MacFarlane

BigY3: 273077, BigY2: 273077, FTDNA: 273077
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF63/S522 > CTS6919 > A92 > Z16506 > FT13525 > BY674 > FT64717 > BY7788 > BY7781

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
273077		BigY2
273077		FTDNA
273077
20055522-G-T 17943642-G-T P5_Prx A*A****
26072204-A-T 23926057-A-T P1_Y1 A*A****
25941407-C-T 23795260-C-T P1_Y1 A*
13671755-G-T 11516079-G-T BY87849 +++
7764453-AT-A 7896412-AT-A 9×T+
7239209-C-T 7371168-C-T FT201000 Y+
13809819-G-T 11689113-G-T **
14227619-C-A 12106913-C-A **
8078394-G-T 8210353-G-T **
22601643-C-T 20439757-C-T **
14102109-C-A 11981403-C-A BY18153 **
5126164-C-A 5258123-C-A **
15928726-G-T 13816846-G-T **
13857625-C-A 11736919-C-A **
21091036-C-A 18929150-C-A **
4213169-C-T 4345128-C-T **
16783613-C-A 14671733-C-A **
21946424-G-A 19784538-G-A **
3437117-T-TA 3569076-T-TA 9×A**
4505414-A-T 4637373-A-T 22×T**
5601618-C-A 5733577-C-A **
18147556-G-T 16035676-G-T **
22425345-C-A 20263459-C-A DYZ19 **
22843776-C-A 20681890-C-A FTB13198 **
10799514-T-A **
16214110-C-A 14102230-C-A **
22880785-C-A 20718899-C-A **
7110475-C-A 7242434-C-A **
15231004-T-G 13119090-T-G **
14785588-C-A 12673658-C-A **
24513675-C-A 22367528-C-A **
16071389-G-A 13959509-G-A **
8408478-G-A 8540437-G-A **
15116474-G-T 13004561-G-T **
10971893-A-T **
17874234-C-A 15762354-C-A **
3836788-C-A 3968747-C-A **
18585616-C-A 16473736-C-A **
26055552-C-A 23909405-C-A P1_Y1 **
19293637-G-A 17181757-G-A **
19187415-C-G 17075535-C-G **
10973443-G-T **
10935602-C-A **
10971967-C-T **
10930051-C-A **
17167918-C-A 15056038-C-A **
15198872-C-A 13086958-C-A **
3032603-C-A 3164562-C-A **
14274085-C-A 12153379-C-A **
28775310-C-A 26629163-C-A **
16739450-C-A 14627570-C-A **
28505319-G-T 26359172-G-T **
15733494-A-G 13621614-A-G **
2785216-C-A 2917175-C-A **
10952311-C-A **
11658452-C-A **
9221659-TCA-T 9384050-TCA-T **
22880794-C-A 20718908-C-A **
10999880-A-C **
5937274-A-T 6069233-A-T **
17916661-C-A 15804781-C-A **
8911717-G-T 9043676-G-T **
4419957-G-T 4551916-G-T **
19924587-C-A 17812707-C-A P5_Prx **
16783365-C-A 14671485-C-A **
3275810-C-A 3407769-C-A **
14511436-C-A 12399641-C-A **
4937066-C-A 5069025-C-A **
14493621-C-A 12381818-C-A **
18147551-G-C 16035671-G-C **
21367236-C-A 19205350-C-A **
19066040-C-A 16954160-C-A **
8216423-G-TT 8348382-G-TT **
16465893-C-A 14354013-C-A **
17367628-C-A 15255748-C-A **
10859891-C-A **
10764465-G-T **
15882059-A-G 13770179-A-G **
9231763-T-C 9394154-T-C **
19346688-C-A 17234808-C-A **
15323496-C-A 13211614-C-A **
18317611-G-T 16205731-G-T P6_Prx **
4466650-C-A 4598609-C-A **
17158993-TTG-T 15047113-TTG-T **
13821450-A-T 11700744-A-T **
4969975-G-T 5101934-G-T **
10821843-A-C **
3849435-C-A 3981394-C-A **
17929331-G-T 15817451-G-T **
11002166-G-T **
16451610-C-A 14339730-C-A **
3660426-G-T 3792385-G-T **
10663474-A-C **
10663479-G-C **
17038371-C-A 14926491-C-A **
28536206-C-A 26390059-C-A **
3627669-GAGAA-G 3759628-GAGAA-G 5×AGAA**
21015093-GGAA-G 18853207-GGAA-G P4_Dst **
21015098-GA-G 18853212-GA-G P4_Dst **
16833340-C-A 14721460-C-A **
3476172-C-A 3608131-C-A **
7623502-C-A 7755461-C-A **
14339459-C-A 12218754-C-A **
16410158-C-A 14298278-C-A **
10942953-G-T **
5586020-C-A 5717979-C-A **
5830187-C-A 5962146-C-A **
15655620-C-A 13543740-C-A **
56827567-G-T **
23734247-C-A 21572361-C-A **
24232-G-A **
21103141-C-A 18941255-C-A **
9424592-T-G 9586983-T-G **
19293644-G-A 17181764-G-A **
18284513-C-A 16172633-C-A P6_Prx **
5219529-G-C 5351488-G-C **
23488831-C-A 21326945-C-A **
15617926-C-A 13506046-C-A **
10954423-A-T **
3093373-C-A 3225332-C-A **
7304472-C-A 7436431-C-A **
7242475-C-A 7374434-C-A **
56850922-G-T **
21164614-C-A 19002728-C-A **
14575924-C-A 12464124-C-A **
7643245-C-A 7775204-C-A **
22124411-C-A 19962525-C-A **
18147537-TG-T 16035657-TG-T **
10802506-G-C **
11034856-T-C **
28521192-C-A 26375045-C-A **
10824168-A-G **
17414804-C-A 15302924-C-A **
2847224-C-A 2979183-C-A **
5864513-A-G 5996472-A-G **
21262735-C-A 19100849-C-A **
16717278-C-A 14605398-C-A **
18959280-T-A 16847400-T-A **
14589857-C-A 12478057-C-A **
4178024-C-A 4309983-C-A **
17029285-C-A 14917405-C-A **
14593039-C-A 12481239-C-A **
16823790-C-A 14711910-C-A **
7670828-C-A 7802787-C-A **
21699119-C-A 19537233-C-A **
9063713-C-A 9226104-C-A **
16667084-T-G 14555204-T-G **
14802707-C-A 12690778-C-A **
26314722-G-T 24168575-G-T P1_Y1 **
7311275-C-A 7443234-C-A **
18724967-C-A 16613087-C-A **
25995539-T-A 23849392-T-A P1_Y1 **
22149923-C-A 19988037-C-A **
24119567-C-A 21973420-C-A P3_b1 **
18616003-C-A 16504123-C-A **
28556323-C-A 26410176-C-A **
4144028-C-A 4275987-C-A FT381960 **
19539568-GT-G 17427688-GT-G 9×T**
15412370-C-A 13300490-C-A **
6580430-C-A 6712389-C-A **
19517715-C-A 17405835-C-A **
7237873-C-A 7369832-C-A **
21207048-C-A 19045162-C-A **
14007298-C-A 11886592-C-A **
19258835-C-A 17146955-C-A **
14422693-T-G 12301968-T-G **
22316341-G-T 20154455-G-T DYZ19 **
22564560-A-C 20402674-A-C **
2683402-C-A 2815361-C-A **
16093011-C-A 13981131-C-A **
11026072-C-A **
13311863-C-A 11156187-C-A FT442679 **
22447611-G-T 20285725-G-T DYZ19 **
23544926-C-A 21383040-C-A **
8030030-T-A 8161989-T-A 26×A**
13907476-T-A 11786770-T-A **
17940117-C-A 15828237-C-A **
3990754-C-A 4122713-C-A **
13584826-T-C 11429150-T-C **
13226428-C-A 11070752-C-A **
10941120-C-A **
9732883-G-A 9895274-G-A IR3_Prx **
22028745-C-A 19866859-C-A **
2740491-G-T 2872450-G-T **
14065927-C-A 11945221-C-A **
15922300-G-T 13810420-G-T **
4540247-C-A 4672206-C-A **
24363667-C-T 22217520-C-T **
15761078-C-A 13649198-C-A **
22147828-T-C 19985942-T-C **
26249024-C-A 24102877-C-A P1_Y1 **
14144078-A-C 12023372-A-C **
16767153-CTTTTTT-C 14655273-CTTTTTT-C 17×T**
8850107-C-A 8982066-C-A **
17159682-T-C 15047802-T-C **
14552382-C-A 12440583-C-A **
5755311-C-A 5887270-C-A **
7362574-A-G 7494533-A-G **
7362575-A-G 7494534-A-G **
28635194-C-A 26489047-C-A **
14566579-T-C 12454779-T-C **
14566583-A-G 12454783-A-G **
17444726-C-A 15332846-C-A **
15158690-C-A 13046776-C-A **
3271571-C-A 3403530-C-A **
15041039-C-A 12929129-C-A **
28712006-C-T 26565859-C-T **
3274736-C-A 3406695-C-A **
18422750-C-A 16310870-C-A P6_Gap **
10971955-T-A **
10954175-C-A **
23434460-C-A 21272574-C-A **
5586077-A-G 5718036-A-G **
4256967-C-A 4388926-C-A **
10673752-C-A **
8855411-G-T 8987370-G-T **
14431596-C-A 12310869-C-A **
14067337-G-A 11946631-G-A **
7320318-C-A 7452277-C-A **
2775334-C-A 2907293-C-A **
2960122-G-A 3092081-G-A **
3012215-A-C 3144174-A-C **
3012451-C-G 3144410-C-G **
3060332-A-T 3192291-A-T **
3116178-A-G 3248137-A-G **
3271131-T-C 3403090-T-C **
3271132-G-A 3403091-G-A **
3271137-A-G 3403096-A-G **
3271142-T-G 3403101-T-G **
3271144-A-C 3403103-A-C **
3271154-T-A 3403113-T-A **
3287156-A-C 3419115-A-C **
3349564-T-G 3481523-T-G **
3349588-C-G 3481547-C-G **
3349593-G-A 3481552-G-A **
3451427-T-A 3583386-T-A **
3515957-C-A 3647916-C-A **
3516054-C-G 3648013-C-G **
3593157-A-C 3725116-A-C **
3593314-A-T 3725273-A-T **
3609717-A-C 3741676-A-C **
3696407-G-C 3828366-G-C **
3696413-C-T 3828372-C-T **
3796938-G-T 3928897-G-T **
3808089-C-A 3940048-C-A **
4053697-C-T 4185656-C-T **
4153565-G-T 4285524-G-T **
4201652-G-A 4333611-G-A **
4215759-C-T 4347718-C-T **
4239927-G-A 4371886-G-A **
4419838-A-G 4551797-A-G **
4505399-C-A 4637358-C-A **
4540267-G-C 4672226-G-C **
4540322-A-G 4672281-A-G **
4540350-G-T 4672309-G-T **
4540381-C-G 4672340-C-G **
4552996-A-C 4684955-A-C **
4589572-A-G 4721531-A-G **
4596402-C-A 4728361-C-A **
4626261-G-A 4758220-G-A **
4626268-T-A 4758227-T-A **
4665846-A-T 4797805-A-T **
4873652-C-T 5005611-C-T **
4929330-A-C 5061289-A-C **
4959876-A-G 5091835-A-G **
4959883-A-C 5091842-A-C **
4959956-A-G 5091915-A-G **
4959981-A-C 5091940-A-C **
5113109-C-A 5245068-C-A **
5114024-G-T 5245983-G-T **
5114114-G-T 5246073-G-T **
5117484-A-T 5249443-A-T **
5126231-T-C 5258190-T-C **
5219039-C-A 5350998-C-A **
5313942-T-C 5445901-T-C **
5490801-T-C 5622760-T-C **
5490818-C-A 5622777-C-A **
5622925-T-A 5754884-T-A **
5691106-C-A 5823065-C-A **
5871902-T-C 6003861-T-C **
5977969-A-T 6109928-A-T **
5977976-A-T 6109935-A-T **
6150083-C-A 6282042-C-A IR3_Dst **
6262429-T-TC 6394388-T-TC IR3_Dst **
6283954-C-G 6415913-C-G IR3_Dst **
6283970-T-C 6415929-T-C IR3_Dst **
6283984-T-C 6415943-T-C IR3_Dst **
6283994-G-C 6415953-G-C IR3_Dst **
6331111-C-A 6463070-C-A IR3_Dst **
6356209-G-T 6488168-G-T **
6452872-C-A 6584831-C-A **
6580392-G-C 6712351-G-C **
6699549-C-A 6831508-C-A **
6775410-A-G 6907369-A-G **
6776494-C-T 6908453-C-T FT273356 **
6776496-CCA-C 6908455-CCA-C **
6790078-C-A 6922037-C-A **
6818863-G-A 6950822-G-A **
6954958-A-G 7086917-A-G **
6957634-C-T 7089593-C-T **
7002048-G-T 7134007-G-T **
7011508-G-A 7143467-G-A **
7042733-C-A 7174692-C-A **
7063756-C-A 7195715-C-A **
7113066-T-C 7245025-T-C **
7123410-G-T 7255369-G-T **
7145677-G-T 7277636-G-T **
7145692-T-G 7277651-T-G **
7145703-C-T 7277662-C-T **
7145709-G-T 7277668-G-T **
7167662-C-A 7299621-C-A **
7181789-G-T 7313748-G-T **
7203891-C-A 7335850-C-A **
7223009-G-T 7354968-G-T **
7234479-C-G 7366438-C-G **
7235003-A-T 7366962-A-T **
7319141-T-C 7451100-T-C **
7338766-A-G 7470725-A-G **
7381808-T-A 7513767-T-A **
7400189-G-T 7532148-G-T **
7400196-G-A 7532155-G-A **
7411334-C-A 7543293-C-A **
7467896-T-C 7599855-T-C IR1_L **
7534688-C-A 7666647-C-A **
7541134-G-A 7673093-G-A **
7590487-A-G 7722446-A-G **
7643080-C-A 7775039-C-A **
7757184-A-C 7889143-A-C **
7866133-A-C 7998092-A-C **
7869063-C-A 8001022-C-A **
7896885-G-T 8028844-G-T **
7897458-C-G 8029417-C-G **
7897528-T-C 8029487-T-C **
7996899-G-A 8128858-G-A **
8064303-C-A 8196262-C-A **
8130453-G-C 8262412-G-C **
8138175-G-A 8270134-G-A **
8138178-G-A 8270137-G-A **
8230567-T-C 8362526-T-C **
8295400-A-C 8427359-A-C **
8466180-C-A 8598139-C-A **
8501636-C-A 8633595-C-A **
8692796-G-T 8824755-G-T **
8698726-A-C 8830685-A-C **
8715143-C-A 8847102-C-A **
8855209-C-A 8987168-C-A **
8907619-C-G 9039578-C-G **
9015282-C-A 9177673-C-A **
9055389-C-A 9217780-C-A **
9321889-C-G 9484280-C-G **
9404416-G-T 9566807-G-T **
9436774-T-C 9599165-T-C **
9453905-C-A 9616296-C-A **
9465284-A-C 9627675-A-C **
9908370-A-T 10070761-A-T **
9908405-G-A 10070796-G-A **
9908412-G-C 10070803-G-C **
9939570-C-A 10101961-C-A **
9962051-C-A 10124442-C-A **
10010979-A-T 10173370-A-T **
10024933-T-A 10187324-T-A **
10658362-C-G **
10658367-C-G **
10663410-C-A **
10665210-T-G **
10665216-A-G **
10665263-T-A **
10673333-A-G **
10684897-G-A **
10685026-C-A **
10687267-C-A **
10693412-A-G **
10749676-C-A **
10750357-G-T **
10781177-C-T **
10781546-T-C **
10796500-C-G **
10807832-C-A **
10813481-T-C **
10813531-C-G **
10817320-T-A **
10817401-C-T **
10818921-C-A **
10846062-A-G **
10846080-C-A FT433859 **
10850376-C-A **
10862361-A-C **
10867886-C-A **
10917963-C-A **
10937014-T-A **
10941070-C-A **
10946570-T-G **
10947154-C-G **
10947165-T-A **
10951894-C-A **
10971918-A-ACTCCACTCCACTC **
10971921-C-CTG **
10971959-C-CAATATCCAT **
10980879-C-A **
10988456-T-A **
10989845-C-A **
10999923-C-G **
11018024-A-G **
11018054-A-T **
11026960-T-G **
11029993-G-T **
13224752-G-A 11069076-G-A **
13224753-A-C 11069077-A-C **
13273399-C-A 11117723-C-A **
13310729-C-A 11155053-C-A **
13360092-C-A 11204416-C-A **
13394892-T-A 11239216-T-A **
13441813-A-T 11286137-A-T **
13457633-A-C 11301957-A-C **
13457648-T-C 11301972-T-C **
13475565-A-T 11319889-A-T **
13475616-A-C 11319940-A-C **
13475627-A-C 11319951-A-C **
13485673-T-A 11329997-T-A **
13550808-C-A 11395132-C-A **
13597397-C-A 11441721-C-A **
13621621-A-C 11465945-A-C **
13621635-G-C 11465959-G-C **
13642847-T-G 11487171-T-G **
13642849-G-C 11487173-G-C **
11645418-C-T **
11668093-G-T **
11675589-A-T **
13871305-A-C 11750599-A-C **
13928242-T-G 11807536-T-G **
13940017-A-G 11819311-A-G **
13990217-C-A 11869511-C-A **
14006610-C-A 11885904-C-A **
14007701-T-G 11886995-T-G **
14007711-T-G 11887005-T-G **
14076666-C-A 11955960-C-A **
14115006-C-A 11994300-C-A **
14203353-C-A 12082647-C-A **
14219760-A-G 12099054-A-G **
14274141-C-G 12153435-C-G **
14278922-A-G 12158216-A-G **
14299907-G-T 12179201-G-T **
14303560-C-A 12182854-C-A **
14366389-A-T 12245684-A-T **
14369110-A-G 12248406-A-G **
14404903-T-C 12284200-T-C **
14493324-A-T 12381521-A-T **
14519504-G-C 12407705-G-C **
14519514-T-G 12407715-T-G **
14551658-G-A 12439859-G-A **
14566554-CCT-C 12454754-CCT-C **
14575991-C-A 12464191-C-A **
14579501-C-A 12467701-C-A **
14581149-C-A 12469349-C-A **
14700261-A-G 12588327-A-G **
14716210-C-A 12604277-C-A **
14718595-G-A 12606663-G-A **
14736107-C-A 12624175-C-A **
14757732-A-G 12645801-A-G **
14767961-TC-T 12656030-TC-T **
14792802-C-T 12680873-C-T **
14845487-T-C 12733553-T-C **
14884668-C-A 12772734-C-A **
14948849-C-T 12836923-C-T **
14959609-G-C 12847684-G-C **
14959611-T-C 12847686-T-C **
14969145-C-A 12857220-C-A **
15034836-T-G 12922924-T-G **
15060876-A-G 12948968-A-G **
15117385-A-T 13005472-A-T **
15171572-T-C 13059658-T-C **
15171583-T-A 13059669-T-A **
15201446-C-G 13089532-C-G **
15215607-A-C 13103693-A-C **
15219126-C-A 13107212-C-A **
15249051-C-A 13137137-C-A **
15320699-A-T 13208817-A-T **
15324980-C-A 13213098-C-A **
15392120-T-C 13280240-T-C **
15392195-G-A 13280315-G-A **
15392449-T-G 13280569-T-G FT288221 **
15401924-A-T 13290044-A-T **
15404286-G-A 13292406-G-A **
15404291-T-G 13292411-T-G **
15483823-A-T 13371943-A-T **
15493264-C-A 13381384-C-A **
15503257-G-C 13391377-G-C **
15579574-A-G 13467694-A-G **
15617889-C-A 13506009-C-A **
15653319-T-G 13541439-T-G **
15662275-T-C 13550395-T-C **
15662277-T-A 13550397-T-A **
15662344-C-G 13550464-C-G **
15700983-A-T 13589103-A-T **
15743141-C-T 13631261-C-T **
15852714-T-C 13740834-T-C **
15871548-T-A 13759668-T-A **
15916253-G-C 13804373-G-C **
15918517-C-A 13806637-C-A **
15988178-C-T 13876298-C-T FT420655 **
16019177-C-A 13907297-C-A **
16028612-C-T 13916732-C-T **
16050897-C-A 13939017-C-A **
16104189-G-A 13992309-G-A P8_Prx **
16104204-C-A 13992324-C-A P8_Prx **
16104213-T-G 13992333-T-G P8_Prx **
16104229-A-G 13992349-A-G P8_Prx **
16104248-C-A 13992368-C-A P8_Prx **
16104262-T-A 13992382-T-A P8_Prx **
16171118-C-A 14059238-C-A **
16181394-C-A 14069514-C-A **
16211140-T-C 14099260-T-C **
16214029-A-T 14102149-A-T **
16214120-C-A 14102240-C-A **
16309329-T-C 14197449-T-C **
16336118-C-G 14224238-C-G **
16354881-AAG-A 14243001-AAG-A **
16417400-G-C 14305520-G-C **
16422969-G-T 14311089-G-T **
16465699-C-A 14353819-C-A **
16505176-C-A 14393296-C-A **
16541075-G-T 14429195-G-T **
16541127-A-C 14429247-A-C **
16571783-C-A 14459903-C-A **
16654868-G-A 14542988-G-A **
16667087-A-G 14555207-A-G **
16667145-C-G 14555265-C-G **
16667151-T-C 14555271-T-C **
16831074-C-A 14719194-C-A **
16914259-G-T 14802379-G-T **
16914287-C-T 14802407-C-T **
16970347-G-A 14858467-G-A **
17027301-C-A 14915421-C-A **
17042743-T-G 14930863-T-G **
17085903-T-G 14974023-T-G **
17088933-C-A 14977053-C-A **
17092554-C-T 14980674-C-T **
17110388-T-G 14998508-T-G **
17146524-C-A 15034644-C-A **
17199565-T-G 15087685-T-G **
17214444-C-A 15102564-C-A **
17301226-G-T 15189346-G-T **
17372090-C-A 15260210-C-A **
17374634-C-G 15262754-C-G **
17375692-G-T 15263812-G-T **
17420923-C-T 15309043-C-T **
17513823-C-A 15401943-C-A **
17538145-G-T 15426265-G-T **
17545548-G-A 15433668-G-A **
17572058-C-G 15460178-C-G **
17591872-G-A 15479992-G-A **
17616699-T-C 15504819-T-C **
17672050-C-G 15560170-C-G **
17702586-T-C 15590706-T-C **
17864882-A-T 15753002-A-T **
17871002-T-G 15759122-T-G **
17876346-G-T 15764466-G-T **
17876364-G-T 15764484-G-T **
17923065-C-A 15811185-C-A **
17951728-C-A 15839848-C-A **
17991268-T-A 15879388-T-A P7_Prx **
17991269-A-ATC 15879389-A-ATC P7_Prx **
18093865-TG-T 15981985-TG-T **
18212545-T-C 16100665-T-C **
18226094-C-T 16114214-C-T FTA40650 **
18242866-T-A 16130986-T-A **
18242881-A-G 16131001-A-G **
18307291-T-G 16195411-T-G P6_Prx **
18307306-C-A 16195426-C-A P6_Prx **
18307315-A-G 16195435-A-G P6_Prx **
18307331-A-G 16195451-A-G P6_Prx **
18307350-C-G 16195470-C-G P6_Prx **
18307364-A-C 16195484-A-C P6_Prx **
18307370-T-C 16195490-T-C P6_Prx **
18307376-G-A 16195496-G-A P6_Prx **
18422743-C-A 16310863-C-A P6_Gap **
18531028-G-A 16419148-G-A P6_Dst **
18554396-C-A 16442516-C-A **
18605250-C-T 16493370-C-T **
18647698-C-A 16535818-C-A **
18670231-A-G 16558351-A-G **
18687690-T-A 16575810-T-A **
18733482-C-T 16621602-C-T **
18756055-C-A 16644175-C-A **
18756069-C-A 16644189-C-A **
18789649-C-T 16677769-C-T **
18789674-A-C 16677794-A-C **
18841200-C-A 16729320-C-A **
18859329-C-A 16747449-C-A **
18994537-G-A 16882657-G-A **
18994596-A-T 16882716-A-T **
19008683-C-A 16896803-C-A **
19020356-A-T 16908476-A-T **
19045030-C-A 16933150-C-A FT305873 **
19075080-C-T 16963200-C-T **
19075639-G-A 16963759-G-A **
19128598-T-C 17016718-T-C **
19270533-A-G 17158653-A-G **
19293633-G-T 17181753-G-T **
19293694-G-A 17181814-G-A **
19293705-A-G 17181825-A-G **
19303476-A-G 17191596-A-G **
19346630-G-T 17234750-G-T **
19367463-T-C 17255583-T-C **
19431466-C-A 17319586-C-A **
19462594-T-C 17350714-T-C **
19524521-T-A 17412641-T-A **
19524615-C-G 17412735-C-G **
19524620-T-A 17412740-T-A **
19524639-G-C 17412759-G-C **
19524642-C-A 17412762-C-A **
19524659-G-A 17412779-G-A **
19733614-A-G 17621734-A-G P5_Prx **
19733628-T-C 17621748-T-C P5_Prx **
19733644-T-G 17621764-T-G P5_Prx **
19733663-T-G 17621783-T-G P5_Prx **
19768385-G-C 17656505-G-C P5_Prx **
19768399-C-G 17656519-C-G P5_Prx **
19768418-T-C 17656538-T-C P5_Prx **
19768434-C-T 17656554-C-T P5_Prx **
19768448-C-G 17656568-C-G P5_Prx **
19768458-G-T 17656578-G-T P5_Prx **
19924651-A-C 17812771-A-C P5_Prx **
20231508-C-CAAGAAAGAAGGA 18069622-C-CAAGAAAGAAGGA P5_Dst 21×AAGA**
20252798-A-AC 18090912-A-AC P5_Dst **
20334839-G-T 18172953-G-T P5_Dst **
20387098-A-AT 18225212-A-AT P5_Dst **
20434784-T-AAAA 18272898-T-AAAA P5_Dst **
20582531-T-TAAA 18420645-T-TAAA P5_Dst **
20614948-G-T 18453062-G-T P4_Prx **
20640964-G-T 18479078-G-T P4_Prx **
20650584-G-A 18488698-G-A P4_Prx **
21084556-C-A 18922670-C-A **
21090911-C-A 18929025-C-A **
21141451-C-A 18979565-C-A **
21146389-G-C 18984503-G-C **
21146402-G-A 18984516-G-A **
21146427-T-A 18984541-T-A **
21146437-T-C 18984551-T-C **
21146443-T-A 18984557-T-A **
21153545-A-G 18991659-A-G **
21190374-G-T 19028488-G-T **
21202547-G-A 19040661-G-A **
21369402-C-A 19207516-C-A **
21405854-A-C 19243968-A-C **
21410202-A-G 19248316-A-G **
21457713-G-C 19295827-G-C **
21615874-A-C 19453988-A-C **
21627169-A-G 19465283-A-G **
21653814-G-A 19491928-G-A **
21770122-G-A 19608236-G-A **
21880983-G-A 19719097-G-A **
21881009-T-C 19719123-T-C **
21895590-T-A 19733704-T-A **
21919342-G-A 19757456-G-A **
21949429-G-T 19787543-G-T **
22028735-A-C 19866849-A-C **
22037579-G-A 19875693-G-A **
22084768-C-A 19922882-C-A **
22166724-A-T 20004838-A-T **
22316229-T-C 20154343-T-C DYZ19 **
22316331-T-A 20154445-T-A DYZ19 **
22316367-G-T 20154481-G-T DYZ19 **
22335153-T-A 20173267-T-A DYZ19 **
22524878-A-C 20362992-A-C **
22536844-A-G 20374958-A-G **
22580162-C-A 20418276-C-A **
22592857-T-C 20430971-T-C **
22629654-G-A 20467768-G-A **
22629673-G-T 20467787-G-T **
22849554-C-T 20687668-C-T **
22880786-A-C 20718900-A-C **
22885945-A-C 20724059-A-C **
22914522-C-A 20752636-C-A **
22965127-G-A 20803241-G-A **
23034330-G-A 20872444-G-A **
23058529-C-A 20896643-C-A **
23098700-C-A 20936814-C-A **
23115226-T-A 20953340-T-A **
23128560-A-T 20966674-A-T **
23208137-T-C 21046251-T-C **
23255990-A-G 21094104-A-G **
23262811-A-G 21100925-A-G **
23272494-C-A 21110608-C-A **
23434112-C-A 21272226-C-A **
23434453-A-C 21272567-A-C **
23475689-C-A 21313803-C-A **
23597517-A-G 21435631-A-G **
23719957-G-T 21558071-G-T **
23720009-A-T 21558123-A-T **
23819097-C-A 21657211-C-A **
23825065-T-TG 21663179-T-TG **
23825071-T-TA 21663185-T-TA **
23853779-A-T 21691893-A-T **
21755285-C-A **
23997632-C-A 21851485-C-A **
24302818-A-AT 22156671-A-AT P3_t1 **
24363657-A-T 22217510-A-T **
24372039-A-G 22225892-A-G **
24403425-G-T 22257278-G-T **
24408381-T-C 22262234-T-C **
24869491-T-G 22723344-T-G IR1_R **
24869533-G-T 22723386-G-T IR1_R **
24869572-T-G 22723425-T-G IR1_R **
24869593-T-A 22723446-T-A IR1_R **
25938814-T-A 23792667-T-A P1_Y1 **
25938855-G-A 23792708-G-A P1_Y1 **
25995540-AC-A 23849393-AC-A P1_Y1 **
25995545-AG-A 23849398-AG-A P1_Y1 **
26328389-A-C 24182242-A-C P1_Y1 **
26328405-A-C 24182258-A-C P1_Y1 **
26328429-A-T 24182282-A-T P1_Y1 **
26427165-C-A 24281018-C-A P1_Y1 **
27053535-G-A 24907388-G-A P1_r4 **
27633620-G-T 25487473-G-T P1_Y2 **
27647520-C-A 25501373-C-A P1_Y2 **
27714253-C-A 25568106-C-A P1_Y2 **
27792005-C-T 25645858-C-T P1_Y2 **
28479692-C-T 26333545-C-T **
28496991-T-C 26350844-T-C **
28510469-T-G 26364322-T-G **
28520608-G-A 26374461-G-A **
28548687-C-T 26402540-C-T **
28567022-T-G 26420875-T-G **
28568090-A-T 26421943-A-T **
28568093-A-C 26421946-A-C **
28568097-A-C 26421950-A-C **
28591197-G-T 26445050-G-T **
28645306-G-A 26499159-G-A **
28659435-T-C 26513288-T-C **
28686147-G-T 26540000-G-T **
28711994-G-C 26565847-G-C **
28726053-C-A 26579906-C-A **
28764238-A-G 26618091-A-G **
28781445-T-C 26635298-T-C **
28782200-A-G 26636053-A-G **
28808584-G-C 26662437-G-C **
56724772-T-C **
56841234-T-G **
56841417-C-T **
56845478-G-T **
56861736-G-T **
56862678-A-G **
5180580-TAAGA-T 5312539-TAAGA-T **
6527429-G-A 6659388-G-A **
21392597-G-C 19230711-G-C **
22640246-A-G 20478360-A-G **
23452176-A-G 21290290-A-G **
24114684-T-A 21968537-T-A P3_b1 ***
23827569-T-G 21665683-T-G ***
4174640-C-A 4306599-C-A ***
2862892-CAA-C,CAAA 2994851-CAA-C,CAAA 18×A***
10807336-T-A ***
10780414-C-A ***
28492334-C-A 26346187-C-A ***
7538698-C-A 7670657-C-A ***
18184918-C-A 16073038-C-A ***
4065729-C-A 4197688-C-A ***
22165042-C-A 20003156-C-A ***
14216256-C-A 12095550-C-A ***
2686620-G-A 2818579-G-A ***
22747696-G-T 20585810-G-T ***
2979229-C-A 3111188-C-A ***
13465992-A-T 11310316-A-T ***
14090254-C-A 11969548-C-A ***
22191811-C-A 20029925-C-A ***
8384793-G-T 8516752-G-T ***
18951809-C-A 16839929-C-A ***
15585138-C-A 13473258-C-A ***
13236496-C-A 11080820-C-A ***
23491038-C-A 21329152-C-A ***
24673300-T-C 22527153-T-C P3_b2 ***
18647715-C-A 16535835-C-A ***
10669584-T-C ***
56832087-C-A ***
17405744-C-A 15293864-C-A ***
3328088-C-A 3460047-C-A ***
3890339-A-G 4022298-A-G ***
6915818-TG-G,TTT 7047777-TG-G,TTT ***
7531959-C-A 7663918-C-A ***
8238230-A-G 8370189-A-G ***
8981431-T-A 9143822-T-A ***
9520020-C-A 9682411-C-A ***
10780430-C-T ***
10809554-TATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCC-T ***
14248430-C-A 12127724-C-A ***
14734922-C-A 12622990-C-A ***
14735746-C-A 12623814-C-A ***
14836645-C-A 12724712-C-A ***
15191300-C-A 13079386-C-A ***
15258589-C-A 13146673-C-A ***
15495782-CA-C 13383902-CA-C ***
15650046-C-A 13538166-C-A ***
16320361-G-T 14208481-G-T ***
16588504-C-A 14476624-C-A ***
16734940-AT-A 14623060-AT-A 8×T***
16811677-T-A 14699797-T-A ***
17148260-C-A 15036380-C-A ***
17997231-T-C 15885351-T-C P7_Gap ***
18944231-C-A 16832351-C-A ***
19091620-C-A 16979740-C-A ***
19416935-C-A 17305055-C-A FTB29903 ***
20968334-G-T 18806448-G-T P4_Dst ***
21491318-T-C 19329432-T-C ***
22132248-AT-A 19970362-AT-A ***
22199238-C-A 20037352-C-A ***
22866326-C-A 20704440-C-A ***
23044434-A-G 20882548-A-G ***
23190115-G-T 21028229-G-T ***
24492557-A-T 22346410-A-T ***
28370107-G-T 26223960-G-T P1_gr2 ***
28468892-C-A 26322745-C-A ***
28479310-C-A 26333163-C-A ***
28633505-C-A 26487358-C-A ***
56835662-C-A ***
9416731-GTT-G,GT 9579122-GTT-G,GT 23×T***
5976101-G-A 6108060-G-A ***
7347153-C-T 7479112-C-T ***
8422324-CTGTGTG-C 8554283-CTGTGTG-C 15×TG***
19183814-CTTTTT-C,CTTT 17071934-CTTTTT-C,CTTT 28×T***
21697359-T-C 19535473-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.