Tree Position

R-M269 > L23 > L51 > Z2118 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B60229
7413823-T-C 7545782-T-C Y62024 YY+
18704474-AAAAGTGCTTTCTTAAAATAG-A 16592594-AAAAGTGCTTTCTTAAAATAG-A +
9426841-GACAA-G 9589232-GACAA-G +
10025818-G-T 10188209-G-T BY83133 Y+
21748967-A-G 19587081-A-G Y77055 YY+
21518775-C-T 19356889-C-T Y76666 YY+
21140427-A-G 18978541-A-G Y75866 YY+
21113845-C-T 18951959-C-T Y75828 YY+
13661006-G-T 11505330-G-T +
13661239-T-G 11505563-T-G +
13801761-T-C 11681055-T-C Y65496 +
14045483-G-A 11924777-G-A BY14092 YY+
18793025-A-G 16681145-A-G Y74055 YY+
14136996-T-C 12016290-T-C Y66013 YY+
18732447-C-T 16620567-C-T Y73942 YY+
14150927-T-TA 12030221-T-TA +
9119527-T-C 9281918-T-C Y64851 Y+
18240786-A-G 16128906-A-G Y73345 Y+
18118941-T-C 16007061-T-C Y73103 YY+
17750832-C-T 15638952-C-T Y72276 YY+
17165853-G-C 15053973-G-C Y71165 YY+
17111728-A-T 14999848-A-T Y71085 YY+
15037098-T-C 12925186-T-C Y67632 YY+
15138304-C-A 13026391-C-A Y67790 YY+
17090341-G-A 14978461-G-A BY112218 YY+
16797810-G-A 14685930-G-A Y70513 YY+
16698852-C-G 14586972-C-G Y70356 YY+
15778410-T-C 13666530-T-C Y68880 YY+
15658727-G-GT 13546847-G-GT 8×T+
15498220-T-C 13386340-T-C YY+
15469778-A-C 13357898-A-C Y68282 YY+
9405088-T-C 9567479-T-C Y65008 YY+
8606576-C-G 8738535-C-G Y64180 YY+
15228246-C-T 13116332-C-T Y67896 Y+
23556369-T-C 21394483-T-C Y80074 YY+
17383849-TGATGA-T 15271969-TGATGA-T 8×GATGA+
2847712-T-C 2979671-T-C Y60376 YY+
2888998-G-C 3020957-G-C Y60455 YY+
6659562-A-G 6791521-A-G Y60766 YY+
6884395-A-G 7016354-A-G Y61141 YY+
8588094-G-A 8720053-G-A Y64145 YY+
24109100-T-C 21962953-T-C P3_b1 +
7213108-G-T 7345067-G-T Y61710 YY+
23653093-G-A 21491207-G-A BY11991 Y+
24465801-T-A 22319654-T-A Y80767 Y+
23196002-A-G 21034116-A-G Y79438 Y+
22476292-A-C 20314406-A-C BY223550 DYZ19 +
7308420-G-C 7440379-G-C Y61873 YY+
8304836-A-G 8436795-A-G Y63483 YY+
8173192-C-T 8305151-C-T BY11296 BY11990 YY+
15437909-A-G 13326029-A-G Y68233 YY+
8041182-G-T 8173141-G-T Y63023 YY+
7518611-T-C 7650570-T-C Y62082 Y+
22479192-A-T 20317306-A-T BY46394 DYZ19 +
7365253-C-T 7497212-C-T Y61951 YY+
3436383-CG-C 3568342-CG-C **
9541151-A-G 9703542-A-G BY80214 IR3_Prx **
27032015-T-G 24885868-T-G P1_r4 **
13436813-G-A 11281137-G-A PF3262 **
13858367-ATGGAATCACATAGAACGGAT-A 11737661-ATGGAATCACATAGAACGGAT-A **
13858435-A-G 11737729-A-G **
9923891-G-T 10086282-G-T **
22258221-T-G 20096335-T-G DYZ19 **
22360130-GT-G 20198244-GT-G DYZ19 **
13857866-T-G 11737160-T-G **
13857710-A-G 11737004-A-G **
10022108-C-T 10184499-C-T PF6740 **
28710732-CA-C 26564585-CA-C **
13857865-C-T 11737159-C-T **
27226135-C-T 25079988-C-T P1_g3 **
18522486-G-A 16410606-G-A BY122007 P6_Dst **
13799146-C-G 11678440-C-G **
13857864-A-T 11737158-A-T **
22295936-A-G 20134050-A-G DYZ19 **
22281723-G-T 20119837-G-T DYZ19 ***
13860365-G-A 11739659-G-A ***
13850585-AGAAAT-A 11729879-AGAAAT-A ***
13858642-G-C,T 11737936-G-C,T ***
13450501-TTACACTCCAC-T,TTCCACTCCAC 11294825-TTACACTCCAC-T,TTCCACTCCAC ***
17299921-CATAGATAG-C 15188041-CATAGATAG-C 12×ATAG***
9954137-CA-C 10116528-CA-C 8×A***
13471170-G-A 11315494-G-A ***
13471151-G-T 11315475-G-T ***
13471145-T-C 11315469-T-C ***
25192574-G-T 23046427-G-T g1 ***
22283594-C-A 20121708-C-A DYZ19 ***
26029761-AT-A 23883614-AT-A P1_Y1 12×T***
13847221-A-C 11726515-A-C ***
9963161-A-C 10125552-A-C ***
9944121-A-G,T 10106512-A-G,T ***
13830155-G-T 11709449-G-T ***
13869503-C-A 11748797-C-A ***
28786642-C-A 26640495-C-A ***
22287637-G-A 20125751-G-A DYZ19 ***
58977258-A-T 56831111-A-T ***
9978035-C-A 10140426-C-A ***
13845308-TGAATGGAATG-T 11724602-TGAATGGAATG-T 5×GAATG***
10019581-TTTTTC-T 10181972-TTTTTC-T ***
9963163-C-T 10125554-C-T ***
13471188-G-A 11315512-G-A ***
10019251-T-C 10181642-T-C ***
13811776-A-T 11691070-A-T ***
13814056-G-T 11693350-G-T ***
9966275-TG-T 10128666-TG-T ***
13811797-A-G 11691091-A-G ***
13485856-G-A,T 11330180-G-A,T ***
13847499-T-A 11726793-T-A ***
13847503-G-T 11726797-G-T ***
26714383-A-C 24568236-A-C P1_g2 ***
9991828-T-C 10154219-T-C ***
13471196-T-G 11315520-T-G ***
26220492-A-G 24074345-A-G P1_Y1 ***
13679906-T-C 11524230-T-C ***
13848147-T-A 11727441-T-A ***
26107452-T-C 23961305-T-C P1_Y1 ***
22309613-T-C 20147727-T-C BY22453 DYZ19 ***
28819199-T-A 26673052-T-A ***
13846441-G-A,T 11725735-G-A,T ***
9961684-C-T 10124075-C-T ***
17426011-C-CCTTTTCTTTT 15314131-C-CCTTTTCTTTT 11×CTTTT***
13453919-ACTT-G 11298243-ACTT-G ***
26189132-G-A 24042985-G-A P1_Y1 ***
26136436-G-A 23990289-G-A P1_Y1 ***
9984594-T-G 10146985-T-G ***
13385679-G-A 11230003-G-A ***
22238380-T-C 20076494-T-C DYZ19 ***
58981170-C-A 56835023-C-A ***
58977489-G-C 56831342-G-C ***
23480482-A-G 21318596-A-G A10862 ***
22303000-T-G 20141114-T-G DYZ19 ***
24957328-A-G 22811181-A-G g1 ***
24832686-T-C 22686539-T-C P3_b2 ***
23678766-G-GC 21516880-G-GC ***
22509865-G-T 20347979-G-T BY38463 DYZ19 ***
9991785-A-G 10154176-A-G ***
22479027-A-AAGG 20317141-A-AAGG DYZ19 ***
22479023-CTTT-C 20317137-CTTT-C DYZ19 ***
22456304-T-A 20294418-T-A DYZ19 ***
22430327-T-G 20268441-T-G DYZ19 ***
8498109-T-TTGTGTG 8630068-T-TTGTGTG 12×TG***
22423419-A-G 20261533-A-G DYZ19 ***
22291691-C-G 20129805-C-G DYZ19 ***
25026566-C-T 22880419-C-T g1 ***
22282519-G-A 20120633-G-A DYZ19 ***
22248155-C-T 20086269-C-T DYZ19 ***
22240280-C-T 20078394-C-T DYZ19 ***
22237415-A-C 20075529-A-C DYZ19 ***
22220661-A-T 20058775-A-T DYZ19 ***
13454877-CATTCT-C 11299201-CATTCT-C ***
20714752-T-C 18552866-T-C P4_Prx ***
20699997-C-G 18538111-C-G P4_Prx ***
13714841-AGAATG-A 11559165-AGAATG-A 7×GAATG***
20693762-T-C 18531876-T-C P4_Prx ***
19901226-G-A 17789346-G-A P5_Prx ***
24989104-C-T 22842957-C-T g1 ***
25065089-G-A 22918942-G-A g1 ***
13450304-CATTCCATTGCATTTA-C,CATTCCATTGC 11294628-CATTCCATTGCATTTA-C,CATTCCATTGC ***
28798920-C-T 26652773-C-T ***
25882517-G-GTTGT 23736370-G-GTTGT P1_Y1 ***
13810047-T-A 11689341-T-A ***
13851389-C-T 11730683-C-T ***
58974882-TGTCCA-T 56828735-TGTCCA-T ***
25747063-T-A 23600916-T-A P1_b3 ***
13453397-TCCTTTC-T 11297721-TCCTTTC-T ***
13453419-C-A 11297743-C-A ***
13196293-GTGTTC-G 11040617-GTGTTC-G ***
13196323-C-T 11040647-C-T ***
13866033-CA-C 11745327-CA-C ***
22257414-A-G 20095528-A-G FT453879 DYZ19 ***
13857683-C-T 11736977-C-T ***
25256954-C-T 23110807-C-T P2_r1 ***
23672310-G-C 21510424-G-C ***
22295923-C-A 20134037-C-A DYZ19 ***
22317564-A-G 20155678-A-G DYZ19 ***
25734388-C-G 23588241-C-G P1_b3 ***
13845434-A-G 11724728-A-G ***
58981176-C-G 56835029-C-G ***
13845459-GAAA-G 11724753-GAAA-G 9×A***
28587426-A-AT,ATT 26441279-A-AT,ATT 8×T***
22304206-C-T 20142320-C-T DYZ19 ***
13845419-T-G 11724713-T-G ***
22478863-C-T 20316977-C-T Z4995 DYZ19 ***
13464515-C-A,G 11308839-C-A,G ***
9959012-C-T 10121403-C-T ***
26511104-AC-A 24364957-AC-A P1_Y1 ***
13860399-G-C 11739693-G-C ***
28799745-C-A 26653598-C-A ***
28791281-C-T 26645134-C-T 5×GGAGT***
28790816-C-A 26644669-C-A ***
22426610-T-C 20264724-T-C DYZ19 ***
22236227-G-A 20074341-G-A DYZ19 ***
13860418-A-T 11739712-A-T ***
13860405-G-A 11739699-G-A ***
13856570-A-G 11735864-A-G ***
9953564-C-T 10115955-C-T ***
13856508-T-G 11735802-T-G S14969 ***
13855145-A-T 11734439-A-T ***
13835299-T-C 11714593-T-C ***
13833406-T-A 11712700-T-A ***
13827914-T-A 11707208-T-A ***
13808389-C-T 11687683-C-T BY25765 ***
13801443-T-G 11680737-T-G ***
13513047-A-G 11357371-A-G ***
28819146-C-A 26672999-C-A ***
9953568-A-C 10115959-A-C ***
13195289-A-C 11039613-A-C ***
13847414-A-G 11726708-A-G ***
14480573-A-G 12359842-A-G ***
13866809-CGG-C 11746103-CGG-C ***
13866109-G-C,T 11745403-G-C,T ***
13858618-C-T 11737912-C-T FT22395 ***
13855120-A-T 11734414-A-T ***
13847496-T-C 11726790-T-C ***
13847490-C-A 11726784-C-A ***
13847478-A-G 11726772-A-G ***
13847409-G-T 11726703-G-T FT216138 ***
9953579-T-C 10115970-T-C ***
13847399-A-G 11726693-A-G ***
13846690-A-G 11725984-A-G ***
13837442-A-G 11716736-A-G ***
13817551-C-T 11696845-C-T ***
13669477-A-G 11513801-A-G ***
10059798-A-C 10222189-A-C PF4680 ***
9959276-G-T 10121667-G-T ***
9959261-T-C 10121652-T-C ***
13462629-T-C 11306953-T-C ***
13847209-A-G 11726503-A-G 4×AATGG***
58985555-AG-A 56839408-AG-A ***
13810938-T-G 11690232-T-G DC684 ***
13869029-C-G 11748323-C-G ***
13860320-G-T 11739614-G-T ***
13859804-A-G 11739098-A-G ***
13857542-G-A 11736836-G-A 9×ATGGA***
13839746-A-G 11719040-A-G ***
13839737-T-A 11719031-T-A ***
13822072-T-TC 11701366-T-TC ***
13818152-T-G 11697446-T-G ***
13686900-A-G 11531224-A-G ***
22244935-T-A 20083049-T-A DYZ19 ***
13652216-A-T 11496540-A-T ***
13652186-C-T 11496510-C-T ***
13455498-G-C 11299822-G-C 4×CATTC***
13455477-T-C 11299801-T-C ***
13455474-G-C 11299798-G-C ***
9981918-T-C 10144309-T-C ***
9966309-G-A 10128700-G-A ***
9959041-A-G 10121432-A-G ***
22244905-G-A 20083019-G-A FGC83184 DYZ19 ***
22275642-A-T 20113756-A-T BY22445 DYZ19 ***
10020554-A-G 10182945-A-G ***
13803093-G-A 11682387-G-A ***
58974910-T-C 56828763-T-C ***
19966688-AAAGAAG-A 17854808-AAAGAAG-A P5_Prx 26×AAG***
23900736-T-C 21738850-T-C ***
23900676-T-A 21738790-T-A ***
13839723-G-C 11719017-G-C ***
13839721-C-G 11719015-C-G ***
13828006-T-G 11707300-T-G ***
13803118-G-C 11682412-G-C ***
13402550-A-G 11246874-A-G ***
22275649-C-G 20113763-C-G BY22446 DYZ19 ***
10019640-T-C 10182031-T-C ***
22506389-G-C 20344503-G-C DYZ19 ***
22365253-G-C 20203367-G-C DYZ19 ***
22359935-G-T 20198049-G-T DYZ19 ***
22300747-C-A 20138861-C-A DYZ19 ***
13815619-A-T 11694913-A-T ***
28786631-G-A 26640484-G-A ***
22366131-G-T 20204245-G-T DYZ19 ***
58977623-C-T 56831476-C-T ***
9981913-A-T 10144304-A-T ***
22238381-G-C 20076495-G-C DYZ19 ***
13860195-G-A 11739489-G-A ***
13860457-G-A 11739751-G-A ***
13860446-C-A 11739740-C-A FT357569 ***
13866245-A-G 11745539-A-G ***
13827961-T-G 11707255-T-G ***
10016664-G-A 10179055-G-A ***
10013310-C-T 10175701-C-T ***
13860259-G-T 11739553-G-T ***
58977339-A-G 56831192-A-G ***
20489555-A-ATATTT 18327669-A-ATATTT P5_Dst 13×TATTT***
13858593-G-T 11737887-G-T ***
9992163-TACTC-T 10154554-TACTC-T ***
9953669-T-C 10116060-T-C ***
9953650-A-T 10116041-A-T ***
22343715-T-A 20181829-T-A DYZ19 ***
9981731-G-A 10144122-G-A FT387329 ***
9935219-T-C 10097610-T-C ***
14480673-T-C 12359942-T-C ***
13453278-CAGTTT-C 11297602-CAGTTT-C ***
22483467-A-T 20321581-A-T DYZ19 ***
58978384-C-G 56832237-C-G ***
13857644-T-A 11736938-T-A ***
13810059-G-T 11689353-G-T ***
22359975-G-A 20198089-G-A DYZ19 ***
13799151-T-A,G 11678445-T-A,G ***
28805124-G-T 26658977-G-T ***
9959024-T-C 10121415-T-C ***
13435138-C-G 11279462-C-G ***
22238393-A-G 20076507-A-G DYZ19 ***
13866680-G-A 11745974-G-A ***
13827892-A-T 11707186-A-T ***
9934910-CCTAT-C 10097301-CCTAT-C ***
13818092-C-T 11697386-C-T ***
13818088-G-C 11697382-G-C ***
9961585-T-A 10123976-T-A ***
9961584-C-T 10123975-C-T ***
9943020-A-G 10105411-A-G ***
13847485-A-G 11726779-A-G ***
13828077-T-G 11707371-T-G ***
13818078-G-A 11697372-G-A ***
13138413-C-T 10627899-C-T ***
13846689-C-G 11725983-C-G ***
28784438-A-G 26638291-A-G ***
13868675-C-T 11747969-C-T ***
14946324-CA-C 12834398-CA-C 11×A***
13858628-A-T 11737922-A-T ***
13851160-A-T 11730454-A-T ***
13827976-T-G 11707270-T-G ***
13809947-A-T 11689241-A-T ***
13138814-C-T 10628300-C-T ***
10031912-G-T 10194303-G-T ***
13859355-G-C 11738649-G-C ***
13446794-A-T 11291118-A-T ***
13137867-C-A 10627353-C-A ***
13446785-C-A 11291109-C-A ***
13141319-T-C 10630805-T-C ***
9987802-G-A 10150193-G-A ***
9966326-A-G 10128717-A-G ***
13860449-C-G 11739743-C-G FT387094 ***
13855136-A-G 11734430-A-G ***
13810117-T-C 11689411-T-C ***
13801467-G-T 11680761-G-T ***
10016298-G-C 10178689-G-C ***
13810064-G-T 11689358-G-T ***
13734135-C-T 11578459-C-T ***
58976873-G-A 56830726-G-A ***
13141195-T-C 10630681-T-C ***
9961488-C-A 10123879-C-A ***
13483111-A-G 11327435-A-G ***
58976722-C-A 56830575-C-A ***
13843363-G-T 11722657-G-T ***
13843360-A-G 11722654-A-G ***
10013148-G-T 10175539-G-T ***
58978876-C-G 56832729-C-G ***
13859375-G-A 11738669-G-A FT61330 ***
13857668-AC-A 11736962-AC-A ***
13846658-T-A 11725952-T-A ***
13845389-A-G 11724683-A-G ***
13833374-AT-A,AA 11712668-AT-A,AA ***
13822032-A-T 11701326-A-T ***
13818066-A-T 11697360-A-T ***
28819197-C-T 26673050-C-T ***
28819190-T-G 26673043-T-G ***
13857670-C-A 11736964-C-A ***
13822231-A-T 11701525-A-T BY25771 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B602291090585879381138028237
Used in age calculations1090585879381138028237
Counts of SNPs4139
Variant counts last updated 2022-07-30 03:29:52.



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