Reynolds

FGC: SAXZC

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > CTS3655 > FT135171 > L627 > FGC3911

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRFGC
SAXZC
hg19:Y:15676178-G-A hg38:Y:13564298-G-A FGC3901 Z10674 Y+
hg19:Y:2965010-C-G hg38:Y:3096969-C-G FGC3904 +
hg19:Y:3025790-C-T hg38:Y:3157749-C-T FGC3905 +
hg19:Y:3775282-G-T hg38:Y:3907241-G-T FGC3906 +
hg19:Y:4124386-T-G hg38:Y:4256345-T-G FGC3907 +
hg19:Y:5359157-A-T hg38:Y:5491116-A-T L625 +
hg19:Y:7059475-C-T hg38:Y:7191434-C-T FGC3909 Y+
hg19:Y:9101362-G-A hg38:Y:9263753-G-A FGC3915 Y+
hg19:Y:13941880-A-G hg38:Y:11821174-A-G FGC3917 Y+
hg19:Y:14011877-G-T hg38:Y:11891171-G-T FGC3918 Y+
hg19:Y:14708498-C-T hg38:Y:12596564-C-T FGC3921FGC3921 YY+
hg19:Y:15051218-C-T hg38:Y:12939309-C-T FGC3923 YY+
hg19:Y:15750967-T-A hg38:Y:13639087-T-A FGC3924 YY+
hg19:Y:16469744-T-C hg38:Y:14357864-T-C FGC3926 Y+
hg19:Y:16492529-C-A hg38:Y:14380649-C-A L626 YY+
hg19:Y:16609044-C-A hg38:Y:14497164-C-A FGC3927 YY+
hg19:Y:17622242-G-A hg38:Y:15510362-G-A FGC3928 Y+
hg19:Y:18408759-A-G hg38:Y:16296879-A-G FGC3930 P6_Gap +
hg19:Y:21456130-C-T hg38:Y:19294244-C-T FGC3932 YY+
hg19:Y:22834676-T-A hg38:Y:20672790-T-A FGC3937 YY+
hg19:Y:23458488-G-T hg38:Y:21296602-G-T FGC3939 YY+
hg19:Y:28579952-A-T hg38:Y:26433805-A-T FGC3943 +
hg19:Y:6328811-A-C hg38:Y:6460770-A-C FGC3908 IR3_Dst *
hg19:Y:7373407-C-G hg38:Y:7505366-C-G FGC3910 Y*
hg19:Y:14961679-T-C hg38:Y:12849754-T-C FGC3922 Y*
hg19:Y:16357166-G-A hg38:Y:14245286-G-A FGC3925 YY*
hg19:Y:24932695-C-T hg38:Y:22786548-C-T FGC3940 g1 *
hg19:Y:27647624-G-C hg38:Y:25501477-G-C FGC3942 P1_Y2 *
hg19:Y:23127168-T-TA hg38:Y:20965282-T-TA FGC3944 *
hg19:Y:28802833-T-G hg38:Y:26656686-T-G **
hg19:Y:13432517-C-G hg38:Y:11276841-C-G **
hg19:Y:13417550-T-C hg38:Y:11261874-T-C Z12234 **
hg19:Y:28802831-A-G hg38:Y:26656684-A-G **
hg19:Y:25804874-T-C hg38:Y:23658727-T-C P1_b3 **
hg19:Y:20454052-A-G hg38:Y:18292166-A-G FGC53414 P5_Dst **
hg19:Y:5251987-C-G hg38:Y:5383946-C-G FT219426 **
hg19:Y:4681904-A-C hg38:Y:4813863-A-C **
hg19:Y:5251981-A-T hg38:Y:5383940-A-T FT386783 **
hg19:Y:16590674-T-C hg38:Y:14478794-T-C **
hg19:Y:16590681-C-A hg38:Y:14478801-C-A **
hg19:Y:18520629-A-G hg38:Y:16408749-A-G P6_Dst **
hg19:Y:19025729-G-T hg38:Y:16913849-G-T **
hg19:Y:28034054-A-T hg38:Y:25887907-A-T P1_Y2 **
hg19:Y:9070124-C-CAAT hg38:Y:9232515-C-CAAT 10×AAT**
hg19:Y:2888870-C-CAAAAAAA hg38:Y:3020829-C-CAAAAAAA 32×A**
hg19:Y:3238695-A-AT hg38:Y:3370654-A-AT 10×T**
hg19:Y:9393291-T-TTTTG hg38:Y:9555682-T-TTTTG 5×TTTG**
hg19:Y:9408726-TTGAG-T hg38:Y:9571117-TTGAG-T **
hg19:Y:13457157-G-GATTCC hg38:Y:11301481-G-GATTCC 4×ATTCC**
hg19:Y:27617980-C-CAAAA hg38:Y:25471833-C-CAAAA P1_Y2 29×A**
hg19:Y:13449696-CTCCAT-C hg38:Y:11294020-CTCCAT-C 11×TCCAT***
hg19:Y:22342953-A-G hg38:Y:20181067-A-G DYZ19 ***
hg19:Y:22343082-A-T hg38:Y:20181196-A-T DYZ19 ***
hg19:Y:24895656-G-A hg38:Y:22749509-G-A g1 ***
hg19:Y:13440798-A-C hg38:Y:11285122-A-C ***
hg19:Y:13484461-T-A hg38:Y:11328785-T-A ***
hg19:Y:22342023-T-G hg38:Y:20180137-T-G DYZ19 ***
hg19:Y:58852098-G-A hg38:Y:56738773-C-T ***
hg19:Y:22257091-T-G hg38:Y:20095205-T-G DYZ19 ***
hg19:Y:58852068-C-T hg38:Y:56738803-G-A ***
hg19:Y:58852082-T-C hg38:Y:56738789-A-G ***
hg19:Y:58867471-G-A hg38:Y:56723400-C-T ***
hg19:Y:58910382-G-T hg38:Y:56680489-C-A ***
hg19:Y:22268227-TCCAGAG-CATAGAT hg38:Y:20106341-TCCAGAG-CATAGAT DYZ19 ***
hg19:Y:24895651-G-A hg38:Y:22749504-G-A g1 ***
hg19:Y:14491216-T-A hg38:Y:12370485-A-. ***
hg19:Y:22342963-A-G hg38:Y:20181077-A-G DYZ19 ***
hg19:Y:28237969-T-C hg38:Y:26091822-T-C P1_b4 ***
hg19:Y:26152094-TCTC-CCTT hg38:Y:24005947-TCTC-CCTT P1_Y1 ***
hg19:Y:58829066-TTCCC-GTCCA hg38:Y:56761801-GGGAA-TGGAC ***
hg19:Y:22263730-C-A hg38:Y:20101844-C-A DYZ19 ***
hg19:Y:25709386-G-GTTTTTT hg38:Y:23563239-G-GTTTTTT P1_b3 31×T***
hg19:Y:19346433-CCTTT-C hg38:Y:17234553-CCTTT-C 15×CTTT***
hg19:Y:26325041-G-A hg38:Y:24178894-G-A P1_Y1 ***
hg19:Y:13199183-C-AA hg38:Y:11043507-C-AA ***
hg19:Y:13474828-A-G hg38:Y:11319152-A-G ***
hg19:Y:13470168-AG-CC hg38:Y:11314492-AG-CC ***
hg19:Y:22503361-A-G hg38:Y:20341475-A-G DYZ19 ***
hg19:Y:22421354-T-A hg38:Y:20259468-T-A DYZ19 ***
hg19:Y:22481641-T-A hg38:Y:20319755-T-A DYZ19 ***
hg19:Y:22481754-G-T hg38:Y:20319868-G-T DYZ19 ***
hg19:Y:22234368-TC-GA hg38:Y:20072482-TC-GA DYZ19 ***
hg19:Y:22421286-GAAC-TTACA hg38:Y:20259400-GAAC-TTACA DYZ19 ***
hg19:Y:22421293-AGAA-GGAG hg38:Y:20259407-AGAA-GGAG DYZ19 ***
hg19:Y:22421312-TTAC-CAGT hg38:Y:20259426-TTAC-CAGT DYZ19 ***
hg19:Y:22421360-CC-AT hg38:Y:20259474-CC-AT DYZ19 ***
hg19:Y:22481673-AT-TA hg38:Y:20319787-AT-TA DYZ19 ***
hg19:Y:23901429-N-C hg38:Y:21739543-N-C ***
hg19:Y:22344721-G-A hg38:Y:20182835-G-A DYZ19 ***
hg19:Y:22289469-T-C hg38:Y:20127583-T-C DYZ19 ***
hg19:Y:22481103-C-G hg38:Y:20319217-C-G DYZ19 ***
hg19:Y:22481114-G-A hg38:Y:20319228-G-A DYZ19 ***
hg19:Y:58851946-G-C hg38:Y:56738925-C-G ***
hg19:Y:22272937-TA-T hg38:Y:20111051-TA-T DYZ19 ***
hg19:Y:2860458-G-GTTTTTT hg38:Y:2992417-G-GTTTTTT 18×T***
hg19:Y:22236782-CGA-TGG hg38:Y:20074896-CGA-TGG DYZ19 ***
hg19:Y:13474834-G-C hg38:Y:11319158-G-C ***
hg19:Y:58831521-G-T hg38:Y:56759350-C-A ***
hg19:Y:13435360-ATA-GTC hg38:Y:11279684-ATA-GTC ***
hg19:Y:13488450-GCAG-TCAC hg38:Y:11332774-GCAG-TCAC ***
hg19:Y:13488477-CGCGCAGTCAGG-TGCATAGGCAGA hg38:Y:11332801-CGCGCAGTCAGG-TGCATAGGCAGA ***
hg19:Y:22367118-GA-AG hg38:Y:20205232-GA-AG DYZ19 ***
hg19:Y:22367198-CTAATT-AGAATG hg38:Y:20205312-CTAATT-AGAATG DYZ19 ***
hg19:Y:58831534-ATCCT-TTCAA hg38:Y:56759333-AGGAT-TTGAA ***
hg19:Y:58831547-CATTT-GATGA hg38:Y:56759320-AAATG-TCATC ***
hg19:Y:58831558-ATTCC-TTTCG hg38:Y:56759309-GGAAT-CGAAA ***
hg19:Y:58831529-T-A hg38:Y:56759342-A-T ***
hg19:Y:22297151-TTC-GGA hg38:Y:20135265-TTC-GGA DYZ19 ***
hg19:Y:58831512-CATT-TATG hg38:Y:56759356-AATG-CATA ***
hg19:Y:8964954-N-T hg38:Y:9096913-N-T ***
hg19:Y:8660569-G-A hg38:Y:8792528-G-A ***
hg19:Y:13703199-C-T hg38:Y:11547523-C-T DYZ17 ***
hg19:Y:13481732-G-C hg38:Y:11326056-G-C ***
hg19:Y:13481756-C-T hg38:Y:11326080-C-T ***
hg19:Y:4909395-T-C hg38:Y:5041354-T-C ***
hg19:Y:22344649-A-C hg38:Y:20182763-A-C DYZ19 ***
hg19:Y:13481723-A-C hg38:Y:11326047-A-C ***
hg19:Y:58847716-G-A hg38:Y:56743155-C-T ***
hg19:Y:27398709-C-T hg38:Y:25252562-C-T FGC28799 P1_g3 ***
hg19:Y:13481755-C-G hg38:Y:11326079-C-G F18185 ***
hg19:Y:13481812-A-G hg38:Y:11326136-A-G ***
hg19:Y:4909418-C-T hg38:Y:5041377-C-T ***
hg19:Y:4909447-A-G hg38:Y:5041406-A-G ***
hg19:Y:6638707-C-G hg38:Y:6770666-C-G ***
hg19:Y:8826708-C-A hg38:Y:8958667-C-A ***
hg19:Y:9310929-G-T hg38:Y:9473320-G-T ***
hg19:Y:13129621-G-A hg38:Y:10619107-G-A ***
hg19:Y:13481685-A-T hg38:Y:11326009-A-T ***
hg19:Y:13548993-A-G hg38:Y:11393317-A-G ***
hg19:Y:13708398-A-C hg38:Y:11552722-A-C DYZ17 ***
hg19:Y:16351267-G-T hg38:Y:14239387-G-T ***
hg19:Y:16590730-G-A hg38:Y:14478850-G-A ***
hg19:Y:16785196-T-C hg38:Y:14673316-T-C ***
hg19:Y:17523590-A-T hg38:Y:15411710-A-T ***
hg19:Y:19071654-T-C hg38:Y:16959774-T-C ***
hg19:Y:20243335-A-T hg38:Y:18081449-A-T P5_Dst ***
hg19:Y:20537954-G-C hg38:Y:18376068-G-C P5_Dst ***
hg19:Y:20537970-G-C hg38:Y:18376084-G-C P5_Dst ***
hg19:Y:20537986-C-A hg38:Y:18376100-C-A P5_Dst ***
hg19:Y:20538015-C-T hg38:Y:18376129-C-T P5_Dst ***
hg19:Y:20538027-C-T hg38:Y:18376141-C-T P5_Dst ***
hg19:Y:20538032-C-A hg38:Y:18376146-C-A P5_Dst ***
hg19:Y:20860504-G-C hg38:Y:18698618-G-C P4_Dst ***
hg19:Y:20995349-C-G hg38:Y:18833463-C-G P4_Dst ***
hg19:Y:22198235-G-T hg38:Y:20036349-G-T ***
hg19:Y:22226543-C-T hg38:Y:20064657-C-T ZS4894 DYZ19 ***
hg19:Y:22234939-C-A hg38:Y:20073053-C-A DYZ19 ***
hg19:Y:22248698-A-C hg38:Y:20086812-A-C DYZ19 ***
hg19:Y:22248798-G-C hg38:Y:20086912-G-C DYZ19 ***
hg19:Y:22250569-T-A hg38:Y:20088683-T-A DYZ19 ***
hg19:Y:22293088-T-G hg38:Y:20131202-T-G DYZ19 ***
hg19:Y:22311211-G-T hg38:Y:20149325-G-T DYZ19 ***
hg19:Y:22332421-A-C hg38:Y:20170535-A-C DYZ19 ***
hg19:Y:22335798-C-T hg38:Y:20173912-C-T DYZ19 ***
hg19:Y:22342390-G-C hg38:Y:20180504-G-C DYZ19 ***
hg19:Y:22343981-T-C hg38:Y:20182095-T-C DYZ19 ***
hg19:Y:22348182-C-A hg38:Y:20186296-C-A DYZ19 ***
hg19:Y:22354660-T-A hg38:Y:20192774-T-A DYZ19 ***
hg19:Y:22354714-G-C hg38:Y:20192828-G-C DYZ19 ***
hg19:Y:22354720-G-T hg38:Y:20192834-G-T DYZ19 ***
hg19:Y:22354963-G-C hg38:Y:20193077-G-C DYZ19 ***
hg19:Y:22354981-G-A hg38:Y:20193095-G-A DYZ19 ***
hg19:Y:22354997-G-C hg38:Y:20193111-G-C DYZ19 ***
hg19:Y:22364443-C-A hg38:Y:20202557-C-A DYZ19 ***
hg19:Y:22364887-G-T hg38:Y:20203001-G-T DYZ19 ***
hg19:Y:22365599-G-T hg38:Y:20203713-G-T DYZ19 ***
hg19:Y:22365744-G-T hg38:Y:20203858-G-T DYZ19 ***
hg19:Y:22421721-G-T hg38:Y:20259835-G-T DYZ19 ***
hg19:Y:22477897-T-A hg38:Y:20316011-T-A FT294330 DYZ19 ***
hg19:Y:22496118-T-G hg38:Y:20334232-T-G DYZ19 ***
hg19:Y:26499946-G-T hg38:Y:24353799-G-T P1_Y1 ***
hg19:Y:26499948-G-T hg38:Y:24353801-G-T P1_Y1 ***
hg19:Y:26499950-G-T hg38:Y:24353803-G-T P1_Y1 ***
hg19:Y:27123877-C-A hg38:Y:24977730-C-A P1_g3 ***
hg19:Y:27462494-C-A hg38:Y:25316347-C-A P1_Y2 ***
hg19:Y:27724611-T-C hg38:Y:25578464-T-C P1_Y2 ***
hg19:Y:27724616-A-G hg38:Y:25578469-A-G P1_Y2 ***
hg19:Y:58824566-T-G hg38:Y:56766305-A-C ***
hg19:Y:58824571-T-A hg38:Y:56766300-A-T ***
hg19:Y:58824583-C-A hg38:Y:56766288-G-T ***
hg19:Y:58829060-G-C hg38:Y:56761811-C-G ***
hg19:Y:58831534-A-T hg38:Y:56759337-T-A ***
hg19:Y:58848531-A-T hg38:Y:56742340-T-A ***
hg19:Y:58867522-A-G hg38:Y:56723349-T-C ***
hg19:Y:58869751-G-C hg38:Y:56721120-C-G ***
hg19:Y:58880041-T-G hg38:Y:56710830-A-C ***
hg19:Y:58882183-C-T hg38:Y:56708688-G-A ***
hg19:Y:58882545-T-G hg38:Y:56708326-A-C ***
hg19:Y:58885486-C-G hg38:Y:56705385-G-C ***
hg19:Y:58893246-G-A hg38:Y:56697625-C-T ***
hg19:Y:58895124-T-A hg38:Y:56695747-A-T ***
hg19:Y:58903788-G-A hg38:Y:56687083-C-T ***
hg19:Y:58913068-C-A hg38:Y:56677803-G-T ***
hg19:Y:13479314-TAC-GAT hg38:Y:11323638-TAC-GAT ***
hg19:Y:22352888-ACTC-GTTT hg38:Y:20191002-ACTC-GTTT DYZ19 ***
hg19:Y:58916654-TTCCGTTCGATTCCCG-T hg38:Y:56674198-TGGACGGGAATCGAAC-T ***
hg19:Y:13481775-CT-AG hg38:Y:11326099-CT-AG ***
hg19:Y:9850623-GG-TA hg38:Y:10013014-GG-TA ***
hg19:Y:13470109-CAA-TCC hg38:Y:11314433-CAA-TCC ***
hg19:Y:2729648-C-CTTTTT hg38:Y:2861607-C-CTTTTT 25×T***
hg19:Y:3205858-C-CAAAAAAA hg38:Y:3337817-C-CAAAAAAA 15×A***
hg19:Y:3374847-C-CAAAAAA hg38:Y:3506806-C-CAAAAAA 23×A***
hg19:Y:3628709-G-GAAACCCAATAAA hg38:Y:3760668-G-GAAACCCAATAAA 26×A***
hg19:Y:4909303-CC-G hg38:Y:5041262-CC-G ***
hg19:Y:5433981-GTGTATA-G hg38:Y:5565940-GTGTATA-G ***
hg19:Y:6489371-C-CAAAAAAAAAAA hg38:Y:6621330-C-CAAAAAAAAAAA 25×A***
hg19:Y:7179734-G-GTTTTTT hg38:Y:7311693-G-GTTTTTT 25×T***
hg19:Y:9700802-A-AAAAAACC hg38:Y:9863193-A-AAAAAACC IR3_Prx ***
hg19:Y:13267597-C-CAAAAAAAA hg38:Y:11111921-C-CAAAAAAAA 11×A***
hg19:Y:13433424-T-TAAA hg38:Y:11277748-T-TAAA 10×A***
hg19:Y:13470158-AGG-GCC hg38:Y:11314482-AGG-GCC ***
hg19:Y:13474819-CCCCCA-TCTCCAG hg38:Y:11319143-CCCCCA-TCTCCAG ***
hg19:Y:13474845-CTTC-GTTA hg38:Y:11319169-CTTC-GTTA ***
hg19:Y:13476758-AG-CA hg38:Y:11321082-AG-CA ***
hg19:Y:13484443-AGCAGAGATA-TTCAGGGATG hg38:Y:11328767-AGCAGAGATA-TTCAGGGATG ***
hg19:Y:13488598-ACGA-GCGC hg38:Y:11332922-ACGA-GCGC ***
hg19:Y:13488961-CCA-GCC hg38:Y:11333285-CCA-GCC ***
hg19:Y:13708376-GA-G hg38:Y:11552700-GA-G DYZ17 ***
hg19:Y:13921125-C-CAAAAAAAAAAA hg38:Y:11800419-C-CAAAAAAAAAAA 10×A***
hg19:Y:15507783-G-GTTTTTT hg38:Y:13395903-G-GTTTTTT 25×T***
hg19:Y:16590681-CAA-AAC hg38:Y:14478801-CAA-AAC ***
hg19:Y:16590729-CG-TA hg38:Y:14478849-CG-TA ***
hg19:Y:16590758-GC-TT hg38:Y:14478878-GC-TT ***
hg19:Y:17081218-AC-TA hg38:Y:14969338-AC-TA ***
hg19:Y:17841328-GACACACAC-G hg38:Y:15729448-GACACACAC-G 22×AC***
hg19:Y:19025741-CAAG-GAAA hg38:Y:16913861-CAAG-GAAA ***
hg19:Y:19042179-CAAAAAA-C hg38:Y:16930299-CAAAAAA-C 17×A***
hg19:Y:19720709-A-AATTATT hg38:Y:17608829-A-AATTATT P5_Prx 23×T***
hg19:Y:19740989-TACC-AACCA hg38:Y:17629109-TACC-AACCA P5_Prx ***
hg19:Y:20326007-C-CTTT hg38:Y:18164121-C-CTTT P5_Dst 29×T***
hg19:Y:20537995-AAGT-TAGC hg38:Y:18376109-AAGT-TAGC P5_Dst ***
hg19:Y:20538023-A-AGT hg38:Y:18376137-A-AGT P5_Dst ***
hg19:Y:20592055-AG-TA hg38:Y:18430169-AG-TA P5_Dst ***
hg19:Y:20995349-CTTC-GCTT hg38:Y:18833463-CTTC-GCTT P4_Dst ***
hg19:Y:21148589-C-CAAAA hg38:Y:18986703-C-CAAAA 30×A***
hg19:Y:21553428-T-TTTTTTTTTTTTTA hg38:Y:19391542-T-TTTTTTTTTTTTTA ***
hg19:Y:22048536-A-AC hg38:Y:19886650-A-AC ***
hg19:Y:22226524-TG-AC hg38:Y:20064638-TG-AC DYZ19 ***
hg19:Y:22263788-TGTTACAA-CGTTTCAG hg38:Y:20101902-TGTTACAA-CGTTTCAG DYZ19 ***
hg19:Y:22268290-CTTAGTGG-ATTGGTGT hg38:Y:20106404-CTTAGTGG-ATTGGTGT DYZ19 ***
hg19:Y:22268478-A-ACG hg38:Y:20106592-A-ACG DYZ19 ***
hg19:Y:22311258-ATTC-CTTA hg38:Y:20149372-ATTC-CTTA DYZ19 ***
hg19:Y:22326778-CC-TA hg38:Y:20164892-CC-TA DYZ19 ***
hg19:Y:22365980-GG-CC hg38:Y:20204094-GG-CC DYZ19 ***
hg19:Y:22367094-ATGG-CTGT hg38:Y:20205208-ATGG-CTGT DYZ19 ***
hg19:Y:22495773-TCCAAG-CTTCACT hg38:Y:20333887-TCCAAG-CTTCACT DYZ19 ***
hg19:Y:23196176-G-GTTTT hg38:Y:21034290-G-GTTTT 20×T***
hg19:Y:23350626-C-CCTGCTTTTCCCTTTCT hg38:Y:21188740-C-CCTGCTTTTCCCTTTCT 21×T***
hg19:Y:24408991-ACCC-A hg38:Y:22262844-ACCC-A 14×C***
hg19:Y:24447144-A-AAAGG hg38:Y:22300997-A-AAAGG ***
hg19:Y:24862285-CAATAG-AAAAAA hg38:Y:22716138-CAATAG-AAAAAA IR1_R ***
hg19:Y:27971726-C-CAAAAAAAA hg38:Y:25825579-C-CAAAAAAAA P1_Y2 27×A***
hg19:Y:28253491-C-CAAAA hg38:Y:26107344-C-CAAAA P1_b4 32×A***
hg19:Y:28336668-C-CAAA hg38:Y:26190521-C-CAAA P1_b4 31×A***
hg19:Y:28802746-TTCAAATTGCATA-ATGGAATGGAAAG hg38:Y:26656599-TTCAAATTGCATA-ATGGAATGGAAAG ***
hg19:Y:28804542-TGAAAGCAACT-GGAATGGGATC hg38:Y:26658395-TGAAAGCAACT-GGAATGGGATC ***
hg19:Y:28819269-GGTA-TGGG hg38:Y:26673122-GGTA-TGGG ***
hg19:Y:58824576-ATA-TTC hg38:Y:56766293-TAT-GAA ***
hg19:Y:58824589-C-CT hg38:Y:56766278-C-CA ***
hg19:Y:58824593-G-GATTC hg38:Y:56766277-G-GGAAT ***
hg19:Y:58824597-TCCAT-GCCAG hg38:Y:56766270-ATGGA-CTGGC ***
hg19:Y:58824606-ATC-TTG hg38:Y:56766263-GAT-CAA ***
hg19:Y:58824613-CCATTCTAGT-GCATACTACA hg38:Y:56766249-ACTAGAATGG-TGTAGTATGC ***
hg19:Y:58831496-CCGTTCGAT-TGATTCCAC hg38:Y:56759367-ATCGAACGG-GTGGAATCA ***
hg19:Y:58866446-CCCA-TCCG hg38:Y:56724422-TGGG-CGGA ***
hg19:Y:58893225-CATTCC-TCCTCA hg38:Y:56697641-GGAATG-TGAGGA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: SAXZC*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs1710
Variant counts last updated 2025-04-09 02:53:42.

* BED data not available. Using default values.

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