Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > CTS3655 > FT135171 > L627 > FGC3911

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
15676178-G-A 13564298-G-A FGC3901 Z10674 Y+
2965010-C-G 3096969-C-G FGC3904 +
3025790-C-T 3157749-C-T FGC3905 +
3775282-G-T 3907241-G-T FGC3906 +
4124386-T-G 4256345-T-G FGC3907 +
5359157-A-T 5491116-A-T L625 +
7059475-C-T 7191434-C-T FGC3909 Y+
9101362-G-A 9263753-G-A FGC3915 Y+
13941880-A-G 11821174-A-G FGC3917 Y+
14011877-G-T 11891171-G-T FGC3918 Y+
14708498-C-T 12596564-C-T FGC3921FGC3921 YY+
15051218-C-T 12939309-C-T FGC3923 YY+
15750967-T-A 13639087-T-A FGC3924 YY+
16469744-T-C 14357864-T-C FGC3926 Y+
16492529-C-A 14380649-C-A L626 YY+
16609044-C-A 14497164-C-A FGC3927 YY+
17622242-G-A 15510362-G-A FGC3928 Y+
18408759-A-G 16296879-A-G FGC3930 P6_Gap +
21456130-C-T 19294244-C-T FGC3932 YY+
22834676-T-A 20672790-T-A FGC3937 YY+
23458488-G-T 21296602-G-T FGC3939 YY+
28579952-A-T 26433805-A-T FGC3943 +
6328811-A-C 6460770-A-C FGC3908 IR3_Dst *
7373407-C-G 7505366-C-G FGC3910 Y*
14961679-T-C 12849754-T-C FGC3922 Y*
16357166-G-A 14245286-G-A FGC3925 YY*
24932695-C-T 22786548-C-T FGC3940 g1 *
27647624-G-C 25501477-G-C FGC3942 P1_Y2 *
23127168-T-TA 20965282-T-TA FGC3944 *
28802833-T-G 26656686-T-G **
13432517-C-G 11276841-C-G **
13417550-T-C 11261874-T-C Z12234 **
28802831-A-G 26656684-A-G **
25804874-T-C 23658727-T-C P1_b3 **
20454052-A-G 18292166-A-G FGC53414 P5_Dst **
5251987-C-G 5383946-C-G FT219426 **
4681904-A-C 4813863-A-C **
5251981-A-T 5383940-A-T FT386783 **
16590674-T-C 14478794-T-C **
16590681-C-A 14478801-C-A **
18520629-A-G 16408749-A-G P6_Dst **
19025729-G-T 16913849-G-T **
28034054-A-T 25887907-A-T P1_Y2 **
9070124-C-CAAT 9232515-C-CAAT 10×AAT**
2888870-C-CAAAAAAA 3020829-C-CAAAAAAA 32×A**
3238695-A-AT 3370654-A-AT 10×T**
9393291-T-TTTTG 9555682-T-TTTTG 5×TTTG**
9408726-TTGAG-T 9571117-TTGAG-T **
13457157-G-GATTCC 11301481-G-GATTCC 4×ATTCC**
27617980-C-CAAAA 25471833-C-CAAAA P1_Y2 29×A**
13449696-CTCCAT-C 11294020-CTCCAT-C 11×TCCAT***
22342953-A-G 20181067-A-G DYZ19 ***
22343082-A-T 20181196-A-T DYZ19 ***
24895656-G-A 22749509-G-A g1 ***
13440798-A-C 11285122-A-C ***
13484461-T-A 11328785-T-A ***
22342023-T-G 20180137-T-G DYZ19 ***
58852098-G-A 56738773-C-T ***
22257091-T-G 20095205-T-G DYZ19 ***
58852068-C-T 56738803-G-A ***
58852082-T-C 56738789-A-G ***
58867471-G-A 56723400-C-T ***
58910382-G-T 56680489-C-A ***
24895651-G-A 22749504-G-A g1 ***
14491216-T-A 12370485-A-. ***
22342963-A-G 20181077-A-G DYZ19 ***
28237969-T-C 26091822-T-C P1_b4 ***
26152094-TCTC-CCTT 24005947-TCTC-CCTT P1_Y1 ***
58829066-TTCCC-GTCCA 56761801-GGGAA-TGGAC ***
22263730-C-A 20101844-C-A DYZ19 ***
25709386-G-GTTTTTT 23563239-G-GTTTTTT P1_b3 31×T***
19346433-CCTTT-C 17234553-CCTTT-C 15×CTTT***
26325041-G-A 24178894-G-A P1_Y1 ***
13199183-C-AA 11043507-C-AA ***
13474828-A-G 11319152-A-G ***
13470168-AG-CC 11314492-AG-CC ***
22503361-A-G 20341475-A-G DYZ19 ***
22421354-T-A 20259468-T-A DYZ19 ***
22481641-T-A 20319755-T-A DYZ19 ***
22481754-G-T 20319868-G-T DYZ19 ***
22234368-TC-GA 20072482-TC-GA DYZ19 ***
22421286-GAAC-TTACA 20259400-GAAC-TTACA DYZ19 ***
22421293-AGAA-GGAG 20259407-AGAA-GGAG DYZ19 ***
22421312-TTAC-CAGT 20259426-TTAC-CAGT DYZ19 ***
22421360-CC-AT 20259474-CC-AT DYZ19 ***
22481673-AT-TA 20319787-AT-TA DYZ19 ***
23901429-N-C 21739543-N-C ***
22344721-G-A 20182835-G-A DYZ19 ***
22289469-T-C 20127583-T-C DYZ19 ***
22481103-C-G 20319217-C-G DYZ19 ***
22481114-G-A 20319228-G-A DYZ19 ***
58851946-G-C 56738925-C-G ***
22272937-TA-T 20111051-TA-T DYZ19 ***
2860458-G-GTTTTTT 2992417-G-GTTTTTT 18×T***
22236782-CGA-TGG 20074896-CGA-TGG DYZ19 ***
13474834-G-C 11319158-G-C ***
58831521-G-T 56759350-C-A ***
13435360-ATA-GTC 11279684-ATA-GTC ***
13488450-GCAG-TCAC 11332774-GCAG-TCAC ***
22367118-GA-AG 20205232-GA-AG DYZ19 ***
22367198-CTAATT-AGAATG 20205312-CTAATT-AGAATG DYZ19 ***
58831534-ATCCT-TTCAA 56759333-AGGAT-TTGAA ***
58831547-CATTT-GATGA 56759320-AAATG-TCATC ***
58831558-ATTCC-TTTCG 56759309-GGAAT-CGAAA ***
58831529-T-A 56759342-A-T ***
22297151-TTC-GGA 20135265-TTC-GGA DYZ19 ***
58831512-CATT-TATG 56759356-AATG-CATA ***
8964954-N-T 9096913-N-T ***
8660569-G-A 8792528-G-A ***
13703199-C-T 11547523-C-T ***
13481732-G-C 11326056-G-C ***
13481756-C-T 11326080-C-T ***
4909395-T-C 5041354-T-C ***
22344649-A-C 20182763-A-C DYZ19 ***
13481723-A-C 11326047-A-C ***
58847716-G-A 56743155-C-T ***
27398709-C-T 25252562-C-T FGC28799 P1_g3 ***
13481755-C-G 11326079-C-G F18185 ***
13481812-A-G 11326136-A-G ***
4909418-C-T 5041377-C-T ***
4909447-A-G 5041406-A-G ***
6638707-C-G 6770666-C-G ***
8826708-C-A 8958667-C-A ***
9310929-G-T 9473320-G-T ***
13129621-G-A 10619107-G-A ***
13481685-A-T 11326009-A-T ***
13548993-A-G 11393317-A-G ***
13708398-A-C 11552722-A-C ***
16351267-G-T 14239387-G-T ***
16590730-G-A 14478850-G-A ***
16785196-T-C 14673316-T-C ***
17523590-A-T 15411710-A-T ***
19071654-T-C 16959774-T-C ***
20243335-A-T 18081449-A-T P5_Dst ***
20537954-G-C 18376068-G-C P5_Dst ***
20537970-G-C 18376084-G-C P5_Dst ***
20537986-C-A 18376100-C-A P5_Dst ***
20538015-C-T 18376129-C-T P5_Dst ***
20538027-C-T 18376141-C-T P5_Dst ***
20538032-C-A 18376146-C-A P5_Dst ***
20860504-G-C 18698618-G-C P4_Dst ***
20995349-C-G 18833463-C-G P4_Dst ***
22198235-G-T 20036349-G-T ***
22226543-C-T 20064657-C-T ZS4894 DYZ19 ***
22234939-C-A 20073053-C-A DYZ19 ***
22248698-A-C 20086812-A-C DYZ19 ***
22248798-G-C 20086912-G-C DYZ19 ***
22250569-T-A 20088683-T-A DYZ19 ***
22293088-T-G 20131202-T-G DYZ19 ***
22311211-G-T 20149325-G-T DYZ19 ***
22332421-A-C 20170535-A-C DYZ19 ***
22335798-C-T 20173912-C-T DYZ19 ***
22342390-G-C 20180504-G-C DYZ19 ***
22343981-T-C 20182095-T-C DYZ19 ***
22348182-C-A 20186296-C-A DYZ19 ***
22354660-T-A 20192774-T-A DYZ19 ***
22354714-G-C 20192828-G-C DYZ19 ***
22354720-G-T 20192834-G-T DYZ19 ***
22354963-G-C 20193077-G-C DYZ19 ***
22354981-G-A 20193095-G-A DYZ19 ***
22354997-G-C 20193111-G-C DYZ19 ***
22364443-C-A 20202557-C-A DYZ19 ***
22364887-G-T 20203001-G-T DYZ19 ***
22365599-G-T 20203713-G-T DYZ19 ***
22365744-G-T 20203858-G-T DYZ19 ***
22421721-G-T 20259835-G-T DYZ19 ***
22477897-T-A 20316011-T-A FT294330 DYZ19 ***
22496118-T-G 20334232-T-G DYZ19 ***
26499946-G-T 24353799-G-T P1_Y1 ***
26499948-G-T 24353801-G-T P1_Y1 ***
26499950-G-T 24353803-G-T P1_Y1 ***
27123877-C-A 24977730-C-A P1_g3 ***
27462494-C-A 25316347-C-A P1_Y2 ***
27724611-T-C 25578464-T-C P1_Y2 ***
27724616-A-G 25578469-A-G P1_Y2 ***
58824566-T-G 56766305-A-C ***
58824571-T-A 56766300-A-T ***
58824583-C-A 56766288-G-T ***
58829060-G-C 56761811-C-G ***
58831534-A-T 56759337-T-A ***
58848531-A-T 56742340-T-A ***
58867522-A-G 56723349-T-C ***
58869751-G-C 56721120-C-G ***
58880041-T-G 56710830-A-C ***
58882183-C-T 56708688-G-A ***
58882545-T-G 56708326-A-C ***
58885486-C-G 56705385-G-C ***
58893246-G-A 56697625-C-T ***
58895124-T-A 56695747-A-T ***
58903788-G-A 56687083-C-T ***
58913068-C-A 56677803-G-T ***
13479314-TAC-GAT 11323638-TAC-GAT ***
22352888-ACTC-GTTT 20191002-ACTC-GTTT DYZ19 ***
13481775-CT-AG 11326099-CT-AG ***
9850623-GG-TA 10013014-GG-TA ***
13470109-CAA-TCC 11314433-CAA-TCC ***
2729648-C-CTTTTT 2861607-C-CTTTTT 25×T***
3205858-C-CAAAAAAA 3337817-C-CAAAAAAA 15×A***
3374847-C-CAAAAAA 3506806-C-CAAAAAA 23×A***
4909303-CC-G 5041262-CC-G ***
5433981-GTGTATA-G 5565940-GTGTATA-G ***
7179734-G-GTTTTTT 7311693-G-GTTTTTT 25×T***
9700802-A-AAAAAACC 9863193-A-AAAAAACC IR3_Prx ***
13267597-C-CAAAAAAAA 11111921-C-CAAAAAAAA 11×A***
13433424-T-TAAA 11277748-T-TAAA 10×A***
13470158-AGG-GCC 11314482-AGG-GCC ***
13474845-CTTC-GTTA 11319169-CTTC-GTTA ***
13476758-AG-CA 11321082-AG-CA ***
13488598-ACGA-GCGC 11332922-ACGA-GCGC ***
13488961-CCA-GCC 11333285-CCA-GCC ***
13708376-GA-G 11552700-GA-G ***
13921125-C-CAAAAAAAAAAA 11800419-C-CAAAAAAAAAAA 10×A***
15507783-G-GTTTTTT 13395903-G-GTTTTTT 25×T***
16590681-CAA-AAC 14478801-CAA-AAC ***
16590729-CG-TA 14478849-CG-TA ***
16590758-GC-TT 14478878-GC-TT ***
17081218-AC-TA 14969338-AC-TA ***
17841328-GACACACAC-G 15729448-GACACACAC-G 22×AC***
19025741-CAAG-GAAA 16913861-CAAG-GAAA ***
19042179-CAAAAAA-C 16930299-CAAAAAA-C 17×A***
19720709-A-AATTATT 17608829-A-AATTATT P5_Prx 23×T***
19740989-TACC-AACCA 17629109-TACC-AACCA P5_Prx ***
20326007-C-CTTT 18164121-C-CTTT P5_Dst 29×T***
20537995-AAGT-TAGC 18376109-AAGT-TAGC P5_Dst ***
20538023-A-AGT 18376137-A-AGT P5_Dst ***
20592055-AG-TA 18430169-AG-TA P5_Dst ***
20995349-CTTC-GCTT 18833463-CTTC-GCTT P4_Dst ***
21148589-C-CAAAA 18986703-C-CAAAA 30×A***
22048536-A-AC 19886650-A-AC ***
22226524-TG-AC 20064638-TG-AC DYZ19 ***
22268478-A-ACG 20106592-A-ACG DYZ19 ***
22311258-ATTC-CTTA 20149372-ATTC-CTTA DYZ19 ***
22326778-CC-TA 20164892-CC-TA DYZ19 ***
22365980-GG-CC 20204094-GG-CC DYZ19 ***
22367094-ATGG-CTGT 20205208-ATGG-CTGT DYZ19 ***
23196176-G-GTTTT 21034290-G-GTTTT 20×T***
24408991-ACCC-A 22262844-ACCC-A 14×C***
24447144-A-AAAGG 22300997-A-AAAGG ***
24862285-CAATAG-AAAAAA 22716138-CAATAG-AAAAAA IR1_R ***
27971726-C-CAAAAAAAA 25825579-C-CAAAAAAAA P1_Y2 27×A***
28253491-C-CAAAA 26107344-C-CAAAA P1_b4 32×A***
28336668-C-CAAA 26190521-C-CAAA P1_b4 31×A***
28819269-GGTA-TGGG 26673122-GGTA-TGGG ***
58824576-ATA-TTC 56766293-TAT-GAA ***
58824589-C-CT 56766278-C-CA ***
58824593-G-GATTC 56766277-G-GGAAT ***
58824597-TCCAT-GCCAG 56766270-ATGGA-CTGGC ***
58824606-ATC-TTG 56766263-GAT-CAA ***
58866446-CCCA-TCCG 56724422-TGGG-CGGA ***
58893225-CATTCC-TCCTCA 56697641-GGAATG-TGAGGA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.