McCarthy
FTDNA: B23719, BigY2: B23719Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA B23719 | BigY2 B23719 |
---|---|---|---|---|---|---|---|---|---|
8497788-G-C | 8629747-G-C | BY73421 | Y | Y | + | + | |||
9859932-T-G | 10022323-T-G | BY81526 | Y | Y | + | + | |||
10025627-C-T | 10188018-C-T | BY53990 | Y | + | + | ||||
16183372-A-C | 14071492-A-C | BY105794 | Y | + | + | ||||
18632475-A-C | 16520595-A-C | BY122702 | Y | Y | + | + | |||
22945954-G-T | 20784068-G-T | BY141960 | Y | Y | + | + | |||
26463097-C-CT | 24316950-C-CT | P1_Y1 | 36×T | ** | |||||
17385445-T-G | 15273565-T-G | ** | |||||||
13565547-C-A | 11409871-C-A | ** | |||||||
58990472-G-T | 56844325-G-T | ** | |||||||
27423515-G-GTATATA | 25277368-G-GTATATA | P1_g3 | 24×TA | ** | |||||
13486763-A-G | 11331087-A-G | ** | |||||||
4301926-C-A | 4433885-C-A | ** | |||||||
14567102-G-A | 12455302-G-A | ** | |||||||
22490521-C-A | 20328635-C-A | DYZ19 | ** | ||||||
19127681-C-A | 17015801-C-A | ** | |||||||
5336829-G-T | 5468788-G-T | ** | |||||||
17193072-C-A | 15081192-C-A | ** | |||||||
22205002-G-T | 20043116-G-T | ** | |||||||
10958838-T-C | ** | ||||||||
14607659-G-T | 12495861-G-T | ** | |||||||
3725730-C-A | 3857689-C-A | ** | |||||||
6523723-C-A | 6655682-C-A | ** | |||||||
10986695-C-A | ** | ||||||||
21753865-C-A | ** | ||||||||
13594456-C-A | 11438780-C-A | ** | |||||||
10793676-A-C | ** | ||||||||
11012318-C-A | ** | ||||||||
7248538-C-A | 7380497-C-A | ** | |||||||
10692097-C-T | ** | ||||||||
10749162-A-C | ** | ||||||||
21068276-C-A | 18906390-C-A | ** | |||||||
14391665-C-A | 12270961-C-A | ** | |||||||
10900724-C-A | ** | ||||||||
10865885-G-T | ** | ||||||||
15995227-C-A | 13883347-C-A | ** | |||||||
5359683-G-T | 5491642-G-T | ** | |||||||
14324921-GA-G | 12204215-GA-G | ** | |||||||
10653658-C-A | ** | ||||||||
6510189-C-A | 6642148-C-A | ** | |||||||
2773337-A-T | 2905296-A-T | ** | |||||||
2814877-TAAA-T | 2946836-TAAA-T | 14×A | ** | ||||||
2895220-C-A | 3027179-C-A | ** | |||||||
2929497-C-A | 3061456-C-A | ** | |||||||
2947766-G-A | 3079725-G-A | ** | |||||||
2947813-G-A | 3079772-G-A | ** | |||||||
3046708-T-G | 3178667-T-G | ** | |||||||
3060126-T-C | 3192085-T-C | ** | |||||||
3072644-G-C | 3204603-G-C | ** | |||||||
3082844-C-A | 3214803-C-A | ** | |||||||
3082856-TA-T | 3214815-TA-T | 8×A | ** | ||||||
3194557-C-A | 3326516-C-A | ** | |||||||
3249744-G-T | 3381703-G-T | ** | |||||||
3270984-G-T | 3402943-G-T | ** | |||||||
3327783-C-A | 3459742-C-A | ** | |||||||
3385725-C-A | 3517684-C-A | ** | |||||||
3436247-C-A | 3568206-C-A | ** | |||||||
3444541-A-T | 3576500-A-T | ** | |||||||
3492810-A-T | 3624769-A-T | ** | |||||||
3546827-C-A | 3678786-C-A | ** | |||||||
3591044-T-C | 3723003-T-C | ** | |||||||
3620738-C-A | 3752697-C-A | ** | |||||||
3625702-C-A | 3757661-C-A | ** | |||||||
3804478-C-A | 3936437-C-A | ** | |||||||
3835091-A-T | 3967050-A-T | ** | |||||||
3889502-G-A | 4021461-G-A | ** | |||||||
3926011-C-A | 4057970-C-A | ** | |||||||
3965212-A-T | 4097171-A-T | ** | |||||||
3986096-C-A | 4118055-C-A | ** | |||||||
4042660-C-A | 4174619-C-A | ** | |||||||
4120071-G-T | 4252030-G-T | ** | |||||||
4130136-T-C | 4262095-T-C | ** | |||||||
4138181-C-G | 4270140-C-G | ** | |||||||
4246498-T-C | 4378457-T-C | ** | |||||||
4281512-A-T | 4413471-A-T | ** | |||||||
4430026-G-T | 4561985-G-T | ** | |||||||
4444107-C-A | 4576066-C-A | ** | |||||||
4519370-G-T | 4651329-G-T | ** | |||||||
4616573-T-G | 4748532-T-G | ** | |||||||
4816187-T-C | 4948146-T-C | ** | |||||||
4983488-C-A | 5115447-C-A | ** | |||||||
4989861-A-G | 5121820-A-G | ** | |||||||
5004162-C-A | 5136121-C-A | ** | |||||||
5033630-T-G | 5165589-T-G | ** | |||||||
5033666-C-T | 5165625-C-T | ** | |||||||
5172411-C-A | 5304370-C-A | ** | |||||||
5180731-C-A | 5312690-C-A | ** | |||||||
5186763-T-G | 5318722-T-G | ** | |||||||
5201575-G-C | 5333534-G-C | ** | |||||||
5231038-C-A | 5362997-C-A | ** | |||||||
5279783-G-T | 5411742-G-T | ** | |||||||
5297667-A-G | 5429626-A-G | ** | |||||||
5381004-G-T | 5512963-G-T | ** | |||||||
5507383-A-C | 5639342-A-C | ** | |||||||
5507534-A-C | 5639493-A-C | ** | |||||||
5523826-A-T | 5655785-A-T | ** | |||||||
5585977-C-T | 5717936-C-T | ** | |||||||
5586681-C-A | 5718640-C-A | ** | |||||||
5613522-C-A | 5745481-C-A | ** | |||||||
5662082-G-T | 5794041-G-T | ** | |||||||
5674499-T-A | 5806458-T-A | ** | |||||||
5808715-C-CAG | 5940674-C-CAG | ** | |||||||
5808748-G-A | 5940707-G-A | ** | |||||||
5817764-A-C | 5949723-A-C | ** | |||||||
5853692-G-T | 5985651-G-T | ** | |||||||
5858305-C-A | 5990264-C-A | ** | |||||||
5887763-C-A | 6019722-C-A | ** | |||||||
5905356-G-A | 6037315-G-A | ** | |||||||
5937494-A-G | 6069453-A-G | ** | |||||||
5969965-G-A | 6101924-G-A | ** | |||||||
6010315-C-T | 6142274-C-T | ** | |||||||
6024627-C-A | 6156586-C-A | ** | |||||||
6085330-C-A | 6217289-C-A | ** | |||||||
6086036-T-C | 6217995-T-C | ** | |||||||
6368921-G-T | 6500880-G-T | ** | |||||||
6419315-C-A | 6551274-C-A | ** | |||||||
6453916-C-A | 6585875-C-A | ** | |||||||
6490704-C-A | 6622663-C-A | ** | |||||||
6490801-C-A | 6622760-C-A | ** | |||||||
6510812-C-A | 6642771-C-A | ** | |||||||
6596371-C-A | 6728330-C-A | ** | |||||||
6646916-A-G | 6778875-A-G | ** | |||||||
6734751-C-A | 6866710-C-A | ** | |||||||
6749059-T-C | 6881018-T-C | ** | |||||||
6790928-C-A | 6922887-C-A | ** | |||||||
6822556-C-A | 6954515-C-A | ** | |||||||
6892226-T-C | 7024185-T-C | ** | |||||||
6911604-T-G | 7043563-T-G | ** | |||||||
6916027-C-A | 7047986-C-A | ** | |||||||
6916042-C-A | 7048001-C-A | ** | |||||||
7011481-T-C | 7143440-T-C | ** | |||||||
7011482-G-A | 7143441-G-A | ** | |||||||
7011485-A-G | 7143444-A-G | ** | |||||||
7011495-G-A | 7143454-G-A | ** | |||||||
7011499-A-G | 7143458-A-G | ** | |||||||
7103490-G-A | 7235449-G-A | ** | |||||||
7107268-A-G | 7239227-A-G | ** | |||||||
7142874-C-A | 7274833-C-A | ** | |||||||
7154873-C-A | 7286832-C-A | ** | |||||||
7156079-G-T | 7288038-G-T | ** | |||||||
7210048-T-A | 7342007-T-A | ** | |||||||
7242512-C-G | 7374471-C-G | ** | |||||||
7299223-C-CA | 7431182-C-CA | ** | |||||||
7348463-C-T | 7480422-C-T | ** | |||||||
7380996-G-T | 7512955-G-T | ** | |||||||
7424448-C-A | 7556407-C-A | ** | |||||||
7590701-C-T | 7722660-C-T | ** | |||||||
7969374-C-A | 8101333-C-A | ** | |||||||
8135774-C-A | 8267733-C-A | ** | |||||||
8235570-G-T | 8367529-G-T | ** | |||||||
8345775-C-A | 8477734-C-A | ** | |||||||
8848386-T-C | 8980345-T-C | ** | |||||||
8849803-C-A | 8981762-C-A | ** | |||||||
8912688-T-C | 9044647-T-C | ** | |||||||
9121733-G-T | ** | ||||||||
9122316-G-T | ** | ||||||||
9063678-C-A | 9226069-C-A | ** | |||||||
9063859-C-A | 9226250-C-A | 16×T | ** | ||||||
9402579-T-C | 9564970-T-C | ** | |||||||
9721650-C-A | 9884041-C-A | IR3_Prx | ** | ||||||
9824145-C-A | 9986536-C-A | ** | |||||||
9885266-C-A | 10047657-C-A | ** | |||||||
9925363-T-A | 10087754-T-A | ** | |||||||
9925372-A-G | 10087763-A-G | ** | |||||||
9925378-T-G | 10087769-T-G | ** | |||||||
9945196-G-T | 10107587-G-T | ** | |||||||
9976603-GC-G | 10138994-GC-G | ** | |||||||
10023034-A-G | 10185425-A-G | ** | |||||||
10057981-A-G | 10220372-A-G | ** | |||||||
10059503-T-C | 10221894-T-C | ** | |||||||
10653072-CCT-C | ** | ||||||||
10654424-C-A | ** | ||||||||
10655678-G-T | ** | ||||||||
10678509-G-T | ** | ||||||||
10683506-GTTCCA-G | ** | ||||||||
10692465-T-C | ** | ||||||||
10693607-C-T | ** | ||||||||
10746887-C-T | ** | ||||||||
10746892-C-T | ** | ||||||||
10746912-C-G | ** | ||||||||
10749151-T-C | ** | ||||||||
10757987-C-A | ** | ||||||||
10761628-T-C | FGC77093 | ** | |||||||
10764336-C-A | FGC80746 | ** | |||||||
10780289-G-C | ** | ||||||||
10780491-C-T | ** | ||||||||
10780497-C-A | ** | ||||||||
10780505-C-T | FT132254 | ** | |||||||
10780520-T-A | ** | ||||||||
10780533-C-G | ** | ||||||||
10780551-C-G | ** | ||||||||
10780553-AC-G | ** | ||||||||
10780585-G-A | ** | ||||||||
10791289-T-C | ** | ||||||||
10793620-C-T | FT431450 | ** | |||||||
10793635-C-A | ** | ||||||||
10793639-A-C | ** | ||||||||
10793649-C-T | ** | ||||||||
10793654-C-G | ** | ||||||||
10793667-C-CACTCTG | ** | ||||||||
10793672-A-C | ** | ||||||||
10793680-C-A | ** | ||||||||
10793683-C-T | ** | ||||||||
10793688-T-C | ** | ||||||||
10793712-AT-A | ** | ||||||||
10793718-ATTCTT-A | ** | ||||||||
10793728-T-C | ** | ||||||||
10793743-G-C | ** | ||||||||
10805979-G-T | ** | ||||||||
10808217-A-T | ** | ||||||||
10808227-G-T | ** | ||||||||
10808234-T-C | ** | ||||||||
10814352-G-T | ** | ||||||||
10816411-G-T | ** | ||||||||
10822579-G-T | ** | ||||||||
10822695-G-T | ** | ||||||||
10826893-C-CCATTA | ** | ||||||||
10830828-T-C | ** | ||||||||
10840376-C-A | ** | ||||||||
10840436-C-A | ** | ||||||||
10844951-T-C | ** | ||||||||
10868181-C-A | ** | ||||||||
10875620-C-A | ** | ||||||||
10876067-A-T | ** | ||||||||
10894121-C-A | ** | ||||||||
10894870-T-A | ** | ||||||||
10899854-TC-T | ** | ||||||||
10909162-G-T | ** | ||||||||
10924246-TC-T | ** | ||||||||
10936784-C-A | ** | ||||||||
10938664-C-A | ** | ||||||||
10939826-A-C | ** | ||||||||
10942417-C-A | ** | ||||||||
10944896-C-A | ** | ||||||||
10958819-T-A | ** | ||||||||
10967639-G-T | ** | ||||||||
10976061-CCACT-C | ** | ||||||||
10992672-C-A | ** | ||||||||
10993170-C-A | ** | ||||||||
10996838-C-A | ** | ||||||||
11000266-C-A | ** | ||||||||
11003288-C-A | ** | ||||||||
11018273-C-A | ** | ||||||||
11027655-C-A | ** | ||||||||
11034877-G-C | ** | ||||||||
11037802-G-T | ** | ||||||||
13197895-C-A | 11042219-C-A | ** | |||||||
13271515-G-A | 11115839-G-A | ** | |||||||
13315628-T-A | 11159952-T-A | ** | |||||||
13317678-C-A | 11162002-C-A | ** | |||||||
13319222-T-G | 11163546-T-G | ** | |||||||
13327659-C-A | 11171983-C-A | ** | |||||||
13350672-C-A | 11194996-C-A | ** | |||||||
13398948-C-A | 11243272-C-A | ** | |||||||
13480436-T-G | 11324760-T-G | ** | |||||||
13480474-T-A | 11324798-T-A | ** | |||||||
13486842-A-T | 11331166-A-T | ** | |||||||
13486844-G-A | 11331168-G-A | ** | |||||||
13494355-C-A | 11338679-C-A | ** | |||||||
13559120-C-A | 11403444-C-A | ** | |||||||
13564630-A-G | 11408954-A-G | ** | |||||||
13565646-C-A | 11409970-C-A | FT445425 | ** | ||||||
13586220-A-G | 11430544-A-G | ** | |||||||
13624934-C-A | 11469258-C-A | ** | |||||||
13644795-C-A | 11489119-C-A | ** | |||||||
13692761-A-G | 11537085-A-G | ** | |||||||
13692762-A-G | 11537086-A-G | ** | |||||||
11644702-C-A | ** | ||||||||
11647862-A-G | ** | ||||||||
11658357-G-A | ** | ||||||||
11660351-C-A | ** | ||||||||
11669827-A-G | ** | ||||||||
11672493-C-A | ** | ||||||||
13856500-C-A | 11735794-C-A | ** | |||||||
13860604-C-A | 11739898-C-A | ** | |||||||
13872119-C-A | 11751413-C-A | ** | |||||||
13927345-C-A | 11806639-C-A | ** | |||||||
13939944-A-T | 11819238-A-T | ** | |||||||
13941129-C-A | 11820423-C-A | ** | |||||||
13952552-A-G | 11831846-A-G | ** | |||||||
13974830-T-C | 11854124-T-C | FT174999 | ** | ||||||
13981648-C-A | 11860942-C-A | ** | |||||||
13997592-C-A | 11876886-C-A | ** | |||||||
13999253-C-A | 11878547-C-A | ** | |||||||
14021434-C-A | 11900728-C-A | ** | |||||||
14042713-G-T | 11922007-G-T | ** | |||||||
14050630-C-A | 11929924-C-A | ** | |||||||
14052995-C-A | 11932289-C-A | ** | |||||||
14142260-C-A | 12021554-C-A | ** | |||||||
14225636-C-A | 12104930-C-A | ** | |||||||
14267232-C-A | 12146526-C-A | ** | |||||||
14295452-C-A | 12174746-C-A | ** | |||||||
14300134-C-A | 12179428-C-A | ** | |||||||
14311779-C-A | 12191073-C-A | ** | |||||||
14351301-C-A | 12230596-C-A | ** | |||||||
14355442-G-A | 12234737-G-A | ** | |||||||
14405705-C-A | 12285002-C-A | ** | |||||||
14420464-C-A | 12299739-C-A | ** | |||||||
14422410-A-G | 12301685-A-G | ** | |||||||
14430386-T-G | 12309659-T-G | ** | |||||||
14456755-T-C | 12336028-T-C | ** | |||||||
14462604-C-A | 12341877-C-A | ** | |||||||
14464344-T-A | 12343617-T-A | ** | |||||||
14473625-C-A | 12352894-C-A | ** | |||||||
14474704-G-A | 12353973-G-A | ** | |||||||
14493288-C-A | 12381485-C-A | ** | |||||||
14544175-T-G | 12432376-T-G | ** | |||||||
14567108-G-T | 12455308-G-T | ** | |||||||
14575790-C-A | 12463990-C-A | ** | |||||||
14575874-C-A | 12464074-C-A | ** | |||||||
14754093-TTG-T | 12642162-TTG-T | ** | |||||||
14986122-C-A | 12874190-C-A | ** | |||||||
15044942-C-A | 12933032-C-A | 8×T | ** | ||||||
15092398-C-A | 12980487-C-A | ** | |||||||
15093673-T-C | 12981761-T-C | ** | |||||||
15333932-C-A | 13222050-C-A | ** | |||||||
15424629-G-C | 13312749-G-C | ** | |||||||
15429498-C-A | 13317618-C-A | ** | |||||||
15439934-C-A | 13328054-C-A | ** | |||||||
15475013-G-C | 13363133-G-C | ** | |||||||
15532996-GA-G | 13421116-GA-G | 8×A | ** | ||||||
15536317-C-A | 13424437-C-A | ** | |||||||
15558038-C-A | 13446158-C-A | ** | |||||||
15605474-C-A | 13493594-C-A | ** | |||||||
15686833-T-A | 13574953-T-A | ** | |||||||
15748924-C-A | 13637044-C-A | ** | |||||||
15789164-T-C | 13677284-T-C | ** | |||||||
15832324-C-T | 13720444-C-T | ** | |||||||
15921993-G-T | 13810113-G-T | ** | |||||||
15928673-C-A | 13816793-C-A | ** | |||||||
15995277-T-C | 13883397-T-C | ** | |||||||
16039053-C-A | 13927173-C-A | ** | |||||||
16050069-C-A | 13938189-C-A | ** | |||||||
16050267-A-G | 13938387-A-G | ** | |||||||
16090498-T-G | 13978618-T-G | ** | |||||||
16172217-C-G | 14060337-C-G | ** | |||||||
16228031-C-A | 14116151-C-A | ** | |||||||
16309042-G-A | 14197162-G-A | ** | |||||||
16383521-C-A | 14271641-C-A | ** | |||||||
16423465-T-G | 14311585-T-G | ** | |||||||
16429608-C-A | 14317728-C-A | ** | |||||||
16479936-A-G | 14368056-A-G | ** | |||||||
16522782-C-A | 14410902-C-A | FTB21458 | ** | ||||||
16559722-C-A | 14447842-C-A | ** | |||||||
16602623-C-A | 14490743-C-A | ** | |||||||
16616687-A-T | 14504807-A-T | ** | |||||||
16666227-C-A | 14554347-C-A | ** | |||||||
16868756-T-C | 14756876-T-C | ** | |||||||
16905840-C-A | 14793960-C-A | ** | |||||||
16926746-A-T | 14814866-A-T | ** | |||||||
16993422-G-T | 14881542-G-T | ** | |||||||
17006471-TTA-T | 14894591-TTA-T | ** | |||||||
17006487-C-T | 14894607-C-T | ** | |||||||
17006492-G-GTT | 14894612-G-GTT | ** | |||||||
17064986-G-A | 14953106-G-A | ** | |||||||
17095518-C-A | 14983638-C-A | ** | |||||||
17118445-A-G | 15006565-A-G | ** | |||||||
17153712-T-C | 15041832-T-C | ** | |||||||
17224334-C-A | 15112454-C-A | ** | |||||||
17338446-A-G | 15226566-A-G | ** | |||||||
17374988-C-A | 15263108-C-A | ** | |||||||
17385401-C-A | 15273521-C-A | ** | |||||||
17385437-T-A | 15273557-T-A | ** | |||||||
17385450-T-G | 15273570-T-G | ** | |||||||
17426950-C-A | 15315070-C-A | ** | |||||||
17455770-C-A | 15343890-C-A | ** | |||||||
17534912-C-A | 15423032-C-A | ** | |||||||
17569141-C-A | 15457261-C-A | ** | |||||||
17884582-C-T | 15772702-C-T | ** | |||||||
18022304-C-A | 15910424-C-A | ** | |||||||
18154485-TA-T | 16042605-TA-T | ** | |||||||
18412287-C-A | 16300407-C-A | P6_Gap | ** | ||||||
18465586-G-T | 16353706-G-T | P6_Dst | ** | ||||||
18518299-CA-C | 16406419-CA-C | P6_Dst | ** | ||||||
18618058-G-T | 16506178-G-T | ** | |||||||
18712835-C-A | 16600955-C-A | ** | |||||||
18736464-C-A | 16624584-C-A | ** | |||||||
18791076-G-T | 16679196-G-T | ** | |||||||
18864424-A-G | 16752544-A-G | FT272070 | ** | ||||||
18891118-C-A | 16779238-C-A | ** | |||||||
18915244-C-A | 16803364-C-A | ** | |||||||
18987496-A-G | 16875616-A-G | ** | |||||||
18990282-C-A | 16878402-C-A | ** | |||||||
19062995-G-T | 16951115-G-T | ** | |||||||
19065953-C-A | 16954073-C-A | ** | |||||||
19088271-T-C | 16976391-T-C | ** | |||||||
19088279-C-A | 16976399-C-A | ** | |||||||
19130772-G-A | 17018892-G-A | ** | |||||||
19206691-A-G | 17094811-A-G | ** | |||||||
19329494-A-T | 17217614-A-T | ** | |||||||
19464279-CT-C | 17352399-CT-C | ** | |||||||
19528617-T-A | 17416737-T-A | ** | |||||||
19686222-T-C | 17574342-T-C | P5_Prx | ** | ||||||
19847664-GT-G | 17735784-GT-G | P5_Prx | ** | ||||||
19925906-A-C | 17814026-A-C | P5_Prx | ** | ||||||
20252777-T-G | 18090891-T-G | P5_Dst | ** | ||||||
20279584-TA-T | 18117698-TA-T | P5_Dst | ** | ||||||
20574919-A-G | 18413033-A-G | P5_Dst | ** | ||||||
20661763-T-A | 18499877-T-A | P4_Prx | ** | ||||||
20741858-T-C | 18579972-T-C | P4_Prx | ** | ||||||
20775747-A-T | 18613861-A-T | P4_Prx | ** | ||||||
20825548-G-A | 18663662-G-A | P4_Gap | ** | ||||||
20949809-G-T | 18787923-G-T | P4_Dst | ** | ||||||
21153531-A-T | 18991645-A-T | ** | |||||||
21242124-C-A | 19080238-C-A | ** | |||||||
21262676-A-C | 19100790-A-C | ** | |||||||
21363105-AAG-A | 19201219-AAG-A | ** | |||||||
21411717-GCAAAA-G | 19249831-GCAAAA-G | ** | |||||||
21457187-G-C | 19295301-G-C | ** | |||||||
21475940-C-A | 19314054-C-A | ** | |||||||
21602795-G-A | 19440909-G-A | FT134737 | ** | ||||||
21819057-T-A | 19657171-T-A | ** | |||||||
21902225-C-A | 19740339-C-A | ** | |||||||
22052478-C-A | 19890592-C-A | ** | |||||||
22064126-C-A | 19902240-C-A | ** | |||||||
22077078-AT-A | 19915192-AT-A | ** | |||||||
22084777-A-C | 19922891-A-C | ** | |||||||
22088827-A-G | 19926941-A-G | ** | |||||||
22091340-A-G | 19929454-A-G | ** | |||||||
22188802-A-G | 20026916-A-G | ** | |||||||
22564663-C-A | 20402777-C-A | ** | |||||||
22781913-C-A | 20620027-C-A | ** | |||||||
22836879-C-A | 20674993-C-A | ** | |||||||
22837745-A-G | 20675859-A-G | ** | |||||||
22857533-C-A | 20695647-C-A | ** | |||||||
22882448-C-A | 20720562-C-A | ** | |||||||
22988942-C-A | 20827056-C-A | ** | |||||||
22994974-C-A | 20833088-C-A | ** | |||||||
23066803-C-A | 20904917-C-A | ** | |||||||
23340348-C-A | 21178462-C-A | ** | |||||||
23340363-C-A | 21178477-C-A | ** | |||||||
23773925-A-T | 21612039-A-T | ** | |||||||
25096513-GAA-G | 22950366-GAA-G | g1 | ** | ||||||
25591024-G-A | 23444877-G-A | P1_gr1 | ** | ||||||
25889843-TA-T | 23743696-TA-T | P1_Y1 | ** | ||||||
25953988-A-C | 23807841-A-C | P1_Y1 | ** | ||||||
25971296-C-A | 23825149-C-A | P1_Y1 | ** | ||||||
25980320-G-C | 23834173-G-C | P1_Y1 | ** | ||||||
27937075-C-T | 25790928-C-T | P1_Y2 | ** | ||||||
28500125-C-A | 26353978-C-A | ** | |||||||
28516761-T-G | 26370614-T-G | ** | |||||||
28529766-T-C | 26383619-T-C | ** | |||||||
28558622-T-C | 26412475-T-C | ** | |||||||
28560778-T-C | 26414631-T-C | ** | |||||||
28567333-ATT-A | 26421186-ATT-A | 13×T | ** | ||||||
28608433-C-A | 26462286-C-A | ** | |||||||
28615539-T-G | 26469392-T-G | ** | |||||||
28617314-A-C | 26471167-A-C | ** | |||||||
28617318-G-A | 26471171-G-A | ** | |||||||
28617492-C-A | 26471345-C-A | ** | |||||||
28617519-T-A | 26471372-T-A | ** | |||||||
28622104-G-T | 26475957-G-T | ** | |||||||
28699840-C-A | 26553693-C-A | ** | |||||||
28703522-C-A | 26557375-C-A | ** | |||||||
28720157-G-TT | 26574010-G-TT | ** | |||||||
28720159-G-A | 26574012-G-A | ** | |||||||
28732061-A-G | 26585914-A-G | ** | |||||||
28743742-C-A | 26597595-C-A | ** | |||||||
28764924-C-A | 26618777-C-A | ** | |||||||
28764930-C-T | 26618783-C-T | ** | |||||||
28797826-T-G | 26651679-T-G | ** | |||||||
28804621-G-A | 26658474-G-A | ** | |||||||
56840948-G-T | ** | ||||||||
56847565-C-A | ** | ||||||||
56850874-G-T | ** | ||||||||
56858447-A-T | ** | ||||||||
56858997-G-T | ** | ||||||||
13684374-G-A | 11528698-G-A | *** | |||||||
5829754-T-C | 5961713-T-C | Z1947 | *** | ||||||
14430916-CCA-C | 12310189-CCA-C | *** | |||||||
16533791-CAT-C | 14421911-CAT-C | *** | |||||||
13477181-A-C,T | 11321505-A-C,T | *** | |||||||
28784545-T-G | 26638398-T-G | *** | |||||||
28784551-T-G | 26638404-T-G | *** | |||||||
28784555-T-G | 26638408-T-G | *** | |||||||
18317422-C-T | 16205542-C-T | P6_Prx | *** | ||||||
24170843-C-T | 22024696-C-T | P3_b1 | *** | ||||||
25208046-G-C | 23061899-G-C | P2_r1 | *** | ||||||
25371639-G-A | 23225492-G-A | P2_r2 | *** | ||||||
26194413-C-T | 24048266-C-T | P1_Y1 | *** | ||||||
15542267-C-A | 13430387-C-A | *** | |||||||
13489774-C-A | 11334098-C-A | *** | |||||||
24013847-CTATA-C,CTA | 21867700-CTATA-C,CTA | 21×TA | *** | ||||||
14960354-A-C | 12848429-A-C | *** | |||||||
23741981-C-A | 21580095-C-A | *** | |||||||
10958264-C-A | *** | ||||||||
3407873-CA-C | 3539832-CA-C | 8×A | *** | ||||||
6630512-CT-C,CTT | 6762471-CT-C,CTT | 15×T | *** | ||||||
7080201-C-A | 7212160-C-A | *** | |||||||
7337428-C-A | 7469387-C-A | *** | |||||||
7363323-A-T | 7495282-A-T | *** | |||||||
9029813-G-T | 9192204-G-T | *** | |||||||
9223288-C-A | 9385679-C-A | *** | |||||||
10033602-TG-T | 10195993-TG-T | *** | |||||||
10820357-T-C | *** | ||||||||
10831474-T-C | *** | ||||||||
10997348-A-G | *** | ||||||||
11022065-CTATCT-C,CCAT | *** | ||||||||
13446515-C-A | 11290839-C-A | *** | |||||||
13483323-T-G | 11327647-T-G | *** | |||||||
13485570-C-A,G | 11329894-C-A,G | *** | |||||||
13485656-G-A | 11329980-G-A | *** | |||||||
13858610-G-T | 11737904-G-T | *** | |||||||
13973257-C-A | 11852551-C-A | *** | |||||||
14253254-C-CAAA | 12132548-C-CAAA | 14×A | *** | ||||||
14377570-A-T | 12256866-A-T | *** | |||||||
14461028-G-T | 12340301-G-T | *** | |||||||
14712010-CTGCTGATTGGTGCATTTTACAGAG-C | 12600077-CTGCTGATTGGTGCATTTTACAGAG-C | *** | |||||||
16623655-G-T | 14511775-G-T | *** | |||||||
16703659-G-T | 14591779-G-T | *** | |||||||
17551991-A-G | 15440111-A-G | *** | |||||||
18933522-C-A | 16821642-C-A | *** | |||||||
19391417-C-A | 17279537-C-A | *** | |||||||
21109953-G-A | 18948067-G-A | *** | |||||||
21153165-C-CT | 18991279-C-CT | 9×T | *** | ||||||
21472230-C-T | 19310344-C-T | FT13830 | *** | ||||||
22810012-C-A | 20648126-C-A | *** | |||||||
23061921-C-A | 20900035-C-A | *** | |||||||
24407336-C-T | 22261189-C-T | *** | |||||||
28583570-C-A | 26437423-C-A | *** | |||||||
28724444-G-A | 26578297-G-A | *** | |||||||
56847349-A-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.