Leary

FTDNA: 497474, BigY2: 497474

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A353 > Z3026 > Z16250 > A114 > CTS4466/S1136 > S1115 > Z3023 > FGC84010

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
497474		BigY2
497474
18048758-T-G 15936878-T-G BY211741 YY++
17212028-A-G 15100148-A-G BY113092 YY++
7942940-G-A 8074899-G-A BY68943 YY++
8466880-G-C 8598839-G-C BY73054 YY++
13720250-C-A 11564574-C-A +
15085542-T-C 12973632-T-C BY99641 YY++
16631319-G-T 14519439-G-T BY109083 YY++
14143824-C-A 12023118-C-A Z42332 Y24129 YY++
22444960-C-G 20283074-C-G BY219520 DYZ19 +
18640848-A-G 16528968-A-G BY122781 YY++
21184323-TGA-T 19022437-TGA-T ++
22215459-C-G 20053573-C-G BY138530 Y++
17391713-T-A 15279833-T-A FTA45988 YY****
22869522-C-CAT 20707636-C-CAT ****
22269322-G-T 20107436-G-T DYZ19 *
7370417-TC-T 7502376-TC-T **
7541109-A-G 7673068-A-G **
7536541-C-A 7668500-C-A **
7424621-G-T 7556580-G-T **
7409399-C-A 7541358-C-A **
7397601-C-A 7529560-C-A **
7392212-GT-G 7524171-GT-G **
7392210-GT-G 7524169-GT-G **
7320210-T-C 7452169-T-C **
7343030-C-A 7474989-C-A **
6983832-C-A 7115791-C-A **
6730250-T-A 6862209-T-A **
6756121-G-A 6888080-G-A **
6778980-G-A 6910939-G-A ALK31 **
6779000-C-A 6910959-C-A **
6780716-A-T 6912675-A-T **
6828850-G-T 6960809-G-T **
6882096-T-C 7014055-T-C **
6886767-T-A 7018726-T-A **
6984719-G-A 7116678-G-A FT178834 **
7829311-T-A 7961270-T-A **
7013581-T-G 7145540-T-G **
7050319-A-G 7182278-A-G **
7128340-C-A 7260299-C-A **
7201482-C-A 7333441-C-A **
7204782-G-A 7336741-G-A **
7209968-T-G 7341927-T-G **
7241911-T-G 7373870-T-G **
7269698-A-G 7401657-A-G **
7299690-T-C 7431649-T-C **
7645215-T-C 7777174-T-C **
4840678-T-A 4972637-T-A **
7861098-A-C 7993057-A-C **
21832334-A-C 19670448-A-C **
10756664-C-A **
10753224-C-A **
10752722-C-T **
10752713-T-A **
10752236-T-C **
10747946-C-G **
10673664-C-A **
10671927-G-T **
21522491-C-A 19360605-C-A **
21555433-C-A 19393547-C-A **
10662561-C-A **
10655432-T-C **
21824916-A-G 19663030-A-G **
10651537-C-A **
9996190-C-A 10158581-C-A **
8238303-G-T 8370262-G-T **
8735103-G-A 8867062-G-A **
8295526-C-T 8427485-C-T **
8343018-C-A 8474977-C-A **
8344580-C-A 8476539-C-A **
8379242-C-A 8511201-C-A **
21862149-T-G 19700263-T-G **
8481937-C-G 8613896-C-G **
8792995-C-A 8924954-C-A **
9965256-T-C 10127647-T-C **
9108353-T-G **
9063824-G-T 9226215-G-T **
9371347-T-G 9533738-T-G **
9654491-A-C 9816882-A-C IR3_Prx **
9938493-A-T 10100884-A-T **
9956503-T-C 10118894-T-C **
6709429-G-T 6841388-G-T **
6460110-T-C 6592069-T-C FT152957 **
6694767-A-C 6826726-A-C **
4449341-A-T 4581300-A-T **
4937053-A-C 5069012-A-C **
13859352-A-G 11738646-A-G **
4840153-C-A 4972112-C-A **
4809830-G-T 4941789-G-T **
4804707-C-A 4936666-C-A **
4799050-T-C 4931009-T-C **
4793934-G-T 4925893-G-T **
4771612-T-A 4903571-T-A **
4586612-T-A 4718571-T-A **
4584745-C-A 4716704-C-A **
4547301-A-T 4679260-A-T **
4506780-G-T 4638739-G-T **
4498900-T-C 4630859-T-C **
4447937-C-A 4579896-C-A **
5118770-T-C 5250729-T-C **
4320506-T-C 4452465-T-C **
4302915-C-A 4434874-C-A **
4296784-C-A 4428743-C-A **
4237365-C-A 4369324-C-A **
4234533-C-A 4366492-C-A **
4230088-C-T 4362047-C-T **
4215965-G-A 4347924-G-A **
4212737-T-A 4344696-T-A **
21953626-C-A 19791740-C-A **
4172510-A-C 4304469-A-C **
4130605-G-T 4262564-G-T **
4123766-A-T 4255725-A-T **
4063209-A-T 4195168-A-T **
4062291-C-A 4194250-C-A **
5061098-G-C 5193057-G-C **
5131033-T-G 5262992-T-G **
6646070-C-A 6778029-C-A **
5709121-A-T 5841080-A-T **
6612152-G-T 6744111-G-T **
6510129-C-A 6642088-C-A **
6491942-A-C 6623901-A-C **
6491393-A-T 6623352-A-T **
10783442-A-C **
6205147-T-C 6337106-T-C IR3_Dst **
5965613-C-A 6097572-C-A **
5901547-C-A 6033506-C-A **
5889209-T-A 6021168-T-A **
5871288-C-A 6003247-C-A **
5853806-A-G 5985765-A-G **
5834373-C-A 5966332-C-A **
5830358-C-T 5962317-C-T **
5789343-T-A 5921302-T-A **
5684558-G-T 5816517-G-T FGC58737 **
5189311-T-G 5321270-T-G **
5550085-C-A 5682044-C-A **
5501229-C-A 5633188-C-A **
5449461-G-T 5581420-G-T **
5447162-G-T 5579121-G-T **
5427685-C-A 5559644-C-A **
5420629-T-G 5552588-T-G **
5383959-C-A 5515918-C-A **
5383941-C-A 5515900-C-A **
5358664-A-T 5490623-A-T **
5354409-C-G 5486368-C-G **
5242324-C-A 5374283-C-A **
5241832-G-T 5373791-G-T **
5211757-C-A 5343716-C-A **
5189383-C-T 5321342-C-T **
10782636-T-G **
10831142-C-G **
10788445-C-A **
15987804-T-C 13875924-T-C **
16620442-T-C 14508562-T-C **
16620259-C-A 14508379-C-A **
16575073-G-A 14463193-G-A **
16426318-C-A 14314438-C-A **
16384700-T-C 14272820-T-C **
16342646-G-T 14230766-G-T **
16320619-C-T 14208739-C-T **
16320616-A-G 14208736-A-G **
16320576-C-G 14208696-C-G **
16177014-C-A 14065134-C-A **
16108702-C-CTTTCGTTTCT 13996822-C-CTTTCGTTTCT P8_Prx 10×TTTCT**
16096013-A-G 13984133-A-G **
16081244-G-T 13969364-G-T **
16001511-G-T 13889631-G-T **
15932467-C-T 13820587-C-T **
16941504-C-A 14829624-C-A **
15922455-T-C 13810575-T-C **
21060646-C-T 18898760-C-T **
15790520-G-A 13678640-G-A **
15746135-A-G 13634255-A-G **
15735739-CCTTTG-C 13623859-CCTTTG-C **
15643039-C-A 13531159-C-A **
15570692-C-A 13458812-C-A **
15496389-A-G 13384509-A-G **
15342690-A-T 13230809-A-T **
15342544-C-A 13230663-C-A **
15290108-A-G 13178207-A-G **
15281519-A-G 13169618-A-G **
15280413-C-A 13168512-C-A **
15280230-TTACC-T 13168329-TTACC-T **
16814084-C-A 14702204-C-A **
17046653-A-T 14934773-A-T **
15068909-C-A 12957000-C-A **
18390148-G-A 16278268-G-A P6_Gap **
20350283-C-A 18188397-C-A P5_Dst **
19785344-A-AT 17673464-A-AT P5_Prx **
19568470-C-A 17456590-C-A P5_Prx **
19558302-T-A 17446422-T-A **
19532416-C-A 17420536-C-A **
19324178-G-C 17212298-G-C **
19302221-T-A 17190341-T-A **
19097310-C-A 16985430-C-A **
19075149-A-G 16963269-A-G **
19040824-G-T 16928944-G-T **
18876726-C-A 16764846-C-A **
18766673-G-T 16654793-G-T **
18630960-A-G 16519080-A-G **
18540016-T-A 16428136-T-A **
18390134-A-G 16278254-A-G P6_Gap **
17135796-A-G 15023916-A-G **
18190712-C-A 16078832-C-A **
18187679-G-T 16075799-G-T **
18185369-C-T 16073489-C-T **
18165982-A-T 16054102-A-T **
18094119-C-T 15982239-C-T **
17883853-A-G 15771973-A-G **
17859429-G-T 15747549-G-T **
17770432-A-C 15658552-A-C **
17717193-C-G 15605313-C-G **
17548186-C-T 15436306-C-T **
17511680-C-A 15399800-C-A **
17466572-A-G 15354692-A-G **
17445491-C-A 15333611-C-A **
17159037-C-A 15047157-C-A **
15180053-G-T 13068139-G-T **
14990229-T-A 12878314-T-A **
10790216-C-A **
10937374-C-T **
13196942-C-A 11041266-C-A **
11024299-T-A **
10997591-G-A **
10992936-C-A **
10984185-C-A **
10983288-C-G **
21383182-C-A 19221296-C-A **
10972971-T-A FT438715 **
10964210-T-C **
10964209-T-A **
10960678-C-A **
10950781-C-A **
10942694-T-TTAAAC **
10938831-G-T **
10926463-C-A **
13216646-T-A 11060970-T-A **
10886044-C-A **
10878598-C-A **
10867850-C-A **
10864656-T-G **
10861273-G-A **
10861263-C-CTCAAA **
10842426-T-G **
10831173-G-A **
3951994-G-T 4083953-G-T **
10830316-T-C **
10828301-C-A **
21409258-A-T 19247372-A-T **
10815928-T-A **
21495512-C-A 19333626-C-A **
13202498-C-A 11046822-C-A **
13324942-A-T 11169266-A-T **
21154662-G-T 18992776-G-T **
14017379-C-A 11896673-C-A **
14845477-A-G 12733543-A-G **
14815441-A-G 12703512-A-G **
14721727-C-A 12609795-C-A **
14614699-G-C 12502897-G-C **
14589910-C-T 12478110-C-T **
14560534-C-A 12448735-C-A **
14559207-C-A 12447408-C-A **
14558528-C-A 12446729-C-A **
14558526-A-T 12446727-A-T **
14448174-A-G 12327447-A-G **
14279979-C-A 12159273-C-A **
14233411-C-A 12112705-C-A **
14074450-C-A 11953744-C-A **
14017387-A-G 11896681-A-G **
14009579-GA-G 11888873-GA-G **
21269257-G-T 19107371-G-T Y33017 **
21243842-C-A 19081956-C-A **
13485798-T-A 11330122-T-A **
13544934-C-A 11389258-C-A **
13624149-G-A 11468473-G-A **
21248600-C-T 19086714-C-T **
11648592-T-C **
11652848-T-A **
11673643-A-C **
13974803-C-A 11854097-C-A **
13859244-A-T 11738538-A-T **
13875665-G-T 11754959-G-T **
13906260-C-T 11785554-C-T **
13929213-C-A 11808507-C-A **
13931404-G-T 11810698-G-T **
13973897-C-A 11853191-C-A **
4042022-A-T 4173981-A-T **
3686667-A-G 3818626-A-G **
3946393-T-C 4078352-T-C **
10821928-A-T **
15447090-C-A 13335210-C-A **
17871845-C-A 15759965-C-A **
2981201-G-T 3113160-G-T **
10753181-C-A **
10821906-C-G **
10753229-C-A **
10753190-T-C FT429703 **
2839997-C-A 2971956-C-A **
7045754-C-A 7177713-C-A **
13641128-C-A 11485452-C-A **
14992482-A-C 12880567-A-C **
10839909-T-A **
13226739-A-G 11071063-A-G **
7211330-C-A 7343289-C-A **
13880770-C-A 11760064-C-A **
10795024-C-A **
7436108-T-A 7568067-T-A **
13466425-T-A 11310749-T-A **
10882030-C-T **
10882015-C-CCTTCA **
10882004-C-G **
10881990-G-C **
16445693-C-A 14333813-C-A **
21979991-G-A 19818105-G-A **
17956056-CTT-C 15844176-CTT-C 13×T**
21786087-C-A 19624201-C-A **
10896056-C-A **
10775056-CACTCTA-C **
10775031-C-A **
15168081-C-A 13056167-C-A **
10753219-C-A **
7142488-C-A 7274447-C-A **
23848511-G-T 21686625-G-T **
5870046-C-A 6002005-C-A **
20510963-T-TA 18349077-T-TA P5_Dst **
5241167-C-CCTTTCTTT 5373126-C-CCTTTCTTT 11×CTTT**
10997496-T-C FT439722 **
10809415-C-A **
23438878-A-T 21276992-A-T **
7217228-C-A 7349187-C-A **
10821933-A-G **
10821886-C-T **
16003917-C-A 13892037-C-A **
23807097-A-G 21645211-A-G **
10814352-G-T **
10964369-C-A **
13477486-T-C 11321810-T-C **
21753491-C-A **
10753239-C-A **
10629693-A-G **
2970376-C-T 3102335-C-T **
19135296-C-A 17023416-C-A Y103765 **
10839893-A-C **
10753189-C-T **
10753244-C-A **
21753531-T-C **
21346265-C-A 19184379-C-A **
18390147-T-C 16278267-T-C P6_Gap **
22535924-C-A 20374038-C-A **
6293357-TTTTTTG-T 6425316-TTTTTTG-T IR3_Dst **
16017729-C-A 13905849-C-A **
10769005-T-A **
16432513-A-ATG 14320633-A-ATG 10×TG**
10942674-C-T **
28700533-C-A 26554386-C-A FT381609 **
10861298-T-C **
28763903-C-A 26617756-C-A **
28477618-C-A 26331471-C-A **
28506684-T-C 26360537-T-C **
28541884-C-A 26395737-C-A **
28546839-C-A 26400692-C-A **
28558821-T-A 26412674-T-A **
28567144-C-A 26420997-C-A **
28600318-G-T 26454171-G-T **
28610503-C-A 26464356-C-A **
28636188-A-T 26490041-A-T **
17569226-G-GAA 15457346-G-GAA 25×A**
28685470-C-A 26539323-C-A FTB53860 **
14639057-G-T 12527126-G-T **
28741180-C-A 26595033-C-A **
7195306-G-A 7327265-G-A S9942 **
28008157-C-A 25862010-C-A P1_Y2 **
28773543-C-A 26627396-C-A **
14143425-C-A 12022719-C-A BY202224 **
28776285-C-A 26630138-C-A **
28778887-A-T 26632740-A-T **
28800843-T-G 26654696-T-G **
28803703-A-G 26657556-A-G **
22446152-ACA-CT 20284266-ACA-CT DYZ19 **
56822437-A-T **
9645673-TG-T 9808064-TG-T IR3_Prx **
56848616-G-T **
56851328-T-A **
56873141-C-T **
6773836-C-A 6905795-C-A ****
56885503-G-T **
28401923-A-G 26255776-A-G P1_gr2 **
27937086-C-A 25790939-C-A P1_Y2 **
10821943-A-T **
10869038-C-T **
28609137-C-A 26462990-C-A **
10988570-C-CCTTCT **
10988556-A-C **
10821963-A-G **
10821962-C-G **
24455125-C-A 22308978-C-A **
10664792-T-TCCTA **
17622744-T-C 15510864-T-C A3424 **
10954345-C-A **
11015848-T-A **
11015847-C-A **
19547538-A-G 17435658-A-G **
14627135-C-A 12515203-C-A **
10759812-T-C **
10869020-T-C **
27914826-C-T 25768679-C-T P1_Y2 **
10869017-C-T **
10869013-C-CAGTAA **
24878399-G-T 22732252-G-T g1 **
21713458-T-C 19551572-T-C **
6293372-TG-T 6425331-TG-T IR3_Dst **
16896599-G-T 14784719-G-T **
19127644-AT-A 17015764-AT-A **
19472529-GTTT-G 17360649-GTTT-G 13×T**
23111737-C-A 20949851-C-A **
26079184-A-T 23933037-A-T P1_Y1 **
4634602-A-AAT 4766561-A-AAT 9×AT**
26514936-CA-C 24368789-CA-C P1_Y1 **
27127656-T-C 24981509-T-C P1_g3 **
27127658-C-CTGTTTCT 24981511-C-CTGTTTCT P1_g3 **
3887478-G-GA 4019437-G-GA 9×A**
5243384-A-T 5375343-A-T **
13522856-C-A 11367180-C-A **
3279892-C-A 3411851-C-A **
10933035-C-A **
23034499-C-A 20872613-C-A **
18053501-C-A 15941621-C-A **
22114856-G-T 19952970-G-T **
10026783-C-A 10189174-C-A **
9926758-C-A 10089149-C-A **
22135595-C-A 19973709-C-A **
9996189-T-C 10158580-T-C **
9996187-A-C 10158578-A-C **
8661757-C-A 8793716-C-A **
17503518-C-A 15391638-C-A **
10759815-C-G **
18101962-C-A 15990082-C-A **
16704344-C-A 14592464-C-A **
4786231-CA-C 4918190-CA-C 9×A**
2684083-T-C 2816042-T-C **
28773890-C-A 26627743-C-A **
14495778-C-A 12383975-C-A **
5185380-C-A 5317339-C-A **
15964660-C-A 13852780-C-A **
13487695-T-C 11332019-T-C **
13487687-T-C 11332011-T-C **
13487680-T-C 11332004-T-C **
22530199-G-T 20368313-G-T **
11677361-G-T **
10937365-A-C **
10664793-T-TC **
10664785-C-T **
10664784-C-G **
10987096-C-A **
2670547-G-T 2802506-G-T **
2750852-A-G 2882811-A-G **
16220930-C-A 14109050-C-A **
3360598-G-T 3492557-G-T **
22055335-A-T 19893449-A-T **
3853593-A-G 3985552-A-G **
3774005-C-T 3905964-C-T **
3689815-T-C 3821774-T-C **
20809483-TG-T 18647597-TG-T P4_Gap **
3663988-GT-G 3795947-GT-G **
3651511-CAA-C 3783470-CAA-C 9×A**
3626902-T-C 3758861-T-C **
3605889-T-C 3737848-T-C **
3560262-A-G 3692221-A-G **
3558086-A-C 3690045-A-C **
3557825-A-T 3689784-A-T **
3501886-AT-A 3633845-AT-A **
3375560-C-A 3507519-C-A **
3343147-C-A 3475106-C-A **
2759599-C-T 2891558-C-T **
3328369-C-A 3460328-C-A **
3323818-C-A 3455777-C-A **
3286624-C-A 3418583-C-A **
3165171-G-T 3297130-G-T **
3158702-C-A 3290661-C-A **
3147025-C-A 3278984-C-A **
3114988-A-ATT 3246947-A-ATT 14×T**
3050555-C-A 3182514-C-A **
3011692-C-A 3143651-C-A **
2934117-C-A 3066076-C-A **
2854809-T-A 2986768-T-A **
2833361-T-A 2965320-T-A **
2773803-T-C 2905762-T-C **
2770234-A-G 2902193-A-G **
16029582-C-A 13917702-C-A **
20440399-T-TTGTTGC 18278513-T-TTGTTGC P5_Dst **
15770443-C-A 13658563-C-A **
13975804-C-A 11855098-C-A **
10875720-C-A **
23345910-G-C 21184024-G-C **
8001980-T-TA 8133939-T-TA 9×A**
10822145-C-A **
8052368-C-A 8184327-C-A **
6770702-C-A 6902661-C-A **
10824262-G-T **
10749141-C-T **
13941113-C-A 11820407-C-A **
10767067-C-A **
28762590-C-A 26616443-C-A **
22097254-C-A 19935368-C-A **
26326158-C-A 24180011-C-A P1_Y1 **
10937358-C-A **
21589490-C-A 19427604-C-A **
28714368-C-A 26568221-C-A **
10942684-C-A **
16279138-C-A 14167258-C-A **
25990661-AG-T 23844514-AG-T P1_Y1 **
10746866-T-A **
10677988-G-T **
23439882-G-T 21277996-G-T **
10964311-C-A **
16147491-AGAGAG-A 14035611-AGAGAG-A P8_Dst **
11015890-T-A **
23773586-C-A 21611700-C-A **
9980640-C-A 10143031-C-A **
9075285-A-G 9237676-A-G **
20747300-T-TC 18585414-T-TC P4_Prx **
16490712-C-A 14378832-C-A FT356905 **
23364270-C-A 21202384-C-A **
14527203-C-A 12415404-C-A **
20950548-C-A 18788662-C-A P4_Dst **
9107825-G-T **
10965457-C-A **
13613654-C-A 11457978-C-A **
4065964-C-A 4197923-C-A **
10759869-C-A **
13896974-C-A 11776268-C-A **
9996176-G-C 10158567-G-C **
17913073-C-A 15801193-C-A **
13489009-C-G 11333333-C-G **
13488992-T-G 11333316-T-G **
22623497-T-C 20461611-T-C **
5189297-C-A 5321256-C-A **
22639791-G-T 20477905-G-T **
10973630-T-C **
13196103-C-A 11040427-C-A **
4925237-C-A 5057196-C-A **
19043046-C-A 16931166-C-A **
10844635-CTCCAT-C **
22836702-C-A 20674816-C-A **
22982909-T-A 20821023-T-A **
9046939-G-T 9209330-G-T **
14367905-G-T 12247201-G-T **
10683439-C-A **
3152375-C-A 3284334-C-A **
23188292-C-A 21026406-C-A **
23465788-G-T 21303902-G-T **
19043065-C-A 16931185-C-A **
16070758-C-A 13958878-C-A **
23205356-C-A 21043470-C-A **
21329418-C-A 19167532-C-A ***
56844939-C-A ***
56837176-C-A ***
22085493-A-T 19923607-A-T ***
21895489-G-A 19733603-G-A ***
21753631-C-A ***
21211554-C-A 19049668-C-A ***
13679892-A-G 11524216-A-G ***
15864266-C-A 13752386-C-A ***
22226371-G-A 20064485-G-A DYZ19 ***
25161130-G-A 23014983-G-A g1 ***
58976174-C-T 56830027-C-T ***
13473794-C-T 11318118-C-T ***
13473802-G-T 11318126-G-T F10799 ***
13647934-T-A 11492258-T-A ***
22220316-T-A 20058430-T-A DYZ19 ***
22292274-C-T 20130388-C-T DYZ19 ***
13475382-C-A 11319706-C-A ***
22314492-G-A 20152606-G-A DYZ19 ***
22353353-G-T 20191467-G-T DYZ19 ***
25024098-G-A 22877951-G-A g1 ***
25168029-C-G 23021882-C-G g1 ***
26220345-C-A 24074198-C-A P1_Y1 ***
22540050-CA-C 20378164-CA-C 10×A***
13803204-A-T 11682498-A-T ***
13845470-G-A 11724764-G-A Z12774 ***
11014359-T-C ***
13828692-A-G 11707986-A-G ***
28784822-G-A 26638675-G-A ***
19739340-A-AAACAAC 17627460-A-AAACAAC P5_Prx 13×AAC***
18222356-GA-G 16110476-GA-G 10×A***
28784818-A-T 26638671-A-T ***
28803842-A-T 26657695-A-T FGC9650 ***
28803783-T-G 26657636-T-G BY18 ***
14251935-TA-T 12131229-TA-T 10×A***
16340147-G-A 14228267-G-A 22×A***
13828761-G-A 11708055-G-A ***
28784810-G-GAGTTT 26638663-G-GAGTTT ***
23484492-C-A 21322606-C-A ******
18028760-ATACAG-A 15916880-ATACAG-A ***
9979864-T-TA 10142255-T-TA ***
14374977-CAG-C 12254273-CAG-C ***
10869000-C-T ***
11643714-G-T ***
14916890-CAAAA-C,CAA 12804957-CAAAA-C,CAA 15×A***
10796718-A-ATTCCG ***
4902040-G-T 5033999-G-T ***
8385298-C-T 8517257-C-T ***
10024216-C-A 10186607-C-A ***
10655082-T-C ***
10667019-C-CA ***
10667023-CC-A ***
10818826-A-C ***
3865902-A-G 3997861-A-G ***
10981179-C-A ***
11026074-A-G ***
13474344-C-A 11318668-C-A ***
13643156-C-A 11487480-C-A ***
11668638-C-A ***
14858569-A-G 12746635-A-G ***
4179047-C-T 4311006-C-T ***
3609908-C-A 3741867-C-A ***
56834941-G-T ***
17181588-G-T 15069708-G-T ***
13258777-ATT-A 11103101-ATT-A 11×T***
15605218-ATT-A 13493338-ATT-A 13×T***
10775325-C-A ***
10667034-C-A ***
10667019-C-G ***
21754302-G-T ***
10845632-A-G ***
10845649-T-G ***
10845633-T-A ***
14230227-G-T 12109521-G-T ***
10935519-CTCCTT-C,CTCCAT ***
11017980-C-A ***
27127662-C-T 24981515-C-T P1_g3 ***
10746907-CA-C ***
30641-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4974741081395178490057934604
Kit: 497474986674080081607886177
Used in age calculations1081395180081607934604
Counts of SNPs109
Variant counts last updated 2023-03-27 03:34:04.


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