Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > Z251/S470 > S11556 > S9294 > BY3229 > BY3231 > BY43237 > FGC11986 > FGC11975 > FGC11976 > FGC11978

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
ZLHF1
3268337-G-A 3400296-G-A FGC11964 +
3570475-C-T 3702434-C-T FGC11965 +
3852523-T-G 3984482-T-G FGC11966 +
4448335-C-T 4580294-C-T FGC11968 +
4735283-G-T 4867242-G-T FGC11969 +
4877888-G-A 5009847-G-A FGC11970 +
4965592-G-A 5097551-G-A FGC11971 +
5998971-T-G 6130930-T-G FGC11973 +
6508070-C-A 6640029-C-A FGC11974 +
7213450-G-C 7345409-G-C FGC11977 YY+
15987612-G-T 13875732-G-T FGC11987 Y+
16445964-C-A 14334084-C-A FGC11993 YY+
17674641-G-T 15562761-G-T FGC11996 YY+
17693747-C-T 15581867-C-T FGC11997 YY+
23966377-T-G 21820230-T-G FGC13591 Y+
24376957-G-C 22230810-G-C FGC13592 Y+
24452366-A-T 22306219-A-T FGC13593 Y+
28645276-G-T 26499129-G-T FGC13594 +
16708209-AG-A 14596329-AG-A FGC12003 +
18541060-G-A 16429180-G-A FGC13577 Y*
3161901-T-C 3293860-T-C FGC11963 *
4236844-C-T 4368803-C-T FGC11967 *
5209481-T-A 5341440-T-A FGC11972 *
17062553-A-C 14950673-A-C FGC11995 Y*
18143699-C-T 16031819-C-T FGC11999 YY*
18971497-G-A 16859617-G-A FGC13580 Y*
22666167-C-T 20504281-C-T FGC13587 Y*
22351262-G-A 20189376-G-A DYZ19 **
17998511-C-G 15886631-C-G P7_Gap **
22351269-G-T 20189383-G-T DYZ19 **
9428920-C-T 9591311-C-T **
3394344-T-C 3526303-T-C **
8065504-G-C 8197463-G-C **
8972629-T-A 9135020-T-A **
9428929-A-G 9591320-A-G **
9428969-C-A 9591360-C-A **
9428980-A-G 9591371-A-G **
9428996-C-T 9591387-C-T **
9524048-T-C 9686439-T-C **
9524052-T-C 9686443-T-C **
14111435-A-T 11990729-A-T **
24386316-C-A 22240169-C-A **
2915006-TCTTCCTTCCTTCCTTC-T 3046965-TCTTCCTTCCTTCCTTC-T 10×CTTC**
9700780-C-CAAAAAA 9863171-C-CAAAAAA IR3_Prx 23×A**
14263528-T-TAATA 12142822-T-TAATA 6×AATA**
20569614-C-CAAAAAAAAAAA 18407728-C-CAAAAAAAAAAA P5_Dst 33×A**
9940864-A-AAT 10103255-A-AAT ***
13701783-C-A 11546107-C-A ***
22503694-G-A 20341808-G-A FGC83097 DYZ19 ***
58866391-A-T 56724480-T-A ***
22365994-G-T 20204108-G-T DYZ19 ***
22232108-G-A 20070222-G-A DYZ19 ***
22232165-C-A 20070279-C-A DYZ19 ***
22289737-G-C 20127851-G-C DYZ19 ***
22289799-C-A 20127913-C-A DYZ19 ***
22488502-T-A 20326616-T-A DYZ19 ***
58843537-T-G 56747334-A-C ***
23037237-A-ATTTT 20875351-A-ATTTT 20×T***
58840559-TC-T 56750309-CG-C ***
22268357-G-T 20106471-G-T DYZ19 ***
22309435-T-C 20147549-T-C DYZ19 ***
22268352-C-A 20106466-C-A DYZ19 ***
58893231-G-C 56697640-C-G ***
13745078-AC-TG 11589402-AC-TG ***
22365977-GGTGGCAGCA-TGTTACATAG 20204091-GGTGGCAGCA-TGTTACATAG DYZ19 ***
19937298-A-C 17825418-A-C P5_Prx ***
20522734-G-C 18360848-G-C P5_Dst ***
20522800-T-G 18360914-T-G P5_Dst ***
20522853-A-C 18360967-A-C P5_Dst ***
22232111-C-G 20070225-C-G DYZ19 ***
22332806-G-A 20170920-G-A DYZ19 ***
22332808-T-A 20170922-T-A DYZ19 ***
22332813-C-A 20170927-C-A DYZ19 ***
22342588-T-G 20180702-T-G DYZ19 ***
22365984-G-T 20204098-G-T DYZ19 ***
22365985-C-A 20204099-C-A DYZ19 ***
22365986-A-G 20204100-A-G DYZ19 ***
58875054-C-G 56715817-G-C ***
22252974-A-AC 20091088-A-AC DYZ19 ***
22268383-T-A 20106497-T-A DYZ19 ***
28802753-T-G 26656606-T-G ***
22359867-T-G 20197981-T-G DYZ19 ***
22365597-T-G 20203711-T-G DYZ19 ***
22367193-C-T 20205307-C-T DYZ19 ***
22367204-A-G 20205318-A-G DYZ19 ***
22367219-C-G 20205333-C-G DYZ19 ***
22481030-A-C 20319144-A-C DYZ19 ***
58874519-T-C 56716352-A-G ***
13463838-TTT-GGC 11308162-TTT-GGC ***
22480958-G-C 20319072-G-C DYZ19 ***
58843740-A-T 56747131-T-A ***
58865710-A-T 56725161-T-A ***
58913099-G-T 56677772-C-A ***
22236528-TA-AT 20074642-TA-AT DYZ19 ***
58895124-TG-AT 56695746-CA-AT ***
18688521-C-AAA 16576641-C-AAA ***
25323141-T-C 23176994-T-C FGC474 P2_r1 ***
22234368-T-G 20072482-T-G Z3453 DYZ19 ***
22360693-T-A 20198807-T-A DYZ19 ***
58900034-A-G 56690837-T-C ***
13484778-CA-TC 11329102-CA-TC ***
4067508-C-CTTT 4199467-C-CTTT 29×T***
58846432-TTCCATTCCATTCAAA-T 56744414-CTGGAATGGATTTGAA-C ***
58981977-TTCCACTCCAGTCCACTC-T 56835830-TTCCACTCCAGTCCACTC-T ***
22343321-A-T 20181435-A-T DYZ19 ***
22342557-A-C 20180671-A-C DYZ19 ***
22342558-T-C 20180672-T-C DYZ19 ***
22342562-G-C 20180676-G-C DYZ19 ***
22342731-G-C 20180845-G-C DYZ19 ***
22420853-T-G 20258967-T-G DYZ19 ***
22420867-T-A 20258981-T-A DYZ19 ***
22420878-A-G 20258992-A-G DYZ19 ***
7128621-CGTGTGT-C 7260580-CGTGTGT-C 23×GT***
22236782-CGA-TGG 20074896-CGA-TGG DYZ19 ***
22496118-T-G 20334232-T-G DYZ19 ***
13474819-CCCCCA-TCTCCAG 11319143-CCCCCA-TCTCCAG ***
19025727-CGG-TGT 16913847-CGG-TGT ***
19025741-CAAG-GAAA 16913861-CAAG-GAAA ***
28802746-TTCAAATTGCATA-ATGGAATGGAAAG 26656599-TTCAAATTGCATA-ATGGAATGGAAAG ***
58848953-T-C 56741918-A-G ***
22354388-A-G 20192502-A-G DYZ19 ***
10029466-T-G 10191857-T-G ***
22273615-A-C 20111729-A-C DYZ19 ***
17477484-G-A 15365604-G-A 14×A***
3313978-G-A 3445937-G-A ***
13311727-T-G 11156051-T-G ***
7359788-T-A 7491747-T-A ***
13257061-C-T 11101385-C-T ***
22352931-A-T 20191045-A-T DYZ19 ***
58836578-T-A 56754293-A-T ***
13389874-C-T 11234198-C-T ***
58910787-T-C 56680084-A-G ***
28804549-A-G 26658402-A-G ***
13486189-T-G 11330513-T-G ***
22257132-T-C 20095246-T-C DYZ19 ***
22354254-T-A 20192368-T-A DYZ19 ***
28802755-C-A 26656608-C-A ***
22354362-C-A 20192476-C-A DYZ19 ***
58916131-G-C 56674740-C-G ***
22273590-A-G 20111704-A-G DYZ19 ***
3313944-C-A 3445903-C-A ***
2772424-A-G 2904383-A-G ***
2792306-G-A 2924265-G-A ***
3446562-T-C 3578521-T-C ***
3458642-C-A 3590601-C-A ***
3588113-T-C 3720072-T-C ***
3588118-A-T 3720077-A-T ***
3588120-A-T 3720079-A-T ***
3588122-A-C 3720081-A-C ***
3588133-T-A 3720092-T-A ***
3681456-C-T 3813415-C-T FT113052 ***
4289188-G-A 4421147-G-A ***
4379453-G-T 4511412-G-T ***
4622346-A-C 4754305-A-C ***
4622397-C-T 4754356-C-T ***
4753539-C-A 4885498-C-A ***
4846079-A-T 4978038-A-T ***
4848357-T-A 4980316-T-A ***
5738452-A-G 5870411-A-G ***
6131149-C-T 6263108-C-T ***
6131161-A-C 6263120-A-C ***
6212502-T-G 6344461-T-G IR3_Dst ***
6212524-A-G 6344483-A-G IR3_Dst ***
6212531-G-A 6344490-G-A IR3_Dst ***
6247590-A-T 6379549-A-T IR3_Dst ***
6247618-A-C 6379577-A-C IR3_Dst ***
6303486-G-T 6435445-G-T IR3_Dst ***
6303519-C-T 6435478-C-T IR3_Dst ***
6308038-A-T 6439997-A-T IR3_Dst ***
6346112-A-T 6478071-A-T ***
6684237-C-A 6816196-C-A ***
6720950-C-T 6852909-C-T FTB69966 ***
6720960-A-C 6852919-A-C ***
7027128-G-A 7159087-G-A ***
7076519-A-G 7208478-A-G ***
7483026-A-T 7614985-A-T IR1_L 29×T***
8901090-T-C 9033049-T-C ***
8972442-C-A 9134833-C-A ***
8972605-T-C 9134996-T-C ***
8972661-A-G 9135052-A-G ***
9171247-C-A 9333638-C-A ***
9227356-A-G 9389747-A-G ***
9227358-C-T 9389749-C-T ***
10066976-A-C 10229367-A-C ***
10066995-A-T 10229386-A-T ***
10067004-C-A 10229395-C-A ***
10067020-A-T 10229411-A-T ***
10102438-C-A 10264829-C-A ***
10102448-A-T 10264839-A-T ***
10102461-A-G 10264852-A-G ***
10102464-C-G 10264855-C-G ***
13223537-A-C 11067861-A-C ***
13254467-C-T 11098791-C-T ***
13377396-G-T 11221720-G-T ***
13440140-C-A 11284464-C-A ***
13440172-C-A 11284496-C-A ***
13460127-C-G 11304451-C-G ***
13463087-C-A 11307411-C-A ***
13465222-G-T 11309546-G-T ***
13479047-G-C 11323371-G-C ***
13484531-A-T 11328855-A-T ***
13697703-G-A 11542027-G-A ***
13699820-A-G 11544144-A-G ***
13701136-A-T 11545460-A-T ***
13701162-T-A 11545486-T-A ***
13701163-C-G 11545487-C-G ***
13701814-A-C 11546138-A-C ***
13708790-G-T 11553114-G-T ***
13708803-T-A 11553127-T-A ***
13721549-T-A 11565873-T-A ***
13721572-A-C 11565896-A-C ***
13728227-C-A 11572551-C-A ***
13876507-A-C 11755801-A-C ***
14165885-C-A 12045179-C-A ***
14505509-G-A 12393714-G-A ***
15883548-T-C 13771668-T-C ***
15958198-T-G 13846318-T-G ***
16157729-A-T 14045849-A-T P8_Dst ***
16157731-A-T 14045851-A-T P8_Dst ***
16397069-A-C 14285189-A-C ***
16399728-T-A 14287848-T-A ***
17070499-T-C 14958619-T-C ***
17998520-G-A 15886640-G-A P7_Gap ***
18231665-C-T 16119785-C-T ***
18271881-G-C 16160001-G-C P6_Prx ***
18289624-T-C 16177744-T-C P6_Prx ***
18437332-A-T 16325452-A-T P6_Dst ***
18437353-C-T 16325473-C-T P6_Dst ***
18518382-C-A 16406502-C-A P6_Dst ***
19029936-G-A 16918056-G-A ***
19377460-A-G 17265580-A-G ***
19578997-T-A 17467117-T-A P5_Prx ***
19579012-T-G 17467132-T-G P5_Prx ***
19579015-T-G 17467135-T-G P5_Prx ***
19579034-T-G 17467154-T-G P5_Prx ***
19579036-T-G 17467156-T-G P5_Prx ***
19605280-A-G 17493400-A-G P5_Prx ***
19846615-C-G 17734735-C-G P5_Prx ***
19846627-G-A 17734747-G-A P5_Prx ***
19846635-C-A 17734755-C-A P5_Prx ***
19903448-C-A 17791568-C-A P5_Prx ***
19919771-C-G 17807891-C-G P5_Prx ***
19919780-C-G 17807900-C-G P5_Prx ***
19919781-T-G 17807901-T-G P5_Prx ***
19919787-C-A 17807907-C-A P5_Prx ***
19919797-C-A 17807917-C-A P5_Prx ***
19919801-T-A 17807921-T-A P5_Prx ***
19919803-T-A 17807923-T-A P5_Prx ***
19919804-T-A 17807924-T-A P5_Prx ***
19919812-T-A 17807932-T-A P5_Prx ***
19919813-C-A 17807933-C-A P5_Prx ***
19919824-G-T 17807944-G-T P5_Prx ***
19955788-C-T 17843908-C-T P5_Prx ***
19955791-A-T 17843911-A-T P5_Prx ***
19955792-G-T 17843912-G-T P5_Prx ***
19955796-G-A 17843916-G-A P5_Prx ***
19955797-T-A 17843917-T-A P5_Prx ***
19955821-G-T 17843941-G-T P5_Prx ***
20000899-T-C 17889019-T-C P5_Prx ***
20017324-C-A 17905444-C-A P5_Prx ***
20285022-A-T 18123136-A-T P5_Dst ***
20405204-G-A 18243318-G-A P5_Dst ***
20405224-A-T 18243338-A-T P5_Dst ***
20405228-A-C 18243342-A-C P5_Dst ***
20405229-A-T 18243343-A-T P5_Dst ***
20405233-C-T 18243347-C-T P5_Dst ***
20470601-T-C 18308715-T-C P5_Dst ***
20475849-T-A 18313963-T-A P5_Dst ***
20475859-T-A 18313973-T-A P5_Dst ***
20475864-A-T 18313978-A-T P5_Dst ***
20475871-C-A 18313985-C-A P5_Dst ***
20475874-G-A 18313988-G-A P5_Dst ***
20475880-C-T 18313994-C-T P5_Dst ***
20475881-G-T 18313995-G-T P5_Dst ***
20475885-C-T 18313999-C-T P5_Dst ***
20475895-A-C 18314009-A-C P5_Dst ***
20475944-C-T 18314058-C-T P5_Dst ***
20476065-C-A 18314179-C-A P5_Dst ***
20522687-C-G 18360801-C-G P5_Dst ***
20522765-A-C 18360879-A-C P5_Dst ***
20522766-T-C 18360880-T-C P5_Dst ***
20693775-G-A 18531889-G-A P4_Prx ***
20693800-G-T 18531914-G-T P4_Prx ***
20693810-A-T 18531924-A-T P4_Prx ***
20693820-T-C 18531934-T-C P4_Prx ***
21012719-G-A 18850833-G-A P4_Dst ***
21012728-T-A 18850842-T-A P4_Dst ***
21012729-G-A 18850843-G-A P4_Dst ***
21012733-G-A 18850847-G-A P4_Dst ***
21012752-C-A 18850866-C-A P4_Dst ***
21012755-T-G 18850869-T-G P4_Dst ***
21012757-T-G 18850871-T-G P4_Dst ***
21023258-T-A 18861372-T-A P4_Dst ***
21023266-T-A 18861380-T-A P4_Dst ***
21023272-G-A 18861386-G-A P4_Dst ***
21023273-G-A 18861387-G-A P4_Dst ***
21829978-C-T 19668092-C-T ***
22017828-T-C 19855942-T-C ***
22223504-T-G 20061618-T-G DYZ19 ***
22241438-G-C 20079552-G-C DYZ19 ***
22241445-A-G 20079559-A-G DYZ19 ***
22241447-G-A 20079561-G-A BY25173 DYZ19 ***
22244985-A-C 20083099-A-C DYZ19 ***
22250043-T-C 20088157-T-C DYZ19 ***
22250056-G-C 20088170-G-C DYZ19 ***
22250063-A-G 20088177-A-G DYZ19 ***
22252925-C-G 20091039-C-G DYZ19 ***
22252928-T-C 20091042-T-C DYZ19 ***
22266000-T-C 20104114-T-C DYZ19 ***
22273619-G-A 20111733-G-A DYZ19 ***
22282019-G-A 20120133-G-A DYZ19 ***
22292609-G-A 20130723-G-A DYZ19 ***
22309439-T-G 20147553-T-G DYZ19 ***
22324958-T-A 20163072-T-A DYZ19 ***
22332785-G-A 20170899-G-A DYZ19 ***
22332791-G-T 20170905-G-T DYZ19 ***
22332797-G-A 20170911-G-A DYZ19 ***
22332809-G-A 20170923-G-A DYZ19 ***
22332816-C-G 20170930-C-G DYZ19 ***
22332821-G-C 20170935-G-C DYZ19 ***
22341680-C-T 20179794-C-T DYZ19 ***
22354410-A-T 20192524-A-T DYZ19 ***
22355074-C-A 20193188-C-A DYZ19 ***
22364709-G-A 20202823-G-A FT70435 DYZ19 ***
22365608-A-T 20203722-A-T DYZ19 ***
22365615-A-T 20203729-A-T DYZ19 ***
22420860-T-A 20258974-T-A DYZ19 ***
22420863-A-C 20258977-A-C DYZ19 ***
22420864-T-A 20258978-T-A DYZ19 ***
22420880-A-G 20258994-A-G DYZ19 ***
22421434-C-A 20259548-C-A DYZ19 ***
22421478-G-C 20259592-G-C DYZ19 ***
22421494-G-A 20259608-G-A DYZ19 ***
22421536-C-T 20259650-C-T DYZ19 ***
22433038-G-T 20271152-G-T DYZ19 ***
22456984-T-G 20295098-T-G DYZ19 ***
22457006-T-C 20295120-T-C DYZ19 ***
22457013-A-G 20295127-A-G DYZ19 ***
22457025-T-A 20295139-T-A DYZ19 ***
22481870-T-C 20319984-T-C DYZ19 ***
22490068-A-C 20328182-A-C DYZ19 ***
22490141-T-A 20328255-T-A DYZ19 ***
22490996-T-A 20329110-T-A DYZ19 ***
22491021-C-G 20329135-C-G DYZ19 ***
22496051-G-T 20334165-G-T DYZ19 ***
22496061-C-A 20334175-C-A DYZ19 ***
22503653-G-C 20341767-G-C DYZ19 ***
22503723-C-A 20341837-C-A DYZ19 ***
22503730-G-C 20341844-G-C DYZ19 ***
22503752-C-A 20341866-C-A DYZ19 ***
22505054-T-G 20343168-T-G DYZ19 ***
23832829-C-T 21670943-C-T ***
24528698-A-G 22382551-A-G P3_t2 ***
24528700-T-G 22382553-T-G P3_t2 ***
24528723-T-A 22382576-T-A P3_t2 ***
24643528-C-A 22497381-C-A P3_t2 ***
24836738-A-G 22690591-A-G P3_b2 ***
24841185-A-T 22695038-A-T IR1_R ***
24841201-A-G 22695054-A-G IR1_R ***
24841207-C-A 22695060-C-A IR1_R ***
24841208-T-A 22695061-T-A IR1_R ***
24841209-G-A 22695062-G-A IR1_R ***
24841210-T-A 22695063-T-A IR1_R ***
24841212-T-A 22695065-T-A IR1_R ***
24841218-T-A 22695071-T-A IR1_R ***
24869054-G-T 22722907-G-T IR1_R ***
25246436-C-T 23100289-C-T P2_r1 ***
25317868-T-A 23171721-T-A P2_r1 ***
25351454-C-G 23205307-C-G P2_r1 ***
25351456-C-G 23205309-C-G P2_r1 ***
25899493-T-A 23753346-T-A P1_Y1 ***
25964151-G-A 23818004-G-A P1_Y1 ***
26210675-T-G 24064528-T-G P1_Y1 ***
26499905-G-A 24353758-G-A P1_Y1 ***
26504037-G-A 24357890-G-A P1_Y1 ***
26504039-T-C 24357892-T-C P1_Y1 ***
26504043-C-T 24357896-C-T P1_Y1 ***
26504049-C-T 24357902-C-T P1_Y1 ***
26508346-C-T 24362199-C-T P1_Y1 ***
26521839-G-T 24375692-G-T P1_Y1 ***
26628335-A-G 24482188-A-G P1_g2 ***
27025646-G-T 24879499-G-T P1_r4 ***
27141648-C-T 24995501-C-T P1_g3 ***
27141667-G-T 24995520-G-T P1_g3 ***
27141669-G-T 24995522-G-T P1_g3 ***
27197134-G-A 25050987-G-A P1_g3 ***
27197135-T-G 25050988-T-G P1_g3 ***
27197142-C-G 25050995-C-G P1_g3 ***
27197144-C-T 25050997-C-T P1_g3 ***
27197147-C-G 25051000-C-G P1_g3 ***
27197162-C-A 25051015-C-A P1_g3 ***
27259056-G-A 25112909-G-A P1_g3 ***
27259079-G-T 25112932-G-T P1_g3 ***
27259101-T-A 25112954-T-A P1_g3 ***
27337979-G-T 25191832-G-T P1_g3 ***
27423537-A-T 25277390-A-T P1_g3 ***
27488075-G-A 25341928-G-A P1_Y2 ***
27488077-C-T 25341930-C-T P1_Y2 ***
27525238-G-T 25379091-G-T P1_Y2 ***
27554717-G-T 25408570-G-T P1_Y2 ***
27554733-G-T 25408586-G-T P1_Y2 ***
27804884-A-G 25658737-A-G P1_Y2 ***
27804895-T-G 25658748-T-G P1_Y2 ***
27804896-A-G 25658749-A-G P1_Y2 ***
27804897-A-G 25658750-A-G P1_Y2 ***
27804902-T-G 25658755-T-G P1_Y2 ***
27804903-A-G 25658756-A-G P1_Y2 ***
27804906-C-G 25658759-C-G P1_Y2 ***
27804910-A-G 25658763-A-G P1_Y2 ***
27804924-A-G 25658777-A-G P1_Y2 ***
27804925-A-G 25658778-A-G P1_Y2 ***
27804931-A-G 25658784-A-G P1_Y2 ***
27804933-C-G 25658786-C-G P1_Y2 ***
27887057-T-A 25740910-T-A P1_Y2 ***
27887063-A-C 25740916-A-C P1_Y2 ***
27887065-G-C 25740918-G-C P1_Y2 ***
27887070-G-C 25740923-G-C P1_Y2 ***
28371209-T-A 26225062-T-A P1_gr2 ***
28371210-A-G 26225063-A-G P1_gr2 ***
28371211-T-A 26225064-T-A P1_gr2 ***
28371216-C-G 26225069-C-G P1_gr2 ***
28371271-G-T 26225124-G-T P1_gr2 ***
28454742-C-A 26308595-C-A P1_gr2 ***
28454746-A-T 26308599-A-T P1_gr2 ***
28454748-A-T 26308601-A-T P1_gr2 ***
28454749-A-T 26308602-A-T P1_gr2 ***
28454752-C-T 26308605-C-T P1_gr2 ***
28454754-C-T 26308607-C-T P1_gr2 ***
28454756-G-T 26308609-G-T P1_gr2 ***
28454758-A-T 26308611-A-T P1_gr2 ***
28454771-C-T 26308624-C-T P1_gr2 ***
28454775-A-C 26308628-A-C P1_gr2 ***
28454778-T-C 26308631-T-C P1_gr2 ***
28454780-G-A 26308633-G-A P1_gr2 ***
28797025-G-A 26650878-G-A ***
28818990-G-T 26672843-G-T ***
28818995-T-G 26672848-T-G ***
28819005-A-G 26672858-A-G ***
58823387-A-T 56767484-T-A ***
58825115-T-C 56765756-A-G ***
58832975-C-A 56757896-G-T ***
58836568-T-G 56754303-A-C ***
58836571-C-T 56754300-G-A ***
58836574-T-A 56754297-A-T ***
58836575-T-G 56754296-A-C ***
58838799-C-T 56752072-G-A ***
58838811-T-A 56752060-A-T ***
58840537-A-G 56750334-T-C ***
58841165-C-T 56749706-G-A ***
58843728-T-G 56747143-A-C ***
58844401-C-T 56746470-G-A ***
58844403-T-G 56746468-A-C ***
58844405-A-T 56746466-T-A ***
58844414-G-T 56746457-C-A ***
58844423-T-G 56746448-A-C ***
58844433-T-A 56746438-A-T ***
58844436-G-C 56746435-C-G ***
58844438-T-C 56746433-A-G ***
58844440-G-C 56746431-C-G ***
58844445-A-T 56746426-T-A ***
58844452-T-A 56746419-A-T ***
58844455-T-C 56746416-A-G ***
58844620-C-A 56746251-G-T ***
58844623-T-C 56746248-A-G ***
58844626-C-G 56746245-G-C ***
58844631-C-A 56746240-G-T ***
58846120-T-A 56744751-A-T ***
58846123-C-T 56744748-G-A ***
58846141-C-T 56744730-G-A ***
58846156-C-T 56744715-G-A ***
58846159-C-A 56744712-G-T ***
58846165-C-A 56744706-G-T ***
58852107-T-C 56738764-A-G ***
58854277-C-T 56736594-G-A ***
58858623-T-A 56732248-A-T ***
58858625-C-A 56732246-G-T ***
58858635-T-C 56732236-A-G ***
58858652-A-C 56732219-T-G ***
58861740-T-G 56729131-A-C ***
58861774-T-C 56729097-A-G ***
58862488-G-C 56728383-C-G 4×CATTC***
58865709-A-T 56725162-T-A ***
58866387-C-G 56724484-G-C ***
58866390-T-C 56724481-A-G ***
58866403-C-A 56724468-G-T ***
58866413-C-T 56724458-G-A ***
58866414-A-T 56724457-T-A ***
58866419-A-T 56724452-T-A ***
58866426-G-T 56724445-C-A ***
58866428-C-A 56724443-G-T ***
58866441-G-T 56724430-C-A ***
58868531-C-G 56722340-G-C ***
58874436-T-C 56716435-A-G ***
58874455-A-T 56716416-T-A ***
58874506-A-G 56716365-T-C ***
58877000-A-G 56713871-T-C ***
58877009-T-C 56713862-A-G ***
58877019-C-G 56713852-G-C ***
58877030-A-T 56713841-T-A ***
58879609-C-T 56711262-G-A ***
58881428-A-T 56709443-T-A ***
58881433-A-T 56709438-T-A ***
58882027-G-C 56708844-C-G ***
58883932-A-C 56706939-T-G ***
58890738-C-G 56700133-G-C ***
58892114-G-C 56698757-C-G ***
58892120-T-A 56698751-A-T ***
58895329-C-G 56695542-G-C ***
58903436-G-A 56687435-C-T ***
58908797-G-A 56682074-C-T ***
58910390-G-A 56680481-C-T ***
58910392-C-A 56680479-G-T ***
58910394-A-T 56680477-T-A ***
58910409-A-G 56680462-T-C ***
58910410-G-T 56680461-C-A ***
58910415-T-G 56680456-A-C ***
58910420-C-T 56680451-G-A ***
58910883-C-T 56679988-G-A ***
58913111-T-G 56677760-A-C ***
58913122-C-G 56677749-G-C ***
58913127-C-G 56677744-G-C ***
58913132-G-C 56677739-C-G ***
58913141-A-T 56677730-T-A ***
58913145-G-A 56677726-C-T ***
58913146-T-A 56677725-A-T ***
13930192-AG-A 11809486-AG-A ***
10029452-C-CA 10191843-C-CA ***
8184333-CTCTGAATGTTATAAACA-C 8316292-CTCTGAATGTTATAAACA-C ***
19411914-A-AAAG 17300034-A-AAAG 14×AAAG***
14845447-A-ATAT 12733513-A-ATAT 6×TAT***
58868694-T-TTCCAA 56722172-A-ATGGAT ***
17275757-AA-GG 15163877-AA-GG ***
5904031-C-CAAAA 6035990-C-CAAAA 27×A***
6117070-C-CTG 6249029-C-CTG 8×TG***
8901078-TATATATATATAT-C 9033037-TATATATATATAT-C ***
8901076-CATATATATATAT-C 9033035-CATATATATATAT-C 15×AT***
8972498-GGCAT-AGCAG 9134889-GGCAT-AGCAG ***
9524044-TATATATAT-CACACATAC 9686435-TATATATAT-CACACATAC ***
9735605-G-GTTTT 9897996-G-GTTTT IR3_Prx 30×T***
9930025-AC-GG 10092416-AC-GG ***
9942043-A-ATTTTTTTTT 10104434-A-ATTTTTTTTT 28×T***
9956269-CATC-AATT 10118660-CATC-AATT ***
10004846-CTTGTGTGTGTGTGTGTGTGTGCGTG-AT 10167237-CTTGTGTGTGTGTGTGTGTGTGCGTG-AT ***
10004847-TTGTGTGTGTGTGTGTGTGTGCGTG-T 10167238-TTGTGTGTGTGTGTGTGTGTGCGTG-T 10×TG***
10019059-AAGGGGGTA-GTGGTGGTG 10181450-AAGGGGGTA-GTGGTGGTG ***
10066956-CAAAACTGTCC-GAAAGCTG 10229347-CAAAACTGTCC-GAAAGCTG ***
10066969-C-CTA 10229360-C-CTA ***
10067069-CAGGA-TAGGC 10229460-CAGGA-TAGGC ***
13469013-GAAG-CAAT 11313337-GAAG-CAAT ***
13472998-CGG-GGC 11317322-CGG-GGC ***
13488267-AAGACGC-GAGATGT 11332591-AAGACGC-GAGATGT ***
13535697-GTGTAC-ATATAT 11380021-GTGTAC-ATATAT ***
14900672-G-TT 12788739-G-TT ***
16290795-A-ATATACACCAC 14178915-A-ATATACACCAC ***
16397060-A-AG 14285180-A-AG ***
17070714-CG-C 14958834-CG-C ***
18297876-C-CTTTTTTT 16185996-C-CTTTTTTT P6_Prx 31×T***
21012755-TAT-GAG 18850869-TAT-GAG P4_Dst ***
22352888-ACTC-TTTT 20191002-ACTC-TTTT DYZ19 ***
22354847-ACTTAAAT-CCTTGAAA 20192961-ACTTAAAT-CCTTGAAA DYZ19 ***
22366502-TCCACAA-CCCAGAG 20204616-TCCACAA-CCCAGAG DYZ19 ***
22420878-AAA-GAG 20258992-AAA-GAG DYZ19 ***
22421434-CCTTTACGCTGAG-ACTTAGTGGTGAC 20259548-CCTTTACGCTGAG-ACTTAGTGGTGAC DYZ19 ***
22421777-GGTCT-TGTC 20259891-GGTCT-TGTC DYZ19 ***
22421797-TGAAA-AGAAG 20259911-TGAAA-AGAAG DYZ19 ***
22421813-TAC-CAGT 20259927-TAC-CAGT DYZ19 ***
22457243-ACAGCACTTTAAGGTGT-TCAGAAATGAAAGATGC 20295357-ACAGCACTTTAAGGTGT-TCAGAAATGAAAGATGC DYZ19 ***
22481863-GA-TT 20319977-GA-TT DYZ19 ***
22504416-CGAA-AGAC 20342530-CGAA-AGAC DYZ19 ***
23505495-C-AAA 21343609-C-AAA 23×A***
24484185-A-ACAGCACTC 22338038-A-ACAGCACTC ***
24686428-C-CTTTT 22540281-C-CTTTT P3_b2 23×T***
25351447-AACTT-A 23205300-AACTT-A P2_r1 ***
25709386-G-GTTTTTTTTTT 23563239-G-GTTTTTTTTTT P1_b3 31×T***
26310660-T-TTTTGAA 24164513-T-TTTTGAA P1_Y1 ***
27151329-G-TTT 25005182-G-TTT P1_g3 ***
28454742-CTTTATAATTCTCTGTA-ATTTTTTTTTTTTTTTT 26308595-CTTTATAATTCTCTGTA-ATTTTTTTTTTTTTTTT P1_gr2 ***
28454771-CACTATGTTG-TGCTCTGCCA 26308624-CACTATGTTG-TGCTCTGCCA P1_gr2 ***
28491404-CACATG-AAAAAA 26345257-CACATG-AAAAAA ***
58829066-TTCCCTTCCGTTCGAT-GTCCATTCCGTTCGAA 56761790-ATCGAACGGAAGGGAA-TTCGAACGGAATGGAC ***
58849229-GTTTTCTTCCA-G 56741619-GAATGGAAGAA-G ***
58874441-ATCCC-TTCCT 56716426-GGGAT-AGGAA ***
58874460-AT-A 56716408-TA-T ***
58874465-AG-TAT 56716405-CT-ATA ***
58874476-ATAGATTC-TTACATTG 56716388-GAATCTAT-CAATGTAA ***
58874490-TTTGCCTTCC-GTATCCAATCT 56716372-GGAAGGCAAA-AGATTGGATAC ***
58876306-ATTGC-TTTGT 56714561-GCAAT-ACAAA ***
58882046-CTCC-TTCA 56708822-GGAG-TGAA ***
58907347-TTCCG-CTCCA 56683520-CGGAA-TGGAG ***
58916150-CTCC-TTCA 56674718-GGAG-TGAA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.