Carroll
FTDNA: 487839, BigY2: CarrollTree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 487839 | BigY2 Carroll |
---|---|---|---|---|---|---|---|---|---|
6848492-A-G | 6980451-A-G | BY18121 | Y | Y | + | + | |||
8482629-G-C | 8614588-G-C | Y87040 | Y | Y | + | + | |||
9439990-C-G | 9602381-C-G | Y88987 | Y | Y | + | + | |||
14094909-A-C | 11974203-A-C | Y90295 | Y | Y | + | + | |||
14870165-G-A | 12758235-G-A | Y92402 | Y | Y | + | + | |||
16368797-G-A | 14256917-G-A | Y96121 | Y | Y | + | + | |||
19432999-G-T | 17321119-G-T | Y104718 | Y | Y | + | + | |||
22539274-G-A | 20377388-G-A | Y109009 | Y | + | + | ||||
23043627-G-C | 20881741-G-C | A21186 | Y | Y | + | + | |||
16076204-T-C | 13964324-T-C | Y | *** | * | |||||
13254002-G-T | 11098326-G-T | BY43060 | 17×T | ** | |||||
21265267-C-T | 19103381-C-T | A7537 | A7557 | ** | |||||
7289473-C-A | 7421432-C-A | A20684 | ** | ||||||
9942071-TG-T | 10104462-TG-T | ** | |||||||
59004615-AGAAG-A | 56858468-AGAAG-A | ** | |||||||
2907090-C-G | 3039049-C-G | Z18500 | ** | ||||||
4779928-T-C | 4911887-T-C | Z24489 | ** | ||||||
14103159-C-A | 11982453-C-A | ZS791 | ** | ||||||
27417760-TTA-T | 25271613-TTA-T | P1_g3 | 24×TA | ** | |||||
13480428-A-T | 11324752-A-T | ** | |||||||
26514931-TCA-T | 24368784-TCA-T | P1_Y1 | 9×CA | ** | |||||
13480307-G-A | 11324631-G-A | ** | |||||||
5073537-T-C | 5205496-T-C | ** | |||||||
28797185-G-A | 26651038-G-A | FT462046 | *** | ** | |||||
19472529-GTTT-G | 17360649-GTTT-G | 13×T | ** | ||||||
16860748-GCAA-G | 14748868-GCAA-G | ** | |||||||
6944936-T-C | 7076895-T-C | ** | |||||||
13221870-A-C | 11066194-A-C | ** | |||||||
7935848-T-C | 8067807-T-C | ** | |||||||
21856792-C-A | 19694906-C-A | ** | |||||||
19469877-A-T | 17357997-A-T | 12×C | ** | ||||||
6700770-C-A | 6832729-C-A | ** | |||||||
10673922-C-CT | ** | ||||||||
20376671-C-A | 18214785-C-A | P5_Dst | ** | ||||||
21935074-C-A | 19773188-C-A | ** | |||||||
10925662-C-A | ** | ||||||||
19253222-G-T | 17141342-G-T | ** | |||||||
7188277-C-A | 7320236-C-A | ** | |||||||
10669403-C-T | ** | ||||||||
10669434-C-GGTAAA | ** | ||||||||
14764377-C-A | 12652446-C-A | ** | |||||||
15770378-C-A | 13658498-C-A | FT370047 | ** | ||||||
8913121-C-A | 9045080-C-A | ** | |||||||
5359132-G-T | 5491091-G-T | ** | |||||||
10971279-C-G | ** | ||||||||
10672441-C-T | ** | ||||||||
6491950-C-A | 6623909-C-A | ** | |||||||
10672425-C-A | ** | ||||||||
10672439-C-G | ** | ||||||||
10672445-T-A | ** | ||||||||
10672446-C-T | ** | ||||||||
10672451-C-T | ** | ||||||||
10672454-T-G | ** | ||||||||
10672461-C-T | FT428791 | ** | |||||||
10672464-G-C | ** | ||||||||
10672471-T-C | ** | ||||||||
10672475-A-T | ** | ||||||||
10672479-T-C | ** | ||||||||
16075403-C-A | 13963523-C-A | ** | |||||||
5243358-C-A | 5375317-C-A | ** | |||||||
6798906-A-C | 6930865-A-C | ** | |||||||
20989154-CATATATATATATAT-C | 18827268-CATATATATATATAT-C | P4_Dst | 19×AT | ** | |||||
7156973-C-A | 7288932-C-A | ** | |||||||
7146808-A-C | 7278767-A-C | ** | |||||||
10673855-C-G | ** | ||||||||
10673862-C-G | ** | ||||||||
10673914-A-ATTATG | ** | ||||||||
8736207-C-A | 8868166-C-A | ** | |||||||
10842549-C-G | ** | ||||||||
7186790-C-A | 7318749-C-A | ** | |||||||
18534203-C-T | 16422323-C-T | P6_Dst | ** | ||||||
10926653-C-A | ** | ||||||||
7311889-C-A | 7443848-C-A | ** | |||||||
16175191-C-A | 14063311-C-A | ** | |||||||
2845817-G-T | 2977776-G-T | ** | |||||||
14080035-G-GATATATAT | 11959329-G-GATATATAT | 29×AT | ** | ||||||
14324619-C-A | 12203913-C-A | ** | |||||||
28370119-C-A | 26223972-C-A | P1_gr2 | ** | ||||||
7759270-CCT-C | 7891229-CCT-C | ** | |||||||
10982290-T-G | ** | ||||||||
14076135-C-A | 11955429-C-A | ** | |||||||
10759201-C-T | ** | ||||||||
10759203-T-C | ** | ||||||||
10759206-T-C | ** | ||||||||
10759208-C-T | ** | ||||||||
10759148-C-T | ** | ||||||||
10759150-A-T | ** | ||||||||
10759157-A-T | ** | ||||||||
10759161-C-A | ** | ||||||||
10759163-T-G | ** | ||||||||
15662415-C-A | 13550535-C-A | ** | |||||||
14384356-G-T | 12263652-G-T | ** | |||||||
17023424-C-A | 14911544-C-A | ** | |||||||
24278024-T-A | 22131877-T-A | P3_b1 | ** | ||||||
20252773-T-G | 18090887-T-G | P5_Dst | ** | ||||||
6454618-C-A | 6586577-C-A | ** | |||||||
17581717-C-A | 15469837-C-A | ** | |||||||
8822510-C-A | 8954469-C-A | ** | |||||||
10925676-T-G | ** | ||||||||
10925699-C-CATTCA | ** | ||||||||
13887560-C-A | 11766854-C-A | ** | |||||||
16388008-C-A | 14276128-C-A | ** | |||||||
14909626-C-A | 12797693-C-A | ** | |||||||
21748288-C-A | 19586402-C-A | ** | |||||||
56884277-G-T | ** | ||||||||
13198620-C-A | 11042944-C-A | ** | |||||||
13485612-A-AG | 11329936-A-AG | ** | |||||||
13485615-TG-T | 11329939-TG-T | ** | |||||||
23190143-G-A | 21028257-G-A | ** | |||||||
16284089-C-A | 14172209-C-A | ** | |||||||
7670881-C-A | 7802840-C-A | ** | |||||||
19746913-C-A | 17635033-C-A | P5_Prx | ** | ||||||
28725922-C-A | 26579775-C-A | ** | |||||||
4244587-C-A | 4376546-C-A | ** | |||||||
22273557-C-A | 20111671-C-A | DYZ19 | ** | ||||||
21269700-C-A | 19107814-C-A | ** | |||||||
21748369-C-A | 19586483-C-A | ** | |||||||
2909200-C-A | 3041159-C-A | ** | |||||||
4302883-C-A | 4434842-C-A | ** | |||||||
7277590-C-A | 7409549-C-A | ** | |||||||
20582535-TA-T | 18420649-TA-T | P5_Dst | ** | ||||||
13472208-C-A | 11316532-C-A | ** | |||||||
8746280-C-A | 8878239-C-A | ** | |||||||
10757199-C-A | ** | ||||||||
2766803-C-A | 2898762-C-A | ** | |||||||
2985336-C-A | 3117295-C-A | ** | |||||||
3120741-G-T | 3252700-G-T | ** | |||||||
3120799-G-T | 3252758-G-T | ** | |||||||
3178931-C-A | 3310890-C-A | ** | |||||||
3263356-C-T | 3395315-C-T | ** | |||||||
3431525-G-T | 3563484-G-T | ** | |||||||
3546540-T-C | 3678499-T-C | ** | |||||||
3554311-G-C | 3686270-G-C | ** | |||||||
3593143-T-C | 3725102-T-C | ** | |||||||
3651277-G-T | 3783236-G-T | ** | |||||||
3681327-A-T | 3813286-A-T | ** | |||||||
3681335-G-T | 3813294-G-T | FTB34815 | ** | ||||||
3817410-C-G | 3949369-C-G | ** | |||||||
3817504-C-A | 3949463-C-A | ** | |||||||
3832123-C-A | 3964082-C-A | ** | |||||||
3849087-C-A | 3981046-C-A | ** | |||||||
4241775-A-G | 4373734-A-G | ** | |||||||
4282140-A-G | 4414099-A-G | ** | |||||||
4302075-T-A | 4434034-T-A | ** | |||||||
4444773-G-T | 4576732-G-T | ** | |||||||
4447332-TA-T | 4579291-TA-T | ** | |||||||
4527449-T-A | 4659408-T-A | ** | |||||||
4561003-C-A | 4692962-C-A | ** | |||||||
4580440-C-A | 4712399-C-A | ** | |||||||
4700860-C-A | 4832819-C-A | ** | |||||||
4728092-C-A | 4860051-C-A | ** | |||||||
4810332-A-G | 4942291-A-G | ** | |||||||
4889997-T-C | 5021956-T-C | ** | |||||||
4902025-C-A | 5033984-C-A | ** | |||||||
4975278-A-T | 5107237-A-T | ** | |||||||
4975342-G-A | 5107301-G-A | FGC52414 | ** | ||||||
5165449-C-A | 5297408-C-A | ** | |||||||
5204623-T-C | 5336582-T-C | ** | |||||||
5220968-G-C | 5352927-G-C | ** | |||||||
5294499-T-G | 5426458-T-G | ** | |||||||
5294540-T-C | 5426499-T-C | ** | |||||||
5303112-G-C | 5435071-G-C | ** | |||||||
5303138-T-C | 5435097-T-C | ** | |||||||
5358523-C-A | 5490482-C-A | FT145351 | ** | ||||||
5359547-G-T | 5491506-G-T | ** | |||||||
5489140-C-A | 5621099-C-A | ** | |||||||
5781949-A-C | 5913908-A-C | ** | |||||||
5817380-TG-T | 5949339-TG-T | ** | |||||||
5978295-G-C | 6110254-G-C | ** | |||||||
5978371-A-T | 6110330-A-T | FT259341 | ** | ||||||
6063431-T-C | 6195390-T-C | ** | |||||||
6359468-CCA-C | 6491427-CCA-C | ** | |||||||
6522528-G-T | 6654487-G-T | ** | |||||||
6646933-C-A | 6778892-C-A | ** | |||||||
6651413-T-A | 6783372-T-A | ** | |||||||
6693052-C-A | 6825011-C-A | ** | |||||||
6698909-C-A | 6830868-C-A | ** | |||||||
6798688-A-G | 6930647-A-G | ** | |||||||
6800597-C-A | 6932556-C-A | ** | |||||||
6830690-C-G | 6962649-C-G | ** | |||||||
6830747-A-G | 6962706-A-G | ** | |||||||
6874489-C-A | 7006448-C-A | ** | |||||||
6918411-C-A | 7050370-C-A | ** | |||||||
6953248-C-A | 7085207-C-A | ** | |||||||
6995112-T-G | 7127071-T-G | ** | |||||||
7019344-C-A | 7151303-C-A | ** | |||||||
7054268-G-A | 7186227-G-A | ** | |||||||
7064000-T-C | 7195959-T-C | ** | |||||||
7080591-A-T | 7212550-A-T | ** | |||||||
7106519-G-A | 7238478-G-A | ** | |||||||
7108222-C-A | 7240181-C-A | ** | |||||||
7133955-A-T | 7265914-A-T | ** | |||||||
7180198-G-T | 7312157-G-T | ** | |||||||
7185127-G-T | 7317086-G-T | ** | |||||||
7279538-A-G | 7411497-A-G | ** | |||||||
7302327-C-A | 7434286-C-A | ** | |||||||
7313227-C-T | 7445186-C-T | ** | |||||||
7333905-G-T | 7465864-G-T | ** | |||||||
7352980-C-A | 7484939-C-A | ** | |||||||
7362189-G-A | 7494148-G-A | ** | |||||||
7426236-C-A | 7558195-C-A | ** | |||||||
7468031-C-A | 7599990-C-A | IR1_L | ** | ||||||
7590454-A-T | 7722413-A-T | ** | |||||||
7636446-C-A | 7768405-C-A | ** | |||||||
7719467-C-A | 7851426-C-A | ** | |||||||
7885366-A-T | 8017325-A-T | ** | |||||||
8040098-C-A | 8172057-C-A | ** | |||||||
8092793-C-A | 8224752-C-A | ** | |||||||
8100516-T-A | 8232475-T-A | FT295181 | ** | ||||||
8171982-G-A | 8303941-G-A | ** | |||||||
8269614-T-C | 8401573-T-C | ** | |||||||
8290932-G-T | 8422891-G-T | ** | |||||||
8353182-C-A | 8485141-C-A | ** | |||||||
8379756-C-A | 8511715-C-A | ** | |||||||
8654139-A-T | 8786098-A-T | ** | |||||||
8842482-G-A | 8974441-G-A | ** | |||||||
8879499-C-A | 9011458-C-A | ** | |||||||
8911695-G-T | 9043654-G-T | FT123860 | FT123860 | ** | |||||
8913733-G-T | 9045692-G-T | ** | |||||||
9047669-G-A | 9210060-G-A | ** | |||||||
9063680-A-G | 9226071-A-G | ** | |||||||
9077064-G-T | 9239455-G-T | ** | |||||||
9140497-A-G | 9302888-A-G | ** | |||||||
9398077-C-T | 9560468-C-T | FT41106 | ** | ||||||
9503954-C-CA | 9666345-C-CA | ** | |||||||
9647573-G-T | 9809964-G-T | IR3_Prx | ** | ||||||
9706678-T-A | 9869069-T-A | IR3_Prx | ** | ||||||
9730621-C-A | 9893012-C-A | IR3_Prx | ** | ||||||
9953328-A-T | 10115719-A-T | ** | |||||||
9956514-C-G | 10118905-C-G | ** | |||||||
10029313-T-C | 10191704-T-C | ** | |||||||
10032717-C-A | 10195108-C-A | ** | |||||||
10033477-C-G | 10195868-C-G | ** | |||||||
10034496-C-A | 10196887-C-A | ** | |||||||
10646724-C-A | ** | ||||||||
10669295-C-A | ** | ||||||||
10677545-C-T | ** | ||||||||
10682494-C-CTCCAT | ** | ||||||||
10759115-A-C | ** | ||||||||
10759176-C-CTCTTCATTTT | ** | ||||||||
10760955-C-A | ** | ||||||||
10825189-C-A | ** | ||||||||
10835547-C-A | ** | ||||||||
10845646-C-CATTGT | ** | ||||||||
10845656-C-G | ** | ||||||||
10889243-C-A | ** | ||||||||
10955783-C-A | ** | ||||||||
10971265-C-CGAAAG | ** | ||||||||
13200447-C-T | 11044771-C-T | ** | |||||||
13200478-C-A | 11044802-C-A | ** | |||||||
13202778-G-A | 11047102-G-A | ** | |||||||
13215551-G-A | 11059875-G-A | FT441008 | ** | ||||||
13228724-G-C | 11073048-G-C | ** | |||||||
13230373-C-A | 11074697-C-A | ** | |||||||
13233114-G-A | 11077438-G-A | ** | |||||||
13245279-C-A | 11089603-C-A | ** | |||||||
13254528-A-T | 11098852-A-T | ** | |||||||
13294037-C-A | 11138361-C-A | ** | |||||||
13311514-T-G | 11155838-T-G | ** | |||||||
13320781-T-C | 11165105-T-C | ** | |||||||
13447871-C-A | 11292195-C-A | ** | |||||||
13453317-TGCA-T | 11297641-TGCA-T | ** | |||||||
13457713-G-C | 11302037-G-C | ** | |||||||
13457731-C-A | 11302055-C-A | ** | |||||||
13472228-A-G | 11316552-A-G | ** | |||||||
13480326-C-T | 11324650-C-T | ** | |||||||
13480335-G-C | 11324659-G-C | ** | |||||||
13484060-G-T | 11328384-G-T | ** | |||||||
13484071-G-C | 11328395-G-C | ** | |||||||
13484093-T-G | 11328417-T-G | ** | |||||||
13484113-C-T | 11328437-C-T | ** | |||||||
13484122-C-T | 11328446-C-T | ** | |||||||
13484126-G-A | 11328450-G-A | ** | |||||||
13484126-G-GT | 11328450-G-GT | ** | |||||||
13491231-T-G | 11335555-T-G | ** | |||||||
13504719-C-A | 11349043-C-A | ** | |||||||
13520789-C-G | 11365113-C-G | ** | |||||||
13578288-C-A | 11422612-C-A | FT445726 | ** | ||||||
13634036-A-G | 11478360-A-G | ** | |||||||
11643657-T-G | DYZ17 | ** | |||||||
11643710-A-C | DYZ17 | ** | |||||||
11644112-C-A | DYZ17 | ** | |||||||
11667345-G-A | FT271420 | DYZ17 | ** | ||||||
11672997-C-A | DYZ17 | ** | |||||||
13821325-A-G | 11700619-A-G | DYZ17 | ** | ||||||
13870882-C-A | 11750176-C-A | ** | |||||||
13894051-C-T | 11773345-C-T | ** | |||||||
13937398-C-A | 11816692-C-A | ** | |||||||
13940811-C-A | 11820105-C-A | ** | |||||||
14017650-T-A | 11896944-T-A | FT335212 | ** | ||||||
14021069-C-A | 11900363-C-A | ** | |||||||
14040863-A-C | 11920157-A-C | ** | |||||||
14253787-A-G | 12133081-A-G | ** | |||||||
14325014-T-C | 12204308-T-C | ** | |||||||
14364086-T-C | 12243381-T-C | ** | |||||||
14373496-A-G | 12252792-A-G | ** | |||||||
14380259-A-T | 12259555-A-T | ** | |||||||
14395113-C-A | 12274409-C-A | ** | |||||||
14415709-C-A | 12295006-C-A | ** | |||||||
14443076-A-G | 12322349-A-G | ** | |||||||
14452794-T-C | 12332067-T-C | ** | |||||||
14452795-G-A | 12332068-G-A | ** | |||||||
14468822-G-GAAA | 12348091-G-GAAA | 14×A | ** | ||||||
14471688-T-C | 12350957-T-C | ** | |||||||
14490195-C-A | 12369464-C-A | ** | |||||||
14540623-C-G | 12428824-C-G | ** | |||||||
14548215-C-A | 12436416-C-A | ** | |||||||
14646221-T-C | 12534285-T-C | ** | |||||||
14713076-A-T | 12601143-A-T | ** | |||||||
14721801-G-A | 12609869-G-A | ** | |||||||
14730221-T-A | 12618289-T-A | ** | |||||||
14799850-C-A | 12687921-C-A | ** | |||||||
14844509-C-A | 12732575-C-A | ** | |||||||
15045618-C-A | 12933708-C-A | ** | |||||||
15073152-G-C | 12961242-G-C | ** | |||||||
15104867-C-A | 12992955-C-A | ** | |||||||
15137908-T-A | 13025995-T-A | ** | |||||||
15221313-T-C | 13109399-T-C | ** | |||||||
15221321-C-G | 13109407-C-G | ** | |||||||
15221724-T-A | 13109810-T-A | ** | |||||||
15333518-G-T | 13221636-G-T | ** | |||||||
15403440-G-T | 13291560-G-T | ** | |||||||
15406741-C-A | 13294861-C-A | ** | |||||||
15433561-C-A | 13321681-C-A | ** | |||||||
15507855-C-A | 13395975-C-A | ** | |||||||
15664034-G-T | 13552154-G-T | ** | |||||||
15700573-C-G | 13588693-C-G | ** | |||||||
15734199-C-A | 13622319-C-A | ** | |||||||
15740374-A-T | 13628494-A-T | ** | |||||||
15741749-C-A | 13629869-C-A | ** | |||||||
15874239-T-C | 13762359-T-C | ** | |||||||
15898914-C-A | 13787034-C-A | ** | |||||||
15968270-T-C | 13856390-T-C | ** | |||||||
16028253-A-C | 13916373-A-C | ** | |||||||
16041725-T-A | 13929845-T-A | ** | |||||||
16041776-C-A | 13929896-C-A | ** | |||||||
16045854-G-A | 13933974-G-A | ** | |||||||
16232465-A-G | 14120585-A-G | ** | |||||||
16284129-C-A | 14172249-C-A | ** | |||||||
16298324-T-C | 14186444-T-C | ** | |||||||
16298394-C-A | 14186514-C-A | ** | |||||||
16429158-G-T | 14317278-G-T | ** | |||||||
16463936-T-C | 14352056-T-C | FTA39896 | ** | ||||||
16616648-T-C | 14504768-T-C | ** | |||||||
16905838-C-A | 14793958-C-A | ** | |||||||
16928742-C-A | 14816862-C-A | FT277494 | ** | ||||||
16950379-T-A | 14838499-T-A | ** | |||||||
17125891-T-A | 15014011-T-A | ** | |||||||
17167898-A-T | 15056018-A-T | ** | |||||||
17199616-A-T | 15087736-A-T | ** | |||||||
17217336-T-A | 15105456-T-A | ** | |||||||
17224469-A-G | 15112589-A-G | ** | |||||||
17285163-T-C | 15173283-T-C | ** | |||||||
17369332-C-A | 15257452-C-A | ** | |||||||
17470743-C-G | 15358863-C-G | ** | |||||||
17500615-G-T | 15388735-G-T | ** | |||||||
17517149-C-A | 15405269-C-A | ** | |||||||
17572071-C-G | 15460191-C-G | ** | |||||||
17591899-T-A | 15480019-T-A | ** | |||||||
17622373-G-A | 15510493-G-A | ** | |||||||
17668489-C-G | 15556609-C-G | ** | |||||||
17676538-C-A | 15564658-C-A | ** | |||||||
17864028-T-A | 15752148-T-A | FTB37390 | ** | ||||||
17870974-C-A | 15759094-C-A | ** | |||||||
17912859-T-A | 15800979-T-A | ** | |||||||
17912928-T-C | 15801048-T-C | ** | |||||||
17929157-A-C | 15817277-A-C | ** | |||||||
17942269-C-A | 15830389-C-A | ** | |||||||
18088240-C-A | 15976360-C-A | FT5822 | ** | ||||||
18154690-C-A | 16042810-C-A | ** | |||||||
18286767-A-G | 16174887-A-G | P6_Prx | ** | ||||||
18365612-A-AAT | 16253732-A-AAT | P6_Prx | ** | ||||||
18406449-C-A | 16294569-C-A | P6_Gap | ** | ||||||
18423828-C-T | 16311948-C-T | P6_Gap | ** | ||||||
18423829-A-C | 16311949-A-C | P6_Gap | ** | ||||||
18465360-T-A | 16353480-T-A | P6_Dst | ** | ||||||
18564896-TA-T | 16453016-TA-T | ** | |||||||
18759057-C-A | 16647177-C-A | ** | |||||||
18796531-A-G | 16684651-A-G | ** | |||||||
18816881-C-A | 16705001-C-A | ** | |||||||
18837401-G-T | 16725521-G-T | FT301979 | ** | ||||||
18895593-G-A | 16783713-G-A | ** | |||||||
18950787-C-A | 16838907-C-A | ** | |||||||
18993455-C-G | 16881575-C-G | ** | |||||||
19043828-A-T | 16931948-A-T | ** | |||||||
19086140-C-G | 16974260-C-G | ** | |||||||
19201059-A-T | 17089179-A-T | ** | |||||||
19213891-A-G | 17102011-A-G | ** | |||||||
19218207-T-A | 17106327-T-A | ** | |||||||
19293552-C-G | 17181672-C-G | ** | |||||||
19340431-G-T | 17228551-G-T | ** | |||||||
19528341-C-A | 17416461-C-A | ** | |||||||
19537927-G-GA | 17426047-G-GA | ** | |||||||
19817634-A-C | 17705754-A-C | P5_Prx | ** | ||||||
19849320-T-A | 17737440-T-A | P5_Prx | ** | ||||||
20104213-A-T | 17992333-A-T | P5_Dst | ** | ||||||
20339717-G-T | 18177831-G-T | P5_Dst | ** | ||||||
20881876-A-T | 18719990-A-T | P4_Dst | ** | ||||||
20881954-G-C | 18720068-G-C | P4_Dst | ** | ||||||
20921161-G-A | 18759275-G-A | P4_Dst | ** | ||||||
21127572-A-T | 18965686-A-T | ** | |||||||
21159045-G-C | 18997159-G-C | ** | |||||||
21203227-A-G | 19041341-A-G | ** | |||||||
21240265-C-A | 19078379-C-A | ** | |||||||
21260298-C-A | 19098412-C-A | ** | |||||||
21285088-C-A | 19123202-C-A | ** | |||||||
21317783-T-A | 19155897-T-A | ** | |||||||
21382167-T-G | 19220281-T-G | ** | |||||||
21382183-C-G | 19220297-C-G | ** | |||||||
21382192-C-G | 19220306-C-G | ** | |||||||
21460080-C-A | 19298194-C-A | ** | |||||||
21511220-A-T | 19349334-A-T | ** | |||||||
21624482-C-A | 19462596-C-A | ** | |||||||
21624762-T-G | 19462876-T-G | ** | |||||||
21725402-C-A | 19563516-C-A | ** | |||||||
21748246-T-G | 19586360-T-G | ** | |||||||
21818695-C-G | 19656809-C-G | ** | |||||||
21979849-T-C | 19817963-T-C | ** | |||||||
22125154-G-T | 19963268-G-T | ** | |||||||
22125707-T-C | 19963821-T-C | ** | |||||||
22146714-A-G | 19984828-A-G | ** | |||||||
22147177-C-A | 19985291-C-A | ** | |||||||
22154296-T-A | 19992410-T-A | ** | |||||||
22510534-A-G | 20348648-A-G | DYZ19 | ** | ||||||
22563077-C-A | 20401191-C-A | ** | |||||||
22732762-C-A | 20570876-C-A | ** | |||||||
22827306-C-A | 20665420-C-A | ** | |||||||
22877954-G-T | 20716068-G-T | ** | |||||||
22912768-T-C | 20750882-T-C | ** | |||||||
22916845-G-T | 20754959-G-T | ** | |||||||
22963738-C-A | 20801852-C-A | ** | |||||||
22995960-C-A | 20834074-C-A | ** | |||||||
23059103-C-A | 20897217-C-A | ** | |||||||
23128591-A-C | 20966705-A-C | ** | |||||||
23241972-T-G | 21080086-T-G | ** | |||||||
23411358-TGG-T | 21249472-TGG-T | ** | |||||||
23523617-G-C | 21361731-G-C | ** | |||||||
23648340-A-G | 21486454-A-G | ** | |||||||
23742157-A-G | 21580271-A-G | ** | |||||||
23838928-C-A | 21677042-C-A | ** | |||||||
21757666-G-T | ** | ||||||||
24109457-G-T | 21963310-G-T | P3_b1 | ** | ||||||
25980191-A-AATT | 23834044-A-AATT | P1_Y1 | ** | ||||||
26011854-T-C | 23865707-T-C | P1_Y1 | ** | ||||||
26334808-C-A | 24188661-C-A | P1_Y1 | ** | ||||||
27263090-A-G | 25116943-A-G | P1_g3 | ** | ||||||
28006857-C-A | 25860710-C-A | P1_Y2 | ** | ||||||
28462120-A-G | 26315973-A-G | ** | |||||||
28462121-G-T | 26315974-G-T | ** | |||||||
28478887-C-A | 26332740-C-A | ** | |||||||
28478988-C-A | 26332841-C-A | ** | |||||||
28480178-C-A | 26334031-C-A | ** | |||||||
28480186-A-G | 26334039-A-G | ** | |||||||
28484295-A-T | 26338148-A-T | ** | |||||||
28484304-G-T | 26338157-G-T | ** | |||||||
28484349-C-T | 26338202-C-T | ** | |||||||
28516832-C-A | 26370685-C-A | ** | |||||||
28527260-C-A | 26381113-C-A | ** | |||||||
28627202-A-C | 26481055-A-C | ** | |||||||
28632312-G-C | 26486165-G-C | Y113223 | ** | ||||||
28661661-T-G | 26515514-T-G | ** | |||||||
28661746-A-C | 26515599-A-C | ** | |||||||
28708948-C-A | 26562801-C-A | ** | |||||||
28743064-T-C | 26596917-T-C | ** | |||||||
28759421-G-A | 26613274-G-A | ** | |||||||
28769283-T-A | 26623136-T-A | ** | |||||||
28782047-C-A | 26635900-C-A | ** | |||||||
28801362-C-A | 26655215-C-A | ** | |||||||
56858432-AGAAAGAAG-A | 5×GAAAGAAG | ** | |||||||
13384641-G-C | 11228965-G-C | *** | |||||||
13833720-T-C | 11713014-T-C | DYZ17 | *** | ||||||
13843513-T-A | 11722807-T-A | DYZ17 | *** | ||||||
22424969-C-G | 20263083-C-G | DYZ19 | *** | ||||||
25307548-G-A | 23161401-G-A | P2_r1 | *** | ||||||
25381598-C-T | 23235451-C-T | P2_r2 | *** | ||||||
26012000-G-A | 23865853-G-A | P1_Y1 | *** | ||||||
13457711-G-T | 11302035-G-T | *** | |||||||
10807308-G-A,T | *** | ||||||||
22202044-C-A | 20040158-C-A | *** | |||||||
10669479-C-A | *** | ||||||||
18740854-A-T | 16628974-A-T | *** | |||||||
10776534-T-A,C | *** | ||||||||
21138715-C-A | 18976829-C-A | *** | |||||||
13485890-CCCA-C | 11330214-CCCA-C | *** | |||||||
13907905-C-A | 11787199-C-A | *** | |||||||
13611095-C-A | 11455419-C-A | *** | |||||||
10821918-A-T | *** | ||||||||
13234306-T-C | 11078630-T-C | *** | |||||||
10024131-C-A | 10186522-C-A | *** | |||||||
2901450-T-A | 3033409-T-A | *** | |||||||
5409728-TTTTCTTTCTTTCTTTC-T,TTTTCTTTC | 5541687-TTTTCTTTCTTTCTTTC-T,TTTTCTTTC | 18×TTTC | *** | ||||||
6213693-G-A | 6345652-G-A | IR3_Dst | *** | ||||||
7081100-C-G | 7213059-C-G | *** | |||||||
7188530-C-T | 7320489-C-T | *** | |||||||
7190491-C-A | 7322450-C-A | *** | |||||||
7619002-C-A | 7750961-C-A | *** | |||||||
7897448-G-T | 8029407-G-T | *** | |||||||
8002331-G-A | 8134290-G-A | *** | |||||||
8748637-C-A | 8880596-C-A | *** | |||||||
9038379-A-C | 9200770-A-C | FGC6639 | *** | ||||||
9508111-C-A | 9670502-C-A | *** | |||||||
9644861-C-A | 9807252-C-A | IR3_Prx | *** | ||||||
9875033-G-C | 10037424-G-C | *** | |||||||
10669458-C-G | *** | ||||||||
10807244-A-ATTCTT | *** | ||||||||
10807254-A-C | *** | ||||||||
11017845-C-A | *** | ||||||||
13294078-T-A | 11138402-T-A | *** | |||||||
13453314-C-CGTT | 11297638-C-CGTT | *** | |||||||
13659676-C-A | 11504000-C-A | DYZ17 | *** | ||||||
11643748-G-GTCATC | DYZ17 | *** | |||||||
13856692-C-A | 11735986-C-A | DYZ17 | *** | ||||||
14017724-C-A | 11897018-C-A | *** | |||||||
14066887-C-A | 11946181-C-A | *** | |||||||
14653197-ACT-A | 12541262-ACT-A | *** | |||||||
14696328-C-A | 12584394-C-A | *** | |||||||
15012296-CTTTTT-C,CTTTT | 12900384-CTTTTT-C,CTTTT | 17×T | *** | ||||||
15204608-C-A | 13092694-C-A | *** | |||||||
16354690-G-T | 14242810-G-T | *** | |||||||
16484096-A-ATT | 14372216-A-ATT | 12×T | *** | ||||||
16603183-AT-A | 14491303-AT-A | *** | |||||||
16710820-G-A | 14598940-G-A | *** | |||||||
17349145-G-T | 15237265-G-T | *** | |||||||
18164856-A-T | 16052976-A-T | *** | |||||||
18237680-A-G | 16125800-A-G | Y139000 | *** | ||||||
18573711-T-C | 16461831-T-C | *** | |||||||
18682423-C-A | 16570543-C-A | *** | |||||||
18906058-C-A | 16794178-C-A | *** | |||||||
18943924-A-G | 16832044-A-G | *** | |||||||
21370856-A-T | 19208970-A-T | *** | |||||||
22203956-T-C | 20042070-T-C | *** | |||||||
23754877-G-A | 21592991-G-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.