Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > Z9 > Z30/S271 > Z349 > Z2 > Z7 > FGC910 > CTS10893 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
15839888-C-T 13728008-C-T YY+
8884607-C-T 9016566-C-T Z24865 Y+
6997226-T-A 7129185-T-A BY37186 YY+
7697810-G-A 7829769-G-A FGC39731 YY+
8000151-T-G 8132110-T-G FGC39732 YY+
8200540-A-G 8332499-A-G FGC39733 YY+
8426739-G-T 8558698-G-T FGC39734 YY+
8651465-A-T 8783424-A-T FGC39735 YY+
9146525-T-G 9308916-T-G FGC39736 Y+
14097672-T-A 11976966-T-A FGC39737 YY+
14429907-G-T 12309180-G-T FGC39738 YY+
16750275-G-A 14638395-G-A FGC39739 YY+
18383292-G-T 16271412-G-T FGC39740 P6_Gap +
19005702-G-A 16893822-G-A FGC39741 YY+
19345021-T-A 17233141-T-A BY35873 YY+
21512490-A-T 19350604-A-T FGC39742 YY+
22826764-T-C 20664878-T-C FGC39743 YY+
22942421-A-C 20780535-A-C FGC39744 YY+
23552335-C-T 21390449-C-T FGC39745 YY+
13141089-ATTCCGTTTTG-A 10630575-ATTCCGTTTTG-A **
16514373-C-A 14402493-C-A Z600 AM00205 AMM114 **
15489468-T-C 13377588-T-C **
16733716-C-A 14621836-C-A CTS6213 **
2803297-C-T 2935256-C-T Y1763 V1075 **
15323504-C-T 13211622-C-T M4806 CTS3997 **
17128586-G-A 15016706-G-A Z2168 CTS6829 **
28622721-C-T 26476574-C-T PF4791 CTS12578 **
4901975-C-A 5033934-C-A **
13809424-G-C 11688718-G-C **
15382752-G-C 13270872-G-C **
15382763-T-A 13270883-T-A **
16733577-G-T 14621697-G-T **
17463405-T-C 15351525-T-C **
20982706-T-TTA 18820820-T-TTA P4_Dst **
28583229-T-G 26437082-T-G **
13867985-C-G 11747279-C-G ***
13686885-A-G 11531209-A-G ***
13804755-T-A 11684049-T-A ***
27166686-GA-G 25020539-GA-G P1_g3 11×A***
13664262-T-A 11508586-T-A ***
13664263-G-T 11508587-G-T ***
13664278-A-C 11508602-A-C ***
13664291-C-A 11508615-C-A ***
13664293-G-C 11508617-G-C ***
13664306-A-C 11508630-A-C ***
13664323-G-C 11508647-G-C ***
13674358-T-C 11518682-T-C ***
13808084-A-T 11687378-A-T ***
26189760-GTT-G 24043613-GTT-G P1_Y1 21×T***
13684879-G-A 11529203-G-A FT448344 ***
22342884-C-T 20180998-C-T DYZ19 ***
13695650-T-G 11539974-T-G ***
26199611-ATGTG-A 24053464-ATGTG-A P1_Y1 17×TG***
27809465-T-C 25663318-T-C P1_Y2 ***
7453565-C-T 7585524-C-T IR1_L ***
25931592-G-GAAGA 23785445-G-GAAGA P1_Y1 14×AAGA***
13678436-T-A 11522760-T-A ***
13823163-GCATCC-G 11702457-GCATCC-G ***
13680945-C-G,T 11525269-C-G,T ***
13667205-T-C 11511529-T-C ***
13833481-T-C,G 11712775-T-C,G ***
13808130-A-G 11687424-A-G ***
13808140-G-C 11687434-G-C ***
58819372-C-A 56771499-G-T ***
7400573-T-TGA 7532532-T-TGA 12×GA***
13664511-C-G 11508835-C-G ***
13804736-T-C 11684030-T-C ***
13804737-G-A 11684031-G-A ***
13804749-ATTTAG-A 11684043-ATTTAG-A ***
13676711-G-C 11521035-G-C ***
13303600-G-A 11147924-G-A ***
13740768-AAATGG-A 11585092-AAATGG-A 4×AATGG***
14331142-T-C 12210436-T-C CTS2499 M4787 ***
22342883-T-G 20180997-T-G DYZ19 ***
26990078-T-TA 24843931-T-TA P1_r4 11×A***
13139304-CAGTTG-C 10628790-CAGTTG-C ***
13321919-G-A 11166243-G-A ***
13455090-C-T 11299414-C-T FTA2495 ***
13455112-T-A 11299436-T-A ***
13839633-T-C 11718927-T-C ***
27062945-GGTA-G 24916798-GGTA-G P1_r4 11×GTA***
27368948-GA-G 25222801-GA-G P1_g3 11×A***
13838901-G-A 11718195-G-A ***
13664539-G-T 11508863-G-T ***
13664553-G-T 11508877-G-T ***
13676616-G-C 11520940-G-C ***
13457417-CTTTCG-C 11301741-CTTTCG-C ***
16108711-C-T 13996831-C-T P8_Prx ***
20632502-GA-G 18470616-GA-G P4_Prx 11×A***
16108713-T-C 13996833-T-C P8_Prx ***
16108716-C-T 13996836-C-T P8_Prx ***
22297465-C-T 20135579-C-T DYZ19 ***
13139416-T-A 10628902-T-A ***
13139429-A-C 10628915-A-C ***
13664544-G-A 11508868-G-A ***
58975953-C-A 56829806-C-A ***
25657077-AT-A 23510930-AT-A P1_b3 12×T***
27968354-CT-C 25822207-CT-C P1_Y2 14×T***
13674366-T-C 11518690-T-C ***
25953249-C-A 23807102-C-A P1_Y1 ***
15810991-G-C 13699111-G-C ***
24749662-A-G 22603515-A-G FGC61358 P3_b2 ***
13808060-G-A 11687354-G-A ***
58975958-T-A 56829811-T-A ***
18479588-GA-G 16367708-GA-G P6_Dst 11×A***
25426962-AT-A 23280815-AT-A P2_r2 10×T***
25652602-CT-C 23506455-CT-C P1_b3 11×T***
27198886-CA-C 25052739-CA-C P1_g3 11×A***
13833838-C-A 11713132-C-A ***
58975955-C-G 56829808-C-G ***
58975963-C-T 56829816-C-T ***
23311265-T-A 21149379-T-A ***
28143480-CT-C 25997333-CT-C P1_b4 10×T***
13834026-A-G 11713320-A-G ***
27809490-C-T 25663343-C-T P1_Y2 ***
27809494-C-T 25663347-C-T P1_Y2 ***
27809502-T-A 25663355-T-A P1_Y2 ***
58974072-A-T 56827925-A-T ***
58827223-G-T 56763648-C-A ***
13703520-C-G 11547844-C-G ***
22223591-A-T 20061705-A-T DYZ19 ***
22505108-T-G 20343222-T-G DYZ19 ***
24783533-AT-A 22637386-AT-A P3_b2 9×T***
24773507-AGG-A 22627360-AGG-A P3_b2 ***
22223603-A-C 20061717-A-C DYZ19 ***
24819805-A-T 22673658-A-T P3_b2 ***
27809505-C-T 25663358-C-T P1_Y2 ***
13839623-A-G 11718917-A-G ***
13472796-G-T 11317120-G-T ***
15811002-C-T 13699122-C-T PR5662 FT111480 ***
22223545-C-A 20061659-C-A DYZ19 ***
22505779-T-G 20343893-T-G BY225134 DYZ19 ***
22272473-C-G 20110587-C-G BY51666 DYZ19 ***
16136069-AT-A 14024189-AT-A P8_Dst 15×T***
27239670-CCT-C 25093523-CCT-C P1_g3 ***
20489602-ATT-A 18327716-ATT-A P5_Dst ***
13833375-TG-A,AG 11712669-TG-A,AG ***
13140125-G-A,C 10629611-G-A,C 6×CACTC***
13846570-C-G,T 11725864-C-G,T ***
13140963-T-A,TC 10630449-T-A,TC ***
10013148-G-A,T 10175539-G-A,T ***
22310602-C-G 20148716-C-G DYZ19 ***
27214310-C-CT 25068163-C-CT P1_g3 10×T***
6331512-G-A 6463471-G-A IR3_Dst ***
9207198-GA-G 9369589-GA-G 10×A***
9318182-C-A 9480573-C-A ***
10020897-CT-C 10183288-CT-C ***
13142916-T-C 10632402-T-C ***
13455079-C-T 11299403-C-T ***
13455080-C-G 11299404-C-G ***
13455129-C-T 11299453-C-T ***
13455469-G-C 11299793-G-C ***
13483451-A-T 11327775-A-T ***
13494176-A-C,G 11338500-A-C,G ***
13600281-A-C 11444605-A-C BY86644 ***
13667237-G-A 11511561-G-A ***
13667262-G-A 11511586-G-A BY87663 ***
13716083-A-T 11560407-A-T ***
13805320-T-A 11684614-T-A ***
13808153-A-C 11687447-A-C ***
13826052-GAATGGACTAT-G 11705346-GAATGGACTAT-G ***
13834028-T-A 11713322-T-A 7×ATGGA***
13834101-A-G 11713395-A-G ***
13839605-G-C 11718899-G-C ***
13846303-T-A 11725597-T-A ***
13869052-C-A,G 11748346-C-A,G ***
15426344-C-G 13314464-C-G ***
15811027-C-G 13699147-C-G PR5664 ***
18319790-A-G 16207910-A-G P6_Prx ***
20661468-A-AAT 18499582-A-AAT P4_Prx ***
20736524-C-T 18574638-C-T P4_Prx ***
22223134-G-T 20061248-G-T DYZ19 ***
22271069-T-C 20109183-T-C DYZ19 ***
22272494-T-G 20110608-T-G BY27254 DYZ19 ***
22291251-G-A 20129365-G-A DYZ19 ***
22301845-A-C 20139959-A-C FT455517 DYZ19 ***
22339485-C-A 20177599-C-A DYZ19 ***
22365177-T-C 20203291-T-C DYZ19 ***
22426924-A-G 20265038-A-G DYZ19 ***
22446496-G-A 20284610-G-A DYZ19 ***
22505777-CT-C 20343891-CT-C DYZ19 ***
24247410-TACAC-T 22101263-TACAC-T P3_b1 12×AC***
24759685-T-G 22613538-T-G P3_b2 ***
24759686-G-A 22613539-G-A P3_b2 ***
24847255-CAAAGCA-C 22701108-CAAAGCA-C IR1_R ***
25174575-C-G 23028428-C-G FGC80570 g1 ***
25378568-CTGACTTTCA-G 23232421-CTGACTTTCA-G P2_r2 ***
25378580-A-T 23232433-A-T P2_r2 ***
25394524-C-T 23248377-C-T P2_r2 ***
26166931-C-T 24020784-C-T P1_Y1 ***
26318192-T-A 24172045-T-A P1_Y1 ***
26361580-C-A 24215433-C-A P1_Y1 ***
27172054-A-AG 25025907-A-AG P1_g3 ***
58977193-C-G 56831046-C-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.