-C hg38:Y:12362787-A-C | ** | |||||||
| hg19:Y:4951524-C-A hg38:Y:5083483-C-A | ** | |||||||
| hg38:Y:11675631-G-A | DYZ17 | ** | ||||||
| hg19:Y:14295163-C-T hg38:Y:12174457-C-T | 13×T | ** | ||||||
| hg19:Y:14246774-C-A hg38:Y:12126068-C-A | ** | |||||||
| hg19:Y:4757739-C-A hg38:Y:4889698-C-A | ** | |||||||
| hg19:Y:18869109-A-G hg38:Y:16757229-A-G | ** | |||||||
| hg19:Y:14053451-G-GA hg38:Y:11932745-G-GA | 8×A | ** | ||||||
| hg38:Y:10764590-C-T | ** | |||||||
| hg19:Y:13193977-C-A hg38:Y:11038301-C-A | ** | |||||||
| hg38:Y:11033837-ACTCTG-A | ** | |||||||
| hg38:Y:11666341-T-A | FT191162 | DYZ17 | ** | |||||
| hg38:Y:10653256-C-A | ** | |||||||
| hg38:Y:11007427-G-C | ** | |||||||
| hg19:Y:3833474-T-C hg38:Y:3965433-T-C | FTA42515 | ** | ||||||
| hg19:Y:16635876-C-A hg38:Y:14523996-C-A | ** | |||||||
| hg19:Y:21235150-C-A hg38:Y:19073264-C-A | ** | |||||||
| hg19:Y:9040925-A-AT hg38:Y:9203316-A-AT | 17×AT | ** | ||||||
| hg19:Y:14492829-G-T hg38:Y:12381026-G-T | ** | |||||||
| hg38:Y:11647913-C-A | DYZ17 | ** | ||||||
| hg19:Y:14229907-C-A hg38:Y:12109201-C-A | ** | |||||||
| hg19:Y:6490704-C-A hg38:Y:6622663-C-A | ** | |||||||
| hg19:Y:14100935-G-T hg38:Y:11980229-G-T | ** | |||||||
| hg19:Y:19586519-T-C hg38:Y:17474639-T-C | P5_Prx | ** | ||||||
| hg19:Y:16016993-T-C hg38:Y:13905113-T-C | ** | |||||||
| hg19:Y:2693303-C-A hg38:Y:2825262-C-A | ** | |||||||
| hg19:Y:15623369-C-A hg38:Y:13511489-C-A | ** | |||||||
| hg38:Y:10885176-G-A | ** | |||||||
| hg19:Y:14619733-C-A hg38:Y:12507931-C-A | ** | |||||||
| hg19:Y:17465046-C-A hg38:Y:15353166-C-A | ** | |||||||
| hg19:Y:24466428-A-G hg38:Y:22320281-A-G | ** | |||||||
| hg19:Y:13859974-G-A hg38:Y:11739268-G-A | DYZ17 | ** | ||||||
| hg19:Y:6816536-C-A hg38:Y:6948495-C-A | ** | |||||||
| hg38:Y:10876928-C-A | FT229991 | ** | ||||||
| hg19:Y:2774813-C-A hg38:Y:2906772-C-A | ** | |||||||
| hg38:Y:10885189-T-C | ** | |||||||
| hg19:Y:28581630-GATATATATATATAT-G hg38:Y:26435483-GATATATATATATAT-G | 19×AT | ** | ||||||
| hg19:Y:7258612-C-A hg38:Y:7390571-C-A | ** | |||||||
| hg38:Y:10884721-C-A | ** | |||||||
| hg19:Y:5999411-C-A hg38:Y:6131370-C-A | ** | |||||||
| hg19:Y:4872469-C-A hg38:Y:5004428-C-A | ** | |||||||
| hg19:Y:13927914-C-A hg38:Y:11807208-C-A | ** | |||||||
| hg19:Y:6510259-C-A hg38:Y:6642218-C-A | ** | |||||||
| hg19:Y:18201569-A-C hg38:Y:16089689-A-C | ** | |||||||
| hg38:Y:10848157-C-A | ** | |||||||
| hg19:Y:14315622-G-C hg38:Y:12194916-G-C | ** | |||||||
| hg19:Y:14483531-T-C hg38:Y:12362800-T-C | ** | |||||||
| hg19:Y:14473005-C-A hg38:Y:12352274-C-A | ** | |||||||
| hg19:Y:6523806-C-A hg38:Y:6655765-C-A | ** | |||||||
| hg19:Y:22010350-C-A hg38:Y:19848464-C-A | ** | |||||||
| hg19:Y:15128041-T-C hg38:Y:13016128-T-C | ** | |||||||
| hg19:Y:5205287-A-AT hg38:Y:5337246-A-AT | 9×T | ** | ||||||
| hg19:Y:15128018-T-C hg38:Y:13016105-T-C | ** | |||||||
| hg19:Y:5576665-C-A hg38:Y:5708624-C-A | ** | |||||||
| hg19:Y:26047215-T-C hg38:Y:23901068-T-C | P1_Y1 | ** | ||||||
| hg19:Y:3833456-A-G hg38:Y:3965415-A-G | ** | |||||||
| hg19:Y:3833463-A-T hg38:Y:3965422-A-T | ** | |||||||
| hg19:Y:17218300-C-CTT hg38:Y:15106420-C-CTT | 16×T | ** | ||||||
| hg38:Y:10760389-C-T | ** | |||||||
| hg38:Y:10760390-C-G | ** | |||||||
| hg19:Y:18037957-C-A hg38:Y:15926077-C-A | ** | |||||||
| hg19:Y:2680704-G-T hg38:Y:2812663-G-T | ** | |||||||
| hg19:Y:2680710-G-T hg38:Y:2812669-G-T | ** | |||||||
| hg19:Y:2680712-G-T hg38:Y:2812671-G-T | ** | |||||||
| hg19:Y:10039956-C-A hg38:Y:10202347-C-A | ** | |||||||
| hg19:Y:15220995-C-A hg38:Y:13109081-C-A | ** | |||||||
| hg19:Y:17928934-C-A hg38:Y:15817054-C-A | ** | |||||||
| hg38:Y:10881739-C-A | ** | |||||||
| hg19:Y:20793536-A-C hg38:Y:18631650-A-C | P4_Prx | ** | ||||||
| hg19:Y:7456724-CAAA-C hg38:Y:7588683-CAAA-C | IR1_L | 15×A | ** | |||||
| hg38:Y:10798061-C-A | ** | |||||||
| hg38:Y:11024980-C-A | ** | |||||||
| hg38:Y:11024989-G-A | ** | |||||||
| hg38:Y:11024995-C-T | ** | |||||||
| hg19:Y:18795256-C-T hg38:Y:16683376-C-T | ** | |||||||
| hg38:Y:11648221-G-T | DYZ17 | ** | ||||||
| hg19:Y:21141387-G-A hg38:Y:18979501-G-A | ** | |||||||
| hg19:Y:21133518-C-A hg38:Y:18971632-C-A | ** | |||||||
| hg38:Y:11014011-G-T | ** | |||||||
| hg19:Y:7050430-C-A hg38:Y:7182389-C-A | ** | |||||||
| hg19:Y:6699108-G-A hg38:Y:6831067-G-A | FT184961 | ** | ||||||
| hg19:Y:18659809-C-A hg38:Y:16547929-C-A | ** | |||||||
| hg19:Y:18856209-T-C hg38:Y:16744329-T-C | ** | |||||||
| hg19:Y:18856210-G-A hg38:Y:16744330-G-A | ** | |||||||
| hg19:Y:2718923-C-T hg38:Y:2850882-C-T | ** | |||||||
| hg38:Y:10761313-C-A | ** | |||||||
| hg19:Y:8216514-C-T hg38:Y:8348473-C-T | ** | |||||||
| hg38:Y:56842389-G-T | ** | |||||||
| hg19:Y:5620811-C-A hg38:Y:5752770-C-A | ** | |||||||
| hg19:Y:24293019-T-TC hg38:Y:22146872-T-TC | P3_t1 | ** | ||||||
| hg19:Y:17933973-T-A hg38:Y:15822093-T-A | ** | |||||||
| hg19:Y:8178725-C-A hg38:Y:8310684-C-A | ** | |||||||
| hg19:Y:14000401-C-A hg38:Y:11879695-C-A | ** | |||||||
| hg19:Y:2697430-C-A hg38:Y:2829389-C-A | ** | |||||||
| hg38:Y:10969350-C-A | ** | |||||||
| hg38:Y:11011296-C-A | ** | |||||||
| hg19:Y:14388650-G-A hg38:Y:12267946-G-A | ** | |||||||
| hg38:Y:11030182-C-A | ** | |||||||
| hg38:Y:10971866-C-A | ** | |||||||
| hg19:Y:28777882-C-A hg38:Y:26631735-C-A | ** | |||||||
| hg19:Y:16422115-C-A hg38:Y:14310235-C-A | ** | |||||||
| hg19:Y:24530885-C-T hg38:Y:22384738-C-T | P3_t2 | ** | ||||||
| hg38:Y:10900424-G-C | ** | |||||||
| hg38:Y:10672756-C-A | ** | |||||||
| hg19:Y:18071928-C-A hg38:Y:15960048-C-A | ** | |||||||
| hg19:Y:14549668-C-A hg38:Y:12437869-C-A | ** | |||||||
| hg19:Y:27584574-G-T hg38:Y:25438427-G-T | P1_Y2 | ** | ||||||
| hg19:Y:14427068-C-A hg38:Y:12306343-C-A | ** | |||||||
| hg19:Y:14100955-G-T hg38:Y:11980249-G-T | ** | |||||||
| hg19:Y:15066136-C-A hg38:Y:12954228-C-A | ** | |||||||
| hg19:Y:7140527-C-A hg38:Y:7272486-C-A | ** | |||||||
| hg19:Y:18008713-A-G hg38:Y:15896833-A-G | P7_Dst | ** | ||||||
| hg19:Y:23198810-C-A hg38:Y:21036924-C-A | ** | |||||||
| hg19:Y:22774603-C-A hg38:Y:20612717-C-A | ** | |||||||
| hg19:Y:4178413-C-A hg38:Y:4310372-C-A | ** | |||||||
| hg19:Y:14618713-C-A hg38:Y:12506911-C-A | ** | |||||||
| hg19:Y:15648866-C-A hg38:Y:13536986-C-A | ** | |||||||
| hg19:Y:6699117-T-C hg38:Y:6831076-T-C | ** | |||||||
| hg19:Y:2787408-G-A hg38:Y:2919367-G-A | ** | |||||||
| hg38:Y:10764595-C-T | ** | |||||||
| hg19:Y:18901279-C-A hg38:Y:16789399-C-A | ** | |||||||
| hg19:Y:16720401-G-T hg38:Y:14608521-G-T | ** | |||||||
| hg38:Y:56837176-C-A | ** | |||||||
| hg19:Y:2787407-G-A hg38:Y:2919366-G-A | ** | |||||||
| hg19:Y:13463957-C-A hg38:Y:11308281-C-A | ** | |||||||
| hg38:Y:10657187-C-A | ** | |||||||
| hg19:Y:15533192-C-A hg38:Y:13421312-C-A | ** | |||||||
| hg38:Y:11665554-G-T | DYZ17 | ** | ||||||
| hg19:Y:27127657-T-A hg38:Y:24981510-T-A | P1_g3 | 7×CTTC | ** | |||||
| hg19:Y:19249560-C-A hg38:Y:17137680-C-A | ** | |||||||
| hg19:Y:22427515-T-C hg38:Y:20265629-T-C | DYZ19 | ** | ||||||
| hg38:Y:10862125-C-A | ** | |||||||
| hg19:Y:14768461-A-T hg38:Y:12656530-A-T | ** | |||||||
| hg38:Y:10793195-C-A | ** | |||||||
| hg38:Y:10886965-C-A | ** | |||||||
| hg38:Y:10809608-C-A | ** | |||||||
| hg19:Y:22203978-T-C hg38:Y:20042092-T-C | ** | |||||||
| hg19:Y:14052738-C-A hg38:Y:11932032-C-A | ** | |||||||
| hg38:Y:10955402-A-G | ** | |||||||
| hg19:Y:15823627-C-A hg38:Y:13711747-C-A | ** | |||||||
| hg19:Y:19530499-T-C hg38:Y:17418619-T-C | ** | |||||||
| hg19:Y:16828930-C-A hg38:Y:14717050-C-A | ** | |||||||
| hg19:Y:6699118-G-C hg38:Y:6831077-G-C | ** | |||||||
| hg19:Y:15940167-C-A hg38:Y:13828287-C-A | ** | |||||||
| hg19:Y:18730348-C-A hg38:Y:16618468-C-A | ** | |||||||
| hg19:Y:2888866-GT-G hg38:Y:3020825-GT-G | ** | |||||||
| hg19:Y:22018190-C-A hg38:Y:19856304-C-A | ** | |||||||
| hg38:Y:10859310-C-A | ** | |||||||
| hg38:Y:10954881-T-C | ** | |||||||
| hg38:Y:10817965-C-A | ** | |||||||
| hg19:Y:19340356-C-A hg38:Y:17228476-C-A | ** | |||||||
| hg19:Y:3285216-G-T hg38:Y:3417175-G-T | ** | |||||||
| hg19:Y:5967840-C-CA hg38:Y:6099799-C-CA | ** | |||||||
| hg19:Y:2680718-C-A hg38:Y:2812677-C-A | ** | |||||||
| hg19:Y:3833475-G-A hg38:Y:3965434-G-A | ** | |||||||
| hg19:Y:8792958-C-A hg38:Y:8924917-C-A | FT167950 | ** | ||||||
| hg19:Y:28607693-C-A hg38:Y:26461546-C-A | ** | |||||||
| hg19:Y:5524858-C-A hg38:Y:5656817-C-A | ** | |||||||
| hg19:Y:2680725-A-T hg38:Y:2812684-A-T | ** | |||||||
| hg38:Y2:24301-T-C | ** | |||||||
| hg19:Y:18756128-C-A hg38:Y:16644248-C-A | ** | |||||||
| hg38:Y:10859420-C-A | ** | |||||||
| hg19:Y:7044298-C-A hg38:Y:7176257-C-A | ** | |||||||
| hg19:Y:9451334-C-A hg38:Y:9613725-C-A | ** | |||||||
| hg19:Y:20640254-A-G hg38:Y:18478368-A-G | P4_Prx | ** | ||||||
| hg19:Y:6699123-C-T hg38:Y:6831082-C-T | FT409949 | ** | ||||||
| hg19:Y:24359531-C-A hg38:Y:22213384-C-A | ** | |||||||
| hg19:Y:14919247-C-A hg38:Y:12807314-C-A | ** | |||||||
| hg19:Y:16001044-C-A hg38:Y:13889164-C-A | ** | |||||||
| hg19:Y:6923070-C-A hg38:Y:7055029-C-A | ** | |||||||
| hg19:Y:14570945-G-T hg38:Y:12459145-G-T | ** | |||||||
| hg19:Y:23522526-C-A hg38:Y:21360640-C-A | ** | |||||||
| hg19:Y:2684095-A-C hg38:Y:2816054-A-C | ** | |||||||
| hg19:Y:7984498-G-A hg38:Y:8116457-G-A | ** | |||||||
| hg38:Y:10647581-A-T | ** | |||||||
| hg38:Y:10983710-C-A | ** | |||||||
| hg38:Y:11015915-TTCCACTGCAC-T | ** | |||||||
| hg19:Y:17475180-G-C hg38:Y:15363300-G-C | ** | |||||||
| hg38:Y:10982113-C-A | ** | |||||||
| hg19:Y:15081136-G-T hg38:Y:12969226-G-T | ** | |||||||
| hg19:Y:22485239-G-A hg38:Y:20323353-G-A | BY27282 | DYZ19 | ** | |||||
| hg19:Y:19204259-C-A hg38:Y:17092379-C-A | ** | |||||||
| hg19:Y:18994517-C-A hg38:Y:16882637-C-A | ** | |||||||
| hg19:Y:23260934-C-T hg38:Y:21099048-C-T | ** | |||||||
| hg38:Y:10754975-T-C | ** | |||||||
| hg19:Y:14273978-C-A hg38:Y:12153272-C-A | ** | |||||||
| hg19:Y:18972812-C-A hg38:Y:16860932-C-A | ** | |||||||
| hg19:Y:28708884-C-A hg38:Y:26562737-C-A | ** | |||||||
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| hg19:Y:4872523-T-G hg38:Y:5004482-T-G | ** | |||||||
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| hg38:Y:10647526-A-C | ** | |||||||
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| hg38:Y:10647557-T-C | ** | |||||||
| hg38:Y:10647576-C-T | ** | |||||||
| hg38:Y:10647582-A-T | ** | |||||||
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| hg38:Y:10677080-G-A | ** | |||||||
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| hg38:Y:10764580-C-CACTCGCCTTG | ** | |||||||
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| hg38:Y:10792818-C-A | ** | |||||||
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| hg38:Y:10845963-T-A | ** | |||||||
| hg38:Y:10847720-T-G | ** | |||||||
| hg38:Y:10851241-T-C | ** | |||||||
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| hg38:Y:10885190-T-TG | ** | |||||||
| hg38:Y:10885190-T-TC | ** | |||||||
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| hg38:Y:10900618-T-C | ** | |||||||
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| hg38:Y:10958490-G-C | ** | |||||||
| hg38:Y:10992789-C-A | ** | |||||||
| hg38:Y:10997432-C-A | ** | |||||||
| hg38:Y:11006876-C-T | ** | |||||||
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| hg38:Y:11667352-T-C | DYZ17 | ** | ||||||
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| hg19:Y:14768450-G-A hg38:Y:12656519-G-A | ** | |||||||
| hg19:Y:14768451-A-G hg38:Y:12656520-A-G | ** | |||||||
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| hg19:Y:17285192-AC-T hg38:Y:15173312-AC-T | ** | |||||||
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| hg19:Y:17285216-T-G hg38:Y:15173336-T-G | ** | |||||||
| hg19:Y:17524221-C-A hg38:Y:15412341-C-A | ** | |||||||
| hg19:Y:17588471-G-A hg38:Y:15476591-G-A | ** | |||||||
| hg19:Y:17597824-T-A hg38:Y:15485944-T-A | ** | |||||||
| hg19:Y:17601038-T-G hg38:Y:15489158-T-G | ** | |||||||
| hg19:Y:17840078-T-C hg38:Y:15728198-T-C | ** | |||||||
| hg19:Y:17859745-G-T hg38:Y:15747865-G-T | ** | |||||||
| hg19:Y:17859978-A-G hg38:Y:15748098-A-G | ** | |||||||
| hg19:Y:17933984-C-A hg38:Y:15822104-C-A | ** | |||||||
| hg19:Y:18008669-T-C hg38:Y:15896789-T-C | P7_Dst | ** | ||||||
| hg19:Y:18056011-A-G hg38:Y:15944131-A-G | ** | |||||||
| hg19:Y:18056031-C-A hg38:Y:15944151-C-A | ** | |||||||
| hg19:Y:18143994-C-T hg38:Y:16032114-C-T | ** | |||||||
| hg19:Y:18158067-T-C hg38:Y:16046187-T-C | ** | |||||||
| hg19:Y:18158137-C-A hg38:Y:16046257-C-A | ** | |||||||
| hg19:Y:18242063-A-G hg38:Y:16130183-A-G | ** | |||||||
| hg19:Y:18355280-T-C hg38:Y:16243400-T-C | P6_Prx | ** | ||||||
| hg19:Y:18378865-A-T hg38:Y:16266985-A-T | P6_Prx | ** | ||||||
| hg19:Y:18381893-T-A hg38:Y:16270013-T-A | P6_Gap | ** | ||||||
| hg19:Y:18412228-A-G hg38:Y:16300348-A-G | P6_Gap | ** | ||||||
| hg19:Y:18518231-C-A hg38:Y:16406351-C-A | FTB31504 | P6_Dst | ** | |||||
| hg19:Y:18793514-C-A hg38:Y:16681634-C-A | ** | |||||||
| hg19:Y:18795236-T-C hg38:Y:16683356-T-C | ** | |||||||
| hg19:Y:18853487-C-G hg38:Y:16741607-C-G | ** | |||||||
| hg19:Y:18869085-T-C hg38:Y:16757205-T-C | ** | |||||||
| hg19:Y:18898944-T-G hg38:Y:16787064-T-G | ** | |||||||
| hg19:Y:18956072-T-C hg38:Y:16844192-T-C | ** | |||||||
| hg19:Y:19059913-C-A hg38:Y:16948033-C-A | ** | |||||||
| hg19:Y:19097283-C-A hg38:Y:16985403-C-A | ** | |||||||
| hg19:Y:19254421-C-T hg38:Y:17142541-C-T | ** | |||||||
| hg19:Y:19254430-T-C hg38:Y:17142550-T-C | ** | |||||||
| hg19:Y:19254436-CA-C hg38:Y:17142556-CA-C | ** | |||||||
| hg19:Y:19412480-C-A hg38:Y:17300600-C-A | ** | |||||||
| hg19:Y:19530485-T-C hg38:Y:17418605-T-C | ** | |||||||
| hg19:Y:19530492-G-A hg38:Y:17418612-G-A | ** | |||||||
| hg19:Y:19551849-C-A hg38:Y:17439969-C-A | ** | |||||||
| hg19:Y:20659339-A-G hg38:Y:18497453-A-G | P4_Prx | ** | ||||||
| hg19:Y:20793538-C-CT hg38:Y:18631652-C-CT | P4_Prx | ** | ||||||
| hg19:Y:20793547-A-T hg38:Y:18631661-A-T | P4_Prx | ** | ||||||
| hg19:Y:20809851-G-T hg38:Y:18647965-G-T | P4_Gap | ** | ||||||
| hg19:Y:20815697-A-T hg38:Y:18653811-A-T | P4_Gap | ** | ||||||
| hg19:Y:20989299-T-A hg38:Y:18827413-T-A | P4_Dst | ** | ||||||
| hg19:Y:21108368-A-G hg38:Y:18946482-A-G | ** | |||||||
| hg19:Y:21195914-G-A hg38:Y:19034028-G-A | ** | |||||||
| hg19:Y:21196718-C-G hg38:Y:19034832-C-G | ** | |||||||
| hg19:Y:21245695-G-T hg38:Y:19083809-G-T | ** | |||||||
| hg19:Y:21299383-C-A hg38:Y:19137497-C-A | ** | |||||||
| hg19:Y:21386406-C-A hg38:Y:19224520-C-A | ** | |||||||
| hg19:Y:21393604-T-G hg38:Y:19231718-T-G | ** | |||||||
| hg19:Y:21556878-C-A hg38:Y:19394992-C-A | ** | |||||||
| hg19:Y:21670791-C-A hg38:Y:19508905-C-A | ** | |||||||
| hg19:Y:22023405-C-T hg38:Y:19861519-C-T | ** | |||||||
| hg19:Y:22203965-T-A hg38:Y:20042079-T-A | ** | |||||||
| hg19:Y:22241622-G-T hg38:Y:20079736-G-T | DYZ19 | ** | ||||||
| hg19:Y:22269683-A-G hg38:Y:20107797-A-G | DYZ19 | ** | ||||||
| hg19:Y:22281941-C-CAAGA hg38:Y:20120055-C-CAAGA | DYZ19 | ** | ||||||
| hg19:Y:22448872-G-A hg38:Y:20286986-G-A | DYZ19 | ** | ||||||
| hg19:Y:22485233-G-T hg38:Y:20323347-G-T | DYZ19 | ** | ||||||
| hg19:Y:22540562-A-G hg38:Y:20378676-A-G | ** | |||||||
| hg19:Y:22564674-C-A hg38:Y:20402788-C-A | ** | |||||||
| hg19:Y:22836744-T-C hg38:Y:20674858-T-C | ** | |||||||
| hg19:Y:22851528-C-A hg38:Y:20689642-C-A | ** | |||||||
| hg19:Y:22864451-GGTGAAACC-G hg38:Y:20702565-GGTGAAACC-G | ** | |||||||
| hg19:Y:22874377-A-G hg38:Y:20712491-A-G | ** | |||||||
| hg19:Y:22963504-A-G hg38:Y:20801618-A-G | ** | |||||||
| hg19:Y:22997579-A-T hg38:Y:20835693-A-T | ** | |||||||
| hg19:Y:23005669-G-A hg38:Y:20843783-G-A | ** | |||||||
| hg19:Y:23047559-T-C hg38:Y:20885673-T-C | ** | |||||||
| hg19:Y:23126676-T-C hg38:Y:20964790-T-C | ** | |||||||
| hg19:Y:23272553-T-A hg38:Y:21110667-T-A | ** | |||||||
| hg19:Y:24244474-C-A hg38:Y:22098327-C-A | P3_b1 | ** | ||||||
| hg19:Y:24530901-A-ACC hg38:Y:22384754-A-ACC | P3_t2 | ** | ||||||
| hg19:Y:26138841-G-C hg38:Y:23992694-G-C | P1_Y1 | ** | ||||||
| hg19:Y:26409368-G-A hg38:Y:24263221-G-A | P1_Y1 | ** | ||||||
| hg19:Y:27583078-T-C hg38:Y:25436931-T-C | P1_Y2 | ** | ||||||
| hg19:Y:27633771-T-G hg38:Y:25487624-T-G | P1_Y2 | ** | ||||||
| hg19:Y:27756330-A-T hg38:Y:25610183-A-T | P1_Y2 | ** | ||||||
| hg19:Y:27861573-G-T hg38:Y:25715426-G-T | P1_Y2 | ** | ||||||
| hg19:Y:28492479-T-A hg38:Y:26346332-T-A | ** | |||||||
| hg19:Y:28535431-C-A hg38:Y:26389284-C-A | ** | |||||||
| hg19:Y:28537920-T-A hg38:Y:26391773-T-A | ** | |||||||
| hg19:Y:28566160-C-A hg38:Y:26420013-C-A | ** | |||||||
| hg19:Y:28589368-A-G hg38:Y:26443221-A-G | ** | |||||||
| hg19:Y:28640258-A-G hg38:Y:26494111-A-G | ** | |||||||
| hg19:Y:28641134-A-T hg38:Y:26494987-A-T | FT258033 | ** | ||||||
| hg19:Y:28660768-G-T hg38:Y:26514621-G-T | ** | |||||||
| hg19:Y:28675424-G-T hg38:Y:26529277-G-T | ** | |||||||
| hg19:Y:28697931-C-A hg38:Y:26551784-C-A | ** | |||||||
| hg19:Y:28744784-G-A hg38:Y:26598637-G-A | ** | |||||||
| hg19:Y:28744890-T-G hg38:Y:26598743-T-G | ** | |||||||
| hg19:Y:28748815-T-C hg38:Y:26602668-T-C | ** | |||||||
| hg19:Y:28759757-C-T hg38:Y:26613610-C-T | ** | |||||||
| hg19:Y:28762517-C-T hg38:Y:26616370-C-T | ** | |||||||
| hg38:Y:56843316-C-G | ** | |||||||
| hg38:Y:56844379-C-A | ** | |||||||
| hg38:Y:56847466-T-C | ** | |||||||
| hg38:Y2:22984-G-A | ** | |||||||
| hg38:Y2:36568-C-A | ** | |||||||
| hg38:Y2:36583-G-C | ** | |||||||
| hg19:Y:13472425-C-A hg38:Y:11316749-C-A | *** | |||||||
| hg19:Y:13138193-C-T hg38:Y:10627679-C-T | *** | |||||||
| hg19:Y:15562728-T-A hg38:Y:13450848-T-A | *** | |||||||
| hg19:Y:21163403-C-A hg38:Y:19001517-C-A | *** | |||||||
| hg19:Y:18204978-C-A hg38:Y:16093098-C-A | *** | |||||||
| hg19:Y:58982868-T-A hg38:Y:56836721-T-A | *** | |||||||
| hg19:Y:24944923-C-T hg38:Y:22798776-C-T | g1 | *** | ||||||
| hg19:Y:13468246-C-T hg38:Y:11312570-C-T | *** | |||||||
| hg19:Y:13598656-C-A hg38:Y:11442980-C-A | *** | |||||||
| hg38:Y:10980729-C-T | *** | |||||||
| hg38:Y:10937389-C-A | *** | |||||||
| hg19:Y:8877067-A-T hg38:Y:9009026-A-T | *** | |||||||
| hg38:Y:10828826-A-ACCATTCCATT | *** | |||||||
| hg19:Y:13468306-A-T hg38:Y:11312630-A-T | *** | |||||||
| hg19:Y:17535589-C-A hg38:Y:15423709-C-A | *** | |||||||
| hg38:Y:10987183-A-AA,T | *** | |||||||
| hg19:Y:7200045-C-A hg38:Y:7332004-C-A | *** | |||||||
| hg38:Y:10997760-A-C | *** | |||||||
| hg19:Y:4447492-C-A hg38:Y:4579451-C-A | *** | |||||||
| hg19:Y:6693600-C-A hg38:Y:6825559-C-A | *** | |||||||
| hg19:Y:19415154-C-A hg38:Y:17303274-C-A | *** | |||||||
| hg19:Y:2844378-T-C hg38:Y:2976337-T-C | *** | |||||||
| hg19:Y:2759413-A-TTG hg38:Y:2891372-A-TTG | *** | |||||||
| hg19:Y:2803760-C-A hg38:Y:2935719-C-A | *** | |||||||
| hg19:Y:2881584-C-T hg38:Y:3013543-C-T | *** | |||||||
| hg19:Y:2884663-C-A hg38:Y:3016622-C-A | *** | |||||||
| hg19:Y:3334457-C-T hg38:Y:3466416-C-T | *** | |||||||
| hg19:Y:6434921-TAAAAA-T,TAAA hg38:Y:6566880-TAAAAA-T,TAAA | 20×A | *** | ||||||
| hg19:Y:6644662-T-A hg38:Y:6776621-T-A | *** | |||||||
| hg19:Y:6773570-C-A hg38:Y:6905529-C-A | *** | |||||||
| hg19:Y:6900930-T-C hg38:Y:7032889-T-C | *** | |||||||
| hg19:Y:7416879-T-C hg38:Y:7548838-T-C | *** | |||||||
| hg19:Y:7636010-TAAAAAA-T hg38:Y:7767969-TAAAAAA-T | 15×A | *** | ||||||
| hg19:Y:8124898-G-A hg38:Y:8256857-G-A | *** | |||||||
| hg19:Y:8139902-G-T hg38:Y:8271861-G-T | *** | |||||||
| hg19:Y:8720775-C-A hg38:Y:8852734-C-A | *** | |||||||
| hg19:Y:9945471-A-G hg38:Y:10107862-A-G | *** | |||||||
| hg38:Y:10924319-C-A | *** | |||||||
| hg19:Y:13194358-T-C hg38:Y:11038682-T-C | *** | |||||||
| hg19:Y:13462164-C-A hg38:Y:11306488-C-A | *** | |||||||
| hg19:Y:13474627-A-AG hg38:Y:11318951-A-AG | *** | |||||||
| hg19:Y:13474629-CT-C hg38:Y:11318953-CT-C | *** | |||||||
| hg19:Y:13861219-G-T hg38:Y:11740513-G-T | DYZ17 | *** | ||||||
| hg19:Y:15605232-A-T hg38:Y:13493352-A-T | *** | |||||||
| hg19:Y:15698679-C-A hg38:Y:13586799-C-A | *** | |||||||
| hg19:Y:15698692-T-C hg38:Y:13586812-T-C | *** | |||||||
| hg19:Y:17201762-CTTT-C,CT hg38:Y:15089882-CTTT-C,CT | 16×T | *** | ||||||
| hg19:Y:17729493-T-C hg38:Y:15617613-T-C | *** | |||||||
| hg19:Y:18872228-C-A hg38:Y:16760348-C-A | *** | |||||||
| hg19:Y:21248414-C-A hg38:Y:19086528-C-A | *** | |||||||
| hg19:Y:21589749-C-A hg38:Y:19427863-C-A | *** | |||||||
| hg19:Y:22201783-C-A hg38:Y:20039897-C-A | *** | |||||||
| hg19:Y:23427058-T-C hg38:Y:21265172-T-C | *** | |||||||
| hg19:Y:23529125-C-A hg38:Y:21367239-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
| All | McDonald | YFull | |
| Kit: 235983 | 10780981 | 7823790 | 7913142 |
| Kit: 235983 | 9728744 | 7958785 | 7880085 |
| Used in age calculations | 10780981 | 7958785 | 7913142 |
| Counts of SNPs | 3 | 1 |
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