Leary
FTDNA: 497474, BigY2: 497474Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 497474 | BigY2 497474 |
---|---|---|---|---|---|---|---|---|---|
18048758-T-G | 15936878-T-G | BY211741 | Y | Y | + | + | |||
17212028-A-G | 15100148-A-G | BY113092 | Y | Y | + | + | |||
7942940-G-A | 8074899-G-A | BY68943 | Y | Y | + | + | |||
8466880-G-C | 8598839-G-C | BY73054 | Y | Y | + | + | |||
13720250-C-A | 11564574-C-A | + | |||||||
15085542-T-C | 12973632-T-C | BY99641 | Y | Y | + | + | |||
16631319-G-T | 14519439-G-T | BY109083 | Y | Y | + | + | |||
14143824-C-A | 12023118-C-A | Z42332 Y24129 | Y | Y | + | + | |||
22444960-C-G | 20283074-C-G | BY219520 | DYZ19 | + | |||||
18640848-A-G | 16528968-A-G | BY122781 | Y | Y | + | + | |||
21184323-TGA-T | 19022437-TGA-T | + | + | ||||||
22215459-C-G | 20053573-C-G | BY138530 | Y | + | + | ||||
17391713-T-A | 15279833-T-A | FTA45988 | Y | Y | *** | * | |||
22869522-C-CAT | 20707636-C-CAT | *** | * | ||||||
22269322-G-T | 20107436-G-T | DYZ19 | * | ||||||
7370417-TC-T | 7502376-TC-T | ** | |||||||
7541109-A-G | 7673068-A-G | ** | |||||||
7536541-C-A | 7668500-C-A | ** | |||||||
7424621-G-T | 7556580-G-T | ** | |||||||
7409399-C-A | 7541358-C-A | ** | |||||||
7397601-C-A | 7529560-C-A | ** | |||||||
7392212-GT-G | 7524171-GT-G | ** | |||||||
7392210-GT-G | 7524169-GT-G | ** | |||||||
7320210-T-C | 7452169-T-C | ** | |||||||
7343030-C-A | 7474989-C-A | ** | |||||||
6983832-C-A | 7115791-C-A | ** | |||||||
6730250-T-A | 6862209-T-A | ** | |||||||
6756121-G-A | 6888080-G-A | ** | |||||||
6778980-G-A | 6910939-G-A | ALK31 | ** | ||||||
6779000-C-A | 6910959-C-A | ** | |||||||
6780716-A-T | 6912675-A-T | ** | |||||||
6828850-G-T | 6960809-G-T | ** | |||||||
6882096-T-C | 7014055-T-C | ** | |||||||
6886767-T-A | 7018726-T-A | ** | |||||||
6984719-G-A | 7116678-G-A | FT178834 | ** | ||||||
7829311-T-A | 7961270-T-A | ** | |||||||
7013581-T-G | 7145540-T-G | ** | |||||||
7050319-A-G | 7182278-A-G | ** | |||||||
7128340-C-A | 7260299-C-A | ** | |||||||
7201482-C-A | 7333441-C-A | ** | |||||||
7204782-G-A | 7336741-G-A | ** | |||||||
7209968-T-G | 7341927-T-G | ** | |||||||
7241911-T-G | 7373870-T-G | ** | |||||||
7269698-A-G | 7401657-A-G | ** | |||||||
7299690-T-C | 7431649-T-C | ** | |||||||
7645215-T-C | 7777174-T-C | ** | |||||||
4840678-T-A | 4972637-T-A | ** | |||||||
7861098-A-C | 7993057-A-C | ** | |||||||
21832334-A-C | 19670448-A-C | ** | |||||||
10756664-C-A | ** | ||||||||
10753224-C-A | ** | ||||||||
10752722-C-T | ** | ||||||||
10752713-T-A | ** | ||||||||
10752236-T-C | ** | ||||||||
10747946-C-G | ** | ||||||||
10673664-C-A | ** | ||||||||
10671927-G-T | ** | ||||||||
21522491-C-A | 19360605-C-A | ** | |||||||
21555433-C-A | 19393547-C-A | ** | |||||||
10662561-C-A | ** | ||||||||
10655432-T-C | ** | ||||||||
21824916-A-G | 19663030-A-G | ** | |||||||
10651537-C-A | ** | ||||||||
9996190-C-A | 10158581-C-A | ** | |||||||
8238303-G-T | 8370262-G-T | ** | |||||||
8735103-G-A | 8867062-G-A | ** | |||||||
8295526-C-T | 8427485-C-T | ** | |||||||
8343018-C-A | 8474977-C-A | ** | |||||||
8344580-C-A | 8476539-C-A | ** | |||||||
8379242-C-A | 8511201-C-A | ** | |||||||
21862149-T-G | 19700263-T-G | ** | |||||||
8481937-C-G | 8613896-C-G | ** | |||||||
8792995-C-A | 8924954-C-A | ** | |||||||
9965256-T-C | 10127647-T-C | ** | |||||||
9108353-T-G | ** | ||||||||
9063824-G-T | 9226215-G-T | ** | |||||||
9371347-T-G | 9533738-T-G | ** | |||||||
9654491-A-C | 9816882-A-C | IR3_Prx | ** | ||||||
9938493-A-T | 10100884-A-T | ** | |||||||
9956503-T-C | 10118894-T-C | ** | |||||||
6709429-G-T | 6841388-G-T | ** | |||||||
6460110-T-C | 6592069-T-C | FT152957 | ** | ||||||
6694767-A-C | 6826726-A-C | ** | |||||||
4449341-A-T | 4581300-A-T | ** | |||||||
4937053-A-C | 5069012-A-C | ** | |||||||
13859352-A-G | 11738646-A-G | ** | |||||||
4840153-C-A | 4972112-C-A | ** | |||||||
4809830-G-T | 4941789-G-T | ** | |||||||
4804707-C-A | 4936666-C-A | ** | |||||||
4799050-T-C | 4931009-T-C | ** | |||||||
4793934-G-T | 4925893-G-T | ** | |||||||
4771612-T-A | 4903571-T-A | ** | |||||||
4586612-T-A | 4718571-T-A | ** | |||||||
4584745-C-A | 4716704-C-A | ** | |||||||
4547301-A-T | 4679260-A-T | ** | |||||||
4506780-G-T | 4638739-G-T | ** | |||||||
4498900-T-C | 4630859-T-C | ** | |||||||
4447937-C-A | 4579896-C-A | ** | |||||||
5118770-T-C | 5250729-T-C | ** | |||||||
4320506-T-C | 4452465-T-C | ** | |||||||
4302915-C-A | 4434874-C-A | ** | |||||||
4296784-C-A | 4428743-C-A | ** | |||||||
4237365-C-A | 4369324-C-A | ** | |||||||
4234533-C-A | 4366492-C-A | ** | |||||||
4230088-C-T | 4362047-C-T | ** | |||||||
4215965-G-A | 4347924-G-A | ** | |||||||
4212737-T-A | 4344696-T-A | ** | |||||||
21953626-C-A | 19791740-C-A | ** | |||||||
4172510-A-C | 4304469-A-C | ** | |||||||
4130605-G-T | 4262564-G-T | ** | |||||||
4123766-A-T | 4255725-A-T | ** | |||||||
4063209-A-T | 4195168-A-T | ** | |||||||
4062291-C-A | 4194250-C-A | ** | |||||||
5061098-G-C | 5193057-G-C | ** | |||||||
5131033-T-G | 5262992-T-G | ** | |||||||
6646070-C-A | 6778029-C-A | ** | |||||||
5709121-A-T | 5841080-A-T | ** | |||||||
6612152-G-T | 6744111-G-T | ** | |||||||
6510129-C-A | 6642088-C-A | ** | |||||||
6491942-A-C | 6623901-A-C | ** | |||||||
6491393-A-T | 6623352-A-T | ** | |||||||
10783442-A-C | ** | ||||||||
6205147-T-C | 6337106-T-C | IR3_Dst | ** | ||||||
5965613-C-A | 6097572-C-A | ** | |||||||
5901547-C-A | 6033506-C-A | ** | |||||||
5889209-T-A | 6021168-T-A | ** | |||||||
5871288-C-A | 6003247-C-A | ** | |||||||
5853806-A-G | 5985765-A-G | ** | |||||||
5834373-C-A | 5966332-C-A | ** | |||||||
5830358-C-T | 5962317-C-T | ** | |||||||
5789343-T-A | 5921302-T-A | ** | |||||||
5684558-G-T | 5816517-G-T | FGC58737 | ** | ||||||
5189311-T-G | 5321270-T-G | ** | |||||||
5550085-C-A | 5682044-C-A | ** | |||||||
5501229-C-A | 5633188-C-A | ** | |||||||
5449461-G-T | 5581420-G-T | ** | |||||||
5447162-G-T | 5579121-G-T | ** | |||||||
5427685-C-A | 5559644-C-A | ** | |||||||
5420629-T-G | 5552588-T-G | ** | |||||||
5383959-C-A | 5515918-C-A | ** | |||||||
5383941-C-A | 5515900-C-A | ** | |||||||
5358664-A-T | 5490623-A-T | ** | |||||||
5354409-C-G | 5486368-C-G | ** | |||||||
5242324-C-A | 5374283-C-A | ** | |||||||
5241832-G-T | 5373791-G-T | ** | |||||||
5211757-C-A | 5343716-C-A | ** | |||||||
5189383-C-T | 5321342-C-T | ** | |||||||
10782636-T-G | ** | ||||||||
10831142-C-G | ** | ||||||||
10788445-C-A | ** | ||||||||
15987804-T-C | 13875924-T-C | ** | |||||||
16620442-T-C | 14508562-T-C | ** | |||||||
16620259-C-A | 14508379-C-A | ** | |||||||
16575073-G-A | 14463193-G-A | ** | |||||||
16426318-C-A | 14314438-C-A | ** | |||||||
16384700-T-C | 14272820-T-C | ** | |||||||
16342646-G-T | 14230766-G-T | ** | |||||||
16320619-C-T | 14208739-C-T | ** | |||||||
16320616-A-G | 14208736-A-G | ** | |||||||
16320576-C-G | 14208696-C-G | ** | |||||||
16177014-C-A | 14065134-C-A | ** | |||||||
16108702-C-CTTTCGTTTCT | 13996822-C-CTTTCGTTTCT | P8_Prx | 10×TTTCT | ** | |||||
16096013-A-G | 13984133-A-G | ** | |||||||
16081244-G-T | 13969364-G-T | ** | |||||||
16001511-G-T | 13889631-G-T | ** | |||||||
15932467-C-T | 13820587-C-T | ** | |||||||
16941504-C-A | 14829624-C-A | ** | |||||||
15922455-T-C | 13810575-T-C | ** | |||||||
21060646-C-T | 18898760-C-T | ** | |||||||
15790520-G-A | 13678640-G-A | ** | |||||||
15746135-A-G | 13634255-A-G | ** | |||||||
15735739-CCTTTG-C | 13623859-CCTTTG-C | ** | |||||||
15643039-C-A | 13531159-C-A | ** | |||||||
15570692-C-A | 13458812-C-A | ** | |||||||
15496389-A-G | 13384509-A-G | ** | |||||||
15342690-A-T | 13230809-A-T | ** | |||||||
15342544-C-A | 13230663-C-A | ** | |||||||
15290108-A-G | 13178207-A-G | ** | |||||||
15281519-A-G | 13169618-A-G | ** | |||||||
15280413-C-A | 13168512-C-A | ** | |||||||
15280230-TTACC-T | 13168329-TTACC-T | ** | |||||||
16814084-C-A | 14702204-C-A | ** | |||||||
17046653-A-T | 14934773-A-T | ** | |||||||
15068909-C-A | 12957000-C-A | ** | |||||||
18390148-G-A | 16278268-G-A | P6_Gap | ** | ||||||
20350283-C-A | 18188397-C-A | P5_Dst | ** | ||||||
19785344-A-AT | 17673464-A-AT | P5_Prx | ** | ||||||
19568470-C-A | 17456590-C-A | P5_Prx | ** | ||||||
19558302-T-A | 17446422-T-A | ** | |||||||
19532416-C-A | 17420536-C-A | ** | |||||||
19324178-G-C | 17212298-G-C | ** | |||||||
19302221-T-A | 17190341-T-A | ** | |||||||
19097310-C-A | 16985430-C-A | ** | |||||||
19075149-A-G | 16963269-A-G | ** | |||||||
19040824-G-T | 16928944-G-T | ** | |||||||
18876726-C-A | 16764846-C-A | ** | |||||||
18766673-G-T | 16654793-G-T | ** | |||||||
18630960-A-G | 16519080-A-G | ** | |||||||
18540016-T-A | 16428136-T-A | ** | |||||||
18390134-A-G | 16278254-A-G | P6_Gap | ** | ||||||
17135796-A-G | 15023916-A-G | ** | |||||||
18190712-C-A | 16078832-C-A | ** | |||||||
18187679-G-T | 16075799-G-T | ** | |||||||
18185369-C-T | 16073489-C-T | ** | |||||||
18165982-A-T | 16054102-A-T | ** | |||||||
18094119-C-T | 15982239-C-T | ** | |||||||
17883853-A-G | 15771973-A-G | ** | |||||||
17859429-G-T | 15747549-G-T | ** | |||||||
17770432-A-C | 15658552-A-C | ** | |||||||
17717193-C-G | 15605313-C-G | ** | |||||||
17548186-C-T | 15436306-C-T | ** | |||||||
17511680-C-A | 15399800-C-A | ** | |||||||
17466572-A-G | 15354692-A-G | ** | |||||||
17445491-C-A | 15333611-C-A | ** | |||||||
17159037-C-A | 15047157-C-A | ** | |||||||
15180053-G-T | 13068139-G-T | ** | |||||||
14990229-T-A | 12878314-T-A | ** | |||||||
10790216-C-A | ** | ||||||||
10937374-C-T | ** | ||||||||
13196942-C-A | 11041266-C-A | ** | |||||||
11024299-T-A | ** | ||||||||
10997591-G-A | ** | ||||||||
10992936-C-A | ** | ||||||||
10984185-C-A | ** | ||||||||
10983288-C-G | ** | ||||||||
21383182-C-A | 19221296-C-A | ** | |||||||
10972971-T-A | FT438715 | ** | |||||||
10964210-T-C | ** | ||||||||
10964209-T-A | ** | ||||||||
10960678-C-A | ** | ||||||||
10950781-C-A | ** | ||||||||
10942694-T-TTAAAC | ** | ||||||||
10938831-G-T | ** | ||||||||
10926463-C-A | ** | ||||||||
13216646-T-A | 11060970-T-A | ** | |||||||
10886044-C-A | ** | ||||||||
10878598-C-A | ** | ||||||||
10867850-C-A | ** | ||||||||
10864656-T-G | ** | ||||||||
10861273-G-A | ** | ||||||||
10861263-C-CTCAAA | ** | ||||||||
10842426-T-G | ** | ||||||||
10831173-G-A | ** | ||||||||
3951994-G-T | 4083953-G-T | ** | |||||||
10830316-T-C | ** | ||||||||
10828301-C-A | ** | ||||||||
21409258-A-T | 19247372-A-T | ** | |||||||
10815928-T-A | ** | ||||||||
21495512-C-A | 19333626-C-A | ** | |||||||
13202498-C-A | 11046822-C-A | ** | |||||||
13324942-A-T | 11169266-A-T | ** | |||||||
21154662-G-T | 18992776-G-T | ** | |||||||
14017379-C-A | 11896673-C-A | ** | |||||||
14845477-A-G | 12733543-A-G | ** | |||||||
14815441-A-G | 12703512-A-G | ** | |||||||
14721727-C-A | 12609795-C-A | ** | |||||||
14614699-G-C | 12502897-G-C | ** | |||||||
14589910-C-T | 12478110-C-T | ** | |||||||
14560534-C-A | 12448735-C-A | ** | |||||||
14559207-C-A | 12447408-C-A | ** | |||||||
14558528-C-A | 12446729-C-A | ** | |||||||
14558526-A-T | 12446727-A-T | ** | |||||||
14448174-A-G | 12327447-A-G | ** | |||||||
14279979-C-A | 12159273-C-A | ** | |||||||
14233411-C-A | 12112705-C-A | ** | |||||||
14074450-C-A | 11953744-C-A | ** | |||||||
14017387-A-G | 11896681-A-G | ** | |||||||
14009579-GA-G | 11888873-GA-G | ** | |||||||
21269257-G-T | 19107371-G-T | Y33017 | ** | ||||||
21243842-C-A | 19081956-C-A | ** | |||||||
13485798-T-A | 11330122-T-A | ** | |||||||
13544934-C-A | 11389258-C-A | ** | |||||||
13624149-G-A | 11468473-G-A | ** | |||||||
21248600-C-T | 19086714-C-T | ** | |||||||
11648592-T-C | ** | ||||||||
11652848-T-A | ** | ||||||||
11673643-A-C | ** | ||||||||
13974803-C-A | 11854097-C-A | ** | |||||||
13859244-A-T | 11738538-A-T | ** | |||||||
13875665-G-T | 11754959-G-T | ** | |||||||
13906260-C-T | 11785554-C-T | ** | |||||||
13929213-C-A | 11808507-C-A | ** | |||||||
13931404-G-T | 11810698-G-T | ** | |||||||
13973897-C-A | 11853191-C-A | ** | |||||||
4042022-A-T | 4173981-A-T | ** | |||||||
3686667-A-G | 3818626-A-G | ** | |||||||
3946393-T-C | 4078352-T-C | ** | |||||||
10821928-A-T | ** | ||||||||
15447090-C-A | 13335210-C-A | ** | |||||||
17871845-C-A | 15759965-C-A | ** | |||||||
2981201-G-T | 3113160-G-T | ** | |||||||
10753181-C-A | ** | ||||||||
10821906-C-G | ** | ||||||||
10753229-C-A | ** | ||||||||
10753190-T-C | FT429703 | ** | |||||||
2839997-C-A | 2971956-C-A | ** | |||||||
7045754-C-A | 7177713-C-A | ** | |||||||
13641128-C-A | 11485452-C-A | ** | |||||||
14992482-A-C | 12880567-A-C | ** | |||||||
10839909-T-A | ** | ||||||||
13226739-A-G | 11071063-A-G | ** | |||||||
7211330-C-A | 7343289-C-A | ** | |||||||
13880770-C-A | 11760064-C-A | ** | |||||||
10795024-C-A | ** | ||||||||
7436108-T-A | 7568067-T-A | ** | |||||||
13466425-T-A | 11310749-T-A | ** | |||||||
10882030-C-T | ** | ||||||||
10882015-C-CCTTCA | ** | ||||||||
10882004-C-G | ** | ||||||||
10881990-G-C | ** | ||||||||
16445693-C-A | 14333813-C-A | ** | |||||||
21979991-G-A | 19818105-G-A | ** | |||||||
17956056-CTT-C | 15844176-CTT-C | 13×T | ** | ||||||
21786087-C-A | 19624201-C-A | ** | |||||||
10896056-C-A | ** | ||||||||
10775056-CACTCTA-C | ** | ||||||||
10775031-C-A | ** | ||||||||
15168081-C-A | 13056167-C-A | ** | |||||||
10753219-C-A | ** | ||||||||
7142488-C-A | 7274447-C-A | ** | |||||||
23848511-G-T | 21686625-G-T | ** | |||||||
5870046-C-A | 6002005-C-A | ** | |||||||
20510963-T-TA | 18349077-T-TA | P5_Dst | ** | ||||||
5241167-C-CCTTTCTTT | 5373126-C-CCTTTCTTT | 11×CTTT | ** | ||||||
10997496-T-C | FT439722 | ** | |||||||
10809415-C-A | ** | ||||||||
23438878-A-T | 21276992-A-T | ** | |||||||
7217228-C-A | 7349187-C-A | ** | |||||||
10821933-A-G | ** | ||||||||
10821886-C-T | ** | ||||||||
16003917-C-A | 13892037-C-A | ** | |||||||
23807097-A-G | 21645211-A-G | ** | |||||||
10814352-G-T | ** | ||||||||
10964369-C-A | ** | ||||||||
13477486-T-C | 11321810-T-C | ** | |||||||
21753491-C-A | ** | ||||||||
10753239-C-A | ** | ||||||||
10629693-A-G | ** | ||||||||
2970376-C-T | 3102335-C-T | ** | |||||||
19135296-C-A | 17023416-C-A | Y103765 | ** | ||||||
10839893-A-C | ** | ||||||||
10753189-C-T | ** | ||||||||
10753244-C-A | ** | ||||||||
21753531-T-C | ** | ||||||||
21346265-C-A | 19184379-C-A | ** | |||||||
18390147-T-C | 16278267-T-C | P6_Gap | ** | ||||||
22535924-C-A | 20374038-C-A | ** | |||||||
6293357-TTTTTTG-T | 6425316-TTTTTTG-T | IR3_Dst | ** | ||||||
16017729-C-A | 13905849-C-A | ** | |||||||
10769005-T-A | ** | ||||||||
16432513-A-ATG | 14320633-A-ATG | 10×TG | ** | ||||||
10942674-C-T | ** | ||||||||
28700533-C-A | 26554386-C-A | FT381609 | ** | ||||||
10861298-T-C | ** | ||||||||
28763903-C-A | 26617756-C-A | ** | |||||||
28477618-C-A | 26331471-C-A | ** | |||||||
28506684-T-C | 26360537-T-C | ** | |||||||
28541884-C-A | 26395737-C-A | ** | |||||||
28546839-C-A | 26400692-C-A | ** | |||||||
28558821-T-A | 26412674-T-A | ** | |||||||
28567144-C-A | 26420997-C-A | ** | |||||||
28600318-G-T | 26454171-G-T | ** | |||||||
28610503-C-A | 26464356-C-A | ** | |||||||
28636188-A-T | 26490041-A-T | ** | |||||||
17569226-G-GAA | 15457346-G-GAA | 25×A | ** | ||||||
28685470-C-A | 26539323-C-A | FTB53860 | ** | ||||||
14639057-G-T | 12527126-G-T | ** | |||||||
28741180-C-A | 26595033-C-A | ** | |||||||
7195306-G-A | 7327265-G-A | S9942 | ** | ||||||
28008157-C-A | 25862010-C-A | P1_Y2 | ** | ||||||
28773543-C-A | 26627396-C-A | ** | |||||||
14143425-C-A | 12022719-C-A | BY202224 | ** | ||||||
28776285-C-A | 26630138-C-A | ** | |||||||
28778887-A-T | 26632740-A-T | ** | |||||||
28800843-T-G | 26654696-T-G | ** | |||||||
28803703-A-G | 26657556-A-G | ** | |||||||
22446152-ACA-CT | 20284266-ACA-CT | DYZ19 | ** | ||||||
56822437-A-T | ** | ||||||||
9645673-TG-T | 9808064-TG-T | IR3_Prx | ** | ||||||
56848616-G-T | ** | ||||||||
56851328-T-A | ** | ||||||||
56873141-C-T | ** | ||||||||
6773836-C-A | 6905795-C-A | ** | ** | ||||||
56885503-G-T | ** | ||||||||
28401923-A-G | 26255776-A-G | P1_gr2 | ** | ||||||
27937086-C-A | 25790939-C-A | P1_Y2 | ** | ||||||
10821943-A-T | ** | ||||||||
10869038-C-T | ** | ||||||||
28609137-C-A | 26462990-C-A | ** | |||||||
10988570-C-CCTTCT | ** | ||||||||
10988556-A-C | ** | ||||||||
10821963-A-G | ** | ||||||||
10821962-C-G | ** | ||||||||
24455125-C-A | 22308978-C-A | ** | |||||||
10664792-T-TCCTA | ** | ||||||||
17622744-T-C | 15510864-T-C | A3424 | ** | ||||||
10954345-C-A | ** | ||||||||
11015848-T-A | ** | ||||||||
11015847-C-A | ** | ||||||||
19547538-A-G | 17435658-A-G | ** | |||||||
14627135-C-A | 12515203-C-A | ** | |||||||
10759812-T-C | ** | ||||||||
10869020-T-C | ** | ||||||||
27914826-C-T | 25768679-C-T | P1_Y2 | ** | ||||||
10869017-C-T | ** | ||||||||
10869013-C-CAGTAA | ** | ||||||||
24878399-G-T | 22732252-G-T | g1 | ** | ||||||
21713458-T-C | 19551572-T-C | ** | |||||||
6293372-TG-T | 6425331-TG-T | IR3_Dst | ** | ||||||
16896599-G-T | 14784719-G-T | ** | |||||||
19127644-AT-A | 17015764-AT-A | ** | |||||||
19472529-GTTT-G | 17360649-GTTT-G | 13×T | ** | ||||||
23111737-C-A | 20949851-C-A | ** | |||||||
26079184-A-T | 23933037-A-T | P1_Y1 | ** | ||||||
4634602-A-AAT | 4766561-A-AAT | 9×AT | ** | ||||||
26514936-CA-C | 24368789-CA-C | P1_Y1 | ** | ||||||
27127656-T-C | 24981509-T-C | P1_g3 | ** | ||||||
27127658-C-CTGTTTCT | 24981511-C-CTGTTTCT | P1_g3 | ** | ||||||
3887478-G-GA | 4019437-G-GA | 9×A | ** | ||||||
5243384-A-T | 5375343-A-T | ** | |||||||
13522856-C-A | 11367180-C-A | ** | |||||||
3279892-C-A | 3411851-C-A | ** | |||||||
10933035-C-A | ** | ||||||||
23034499-C-A | 20872613-C-A | ** | |||||||
18053501-C-A | 15941621-C-A | ** | |||||||
22114856-G-T | 19952970-G-T | ** | |||||||
10026783-C-A | 10189174-C-A | ** | |||||||
9926758-C-A | 10089149-C-A | ** | |||||||
22135595-C-A | 19973709-C-A | ** | |||||||
9996189-T-C | 10158580-T-C | ** | |||||||
9996187-A-C | 10158578-A-C | ** | |||||||
8661757-C-A | 8793716-C-A | ** | |||||||
17503518-C-A | 15391638-C-A | ** | |||||||
10759815-C-G | ** | ||||||||
18101962-C-A | 15990082-C-A | ** | |||||||
16704344-C-A | 14592464-C-A | ** | |||||||
4786231-CA-C | 4918190-CA-C | 9×A | ** | ||||||
2684083-T-C | 2816042-T-C | ** | |||||||
28773890-C-A | 26627743-C-A | ** | |||||||
14495778-C-A | 12383975-C-A | ** | |||||||
5185380-C-A | 5317339-C-A | ** | |||||||
15964660-C-A | 13852780-C-A | ** | |||||||
13487695-T-C | 11332019-T-C | ** | |||||||
13487687-T-C | 11332011-T-C | ** | |||||||
13487680-T-C | 11332004-T-C | ** | |||||||
22530199-G-T | 20368313-G-T | ** | |||||||
11677361-G-T | ** | ||||||||
10937365-A-C | ** | ||||||||
10664793-T-TC | ** | ||||||||
10664785-C-T | ** | ||||||||
10664784-C-G | ** | ||||||||
10987096-C-A | ** | ||||||||
2670547-G-T | 2802506-G-T | ** | |||||||
2750852-A-G | 2882811-A-G | ** | |||||||
16220930-C-A | 14109050-C-A | ** | |||||||
3360598-G-T | 3492557-G-T | ** | |||||||
22055335-A-T | 19893449-A-T | ** | |||||||
3853593-A-G | 3985552-A-G | ** | |||||||
3774005-C-T | 3905964-C-T | ** | |||||||
3689815-T-C | 3821774-T-C | ** | |||||||
20809483-TG-T | 18647597-TG-T | P4_Gap | ** | ||||||
3663988-GT-G | 3795947-GT-G | ** | |||||||
3651511-CAA-C | 3783470-CAA-C | 9×A | ** | ||||||
3626902-T-C | 3758861-T-C | ** | |||||||
3605889-T-C | 3737848-T-C | ** | |||||||
3560262-A-G | 3692221-A-G | ** | |||||||
3558086-A-C | 3690045-A-C | ** | |||||||
3557825-A-T | 3689784-A-T | ** | |||||||
3501886-AT-A | 3633845-AT-A | ** | |||||||
3375560-C-A | 3507519-C-A | ** | |||||||
3343147-C-A | 3475106-C-A | ** | |||||||
2759599-C-T | 2891558-C-T | ** | |||||||
3328369-C-A | 3460328-C-A | ** | |||||||
3323818-C-A | 3455777-C-A | ** | |||||||
3286624-C-A | 3418583-C-A | ** | |||||||
3165171-G-T | 3297130-G-T | ** | |||||||
3158702-C-A | 3290661-C-A | ** | |||||||
3147025-C-A | 3278984-C-A | ** | |||||||
3114988-A-ATT | 3246947-A-ATT | 14×T | ** | ||||||
3050555-C-A | 3182514-C-A | ** | |||||||
3011692-C-A | 3143651-C-A | ** | |||||||
2934117-C-A | 3066076-C-A | ** | |||||||
2854809-T-A | 2986768-T-A | ** | |||||||
2833361-T-A | 2965320-T-A | ** | |||||||
2773803-T-C | 2905762-T-C | ** | |||||||
2770234-A-G | 2902193-A-G | ** | |||||||
16029582-C-A | 13917702-C-A | ** | |||||||
20440399-T-TTGTTGC | 18278513-T-TTGTTGC | P5_Dst | ** | ||||||
15770443-C-A | 13658563-C-A | ** | |||||||
13975804-C-A | 11855098-C-A | ** | |||||||
10875720-C-A | ** | ||||||||
23345910-G-C | 21184024-G-C | ** | |||||||
8001980-T-TA | 8133939-T-TA | 9×A | ** | ||||||
10822145-C-A | ** | ||||||||
8052368-C-A | 8184327-C-A | ** | |||||||
6770702-C-A | 6902661-C-A | ** | |||||||
10824262-G-T | ** | ||||||||
10749141-C-T | ** | ||||||||
13941113-C-A | 11820407-C-A | ** | |||||||
10767067-C-A | ** | ||||||||
28762590-C-A | 26616443-C-A | ** | |||||||
22097254-C-A | 19935368-C-A | ** | |||||||
26326158-C-A | 24180011-C-A | P1_Y1 | ** | ||||||
10937358-C-A | ** | ||||||||
21589490-C-A | 19427604-C-A | ** | |||||||
28714368-C-A | 26568221-C-A | ** | |||||||
10942684-C-A | ** | ||||||||
16279138-C-A | 14167258-C-A | ** | |||||||
25990661-AG-T | 23844514-AG-T | P1_Y1 | ** | ||||||
10746866-T-A | ** | ||||||||
10677988-G-T | ** | ||||||||
23439882-G-T | 21277996-G-T | ** | |||||||
10964311-C-A | ** | ||||||||
16147491-AGAGAG-A | 14035611-AGAGAG-A | P8_Dst | ** | ||||||
11015890-T-A | ** | ||||||||
23773586-C-A | 21611700-C-A | ** | |||||||
9980640-C-A | 10143031-C-A | ** | |||||||
9075285-A-G | 9237676-A-G | ** | |||||||
20747300-T-TC | 18585414-T-TC | P4_Prx | ** | ||||||
16490712-C-A | 14378832-C-A | FT356905 | ** | ||||||
23364270-C-A | 21202384-C-A | ** | |||||||
14527203-C-A | 12415404-C-A | ** | |||||||
20950548-C-A | 18788662-C-A | P4_Dst | ** | ||||||
9107825-G-T | ** | ||||||||
10965457-C-A | ** | ||||||||
13613654-C-A | 11457978-C-A | ** | |||||||
4065964-C-A | 4197923-C-A | ** | |||||||
10759869-C-A | ** | ||||||||
13896974-C-A | 11776268-C-A | ** | |||||||
9996176-G-C | 10158567-G-C | ** | |||||||
17913073-C-A | 15801193-C-A | ** | |||||||
13489009-C-G | 11333333-C-G | ** | |||||||
13488992-T-G | 11333316-T-G | ** | |||||||
22623497-T-C | 20461611-T-C | ** | |||||||
5189297-C-A | 5321256-C-A | ** | |||||||
22639791-G-T | 20477905-G-T | ** | |||||||
10973630-T-C | ** | ||||||||
13196103-C-A | 11040427-C-A | ** | |||||||
4925237-C-A | 5057196-C-A | ** | |||||||
19043046-C-A | 16931166-C-A | ** | |||||||
10844635-CTCCAT-C | ** | ||||||||
22836702-C-A | 20674816-C-A | ** | |||||||
22982909-T-A | 20821023-T-A | ** | |||||||
9046939-G-T | 9209330-G-T | ** | |||||||
14367905-G-T | 12247201-G-T | ** | |||||||
10683439-C-A | ** | ||||||||
3152375-C-A | 3284334-C-A | ** | |||||||
23188292-C-A | 21026406-C-A | ** | |||||||
23465788-G-T | 21303902-G-T | ** | |||||||
19043065-C-A | 16931185-C-A | ** | |||||||
16070758-C-A | 13958878-C-A | ** | |||||||
23205356-C-A | 21043470-C-A | ** | |||||||
21329418-C-A | 19167532-C-A | *** | |||||||
56844939-C-A | *** | ||||||||
56837176-C-A | *** | ||||||||
22085493-A-T | 19923607-A-T | *** | |||||||
21895489-G-A | 19733603-G-A | *** | |||||||
21753631-C-A | *** | ||||||||
21211554-C-A | 19049668-C-A | *** | |||||||
13679892-A-G | 11524216-A-G | *** | |||||||
15864266-C-A | 13752386-C-A | *** | |||||||
22226371-G-A | 20064485-G-A | DYZ19 | *** | ||||||
25161130-G-A | 23014983-G-A | g1 | *** | ||||||
58976174-C-T | 56830027-C-T | *** | |||||||
13473794-C-T | 11318118-C-T | *** | |||||||
13473802-G-T | 11318126-G-T | F10799 | *** | ||||||
13647934-T-A | 11492258-T-A | *** | |||||||
22220316-T-A | 20058430-T-A | DYZ19 | *** | ||||||
22292274-C-T | 20130388-C-T | DYZ19 | *** | ||||||
13475382-C-A | 11319706-C-A | *** | |||||||
22314492-G-A | 20152606-G-A | DYZ19 | *** | ||||||
22353353-G-T | 20191467-G-T | DYZ19 | *** | ||||||
25024098-G-A | 22877951-G-A | g1 | *** | ||||||
25168029-C-G | 23021882-C-G | g1 | *** | ||||||
26220345-C-A | 24074198-C-A | P1_Y1 | *** | ||||||
22540050-CA-C | 20378164-CA-C | 10×A | *** | ||||||
13803204-A-T | 11682498-A-T | *** | |||||||
13845470-G-A | 11724764-G-A | Z12774 | *** | ||||||
11014359-T-C | *** | ||||||||
13828692-A-G | 11707986-A-G | *** | |||||||
28784822-G-A | 26638675-G-A | *** | |||||||
19739340-A-AAACAAC | 17627460-A-AAACAAC | P5_Prx | 13×AAC | *** | |||||
18222356-GA-G | 16110476-GA-G | 10×A | *** | ||||||
28784818-A-T | 26638671-A-T | *** | |||||||
28803842-A-T | 26657695-A-T | FGC9650 | *** | ||||||
28803783-T-G | 26657636-T-G | BY18 | *** | ||||||
14251935-TA-T | 12131229-TA-T | 10×A | *** | ||||||
16340147-G-A | 14228267-G-A | 22×A | *** | ||||||
13828761-G-A | 11708055-G-A | *** | |||||||
28784810-G-GAGTTT | 26638663-G-GAGTTT | *** | |||||||
23484492-C-A | 21322606-C-A | *** | *** | ||||||
18028760-ATACAG-A | 15916880-ATACAG-A | *** | |||||||
9979864-T-TA | 10142255-T-TA | *** | |||||||
14374977-CAG-C | 12254273-CAG-C | *** | |||||||
10869000-C-T | *** | ||||||||
11643714-G-T | *** | ||||||||
14916890-CAAAA-C,CAA | 12804957-CAAAA-C,CAA | 15×A | *** | ||||||
10796718-A-ATTCCG | *** | ||||||||
4902040-G-T | 5033999-G-T | *** | |||||||
8385298-C-T | 8517257-C-T | *** | |||||||
10024216-C-A | 10186607-C-A | *** | |||||||
10655082-T-C | *** | ||||||||
10667019-C-CA | *** | ||||||||
10667023-CC-A | *** | ||||||||
10818826-A-C | *** | ||||||||
3865902-A-G | 3997861-A-G | *** | |||||||
10981179-C-A | *** | ||||||||
11026074-A-G | *** | ||||||||
13474344-C-A | 11318668-C-A | *** | |||||||
13643156-C-A | 11487480-C-A | *** | |||||||
11668638-C-A | *** | ||||||||
14858569-A-G | 12746635-A-G | *** | |||||||
4179047-C-T | 4311006-C-T | *** | |||||||
3609908-C-A | 3741867-C-A | *** | |||||||
56834941-G-T | *** | ||||||||
17181588-G-T | 15069708-G-T | *** | |||||||
13258777-ATT-A | 11103101-ATT-A | 11×T | *** | ||||||
15605218-ATT-A | 13493338-ATT-A | 13×T | *** | ||||||
10775325-C-A | *** | ||||||||
10667034-C-A | *** | ||||||||
10667019-C-G | *** | ||||||||
21754302-G-T | *** | ||||||||
10845632-A-G | *** | ||||||||
10845649-T-G | *** | ||||||||
10845633-T-A | *** | ||||||||
14230227-G-T | 12109521-G-T | *** | |||||||
10935519-CTCCTT-C,CTCCAT | *** | ||||||||
11017980-C-A | *** | ||||||||
27127662-C-T | 24981515-C-T | P1_g3 | *** | ||||||
10746907-CA-C | *** | ||||||||
30641-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 497474 | 10813951 | 7849005 | 7934604 |
Kit: 497474 | 9866740 | 8008160 | 7886177 |
Used in age calculations | 10813951 | 8008160 | 7934604 |
Counts of SNPs | 10 | 9 |
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