Kauffman

FGC: FG1009A, FTDNA: N45983

Tree Position

R-U106/S21 > Z2265 > BY30097 > Z381/S263 > Z301/S499 > L48 > Z9 > Z347 > Z328 > FGC10367 > Z319 > S1734 > FGC564 > Z5054 > FGC539 > FGC546 > FGC550 > FGC560

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRFGC
FG1009A
hg19:Y:58857351-A-G hg38:Y:56733520-T-C **
hg19:Y:21824255-C-CAAA hg38:Y:19662369-C-CAAA 30×A**
hg19:Y:9998203-G-A hg38:Y:10160594-G-A **
hg19:Y:13286686-G-A hg38:Y:11131010-G-A A17988 **
hg19:Y:17266782-T-C hg38:Y:15154902-T-C A880 **
hg19:Y:22530583-C-A hg38:Y:20368697-C-A A881 **
hg19:Y:28752794-A-G hg38:Y:26606647-A-G A882 **
hg19:Y:3501955-C-CAAAAAAA hg38:Y:3633914-C-CAAAAAAA 22×A**
hg19:Y:9501621-CA-C hg38:Y:9664012-CA-C **
hg19:Y:10029281-TTGTGTCCTGGGG-T hg38:Y:10191672-TTGTGTCCTGGGG-T **
hg19:Y:16818971-G-GTATATA hg38:Y:14707091-G-GTATATA 21×TA***
hg19:Y:22459767-T-C hg38:Y:20297881-T-C DYZ19 ***
hg19:Y:22421431-C-A hg38:Y:20259545-C-A DYZ19 ***
hg19:Y:9943866-G-A hg38:Y:10106257-G-A ***
hg19:Y:22252716-G-C hg38:Y:20090830-G-C DYZ19 ***
hg19:Y:22360686-G-T hg38:Y:20198800-G-T DYZ19 ***
hg19:Y:22366658-G-T hg38:Y:20204772-G-T DYZ19 ***
hg19:Y:22341154-C-T hg38:Y:20179268-C-T DYZ19 ***
hg19:Y:58841085-A-C hg38:Y:56749786-T-G ***
hg19:Y:58866458-C-A hg38:Y:56724413-G-T ***
hg19:Y:25592898-CTC-ATA hg38:Y:23446751-CTC-ATA P1_gr1 ***
hg19:Y:25444404-C-T hg38:Y:23298257-C-T P2_r2 ***
hg19:Y:22352968-T-A hg38:Y:20191082-T-A DYZ19 ***
hg19:Y:22360249-G-A hg38:Y:20198363-G-A DYZ19 ***
hg19:Y:13193950-N-T hg38:Y:11038274-T-. ***
hg19:Y:9939619-T-C hg38:Y:10102010-T-C ***
hg19:Y:22252860-ATCC-GTCA hg38:Y:20090974-ATCC-GTCA DYZ19 ***
hg19:Y:22236357-T-A hg38:Y:20074471-T-A DYZ19 ***
hg19:Y:22481323-A-T hg38:Y:20319437-A-T DYZ19 ***
hg19:Y:58866446-CCCA-TCCG hg38:Y:56724422-TGGG-CGGA ***
hg19:Y:9956269-CATC-AATT hg38:Y:10118660-CATC-AATT ***
hg19:Y:59000347-GCA-ACT hg38:Y:56854200-GCA-ACT ***
hg19:Y:13733946-G-A hg38:Y:11578270-G-A DYZ17 ***
hg19:Y:17998574-GAGCG-CAGCC hg38:Y:15886694-GAGCG-CAGCC P7_Gap ***
hg19:Y:58863781-CGATTCCATTCTAGTA-C hg38:Y:56727074-GTACTAGAATGGAATC-G ***
hg19:Y:22739716-C-CAAAAA hg38:Y:20577830-C-CAAAAA 24×A***
hg19:Y:13262767-CCT-GCC hg38:Y:11107091-CCT-GCC ***
hg19:Y:13203979-CTC-TAT hg38:Y:11048303-CTC-TAT ***
hg19:Y:20252796-C-CAAAAAA hg38:Y:18090910-C-CAAAAAA P5_Dst 24×A***
hg19:Y:58882252-C-T hg38:Y:56708619-G-A ***
hg19:Y:22421427-G-C hg38:Y:20259541-G-C DYZ19 ***
hg19:Y:13140964-CATTTCATT-C hg38:Y:10630450-CATTTCATT-C ***
hg19:Y:6565993-G-A hg38:Y:6697952-G-A ***
hg19:Y:26501077-G-A hg38:Y:24354930-G-A P1_Y1 ***
hg19:Y:23747205-C-CTTTTTTTT hg38:Y:21585319-C-CTTTTTTTT 29×T***
hg19:Y:28549471-CAAGA-AAAGT hg38:Y:26403324-CAAGA-AAAGT ***
hg19:Y:13288035-G-A hg38:Y:11132359-G-A ***
hg19:Y:13389929-A-G hg38:Y:11234253-A-G ***
hg19:Y:22361163-GT-TC hg38:Y:20199277-GT-TC DYZ19 ***
hg19:Y:9938913-T-C hg38:Y:10101304-T-C ***
hg19:Y:10001058-CT-C hg38:Y:10163449-CT-C 16×T***
hg19:Y:25288792-C-A hg38:Y:23142645-C-A P2_r1 ***
hg19:Y:9943885-ATTA-TTTG hg38:Y:10106276-ATTA-TTTG ***
hg19:Y:13143961-N-A hg38:Y:10633447-N-A ***
hg19:Y:22481716-ATTG-TTTC hg38:Y:20319830-ATTG-TTTC DYZ19 ***
hg19:Y:22460027-C-G hg38:Y:20298141-C-G ZS2743 DYZ19 ***
hg19:Y:6566041-C-CTTT hg38:Y:6698000-C-CTTT ***
hg19:Y:13286773-A-T hg38:Y:11131097-A-T ***
hg19:Y:13286832-T-C hg38:Y:11131156-T-C ***
hg19:Y:13286840-T-G hg38:Y:11131164-T-G ***
hg19:Y:13410495-T-A hg38:Y:11254819-T-A ***
hg19:Y:13427225-T-G hg38:Y:11271549-T-G ***
hg19:Y:13641545-A-C hg38:Y:11485869-A-C 8×C***
hg19:Y:22459985-C-T hg38:Y:20298099-C-T FGC23177BY43893 DYZ19 ***
hg19:Y:22342946-T-G hg38:Y:20181060-T-G DYZ19 ***
hg19:Y:22342970-TTA-GTT hg38:Y:20181084-TTA-GTT DYZ19 ***
hg19:Y:13616426-G-C hg38:Y:11460750-G-C ***
hg19:Y:22231879-GC-CT hg38:Y:20069993-GC-CT DYZ19 ***
hg19:Y:22232004-TC-CT hg38:Y:20070118-TC-CT DYZ19 ***
hg19:Y:22232028-TATC-CATG hg38:Y:20070142-TATC-CATG DYZ19 ***
hg19:Y:22232041-AAACTCTGGAC-GAACACAGGAT hg38:Y:20070155-AAACTCTGGAC-GAACACAGGAT DYZ19 ***
hg19:Y:22232060-TTT-ATC hg38:Y:20070174-TTT-ATC DYZ19 ***
hg19:Y:20489359-T-G hg38:Y:18327473-T-G P5_Dst ***
hg19:Y:13292384-T-C hg38:Y:11136708-T-C ***
hg19:Y:13406958-C-T hg38:Y:11251282-C-T ***
hg19:Y:13430398-A-C hg38:Y:11274722-A-C ***
hg19:Y:13431352-C-A hg38:Y:11275676-C-A ***
hg19:Y:13440029-T-C hg38:Y:11284353-T-C ***
hg19:Y:22459825-C-T hg38:Y:20297939-C-T BY220402 DYZ19 ***
hg19:Y:22460037-C-G hg38:Y:20298151-C-G FT457601 DYZ19 ***
hg19:Y:58829386-C-A hg38:Y:56761485-G-T ***
hg19:Y:58841057-A-G hg38:Y:56749814-T-C ***
hg19:Y:22263737-GTT-TTA hg38:Y:20101851-GTT-TTA DYZ19 ***
hg19:Y:58854627-C-CCATTG hg38:Y:56736239-G-GAATGC ***
hg19:Y:22421510-C-T hg38:Y:20259624-C-T DYZ19 ***
hg19:Y:9956269-C-A hg38:Y:10118660-C-A ***
hg19:Y:9956272-C-T hg38:Y:10118663-C-T ***
hg19:Y:22356775-CC-AT hg38:Y:20194889-CC-AT DYZ19 ***
hg19:Y:22252848-T-A hg38:Y:20090962-T-A DYZ19 ***
hg19:Y:58882400-GGC-TGT hg38:Y:56708469-GCC-ACA ***
hg19:Y:6388517-C-G hg38:Y:6520476-C-G ***
hg19:Y:22311666-GTG-ATA hg38:Y:20149780-GTG-ATA DYZ19 ***
hg19:Y:58844025-CAT-TAG hg38:Y:56746844-ATG-CTA ***
hg19:Y:6495498-GG-CT hg38:Y:6627457-GG-CT ***
hg19:Y:9956263-G-A hg38:Y:10118654-G-A ***
hg19:Y:22459949-A-C hg38:Y:20298063-A-C Z41334 DYZ19 ***
hg19:Y:9956299-G-T hg38:Y:10118690-G-T ***
hg19:Y:13535733-A-G hg38:Y:11380057-A-G ***
hg19:Y:3143266-T-A hg38:Y:3275225-T-A ***
hg19:Y:7924143-T-C hg38:Y:8056102-T-C ***
hg19:Y:7924149-C-A hg38:Y:8056108-C-A ***
hg19:Y:10029207-A-T hg38:Y:10191598-A-T ***
hg19:Y:10029218-G-A hg38:Y:10191609-G-A ***
hg19:Y:13483241-G-A hg38:Y:11327565-G-A ***
hg19:Y:13486645-C-T hg38:Y:11330969-C-T ***
hg19:Y:15121084-G-T hg38:Y:13009171-G-T ***
hg19:Y:17261517-T-A hg38:Y:15149637-T-A ***
hg19:Y:17834657-A-T hg38:Y:15722777-A-T ***
hg19:Y:18511596-A-T hg38:Y:16399716-A-T P6_Dst ***
hg19:Y:18511600-A-G hg38:Y:16399720-A-G P6_Dst ***
hg19:Y:20125043-C-A hg38:Y:18013163-C-A P5_Dst ***
hg19:Y:20125049-T-C hg38:Y:18013169-T-C P5_Dst ***
hg19:Y:20504902-C-G hg38:Y:18343016-C-G P5_Dst ***
hg19:Y:20541576-T-C hg38:Y:18379690-T-C P5_Dst ***
hg19:Y:21421089-A-G hg38:Y:19259203-A-G ***
hg19:Y:22234923-A-C hg38:Y:20073037-A-C DYZ19 ***
hg19:Y:22342912-C-T hg38:Y:20181026-C-T DYZ19 ***
hg19:Y:22361163-G-T hg38:Y:20199277-G-T DYZ19 ***
hg19:Y:22365850-A-T hg38:Y:20203964-A-T DYZ19 ***
hg19:Y:22366026-G-T hg38:Y:20204140-G-T DYZ19 ***
hg19:Y:22421518-C-T hg38:Y:20259632-C-T DYZ19 ***
hg19:Y:22459849-T-C hg38:Y:20297963-T-C FT457580 DYZ19 ***
hg19:Y:22459859-C-T hg38:Y:20297973-C-T BY220411 DYZ19 ***
hg19:Y:22459866-G-A hg38:Y:20297980-G-A DYZ19 ***
hg19:Y:22459962-G-A hg38:Y:20298076-G-A DYZ19 ***
hg19:Y:22459972-T-C hg38:Y:20298086-T-C DYZ19 ***
hg19:Y:22460001-T-A hg38:Y:20298115-T-A DYZ19 ***
hg19:Y:22460008-T-C hg38:Y:20298122-T-C DYZ19 ***
hg19:Y:22460014-T-G hg38:Y:20298128-T-G DYZ19 ***
hg19:Y:22460047-C-A hg38:Y:20298161-C-A DYZ19 ***
hg19:Y:22460062-T-A hg38:Y:20298176-T-A DYZ19 ***
hg19:Y:22460089-A-G hg38:Y:20298203-A-G BY220464 DYZ19 ***
hg19:Y:24207608-T-G hg38:Y:22061461-T-G P3_b1 ***
hg19:Y:25444406-A-T hg38:Y:23298259-A-T P2_r2 ***
hg19:Y:25995494-A-G hg38:Y:23849347-A-G P1_Y1 ***
hg19:Y:26500829-A-C hg38:Y:24354682-A-C P1_Y1 ***
hg19:Y:27650627-G-A hg38:Y:25504480-G-A P1_Y2 ***
hg19:Y:28013391-A-G hg38:Y:25867244-A-G P1_Y2 ***
hg19:Y:28013400-T-G hg38:Y:25867253-T-G P1_Y2 ***
hg19:Y:28058238-A-G hg38:Y:25912091-A-G P1_Y2 ***
hg19:Y:28058244-T-C hg38:Y:25912097-T-C P1_Y2 ***
hg19:Y:28548886-A-G hg38:Y:26402739-A-G ***
hg19:Y:58844015-T-C hg38:Y:56746856-A-G ***
hg19:Y:58844021-C-T hg38:Y:56746850-G-A ***
hg19:Y:58848864-G-C hg38:Y:56742007-C-G ***
hg19:Y:58848884-G-C hg38:Y:56741987-C-G ***
hg19:Y:58857451-C-T hg38:Y:56733420-G-A ***
hg19:Y:58857471-A-C hg38:Y:56733400-T-G ***
hg19:Y:58863330-C-A hg38:Y:56727541-G-T ***
hg19:Y:58868836-T-C hg38:Y:56722035-A-G ***
hg19:Y:58868867-C-G hg38:Y:56722004-G-C ***
hg19:Y:58872875-C-G hg38:Y:56717996-G-C ***
hg19:Y:58908554-G-A hg38:Y:56682317-C-T ***
hg19:Y:13292088-CCC-A hg38:Y:11136412-CCC-A ***
hg19:Y:9956306-CGAGATC-AGGGATA hg38:Y:10118697-CGAGATC-AGGGATA ***
hg19:Y:6205056-A-AAT hg38:Y:6337015-A-AAT IR3_Dst ***
hg19:Y:3181857-C-CAA hg38:Y:3313816-C-CAA 20×A***
hg19:Y:5426381-TC-CT hg38:Y:5558340-TC-CT ***
hg19:Y:6784476-GAAAAAAA-G hg38:Y:6916435-GAAAAAAA-G 23×A***
hg19:Y:7299925-CAA-C hg38:Y:7431884-CAA-C ***
hg19:Y:9847289-ATTTTTTT-A hg38:Y:10009680-ATTTTTTT-A 28×T***
hg19:Y:9938875-CCCCC-TCCCT hg38:Y:10101266-CCCCC-TCCCT ***
hg19:Y:13858510-AAATGGAATGGAATGGAATGGAATGG-A hg38:Y:11737804-AAATGGAATGGAATGGAATGGAATGG-A DYZ17 15×AATGG***
hg19:Y:13921125-C-CAAAAAAAAAA hg38:Y:11800419-C-CAAAAAAAAAA 10×A***
hg19:Y:14418170-A-ATGTGTGTGTGTGTG ***
hg19:Y:14875592-G-GTTT hg38:Y:12763662-G-GTTT 28×T***
hg19:Y:16666079-ATTTTTTT-A hg38:Y:14554199-ATTTTTTT-A 25×T***
hg19:Y:20504894-A-AT hg38:Y:18343008-A-AT P5_Dst ***
hg19:Y:22235090-CAA-AAG hg38:Y:20073204-CAA-AAG DYZ19 ***
hg19:Y:22353019-GTCT-TTCA hg38:Y:20191133-GTCT-TTCA DYZ19 ***
hg19:Y:22360301-ACATG-TCAT hg38:Y:20198415-ACATG-TCAT DYZ19 ***
hg19:Y:22366610-TACT-CACA hg38:Y:20204724-TACT-CACA DYZ19 ***
hg19:Y:22459756-ATGT-TTGC hg38:Y:20297870-ATGT-TTGC DYZ19 ***
hg19:Y:22459905-AA-GT hg38:Y:20298019-AA-GT DYZ19 ***
hg19:Y:22460109-TTTAA-GTTAC hg38:Y:20298223-TTTAA-GTTAC DYZ19 ***
hg19:Y:22460187-GTC-TTA hg38:Y:20298301-GTC-TTA DYZ19 ***
hg19:Y:22920605-C-CTTTT hg38:Y:20758719-C-CTTTT 25×T***
hg19:Y:23801733-C-CACAAAA hg38:Y:21639847-C-CACAAAA 31×A***
hg19:Y:24836734-GGGAA-AGGAG hg38:Y:22690587-GGGAA-AGGAG P3_b2 15×GGAA***
hg19:Y:25995029-CTC-ATA hg38:Y:23848882-CTC-ATA P1_Y1 ***
hg19:Y:27650608-CCAGT-ACAGC hg38:Y:25504461-CCAGT-ACAGC P1_Y2 ***
hg19:Y:27862563-A-AGAGC hg38:Y:25716416-A-AGAGC P1_Y2 ***
hg19:Y:27862569-A-AGAGG hg38:Y:25716422-A-AGAGG P1_Y2 ***
hg19:Y:28035859-CATGATG-TGTGACA hg38:Y:25889712-CATGATG-TGTGACA P1_Y2 ***
hg19:Y:58836623-GTTTCATTAG-ATTCCACTCC hg38:Y:56754239-CTAATGAAAC-GGAGTGGAAT ***
hg19:Y:58841093-CTCTATCT-TTCCATTC hg38:Y:56749771-AGATAGAG-GAATGGAA ***
hg19:Y:58861887-CTTCCATTCCATTCGA-C hg38:Y:56728956-CAATGGAATGGAATCG-C ***
hg19:Y:58868806-AGATTCCATTCCGTAC-A hg38:Y:56722038-AGGAATGGAATCGTAC-A ***
hg19:Y:59000935-TG-GA hg38:Y:56854788-TG-GA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: FG1009A*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs00
Variant counts last updated 2021-06-26 15:47:16.

* BED data not available. Using default values.

Big Tree Main Page