Johnson
FTDNA: 21609, BigY2: 21609Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 21609 | BigY2 21609 |
---|---|---|---|---|---|---|---|---|---|
28800126-G-T | 26653979-G-T | A* | |||||||
15455534-G-T | 13343654-G-T | A17454 | Y | Y | + | + | |||
7096454-G-A | 7228413-G-A | M11059 V139 | Y | Y | *** | * | |||
7096457-A-T | 7228416-A-T | V141 M11060 | Y | Y | *** | * | |||
7096470-C-T | 7228429-C-T | Y23626 | Y | Y | *** | * | |||
7096471-A-G | 7228430-A-G | YP526 | Y | Y | *** | * | |||
3076068-TC-T | 3208027-TC-T | ** | |||||||
17081268-A-T | 14969388-A-T | 9×AT | ** | ||||||
18398190-CACATAT-C | 16286310-CACATAT-C | P6_Gap | ** | ||||||
13228283-G-A | 11072607-G-A | Z3732 | ** | ||||||
19438607-A-G | 17326727-A-G | ** | |||||||
58969954-A-G | 56823807-A-G | ** | |||||||
58992001-T-G | 56845854-T-G | ** | |||||||
59026162-G-T | 56880015-G-T | ** | |||||||
6878800-A-C | 7010759-A-C | M5386 | ** | ||||||
7218281-G-T | 7350240-G-T | ** | |||||||
26124420-T-C | 23978273-T-C | P1_Y1 | ** | ||||||
9735636-C-T | 9898027-C-T | IR3_Prx | ** | ||||||
27060126-A-G | 24913979-A-G | P1_r4 | ** | ||||||
8481163-AAT-A | 8613122-AAT-A | ** | |||||||
21473774-C-A | 19311888-C-A | ** | |||||||
22247195-G-C | 20085309-G-C | DYZ19 | *** | ** | |||||
22355192-C-A | 20193306-C-A | DYZ19 | ** | ||||||
15285905-C-A | 13174004-C-A | ** | |||||||
10954313-T-A | FT438035 | ** | |||||||
10954335-C-A | ** | ||||||||
10954344-T-A | ** | ||||||||
18367671-G-A | 16255791-G-A | P6_Prx | ** | ||||||
14689298-C-A | 12577364-C-A | ** | |||||||
17088840-C-A | 14976960-C-A | ** | |||||||
21737903-G-A | 19576017-G-A | ** | |||||||
14310339-C-A | 12189633-C-A | ** | |||||||
5190004-GAAA-G | 5321963-GAAA-G | 16×A | ** | ||||||
18717756-G-A | 16605876-G-A | ** | |||||||
10990160-T-C | ** | ||||||||
13962078-A-G | 11841372-A-G | ** | |||||||
4993786-A-ATG | 5125745-A-ATG | 10×TG | ** | ||||||
18756294-C-A | 16644414-C-A | ** | |||||||
9885014-C-A | 10047405-C-A | ** | |||||||
20741858-T-TC | 18579972-T-TC | P4_Prx | ** | ||||||
11033147-C-CATTTGCATTG | ** | ||||||||
11033153-C-T | FT287136 | ** | |||||||
7174352-C-A | 7306311-C-A | ** | |||||||
10989400-C-A | ** | ||||||||
3440367-A-T | 3572326-A-T | ** | |||||||
16017719-C-A | 13905839-C-A | ** | |||||||
10945213-C-A | ** | ||||||||
10945228-CTCCAA-C | ** | ||||||||
10945240-C-A | ** | ||||||||
10945242-A-G | ** | ||||||||
3033181-C-A | 3165140-C-A | ** | |||||||
10829672-C-T | ** | ||||||||
21201771-C-A | 19039885-C-A | ** | |||||||
10655929-C-T | FT428255 | ** | |||||||
14299896-C-A | 12179190-C-A | FT201431 | ** | ||||||
11011696-C-A | ** | ||||||||
3995211-C-A | 4127170-C-A | ** | |||||||
10795598-C-A | ** | ||||||||
56850290-C-A | ** | ||||||||
7313537-C-A | 7445496-C-A | ** | |||||||
19547311-G-A | 17435431-G-A | ** | |||||||
20829782-C-A | 18667896-C-A | P4_Gap | ** | ||||||
19591947-AT-A | 17480067-AT-A | P5_Prx | ** | ||||||
8982921-G-T | 9145312-G-T | ** | |||||||
28605356-C-A | 26459209-C-A | ** | |||||||
13468240-C-A | 11312564-C-A | ** | |||||||
12450522-CTTTT-C | 41×T | ** | |||||||
2909234-CAAAAA-C | 3041193-CAAAAA-C | 16×A | ** | ||||||
5266761-C-A | 5398720-C-A | ** | |||||||
21754495-A-T | ** | ||||||||
21754498-A-T | ** | ||||||||
21754499-C-A | ** | ||||||||
21754500-A-T | ** | ||||||||
21754501-CA-C | ** | ||||||||
21754516-T-G | ** | ||||||||
14582402-C-A | 12470602-C-A | ** | |||||||
16814041-C-A | 14702161-C-A | ** | |||||||
14509432-C-A | 12397637-C-A | ** | |||||||
8075786-C-A | 8207745-C-A | ** | |||||||
4875371-G-T | 5007330-G-T | ** | |||||||
16914396-G-A | 14802516-G-A | ** | |||||||
56724872-A-G | ** | ||||||||
10949340-T-G | ** | ||||||||
10973178-G-T | ** | ||||||||
10954309-T-TCCCAA | ** | ||||||||
21990997-G-T | 19829111-G-T | ** | |||||||
2740468-C-A | 2872427-C-A | ** | |||||||
18951541-C-A | 16839661-C-A | ** | |||||||
17087072-G-A | 14975192-G-A | ** | |||||||
17125951-C-A | 15014071-C-A | ** | |||||||
17165459-C-A | 15053579-C-A | ** | |||||||
17369239-C-A | 15257359-C-A | ** | |||||||
7044224-C-A | 7176183-C-A | ** | |||||||
17187565-TC-T | 15075685-TC-T | ** | |||||||
9240796-C-A | 9403187-C-A | ** | |||||||
10685968-C-A | ** | ||||||||
10689132-C-G | ** | ||||||||
11021712-G-T | ** | ||||||||
3817366-C-A | 3949325-C-A | ** | |||||||
8660417-T-A | 8792376-T-A | ** | |||||||
14786362-C-A | 12674432-C-A | ** | |||||||
9063216-T-C | 9225607-T-C | ** | |||||||
13468267-A-T | 11312591-A-T | ** | |||||||
21909556-C-A | 19747670-C-A | ** | |||||||
21162785-C-A | 19000899-C-A | ** | |||||||
22602293-T-C | 20440407-T-C | ** | |||||||
23099986-C-A | 20938100-C-A | ** | |||||||
3599548-C-A | 3731507-C-A | ** | |||||||
7132850-C-A | 7264809-C-A | ** | |||||||
10945298-T-C | ** | ||||||||
4569680-C-A | 4701639-C-A | ** | |||||||
9437334-C-A | 9599725-C-A | ** | |||||||
14716622-C-T | 12604690-C-T | ** | |||||||
9965025-C-A | 10127416-C-A | ** | |||||||
23399793-C-A | 21237907-C-A | Y111456 | ** | ||||||
10933467-C-A | ** | ||||||||
7196262-C-A | 7328221-C-A | ** | |||||||
15211064-G-T | 13099150-G-T | ** | |||||||
15689044-C-A | 13577164-C-A | ** | |||||||
22783031-T-C | 20621145-T-C | ** | |||||||
22132915-C-A | 19971029-C-A | ** | |||||||
11652556-G-T | ** | ||||||||
21996367-T-C | 19834481-T-C | ** | |||||||
23425235-C-A | 21263349-C-A | ** | |||||||
10646722-C-A | ** | ||||||||
10984444-A-C | ** | ||||||||
21084437-ATTT-A | 18922551-ATTT-A | 12×T | ** | ||||||
21737895-T-C | 19576009-T-C | FT182215 | ** | ||||||
21737896-G-A | 19576010-G-A | ** | |||||||
21737912-A-T | 19576026-A-T | ** | |||||||
2986011-C-A | 3117970-C-A | ** | |||||||
23276980-G-T | 21115094-G-T | ** | |||||||
3270745-C-A | 3402704-C-A | ** | |||||||
10898475-C-A | ** | ||||||||
21602778-C-A | 19440892-C-A | ** | |||||||
18717769-C-A | 16605889-C-A | Y54805 | ** | ||||||
7783047-C-A | 7915006-C-A | ** | |||||||
9034399-C-A | 9196790-C-A | Y88442 | ** | ||||||
16395692-C-A | 14283812-C-A | ** | |||||||
6751239-G-A | 6883198-G-A | ** | |||||||
6751246-T-A | 6883205-T-A | ** | |||||||
23818501-G-T | 21656615-G-T | ** | |||||||
15790357-C-A | 13678477-C-A | ** | |||||||
15422858-C-A | 13310978-C-A | ** | |||||||
2895029-C-A | 3026988-C-A | ** | |||||||
7579654-C-A | 7711613-C-A | ** | |||||||
14520689-C-A | 12408890-C-A | ** | |||||||
10632634-C-A | ** | ||||||||
18717774-T-A | 16605894-T-A | ** | |||||||
18462706-G-T | 16350826-G-T | P6_Dst | ** | ||||||
10937064-G-T | ** | ||||||||
10775256-C-A | ** | ||||||||
28506193-C-A | 26360046-C-A | ** | |||||||
9874941-C-A | 10037332-C-A | ** | |||||||
7504618-C-A | 7636577-C-A | IR1_L | ** | ||||||
56861033-G-T | ** | ||||||||
13597293-C-A | 11441617-C-A | ** | |||||||
22787047-C-A | 20625161-C-A | ** | |||||||
11676356-G-A | ** | ||||||||
2773801-G-T | 2905760-G-T | ** | |||||||
14522361-C-A | 12410562-C-A | ** | |||||||
3051106-C-A | 3183065-C-A | ** | |||||||
7183604-C-A | 7315563-C-A | ** | |||||||
4229378-G-T | 4361337-G-T | ** | |||||||
10801249-T-C | ** | ||||||||
17231398-C-A | 15119518-C-A | ** | |||||||
15698618-C-A | 13586738-C-A | ** | |||||||
15193679-T-C | 13081765-T-C | ** | |||||||
11030313-G-C | ** | ||||||||
9025543-C-A | 9187934-C-A | ** | |||||||
22766592-C-A | 20604706-C-A | ** | |||||||
14717731-G-T | 12605799-G-T | ** | |||||||
28611536-T-C | 26465389-T-C | ** | |||||||
18778825-T-C | 16666945-T-C | ** | |||||||
8987661-G-T | 9150052-G-T | ** | |||||||
20807160-C-A | 18645274-C-A | P4_Gap | ** | ||||||
17929125-C-A | 15817245-C-A | ** | |||||||
14006796-C-A | 11886090-C-A | ** | |||||||
19436995-G-T | 17325115-G-T | ** | |||||||
18754836-C-A | 16642956-C-A | FT65289 | ** | ||||||
10880046-T-C | ** | ||||||||
19547328-C-A | 17435448-C-A | ** | |||||||
14366553-A-G | 12245848-A-G | ** | |||||||
15744567-G-A | 13632687-G-A | ** | |||||||
6978155-G-T | 7110114-G-T | ** | |||||||
10661011-ACACTT-A | ** | ||||||||
16341012-T-C | 14229132-T-C | ** | |||||||
5664268-C-A | 5796227-C-A | ** | |||||||
4136518-C-A | 4268477-C-A | ** | |||||||
13460537-A-T | 11304861-A-T | ** | |||||||
24247413-A-ACG | 22101266-A-ACG | P3_b1 | ** | ||||||
4509336-C-A | 4641295-C-A | ** | |||||||
10776467-C-T | ** | ||||||||
15280333-C-A | 13168432-C-A | ** | |||||||
2682820-C-A | 2814779-C-A | ** | |||||||
2773889-A-C | 2905848-A-C | ** | |||||||
2783527-C-A | 2915486-C-A | ** | |||||||
2795095-T-C | 2927054-T-C | ** | |||||||
2998042-GTGAGTGA-G | 3130001-GTGAGTGA-G | ** | |||||||
3015722-C-A | 3147681-C-A | ** | |||||||
3034502-C-A | 3166461-C-A | ** | |||||||
3034507-C-A | 3166466-C-A | ** | |||||||
3053218-A-T | 3185177-A-T | ** | |||||||
3108585-C-A | 3240544-C-A | ** | |||||||
3108600-C-A | 3240559-C-A | ** | |||||||
3124662-T-A | 3256621-T-A | ** | |||||||
3144460-G-T | 3276419-G-T | ** | |||||||
3336811-G-T | 3468770-G-T | ** | |||||||
3389197-A-G | 3521156-A-G | ** | |||||||
3390030-A-C | 3521989-A-C | ** | |||||||
3390056-G-T | 3522015-G-T | ** | |||||||
3418725-G-T | 3550684-G-T | ** | |||||||
3550768-C-A | 3682727-C-A | ** | |||||||
3568378-C-A | 3700337-C-A | ** | |||||||
3648614-A-G | 3780573-A-G | ** | |||||||
3819209-A-G | 3951168-A-G | ** | |||||||
3819356-G-A | 3951315-G-A | ** | |||||||
3907499-G-T | 4039458-G-T | ** | |||||||
3949740-G-A | 4081699-G-A | ** | |||||||
3969878-A-C | 4101837-A-C | ** | |||||||
3980925-G-T | 4112884-G-T | ** | |||||||
4016348-C-A | 4148307-C-A | ** | |||||||
4035773-G-T | 4167732-G-T | ** | |||||||
4069467-C-T | 4201426-C-T | FT183753 | ** | ||||||
4102359-G-T | 4234318-G-T | ** | |||||||
4109150-T-C | 4241109-T-C | ** | |||||||
4109195-CT-C | 4241154-CT-C | 8×T | ** | ||||||
4156987-C-A | 4288946-C-A | ** | |||||||
4200899-C-A | 4332858-C-A | ** | |||||||
4239467-T-C | 4371426-T-C | ** | |||||||
4293964-T-A | 4425923-T-A | ** | |||||||
4297279-A-C | 4429238-A-C | ** | |||||||
4366710-G-T | 4498669-G-T | ** | |||||||
4408957-AT-A | 4540916-AT-A | ** | |||||||
4433267-A-G | 4565226-A-G | ** | |||||||
4447915-G-T | 4579874-G-T | ** | |||||||
4483878-G-T | 4615837-G-T | ** | |||||||
4548061-C-A | 4680020-C-A | ** | |||||||
4629061-G-A | 4761020-G-A | ** | |||||||
4638904-G-T | 4770863-G-T | ** | |||||||
4758562-T-C | 4890521-T-C | ** | |||||||
4778523-T-C | 4910482-T-C | ** | |||||||
4781191-T-C | 4913150-T-C | ** | |||||||
4786288-A-T | 4918247-A-T | ** | |||||||
4789319-G-T | 4921278-G-T | ** | |||||||
4789878-C-A | 4921837-C-A | ** | |||||||
4814062-T-C | 4946021-T-C | ** | |||||||
4854154-C-A | 4986113-C-A | ** | |||||||
4870436-A-G | 5002395-A-G | ** | |||||||
5086808-T-G | 5218767-T-G | ** | |||||||
5086839-C-T | 5218798-C-T | ** | |||||||
5170634-T-C | 5302593-T-C | ** | |||||||
5205363-G-T | 5337322-G-T | ** | |||||||
5274969-T-C | 5406928-T-C | ** | |||||||
5472016-A-G | 5603975-A-G | ** | |||||||
5576739-C-T | 5708698-C-T | ** | |||||||
5610232-T-G | 5742191-T-G | ** | |||||||
5615837-G-A | 5747796-G-A | ** | |||||||
5617423-TC-T | 5749382-TC-T | ** | |||||||
5617614-G-T | 5749573-G-T | ** | |||||||
5674722-G-T | 5806681-G-T | ** | |||||||
5702190-A-G | 5834149-A-G | ** | |||||||
5709909-C-A | 5841868-C-A | ** | |||||||
5736003-G-T | 5867962-G-T | ** | |||||||
5748746-C-A | 5880705-C-A | ** | |||||||
5872256-A-AAAAT | 6004215-A-AAAAT | 9×AAT | ** | ||||||
5873396-A-G | 6005355-A-G | ** | |||||||
5940554-C-A | 6072513-C-A | ** | |||||||
5990537-G-T | 6122496-G-T | ** | |||||||
6073976-G-T | 6205935-G-T | ** | |||||||
6305536-A-T | 6437495-A-T | IR3_Dst | ** | ||||||
6369292-G-T | 6501251-G-T | ** | |||||||
6537552-AAG-A | 6669511-AAG-A | ** | |||||||
6624595-G-A | 6756554-G-A | ** | |||||||
6808053-G-A | 6940012-G-A | ** | |||||||
6831332-C-A | 6963291-C-A | ** | |||||||
6998236-A-C | 7130195-A-C | ** | |||||||
6998246-T-A | 7130205-T-A | ** | |||||||
7083027-C-G | 7214986-C-G | ** | |||||||
7110542-T-C | 7242501-T-C | ** | |||||||
7152731-C-A | 7284690-C-A | ** | |||||||
7197431-C-T | 7329390-C-T | ** | |||||||
7282330-G-T | 7414289-G-T | ** | |||||||
7285192-G-A | 7417151-G-A | ** | |||||||
7359714-TTC-T | 7491673-TTC-T | ** | |||||||
7390034-C-A | 7521993-C-A | ** | |||||||
7397629-C-A | 7529588-C-A | ** | |||||||
7574665-A-C | 7706624-A-C | ** | |||||||
7860264-A-C | 7992223-A-C | ** | |||||||
7985949-T-G | 8117908-T-G | ** | |||||||
8058613-CTAATTTTG-C | 8190572-CTAATTTTG-C | ** | |||||||
8076106-G-T | 8208065-G-T | ** | |||||||
8369707-T-C | 8501666-T-C | ** | |||||||
8481178-T-C | 8613137-T-C | ** | |||||||
8481346-T-C | 8613305-T-C | ** | |||||||
8793053-C-G | 8925012-C-G | ** | |||||||
8902025-C-A | 9033984-C-A | ** | |||||||
9118465-G-T | ** | ||||||||
9030304-G-A | 9192695-G-A | ** | |||||||
9094272-A-C | 9256663-A-C | ** | |||||||
9221617-A-G | 9384008-A-G | ** | |||||||
9888037-A-G | 10050428-A-G | ** | |||||||
9937751-T-A | 10100142-T-A | ** | |||||||
10026178-C-A | 10188569-C-A | ** | |||||||
10027171-C-A | 10189562-C-A | ** | |||||||
10626480-A-T | ** | ||||||||
10686057-C-T | ** | ||||||||
10772972-C-A | ** | ||||||||
10794523-C-A | ** | ||||||||
10807653-T-A | ** | ||||||||
10823999-C-A | ** | ||||||||
10826561-T-C | ** | ||||||||
10856224-T-C | ** | ||||||||
10862877-C-A | ** | ||||||||
10883825-T-C | ** | ||||||||
10921528-T-C | ** | ||||||||
10930945-T-G | ** | ||||||||
10946561-TTCCAC-T | ** | ||||||||
10946587-TG-T | ** | ||||||||
10947439-C-A | ** | ||||||||
10954771-C-T | ** | ||||||||
10983631-A-G | ** | ||||||||
10989457-C-CTCTT | ** | ||||||||
10989472-C-G | ** | ||||||||
10989978-A-C | ** | ||||||||
10990545-TCACTGCA-T | ** | ||||||||
11021365-TC-T | ** | ||||||||
13206523-C-T | 11050847-C-T | ** | |||||||
13225636-C-T | 11069960-C-T | ** | |||||||
13234429-A-T | 11078753-A-T | ** | |||||||
13253132-A-G | 11097456-A-G | ** | |||||||
13256114-C-A | 11100438-C-A | ** | |||||||
13643891-A-T | 11488215-A-T | ** | |||||||
11647780-C-T | ** | ||||||||
11651401-G-A | ** | ||||||||
11666147-G-A | ** | ||||||||
11666654-G-T | ** | ||||||||
11676855-T-TGGA | ** | ||||||||
13893720-A-G | 11773014-A-G | ** | |||||||
13936497-T-C | 11815791-T-C | ** | |||||||
13944305-G-T | 11823599-G-T | ** | |||||||
13961626-C-A | 11840920-C-A | ** | |||||||
14143034-A-T | 12022328-A-T | ** | |||||||
14176331-G-A | 12055625-G-A | ** | |||||||
14239597-T-A | 12118891-T-A | FT84918 | ** | ||||||
14270898-C-A | 12150192-C-A | ** | |||||||
14311785-T-G | 12191079-T-G | ** | |||||||
14311808-A-G | 12191102-A-G | ** | |||||||
14445270-C-T | 12324543-C-T | ** | |||||||
14556293-A-G | 12444494-A-G | FTB36293 | ** | ||||||
14563450-C-T | 12451650-C-T | ** | |||||||
14649589-C-A | 12537654-C-A | ** | |||||||
14786363-A-T | 12674433-A-T | ** | |||||||
14933547-C-A | 12821612-C-A | ** | |||||||
15178784-T-A | 13066870-T-A | ** | |||||||
15211050-C-T | 13099136-C-T | ** | |||||||
15298178-C-A | 13186277-C-A | ** | |||||||
15392455-C-T | 13280575-C-T | ** | |||||||
15403446-G-A | 13291566-G-A | ** | |||||||
15536433-C-G | 13424553-C-G | ** | |||||||
15598169-T-C | 13486289-T-C | ** | |||||||
15686018-G-A | 13574138-G-A | ** | |||||||
15686842-G-A | 13574962-G-A | ** | |||||||
15776305-C-A | 13664425-C-A | ** | |||||||
15793496-A-G | 13681616-A-G | ** | |||||||
15893672-G-T | 13781792-G-T | ** | |||||||
16012222-G-T | 13900342-G-T | ** | |||||||
16021949-G-C | 13910069-G-C | ** | |||||||
16031049-G-T | 13919169-G-T | ** | |||||||
16184400-TG-T | 14072520-TG-T | ** | |||||||
16297073-C-CT | 14185193-C-CT | ** | |||||||
16320506-G-T | 14208626-G-T | ** | |||||||
16411270-CACA-C | 14299390-CACA-C | ** | |||||||
16424795-C-T | 14312915-C-T | ** | |||||||
16590873-CAAAAAAA-C | 14478993-CAAAAAAA-C | 17×A | ** | ||||||
16675544-C-G | 14563664-C-G | ** | |||||||
16926796-T-A | 14814916-T-A | ** | |||||||
16999721-A-T | 14887841-A-T | ** | |||||||
17056661-C-A | 14944781-C-A | ** | |||||||
17183071-C-A | 15071191-C-A | ** | |||||||
17245702-G-T | 15133822-G-T | ** | |||||||
17270603-T-A | 15158723-T-A | ** | |||||||
17306801-T-C | 15194921-T-C | ** | |||||||
17482895-G-GAA | 15371015-G-GAA | 11×A | ** | ||||||
17572033-C-T | 15460153-C-T | ** | |||||||
17634607-A-G | 15522727-A-G | ** | |||||||
17637794-C-G | 15525914-C-G | ** | |||||||
17648476-A-G | 15536596-A-G | ** | |||||||
17653837-C-A | 15541957-C-A | ** | |||||||
17795590-T-C | 15683710-T-C | ** | |||||||
17795839-T-C | 15683959-T-C | ** | |||||||
17796257-T-A | 15684377-T-A | ** | |||||||
17987261-A-T | 15875381-A-T | P7_Prx | ** | ||||||
18132046-C-A | 16020166-C-A | ** | |||||||
18189676-C-A | 16077796-C-A | ** | |||||||
18753432-G-T | 16641552-G-T | ** | |||||||
18778867-T-C | 16666987-T-C | ** | |||||||
18791434-A-T | 16679554-A-T | ** | |||||||
18796504-A-G | 16684624-A-G | ** | |||||||
18812082-TC-T | 16700202-TC-T | ** | |||||||
18858571-C-T | 16746691-C-T | FTB56805 | ** | ||||||
18915245-A-G | 16803365-A-G | ** | |||||||
18937549-C-A | 16825669-C-A | ** | |||||||
19071744-C-A | 16959864-C-A | ** | |||||||
19075569-T-C | 16963689-T-C | ** | |||||||
19112580-C-A | 17000700-C-A | ** | |||||||
19547302-AAA-C | 17435422-AAA-C | ** | |||||||
20671503-A-AT | 18509617-A-AT | P4_Prx | ** | ||||||
20700637-A-G | 18538751-A-G | P4_Prx | ** | ||||||
20932630-C-CAAA | 18770744-C-CAAA | P4_Dst | ** | ||||||
21042968-T-C | 18881082-T-C | ** | |||||||
21224852-C-T | 19062966-C-T | ** | |||||||
21246232-C-A | 19084346-C-A | ** | |||||||
21320480-G-T | 19158594-G-T | ** | |||||||
21368813-G-A | 19206927-G-A | FT46672 | ** | ||||||
21382183-C-A | 19220297-C-A | ** | |||||||
21446330-CT-C | 19284444-CT-C | ** | |||||||
21457693-G-A | 19295807-G-A | ** | |||||||
21498964-A-T | 19337078-A-T | ** | |||||||
21582301-G-A | 19420415-G-A | ** | |||||||
21624506-C-A | 19462620-C-A | ** | |||||||
21698299-C-T | 19536413-C-T | ** | |||||||
21821649-C-A | 19659763-C-A | ** | |||||||
21875754-C-T | 19713868-C-T | ** | |||||||
21922047-C-A | 19760161-C-A | ** | |||||||
21939960-C-A | 19778074-C-A | ** | |||||||
21967255-G-A | 19805369-G-A | ** | |||||||
22051371-T-G | 19889485-T-G | ** | |||||||
22210582-C-A | 20048696-C-A | ** | |||||||
22263628-C-T | 20101742-C-T | DYZ19 | ** | ||||||
22580075-T-A | 20418189-T-A | ** | |||||||
22602421-G-A | 20440535-G-A | ** | |||||||
22650934-C-A | 20489048-C-A | ** | |||||||
22662120-T-A | 20500234-T-A | ** | |||||||
22797610-T-A | 20635724-T-A | ** | |||||||
22811917-T-A | 20650031-T-A | ** | |||||||
22996949-A-G | 20835063-A-G | ** | |||||||
22997012-T-TTA | 20835126-T-TTA | ** | |||||||
23039348-A-G | 20877462-A-G | ** | |||||||
23082182-A-T | 20920296-A-T | ** | |||||||
23143087-T-C | 20981201-T-C | ** | |||||||
23419035-A-G | 21257149-A-G | ** | |||||||
23440396-C-A | 21278510-C-A | ** | |||||||
23517890-C-A | 21356004-C-A | ** | |||||||
23563850-C-A | 21401964-C-A | ** | |||||||
23569363-C-A | 21407477-C-A | ** | |||||||
21750741-T-A | ** | ||||||||
24303313-A-G | 22157166-A-G | P3_t1 | ** | ||||||
24406349-A-G | 22260202-A-G | ** | |||||||
24406920-G-A | 22260773-G-A | ** | |||||||
25967686-T-A | 23821539-T-A | P1_Y1 | ** | ||||||
26013916-T-G | 23867769-T-G | P1_Y1 | ** | ||||||
26707430-TG-T | 24561283-TG-T | P1_g2 | ** | ||||||
27570904-G-A | 25424757-G-A | P1_Y2 | ** | ||||||
27824064-T-TTG | 25677917-T-TTG | P1_Y2 | ** | ||||||
27967218-GTA-G | 25821071-GTA-G | P1_Y2 | ** | ||||||
28469659-C-A | 26323512-C-A | ** | |||||||
28536464-G-A | 26390317-G-A | ** | |||||||
28594395-A-G | 26448248-A-G | ** | |||||||
28627252-G-T | 26481105-G-T | ** | |||||||
28633936-T-A | 26487789-T-A | ** | |||||||
28691942-C-A | 26545795-C-A | ** | |||||||
28692254-C-A | 26546107-C-A | ** | |||||||
28814898-G-T | 26668751-G-T | ** | |||||||
56850636-G-A | ** | ||||||||
56873909-C-A | ** | ||||||||
58831217-A-T | 56759654-T-A | *** | |||||||
13502359-C-T | 11346683-C-T | *** | |||||||
13745188-C-A | 11589512-C-A | *** | |||||||
13320566-A-G | 11164890-A-G | *** | |||||||
13448274-C-T | 11292598-C-T | *** | |||||||
9987775-A-C | 10150166-A-C | *** | |||||||
22250302-C-G | 20088416-C-G | DYZ19 | *** | ||||||
22437824-T-C | 20275938-T-C | DYZ19 | *** | ||||||
26139948-C-T | 23993801-C-T | P1_Y1 | *** | ||||||
27822486-G-A | 25676339-G-A | P1_Y2 | *** | ||||||
13447120-TC-T | 11291444-TC-T | *** | |||||||
19187385-ATTT-A,AT | 17075505-ATTT-A,AT | 28×T | *** | ||||||
3334524-G-T | 3466483-G-T | *** | |||||||
28800136-G-T | 26653989-G-T | *** | |||||||
28800139-G-T | 26653992-G-T | *** | |||||||
17169961-C-A | 15058081-C-A | *** | |||||||
9462103-G-T | 9624494-G-T | *** | |||||||
13461895-C-T | 11306219-C-T | *** | |||||||
56844520-C-A | *** | ||||||||
10023047-C-A | 10185438-C-A | *** | |||||||
16354883-GA-G | 14243003-GA-G | 9×A | *** | ||||||
7695681-C-A | 7827640-C-A | *** | |||||||
3790925-C-A | 3922884-C-A | *** | |||||||
16930558-G-T | 14818678-G-T | *** | |||||||
10657465-G-A | *** | ||||||||
11027300-C-T | *** | ||||||||
14697073-G-T | 12585139-G-T | *** | |||||||
16514348-C-A | 14402468-C-A | *** | |||||||
22429811-G-T | 20267925-G-T | DYZ19 | *** | ||||||
9978943-G-A | 10141334-G-A | DC851 | *** | ||||||
10764539-CATGCCAT-C,CATTCCAT | *** | ||||||||
10861123-A-G | *** | ||||||||
14717593-G-T | 12605661-G-T | *** | |||||||
14557586-A-G | 12445787-A-G | *** | |||||||
14530893-C-A | 12419094-C-A | *** | |||||||
14622800-C-T | 12510998-C-T | *** | |||||||
4992501-G-T | 5124460-G-T | *** | |||||||
5415256-G-T | 5547215-G-T | *** | |||||||
10806915-G-T | *** | ||||||||
13194225-C-A | 11038549-C-A | *** | |||||||
13271757-G-T | 11116081-G-T | *** | |||||||
13318028-A-T | 11162352-A-T | *** | |||||||
13462349-C-T | 11306673-C-T | *** | |||||||
13697145-G-T | 11541469-G-T | *** | |||||||
11657302-T-G | *** | ||||||||
17511699-T-C | 15399819-T-C | *** | |||||||
21464771-G-GTTCTTCTTCTTC | 19302885-G-GTTCTTCTTCTTC | 16×TTC | *** | ||||||
23128725-G-T | 20966839-G-T | *** | |||||||
23818066-A-T | 21656180-A-T | *** | |||||||
24475404-G-A | 22329257-G-A | *** | |||||||
28665162-C-A | 26519015-C-A | *** | |||||||
56839150-TC-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.