Carr
FGC: ESFPZ, FTDNA: 267578Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FGC ESFPZ |
---|---|---|---|---|---|---|---|---|
22246738-G-A | 20084852-G-A | FGC17840 | DYZ19 | + | ||||
5678622-C-T | 5810581-C-T | FGC17841 | + | |||||
5678815-T-C | 5810774-T-C | FGC17843 | + | |||||
5880727-C-T | 6012686-C-T | FGC17844 | + | |||||
6061911-G-T | 6193870-G-T | FGC17845 | + | |||||
7552848-T-C | 7684807-T-C | FGC17846 | Y | Y | + | |||
8848473-T-C | 8980432-T-C | FGC17847 | Y | Y | + | |||
13947363-G-A | 11826657-G-A | FGC17848 | Y | + | ||||
14418343-G-A | 12297618-G-A | FGC17850 | Y | Y | + | |||
15290790-C-T | 13178889-C-T | FGC17851 | Y | + | ||||
16011376-C-A | 13899496-C-A | FGC17854 | Y | + | ||||
19065244-G-A | 16953364-G-A | FGC17856 | Y | + | ||||
21523347-T-A | 19361461-T-A | FGC17858 | Y | + | ||||
4966795-C-T | 5098754-C-T | FGC17842 | * | |||||
13403410-G-A | 11247734-G-A | ** | ||||||
22281897-C-T | 20120011-C-T | DYZ19 | ** | |||||
22281898-T-C | 20120012-T-C | DYZ19 | ** | |||||
13437076-G-A | 11281400-G-A | ** | ||||||
13440983-G-A | 11285307-G-A | ** | ||||||
22367457-T-C | 20205571-T-C | FGC35522 | DYZ19 | ** | ||||
13430807-G-A | 11275131-G-A | ** | ||||||
13400899-C-T | 11245223-C-T | ** | ||||||
22361072-TA-T | 20199186-TA-T | DYZ19 | ** | |||||
9976343-A-T | 10138734-A-T | ** | ||||||
9976391-A-C | 10138782-A-C | ** | ||||||
13423604-G-T | 11267928-G-T | ** | ||||||
28577923-A-G | 26431776-A-G | ** | ||||||
28577990-G-A | 26431843-G-A | FT292738 | ** | |||||
13419611-T-G | 11263935-T-G | ** | ||||||
21551652-T-C | 19389766-T-C | BY64469 | PF3058 | ** | ||||
21551677-A-G | 19389791-A-G | BY19488 | FGC22824 MZ46 Z21398 | ** | ||||
28577941-CACACATTAT-C | 26431794-CACACATTAT-C | ** | ||||||
22281896-T-G | 20120010-T-G | DYZ19 | ** | |||||
13547797-C-T | 11392121-C-T | ** | ||||||
13562981-G-C | 11407305-G-C | ** | ||||||
15836022-C-A | 13724142-C-A | ** | ||||||
17269794-C-A | 15157914-C-A | ** | ||||||
21339635-A-T | 19177749-A-T | ** | ||||||
21419211-G-T | 19257325-G-T | ** | ||||||
21789033-T-A | 19627147-T-A | ** | ||||||
22505044-G-T | 20343158-G-T | DYZ19 | ** | |||||
23517658-C-A | 21355772-C-A | ** | ||||||
25529592-A-T | 23383445-A-T | P1_gr1 | ** | |||||
6000313-CATT-C | 6132272-CATT-C | ** | ||||||
22498241-A-T | 20336355-A-T | DYZ19 | *** | |||||
22360234-A-C | 20198348-A-C | DYZ19 | *** | |||||
22337997-T-G | 20176111-T-G | DYZ19 | *** | |||||
22252757-T-G | 20090871-T-G | DYZ19 | *** | |||||
13489766-AC-CG | 11334090-AC-CG | *** | ||||||
13479048-AGGCA-CGGCG | 11323372-AGGCA-CGGCG | *** | ||||||
13801082-TCG-ACT | 11680376-TCG-ACT | DYZ17 | *** | |||||
13833370-ACTAAT-GCGAAA | 11712664-ACTAAT-GCGAAA | DYZ17 | *** | |||||
24782318-AT-A | 22636171-AT-A | P3_b2 | 16×T | *** | ||||
58972154-GTTCC-TTGCA | 56826007-GTTCC-TTGCA | *** | ||||||
10033512-C-T | 10195903-C-T | *** | ||||||
13129366-C-T | 10618852-C-T | *** | ||||||
13129390-G-C | 10618876-G-C | *** | ||||||
13463231-AGCCA-GGCCG | 11307555-AGCCA-GGCCG | *** | ||||||
13469933-AC-CA | 11314257-AC-CA | *** | ||||||
22227942-G-A | 20066056-G-A | DYZ19 | *** | |||||
10095043-A-C | 10257434-A-C | *** | ||||||
22236572-T-A | 20074686-T-A | DYZ19 | *** | |||||
13470168-AG-CC | 11314492-AG-CC | *** | ||||||
10033581-ACA-CCT | 10195972-ACA-CCT | *** | ||||||
13110501-A-T | 10599987-A-T | *** | ||||||
22355353-T-C | 20193467-T-C | DYZ19 | *** | |||||
22309972-T-A | 20148086-T-A | DYZ19 | *** | |||||
22481103-C-G | 20319217-C-G | DYZ19 | *** | |||||
22481114-G-A | 20319228-G-A | DYZ19 | *** | |||||
13440910-CA-AG | 11285234-CA-AG | *** | ||||||
19025741-CAAG-GAAA | 16913861-CAAG-GAAA | *** | ||||||
22355074-C-A | 20193188-C-A | DYZ19 | *** | |||||
22355167-G-T | 20193281-G-T | DYZ19 | *** | |||||
22361261-G-C | 20199375-G-C | DYZ19 | *** | |||||
13133098-C-T | 10622584-C-T | *** | ||||||
22355119-T-C | 20193233-T-C | DYZ19 | *** | |||||
22355779-T-C | 20193893-T-C | DYZ19 | *** | |||||
22360396-TGC-T | 20198510-TGC-T | DYZ19 | *** | |||||
22360402-C-T | 20198516-C-T | DYZ19 | *** | |||||
22360406-G-A | 20198520-G-A | DYZ19 | *** | |||||
22355186-G-A | 20193300-G-A | DYZ19 | *** | |||||
13110504-G-C | 10599990-G-C | *** | ||||||
19178408-T-C | 17066528-T-C | *** | ||||||
58859147-A-C | 56731724-T-G | *** | ||||||
13129599-C-A | 10619085-C-A | *** | ||||||
13129637-C-T | 10619123-C-T | *** | ||||||
13129643-G-T | 10619129-G-T | *** | ||||||
13424387-A-T | 11268711-A-T | *** | ||||||
13129606-ACC-CCT | 10619092-ACC-CCT | *** | ||||||
22435751-T-C | 20273865-T-C | DYZ19 | *** | |||||
28253403-T-A | 26107256-T-A | P1_b4 | *** | |||||
13859991-TATTGAATGGG-CATCGA | 11739285-TATTGAATGGG-CATCGA | DYZ17 | *** | |||||
27001771-CT-C | 24855624-CT-C | P1_r4 | 24×T | *** | ||||
13441016-G-A | 11285340-G-A | *** | ||||||
22342868-G-A | 20180982-G-A | DYZ19 | *** | |||||
25246626-A-C | 23100479-A-C | P2_r1 | *** | |||||
5996645-C-T | 6128604-C-T | FT156308 | *** | |||||
10033784-T-C | 10196175-T-C | *** | ||||||
10033801-G-T | 10196192-G-T | *** | ||||||
10075805-G-A | 10238196-G-A | *** | ||||||
13242462-C-G | 11086786-C-G | *** | ||||||
13257197-G-A | 11101521-G-A | *** | ||||||
13380476-A-G | 11224800-A-G | *** | ||||||
13440270-C-A | 11284594-C-A | *** | ||||||
9930174-A-G | 10092565-A-G | *** | ||||||
22337788-ACCTC-TCCTT | 20175902-ACCTC-TCCTT | DYZ19 | *** | |||||
22356771-A-G | 20194885-A-G | BY217653 | DYZ19 | *** | ||||
6015191-A-G | 6147150-A-G | *** | ||||||
22311916-T-G | 20150030-T-G | BY23256 | DYZ19 | *** | ||||
22355477-G-T | 20193591-G-T | DYZ19 | *** | |||||
13733634-C-A | 11577958-C-A | DYZ17 | *** | |||||
22500425-A-T | 20338539-A-T | DYZ19 | *** | |||||
22355017-G-A | 20193131-G-A | DYZ19 | *** | |||||
22282239-T-G | 20120353-T-G | DYZ19 | *** | |||||
22360257-T-A | 20198371-T-A | DYZ19 | *** | |||||
10033526-A-G | 10195917-A-G | S13018 | *** | |||||
13425829-T-C | 11270153-T-C | *** | ||||||
19138349-C-A | 17026469-C-A | FTB42491 | 11×TA | *** | ||||
25422189-C-T | 23276042-C-T | A3557 | P2_r2 | *** | ||||
10075782-C-T | 10238173-C-T | *** | ||||||
26902265-T-G | 24756118-T-G | P1_r3 | *** | |||||
13446527-CTCCATTCCATTCCATTCCATTCCAT-C | 11290851-CTCCATTCCATTCCATTCCATTCCAT-C | 16×TCCAT | *** | |||||
13707329-TG-AC | 11551653-TG-AC | DYZ17 | *** | |||||
13804794-CTCGTAT-ATCAAAG | 11684088-CTCGTAT-ATCAAAG | DYZ17 | *** | |||||
22360402-CAGCG-TAGCA | 20198516-CAGCG-TAGCA | DYZ19 | *** | |||||
20426330-T-G | 18264444-T-G | P5_Dst | *** | |||||
22324657-T-C | 20162771-T-C | DYZ19 | *** | |||||
19386989-TTATATATAATATAATATTATATATATTA-T | 17275109-TTATATATAATATAATATTATATATATTA-T | *** | ||||||
28577983-ACC-GCA | 26431836-ACC-GCA | *** | ||||||
13472386-TAG-CAA | 11316710-TAG-CAA | *** | ||||||
26991207-C-A | 24845060-C-A | P1_r4 | *** | |||||
58839961-T-C | 56750910-A-G | *** | ||||||
22308010-G-T | 20146124-G-T | DYZ19 | *** | |||||
13748579-N-A | 11592903-N-A | DYZ17 | *** | |||||
22310921-G-A | 20149035-G-A | DYZ19 | *** | |||||
22321010-C-G | 20159124-C-G | DYZ19 | *** | |||||
58868943-A-T | 56721928-T-A | *** | ||||||
26229057-A-T | 24082910-A-T | P1_Y1 | *** | |||||
24388089-T-TAC | 22241942-T-TAC | *** | ||||||
10073648-A-T | 10236039-A-T | *** | ||||||
10073718-T-A | 10236109-T-A | *** | ||||||
22356008-T-C | 20194122-T-C | DYZ19 | *** | |||||
22320998-T-C | 20159112-T-C | DYZ19 | *** | |||||
22321002-C-A | 20159116-C-A | DYZ19 | *** | |||||
25207997-G-A | 23061850-G-A | P2_r1 | *** | |||||
58858865-CCCATTCCATTCCATT-C | 56731955-CAATGGAATGGAATGG-C | 10×CCATT | *** | |||||
22308079-A-G | 20146193-A-G | DYZ19 | *** | |||||
13726823-G-A | 11571147-G-A | DYZ17 | *** | |||||
13110569-G-C | 10600055-G-C | *** | ||||||
13110566-G-C | 10600052-G-C | *** | ||||||
13724011-GGG-TGC | 11568335-GGG-TGC | DYZ17 | *** | |||||
13133105-G-C | 10622591-G-C | *** | ||||||
22434879-C-A | 20272993-C-A | DYZ19 | *** | |||||
22434896-A-C | 20273010-A-C | DYZ19 | *** | |||||
13462300-TG-CA | 11306624-TG-CA | *** | ||||||
13462324-GCCCA-ACCCT | 11306648-GCCCA-ACCCT | *** | ||||||
22360134-TT-G | 20198248-TT-G | DYZ19 | *** | |||||
22434855-CA-AC | 20272969-CA-AC | DYZ19 | *** | |||||
22434884-CGGTC-AGGTA | 20272998-CGGTC-AGGTA | DYZ19 | *** | |||||
58899798-G-C | 56691073-C-G | *** | ||||||
22504451-G-T | 20342565-G-T | DYZ19 | *** | |||||
28577983-A-G | 26431836-A-G | *** | ||||||
28577985-C-A | 26431838-C-A | *** | ||||||
13730899-G-A | 11575223-G-A | DYZ17 | *** | |||||
22310992-T-G | 20149106-T-G | DYZ19 | *** | |||||
22310999-TTCAT-ATCAA | 20149113-TTCAT-ATCAA | DYZ19 | *** | |||||
13478076-TGCA-CGCG | 11322400-TGCA-CGCG | *** | ||||||
58867544-CCAAG-TCAAT | 56723323-CTTGG-ATTGA | *** | ||||||
22481126-A-C | 20319240-A-C | DYZ19 | *** | |||||
22481135-A-T | 20319249-A-T | DYZ19 | *** | |||||
25246623-A-C | 23100476-A-C | P2_r1 | *** | |||||
27546170-A-G | 25400023-A-G | P1_Y2 | *** | |||||
13726590-T-AATGGA | 11570914-T-AATGGA | DYZ17 | *** | |||||
20426314-T-A | 18264428-T-A | P5_Dst | *** | |||||
58900034-A-C | 56690837-T-G | *** | ||||||
20426351-C-A | 18264465-C-A | P5_Dst | 19×A | *** | ||||
13458960-G-C | 11303284-G-C | *** | ||||||
19611320-C-T | 17499440-C-T | P5_Prx | *** | |||||
22361261-GTT-CTA | 20199375-GTT-CTA | DYZ19 | *** | |||||
5393297-A-G | 5525256-A-G | FT159154 | *** | |||||
22355751-T-G | 20193865-T-G | DYZ19 | *** | |||||
22361263-T-A | 20199377-T-A | DYZ19 | *** | |||||
13867328-AACTCGAAT-GATTGAAC | 11746622-AACTCGAAT-GATTGAAC | DYZ17 | *** | |||||
58903883-T-A | 56686988-A-T | *** | ||||||
22308155-A-G | 20146269-A-G | DYZ19 | *** | |||||
13454817-C-CATTCA | 11299141-C-CATTCA | *** | ||||||
22308210-G-T | 20146324-G-T | BY25062 | DYZ19 | *** | ||||
26991217-T-A | 24845070-T-A | P1_r4 | *** | |||||
13516360-TG-CA | 11360684-TG-CA | *** | ||||||
9191073-T-A | 9353464-T-A | *** | ||||||
26310747-A-T | 24164600-A-T | P1_Y1 | *** | |||||
13517480-G-A | 11361804-G-A | *** | ||||||
28117193-A-T | 25971046-A-T | P1_b4 | *** | |||||
10101258-G-A | 10263649-G-A | *** | ||||||
9313879-T-C | 9476270-T-C | *** | ||||||
22330199-T-G | 20168313-T-G | DYZ19 | *** | |||||
21575637-C-T | 19413751-C-T | *** | ||||||
22355005-A-C | 20193119-A-C | DYZ19 | *** | |||||
2899764-T-C | 3031723-T-C | *** | ||||||
2900581-C-T | 3032540-C-T | *** | ||||||
3207369-G-A | 3339328-G-A | *** | ||||||
3312026-A-G | 3443985-A-G | *** | ||||||
3511979-G-T | 3643938-G-T | *** | ||||||
4868556-T-C | 5000515-T-C | *** | ||||||
5106629-T-A | 5238588-T-A | *** | ||||||
5107388-T-G | 5239347-T-G | *** | ||||||
5235693-C-T | 5367652-C-T | *** | ||||||
5261644-G-A | 5393603-G-A | *** | ||||||
5261663-C-A | 5393622-C-A | *** | ||||||
5344471-T-A | 5476430-T-A | 37×A | *** | |||||
6009235-G-T | 6141194-G-T | *** | ||||||
6151816-G-T | 6283775-G-T | IR3_Dst | *** | |||||
6177730-T-C | 6309689-T-C | IR3_Dst | *** | |||||
6206758-A-G | 6338717-A-G | IR3_Dst | *** | |||||
6246673-G-T | 6378632-G-T | IR3_Dst | *** | |||||
6326365-C-A | 6458324-C-A | IR3_Dst | *** | |||||
6569827-A-G | 6701786-A-G | *** | ||||||
6750375-A-G | 6882334-A-G | *** | ||||||
7002914-A-G | 7134873-A-G | *** | ||||||
7002927-T-A | 7134886-T-A | *** | ||||||
7002936-G-A | 7134895-G-A | FTA3055 | *** | |||||
7002943-T-C | 7134902-T-C | *** | ||||||
7002946-T-C | 7134905-T-C | *** | ||||||
7275987-A-G | 7407946-A-G | *** | ||||||
7276369-A-C | 7408328-A-C | *** | ||||||
7438868-G-T | 7570827-G-T | *** | ||||||
7441085-T-G | 7573044-T-G | *** | ||||||
7483084-C-T | 7615043-C-T | IR1_L | *** | |||||
7573864-T-A | 7705823-T-A | *** | ||||||
7573869-G-T | 7705828-G-T | *** | ||||||
7576503-G-A | 7708462-G-A | *** | ||||||
8065447-T-C | 8197406-T-C | *** | ||||||
8276535-G-T | 8408494-G-T | *** | ||||||
8277736-G-T | 8409695-G-T | *** | ||||||
8324072-T-C | 8456031-T-C | *** | ||||||
8811692-C-T | 8943651-C-T | *** | ||||||
9181734-T-C | 9344125-T-C | *** | ||||||
9432010-C-T | 9594401-C-T | *** | ||||||
9683551-T-A | 9845942-T-A | IR3_Prx | *** | |||||
9725018-G-T | 9887409-G-T | IR3_Prx | *** | |||||
9976327-G-A | 10138718-G-A | FTB21053 | *** | |||||
10001162-T-C | 10163553-T-C | *** | ||||||
10030597-A-C | 10192988-A-C | *** | ||||||
10033778-T-C | 10196169-T-C | BY209656 | *** | |||||
10073562-T-G | 10235953-T-G | *** | ||||||
10073777-C-A | 10236168-C-A | *** | ||||||
10075765-A-C | 10238156-A-C | *** | ||||||
13110498-G-C | 10599984-G-C | *** | ||||||
13110583-G-C | 10600069-G-C | *** | ||||||
13110598-A-G | 10600084-A-G | *** | ||||||
13110607-C-T | 10600093-C-T | *** | ||||||
13110617-G-C | 10600103-G-C | *** | ||||||
13110619-A-G | 10600105-A-G | *** | ||||||
13110630-G-A | 10600116-G-A | *** | ||||||
13110632-G-T | 10600118-G-T | *** | ||||||
13110652-A-G | 10600138-A-G | *** | ||||||
13110653-A-C | 10600139-A-C | *** | ||||||
13110666-T-G | 10600152-T-G | *** | ||||||
13129493-C-T | 10618979-C-T | *** | ||||||
13130812-A-G | 10620298-A-G | *** | ||||||
13133076-C-A | 10622562-C-A | *** | ||||||
13255635-C-T | 11099959-C-T | *** | ||||||
13255636-C-T | 11099960-C-T | *** | ||||||
13379655-T-C | 11223979-T-C | *** | ||||||
13379667-T-C | 11223991-T-C | *** | ||||||
13379690-T-G | 11224014-T-G | *** | ||||||
13379691-T-A | 11224015-T-A | *** | ||||||
13379693-C-T | 11224017-C-T | *** | ||||||
13382429-T-C | 11226753-T-C | *** | ||||||
13382999-A-C | 11227323-A-C | *** | ||||||
13383059-T-A | 11227383-T-A | *** | ||||||
13383087-C-A | 11227411-C-A | *** | ||||||
13383491-T-G | 11227815-T-G | *** | ||||||
13424240-A-G | 11268564-A-G | *** | ||||||
13424247-T-C | 11268571-T-C | *** | ||||||
13424254-A-G | 11268578-A-G | *** | ||||||
13424275-G-A | 11268599-G-A | *** | ||||||
13424359-A-G | 11268683-A-G | *** | ||||||
13441008-T-A | 11285332-T-A | *** | ||||||
13477771-T-G | 11322095-T-G | *** | ||||||
13478183-A-T | 11322507-A-T | *** | ||||||
13488447-C-A | 11332771-C-A | *** | ||||||
13488462-G-T | 11332786-G-T | *** | ||||||
13488505-G-A | 11332829-G-A | *** | ||||||
13488512-G-T | 11332836-G-T | *** | ||||||
13580445-A-T | 11424769-A-T | *** | ||||||
13726758-G-T | 11571082-G-T | DYZ17 | *** | |||||
13733608-A-G | 11577932-A-G | DYZ17 | *** | |||||
13746478-G-A | 11590802-G-A | DYZ17 | *** | |||||
13972252-A-G | 11851546-A-G | *** | ||||||
13972260-C-T | 11851554-C-T | *** | ||||||
14113561-C-T | 11992855-C-T | *** | ||||||
14113564-C-G | 11992858-C-G | *** | ||||||
14153183-G-T | 12032477-G-T | *** | ||||||
14161613-A-G | 12040907-A-G | *** | ||||||
14418162-A-G | *** | |||||||
14683560-A-G | 12571626-A-G | *** | ||||||
15147481-G-A | 13035568-G-A | *** | ||||||
15149075-C-G | 13037162-C-G | *** | ||||||
15150331-C-T | 13038418-C-T | *** | ||||||
15296611-G-A | 13184710-G-A | *** | ||||||
15296635-C-T | 13184734-C-T | *** | ||||||
15296636-A-G | 13184735-A-G | *** | ||||||
15296638-C-G | 13184737-C-G | *** | ||||||
15815315-C-T | 13703435-C-T | *** | ||||||
15836591-G-T | 13724711-G-T | *** | ||||||
15962355-C-T | 13850475-C-T | *** | ||||||
15963525-T-C | 13851645-T-C | *** | ||||||
16064138-A-G | 13952258-A-G | *** | ||||||
16618252-C-A | 14506372-C-A | *** | ||||||
17069066-A-T | 14957186-A-T | *** | ||||||
17074719-T-G | 14962839-T-G | *** | ||||||
17635036-C-T | 15523156-C-T | *** | ||||||
17991193-G-T | 15879313-G-T | P7_Prx | *** | |||||
18007049-T-A | 15895169-T-A | P7_Gap | *** | |||||
18139071-A-G | 16027191-A-G | *** | ||||||
18293097-C-A | 16181217-C-A | P6_Prx | *** | |||||
18298047-A-T | 16186167-A-T | P6_Prx | *** | |||||
19026153-C-A | 16914273-C-A | *** | ||||||
19189556-T-C | 17077676-T-C | *** | ||||||
19387144-G-A | 17275264-G-A | *** | ||||||
19553511-A-C | 17441631-A-C | *** | ||||||
19553522-A-T | 17441642-A-T | *** | ||||||
19553545-T-C | 17441665-T-C | *** | ||||||
19611301-C-T | 17499421-C-T | P5_Prx | *** | |||||
19720173-C-T | 17608293-C-T | P5_Prx | *** | |||||
19792070-A-C | 17680190-A-C | P5_Prx | *** | |||||
19847439-G-T | 17735559-G-T | P5_Prx | *** | |||||
19937281-A-T | 17825401-A-T | P5_Prx | *** | |||||
20084793-A-T | 17972913-A-T | P5_Dst | *** | |||||
20377688-A-G | 18215802-A-G | P5_Dst | *** | |||||
20426309-A-C | 18264423-A-C | P5_Dst | *** | |||||
20426326-T-G | 18264440-T-G | P5_Dst | *** | |||||
20426333-C-A | 18264447-C-A | P5_Dst | *** | |||||
20426340-A-G | 18264454-A-G | P5_Dst | *** | |||||
20568437-G-A | 18406551-G-A | P5_Dst | *** | |||||
20568462-C-A | 18406576-C-A | P5_Dst | *** | |||||
20613209-T-C | 18451323-T-C | P4_Prx | *** | |||||
20645916-A-T | 18484030-A-T | P4_Prx | *** | |||||
20645926-C-T | 18484040-C-T | P4_Prx | *** | |||||
20734353-G-T | 18572467-G-T | P4_Prx | *** | |||||
20843061-G-T | 18681175-G-T | P4_Dst | *** | |||||
21171288-G-T | 19009402-G-T | *** | ||||||
21171631-C-A | 19009745-C-A | *** | ||||||
21350275-T-C | 19188389-T-C | *** | ||||||
21409093-C-A | 19247207-C-A | *** | ||||||
21601783-C-A | 19439897-C-A | *** | ||||||
21670397-T-C | 19508511-T-C | *** | ||||||
21829375-G-T | 19667489-G-T | *** | ||||||
21853606-T-G | 19691720-T-G | *** | ||||||
21913303-G-A | 19751417-G-A | *** | ||||||
22227933-C-A | 20066047-C-A | DYZ19 | *** | |||||
22236432-T-C | 20074546-T-C | DYZ19 | *** | |||||
22236434-G-A | 20074548-G-A | DYZ19 | *** | |||||
22236447-T-A | 20074561-T-A | DYZ19 | *** | |||||
22236450-G-C | 20074564-G-C | DYZ19 | *** | |||||
22266578-T-C | 20104692-T-C | DYZ19 | *** | |||||
22292855-T-C | 20130969-T-C | DYZ19 | *** | |||||
22292863-C-T | 20130977-C-T | DYZ19 | *** | |||||
22308038-C-T | 20146152-C-T | DYZ19 | *** | |||||
22308046-C-T | 20146160-C-T | DYZ19 | *** | |||||
22308049-G-T | 20146163-G-T | DYZ19 | *** | |||||
22308056-G-T | 20146170-G-T | DYZ19 | *** | |||||
22308082-G-C | 20146196-G-C | DYZ19 | *** | |||||
22308117-G-C | 20146231-G-C | DYZ19 | *** | |||||
22308137-T-A | 20146251-T-A | DYZ19 | *** | |||||
22308156-G-C | 20146270-G-C | DYZ19 | *** | |||||
22308180-G-T | 20146294-G-T | DYZ19 | *** | |||||
22308191-C-A | 20146305-C-A | DYZ19 | *** | |||||
22308423-G-A | 20146537-G-A | DYZ19 | *** | |||||
22309950-T-G | 20148064-T-G | DYZ19 | *** | |||||
22327550-T-A | 20165664-T-A | DYZ19 | *** | |||||
22329855-T-C | 20167969-T-C | DYZ19 | *** | |||||
22337683-A-G | 20175797-A-G | DYZ19 | *** | |||||
22343048-A-G | 20181162-A-G | DYZ19 | *** | |||||
22347184-A-T | 20185298-A-T | DYZ19 | *** | |||||
22353907-T-A | 20192021-T-A | DYZ19 | *** | |||||
22355791-T-G | 20193905-T-G | DYZ19 | *** | |||||
22355987-G-C | 20194101-G-C | DYZ19 | *** | |||||
22360086-C-A | 20198200-C-A | DYZ19 | *** | |||||
22360101-T-A | 20198215-T-A | DYZ19 | *** | |||||
22360357-G-T | 20198471-G-T | DYZ19 | *** | |||||
22360365-A-T | 20198479-A-T | DYZ19 | *** | |||||
22361101-T-G | 20199215-T-G | DYZ19 | *** | |||||
22363984-G-A | 20202098-G-A | DYZ19 | *** | |||||
22363993-G-T | 20202107-G-T | DYZ19 | *** | |||||
22364300-T-A | 20202414-T-A | DYZ19 | *** | |||||
22366044-C-T | 20204158-C-T | DYZ19 | *** | |||||
22367262-G-C | 20205376-G-C | DYZ19 | *** | |||||
22367271-C-G | 20205385-C-G | DYZ19 | *** | |||||
22434349-C-T | 20272463-C-T | DYZ19 | *** | |||||
22457231-C-A | 20295345-C-A | DYZ19 | *** | |||||
22457256-G-T | 20295370-G-T | DYZ19 | *** | |||||
22480879-G-T | 20318993-G-T | DYZ19 | *** | |||||
22481127-T-C | 20319241-T-C | DYZ19 | *** | |||||
22481833-G-C | 20319947-G-C | DYZ19 | *** | |||||
22499406-G-A | 20337520-G-A | DYZ19 | *** | |||||
22499449-C-A | 20337563-C-A | DYZ19 | *** | |||||
22500099-C-A | 20338213-C-A | DYZ19 | *** | |||||
22500112-A-T | 20338226-A-T | DYZ19 | *** | |||||
22504558-G-T | 20342672-G-T | DYZ19 | *** | |||||
22504559-T-C | 20342673-T-C | DYZ19 | *** | |||||
22504566-A-T | 20342680-A-T | DYZ19 | *** | |||||
22505132-G-T | 20343246-G-T | DYZ19 | *** | |||||
22696124-G-A | 20534238-G-A | *** | ||||||
22696130-G-A | 20534244-G-A | *** | ||||||
22696146-T-C | 20534260-T-C | *** | ||||||
22852214-T-A | 20690328-T-A | *** | ||||||
23029586-A-C | 20867700-A-C | *** | ||||||
23212792-G-T | 21050906-G-T | *** | ||||||
24069196-A-G | 21923049-A-G | P3_b1 | *** | |||||
24278334-A-G | 22132187-A-G | P3_b1 | *** | |||||
24490970-T-G | 22344823-T-G | *** | ||||||
24572869-G-A | 22426722-G-A | P3_t2 | *** | |||||
24663939-T-C | 22517792-T-C | P3_b2 | *** | |||||
24745879-G-T | 22599732-G-T | P3_b2 | *** | |||||
24754975-G-C | 22608828-G-C | P3_b2 | *** | |||||
24856836-G-T | 22710689-G-T | IR1_R | *** | |||||
24922643-C-T | 22776496-C-T | g1 | *** | |||||
24940514-T-A | 22794367-T-A | g1 | *** | |||||
24960302-T-A | 22814155-T-A | g1 | *** | |||||
25065048-G-T | 22918901-G-T | g1 | *** | |||||
25145518-C-T | 22999371-C-T | g1 | *** | |||||
25208243-A-C | 23062096-A-C | P2_r1 | *** | |||||
25215359-A-G | 23069212-A-G | P2_r1 | *** | |||||
25246610-A-C | 23100463-A-C | P2_r1 | *** | |||||
25246839-G-T | 23100692-G-T | P2_r1 | *** | |||||
25698613-C-T | 23552466-C-T | P1_b3 | *** | |||||
25698845-A-G | 23552698-A-G | P1_b3 | *** | |||||
25698848-T-G | 23552701-T-G | P1_b3 | *** | |||||
25900414-G-A | 23754267-G-A | P1_Y1 | *** | |||||
25939581-A-C | 23793434-A-C | P1_Y1 | *** | |||||
25971104-G-T | 23824957-G-T | P1_Y1 | *** | |||||
26043532-A-T | 23897385-A-T | P1_Y1 | *** | |||||
26059843-T-A | 23913696-T-A | P1_Y1 | *** | |||||
26059886-C-A | 23913739-C-A | P1_Y1 | *** | |||||
26060078-T-A | 23913931-T-A | P1_Y1 | *** | |||||
26060132-T-G | 23913985-T-G | P1_Y1 | *** | |||||
26060158-C-A | 23914011-C-A | P1_Y1 | *** | |||||
26206109-A-G | 24059962-A-G | P1_Y1 | *** | |||||
26335266-A-T | 24189119-A-T | P1_Y1 | *** | |||||
26344082-A-T | 24197935-A-T | P1_Y1 | *** | |||||
26352358-T-G | 24206211-T-G | P1_Y1 | *** | |||||
26498118-G-T | 24351971-G-T | P1_Y1 | *** | |||||
26501692-C-T | 24355545-C-T | P1_Y1 | *** | |||||
26566393-C-A | 24420246-C-A | P1_g2 | *** | |||||
26612596-A-G | 24466449-A-G | P1_g2 | *** | |||||
26685092-G-C | 24538945-G-C | P1_g2 | *** | |||||
26698644-T-C | 24552497-T-C | P1_g2 | *** | |||||
26971540-A-G | 24825393-A-G | P1_r4 | *** | |||||
26982448-G-A | 24836301-G-A | P1_r4 | *** | |||||
26991057-T-A | 24844910-T-A | P1_r4 | *** | |||||
26991209-C-A | 24845062-C-A | P1_r4 | *** | |||||
26991220-G-A | 24845073-G-A | P1_r4 | *** | |||||
27227233-A-C | 25081086-A-C | P1_g3 | *** | |||||
27272238-T-C | 25126091-T-C | P1_g3 | *** | |||||
27314708-A-G | 25168561-A-G | P1_g3 | *** | |||||
27322265-T-C | 25176118-T-C | P1_g3 | *** | |||||
27337797-T-A | 25191650-T-A | P1_g3 | *** | |||||
27378639-A-T | 25232492-A-T | P1_g3 | *** | |||||
27427861-T-C | 25281714-T-C | P1_g3 | *** | |||||
27483964-A-G | 25337817-A-G | P1_Y2 | *** | |||||
27548992-C-T | 25402845-C-T | P1_Y2 | *** | |||||
27603108-G-T | 25456961-G-T | P1_Y2 | *** | |||||
27720698-T-A | 25574551-T-A | P1_Y2 | *** | |||||
27733345-T-A | 25587198-T-A | P1_Y2 | *** | |||||
27848626-G-A | 25702479-G-A | P1_Y2 | *** | |||||
27902351-C-T | 25756204-C-T | P1_Y2 | *** | |||||
28084632-A-T | 25938485-A-T | P1_Y2 | *** | |||||
28091025-G-A | 25944878-G-A | P1_Y2 | *** | |||||
28228397-G-A | 26082250-G-A | P1_b4 | *** | |||||
28316312-G-T | 26170165-G-T | P1_b4 | *** | |||||
28488236-C-T | 26342089-C-T | *** | ||||||
58829898-C-A | 56760973-G-T | *** | ||||||
58837963-G-T | 56752908-C-A | *** | ||||||
58839326-C-T | 56751545-G-A | *** | ||||||
58844750-C-T | 56746121-G-A | *** | ||||||
58851526-T-G | 56739345-A-C | *** | ||||||
58859339-G-T | 56731532-C-A | *** | ||||||
58860490-C-G | 56730381-G-C | *** | ||||||
58868837-G-C | 56722034-C-G | *** | ||||||
58868904-T-C | 56721967-A-G | *** | ||||||
58869300-C-G | 56721571-G-C | *** | ||||||
58877022-T-G | 56713849-A-C | *** | ||||||
58885856-C-G | 56705015-G-C | *** | ||||||
58889137-A-G | 56701734-T-C | *** | ||||||
58901530-T-C | 56689341-A-G | *** | ||||||
59000875-G-T | 56854728-G-T | *** | ||||||
22281896-TCTCAAAT-GTCCAGAG | 20120010-TCTCAAAT-GTCCAGAG | DYZ19 | *** | |||||
3909109-CAAAAA-C | 4041068-CAAAAA-C | 22×A | *** | |||||
4763687-A-AT | 4895646-A-AT | 24×T | *** | |||||
5574077-CTTTTTTT-C | 5706036-CTTTTTTT-C | 19×T | *** | |||||
6226093-T-TTCTTTCTC | 6358052-T-TTCTTTCTC | IR3_Dst | *** | |||||
8232951-CTAGCAGTT-C | 8364910-CTAGCAGTT-C | *** | ||||||
8481329-TA-T | 8613288-TA-T | *** | ||||||
9713326-GCACACA-G | 9875717-GCACACA-G | IR3_Prx | 20×CA | *** | ||||
10033791-GTGGC-ATGGA | 10196182-GTGGC-ATGGA | *** | ||||||
10036931-GCTCACC-CCTTGCT | 10199322-GCTCACC-CCTTGCT | *** | ||||||
10073555-CT-TG | 10235946-CT-TG | *** | ||||||
10091739-AATA-CATG | 10254130-AATA-CATG | *** | ||||||
13110566-GCTG-CCTC | 10600052-GCTG-CCTC | *** | ||||||
13110617-GTA-CTG | 10600103-GTA-CTG | *** | ||||||
13110630-GGG-AGT | 10600116-GGG-AGT | *** | ||||||
13129379-AAGT-GAGA | 10618865-AAGT-GAGA | *** | ||||||
13242458-C-CAG | 11086782-C-CAG | *** | ||||||
13253199-GTTTT-G | 11097523-GTTTT-G | 14×T | *** | |||||
13379690-TTTC-GATT | 11224014-TTTC-GATT | *** | ||||||
13383403-GAGTA-AAGTG | 11227727-GAGTA-AAGTG | *** | ||||||
13440194-TTAG-CTAC | 11284518-TTAG-CTAC | *** | ||||||
13446514-G-GCACTC | 11290838-G-GCACTC | *** | ||||||
13462251-TCGT-ACGC | 11306575-TCGT-ACGC | *** | ||||||
13462597-TCCCA-GCTCT | 11306921-TCCCA-GCTCT | *** | ||||||
13463531-CCAGGGA-ACGGGGT | 11307855-CCAGGGA-ACGGGGT | *** | ||||||
13470159-GG-CC | 11314483-GG-CC | *** | ||||||
13470854-TT-GG | 11315178-TT-GG | *** | ||||||
13478170-TGCCG-GGCCA | 11322494-TGCCG-GGCCA | *** | ||||||
13488510-AGG-TAT | 11332834-AGG-TAT | *** | ||||||
13518488-GAG-TCC | 11362812-GAG-TCC | *** | ||||||
13723970-ATGGAT-A | 11568294-ATGGAT-A | DYZ17 | *** | |||||
13733626-TA-AG | 11577950-TA-AG | DYZ17 | *** | |||||
13746428-GGG-TGC | 11590752-GGG-TGC | DYZ17 | *** | |||||
13924970-CAAAAAAAAAA-C | 11804264-CAAAAAAAAAA-C | 20×A | *** | |||||
14113561-CTCC-TTCG | 11992855-CTCC-TTCG | *** | ||||||
15150543-TAG-T | 13038630-TAG-T | *** | ||||||
15263358-A-AAATTTG | 13151448-A-AAATTTG | *** | ||||||
16786213-CTTTTTTTT-C | 14674333-CTTTTTTTT-C | 22×T | *** | |||||
17675541-GAAAAAAAA-G | 15563661-GAAAAAAAA-G | 20×A | *** | |||||
21092191-CTTTTT-C | 18930305-CTTTTT-C | 18×T | *** | |||||
21346975-T-TTATATATATA | 19185089-T-TTATATATATA | 29×TA | *** | |||||
22236219-CAA-AAT | 20074333-CAA-AAT | DYZ19 | *** | |||||
22252757-TGTT-GGTG | 20090871-TGTT-GGTG | DYZ19 | *** | |||||
22292844-AT-TG | 20130958-AT-TG | DYZ19 | *** | |||||
22297118-TTCCATCT-GTCCTTCA | 20135232-TTCCATCT-GTCCTTCA | DYZ19 | *** | |||||
22308079-ACTG-GCTC | 20146193-ACTG-GCTC | DYZ19 | *** | |||||
22308467-GTGATGA-TTGGTGT | 20146581-GTGATGA-TTGGTGT | DYZ19 | *** | |||||
22308489-AAGTTG-CACTTT | 20146603-AAGTTG-CACTTT | DYZ19 | *** | |||||
22311315-CG-TA | 20149429-CG-TA | DYZ19 | *** | |||||
22337744-TTGACA-CTGGCG | 20175858-TTGACA-CTGGCG | DYZ19 | *** | |||||
22337954-TAGA-CAGC | 20176068-TAGA-CAGC | DYZ19 | *** | |||||
22337968-TT-AC | 20176082-TT-AC | DYZ19 | *** | |||||
22355724-CACT-TACC | 20193838-CACT-TACC | DYZ19 | *** | |||||
22360357-GT-TC | 20198471-GT-TC | DYZ19 | *** | |||||
22363993-GA-TG | 20202107-GA-TG | DYZ19 | *** | |||||
22365824-GAAC-CAAT | 20203938-GAAC-CAAT | DYZ19 | *** | |||||
22481126-AT-CC | 20319240-AT-CC | DYZ19 | *** | |||||
22504558-GT-TC | 20342672-GT-TC | DYZ19 | *** | |||||
22504566-ACTTC-TCTTA | 20342680-ACTTC-TCTTA | DYZ19 | *** | |||||
24387452-TATCC-T | 22241305-TATCC-T | *** | ||||||
28253380-TACT-AACA | 26107233-TACT-AACA | P1_b4 | *** | |||||
28442556-C-CA | 26296409-C-CA | P1_gr2 | 16×A | *** | ||||
28819254-CGA-TGC | 26673107-CGA-TGC | *** | ||||||
58819393-CTTTCGC-TTATCCA | 56771472-GCGAAAG-TGGATAA | *** | ||||||
58839028-TC-T | 56751840-AG-A | *** | ||||||
59004623-GGAAAGAAAGAAAGAAA-G | 56858476-GGAAAGAAAGAAAGAAA-G | 16×GAAA | *** | |||||
59005360-T-TAA | 56859213-T-TAA | 8×A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.