Reynolds
FGC: SAXZCTree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | FGC SAXZC |
---|---|---|---|---|---|---|---|
hg19:Y:15676178-G-A hg38:Y:13564298-G-A | FGC3901 Z10674 | Y | + | ||||
hg19:Y:2965010-C-G hg38:Y:3096969-C-G | FGC3904 | + | |||||
hg19:Y:3025790-C-T hg38:Y:3157749-C-T | FGC3905 | + | |||||
hg19:Y:3775282-G-T hg38:Y:3907241-G-T | FGC3906 | + | |||||
hg19:Y:4124386-T-G hg38:Y:4256345-T-G | FGC3907 | + | |||||
hg19:Y:5359157-A-T hg38:Y:5491116-A-T | L625 | + | |||||
hg19:Y:7059475-C-T hg38:Y:7191434-C-T | FGC3909 | Y | + | ||||
hg19:Y:9101362-G-A hg38:Y:9263753-G-A | FGC3915 | Y | + | ||||
hg19:Y:13941880-A-G hg38:Y:11821174-A-G | FGC3917 | Y | + | ||||
hg19:Y:14011877-G-T hg38:Y:11891171-G-T | FGC3918 | Y | + | ||||
hg19:Y:14708498-C-T hg38:Y:12596564-C-T | FGC3921 | FGC3921 | Y | Y | + | ||
hg19:Y:15051218-C-T hg38:Y:12939309-C-T | FGC3923 | Y | Y | + | |||
hg19:Y:15750967-T-A hg38:Y:13639087-T-A | FGC3924 | Y | Y | + | |||
hg19:Y:16469744-T-C hg38:Y:14357864-T-C | FGC3926 | Y | + | ||||
hg19:Y:16492529-C-A hg38:Y:14380649-C-A | L626 | Y | Y | + | |||
hg19:Y:16609044-C-A hg38:Y:14497164-C-A | FGC3927 | Y | Y | + | |||
hg19:Y:17622242-G-A hg38:Y:15510362-G-A | FGC3928 | Y | + | ||||
hg19:Y:18408759-A-G hg38:Y:16296879-A-G | FGC3930 | P6_Gap | + | ||||
hg19:Y:21456130-C-T hg38:Y:19294244-C-T | FGC3932 | Y | Y | + | |||
hg19:Y:22834676-T-A hg38:Y:20672790-T-A | FGC3937 | Y | Y | + | |||
hg19:Y:23458488-G-T hg38:Y:21296602-G-T | FGC3939 | Y | Y | + | |||
hg19:Y:28579952-A-T hg38:Y:26433805-A-T | FGC3943 | + | |||||
hg19:Y:6328811-A-C hg38:Y:6460770-A-C | FGC3908 | IR3_Dst | * | ||||
hg19:Y:7373407-C-G hg38:Y:7505366-C-G | FGC3910 | Y | * | ||||
hg19:Y:14961679-T-C hg38:Y:12849754-T-C | FGC3922 | Y | * | ||||
hg19:Y:16357166-G-A hg38:Y:14245286-G-A | FGC3925 | Y | Y | * | |||
hg19:Y:24932695-C-T hg38:Y:22786548-C-T | FGC3940 | g1 | * | ||||
hg19:Y:27647624-G-C hg38:Y:25501477-G-C | FGC3942 | P1_Y2 | * | ||||
hg19:Y:23127168-T-TA hg38:Y:20965282-T-TA | FGC3944 | * | |||||
hg19:Y:28802833-T-G hg38:Y:26656686-T-G | ** | ||||||
hg19:Y:13432517-C-G hg38:Y:11276841-C-G | ** | ||||||
hg19:Y:13417550-T-C hg38:Y:11261874-T-C | Z12234 | ** | |||||
hg19:Y:28802831-A-G hg38:Y:26656684-A-G | ** | ||||||
hg19:Y:25804874-T-C hg38:Y:23658727-T-C | P1_b3 | ** | |||||
hg19:Y:20454052-A-G hg38:Y:18292166-A-G | FGC53414 | P5_Dst | ** | ||||
hg19:Y:5251987-C-G hg38:Y:5383946-C-G | FT219426 | ** | |||||
hg19:Y:4681904-A-C hg38:Y:4813863-A-C | ** | ||||||
hg19:Y:5251981-A-T hg38:Y:5383940-A-T | FT386783 | ** | |||||
hg19:Y:16590674-T-C hg38:Y:14478794-T-C | ** | ||||||
hg19:Y:16590681-C-A hg38:Y:14478801-C-A | ** | ||||||
hg19:Y:18520629-A-G hg38:Y:16408749-A-G | P6_Dst | ** | |||||
hg19:Y:19025729-G-T hg38:Y:16913849-G-T | ** | ||||||
hg19:Y:28034054-A-T hg38:Y:25887907-A-T | P1_Y2 | ** | |||||
hg19:Y:9070124-C-CAAT hg38:Y:9232515-C-CAAT | 10×AAT | ** | |||||
hg19:Y:2888870-C-CAAAAAAA hg38:Y:3020829-C-CAAAAAAA | 32×A | ** | |||||
hg19:Y:3238695-A-AT hg38:Y:3370654-A-AT | 10×T | ** | |||||
hg19:Y:9393291-T-TTTTG hg38:Y:9555682-T-TTTTG | 5×TTTG | ** | |||||
hg19:Y:9408726-TTGAG-T hg38:Y:9571117-TTGAG-T | ** | ||||||
hg19:Y:13457157-G-GATTCC hg38:Y:11301481-G-GATTCC | 4×ATTCC | ** | |||||
hg19:Y:27617980-C-CAAAA hg38:Y:25471833-C-CAAAA | P1_Y2 | 29×A | ** | ||||
hg19:Y:13449696-CTCCAT-C hg38:Y:11294020-CTCCAT-C | 11×TCCAT | *** | |||||
hg19:Y:22342953-A-G hg38:Y:20181067-A-G | DYZ19 | *** | |||||
hg19:Y:22343082-A-T hg38:Y:20181196-A-T | DYZ19 | *** | |||||
hg19:Y:24895656-G-A hg38:Y:22749509-G-A | g1 | *** | |||||
hg19:Y:13440798-A-C hg38:Y:11285122-A-C | *** | ||||||
hg19:Y:13484461-T-A hg38:Y:11328785-T-A | *** | ||||||
hg19:Y:22342023-T-G hg38:Y:20180137-T-G | DYZ19 | *** | |||||
hg19:Y:58852098-G-A hg38:Y:56738773-C-T | *** | ||||||
hg19:Y:22257091-T-G hg38:Y:20095205-T-G | DYZ19 | *** | |||||
hg19:Y:58852068-C-T hg38:Y:56738803-G-A | *** | ||||||
hg19:Y:58852082-T-C hg38:Y:56738789-A-G | *** | ||||||
hg19:Y:58867471-G-A hg38:Y:56723400-C-T | *** | ||||||
hg19:Y:58910382-G-T hg38:Y:56680489-C-A | *** | ||||||
hg19:Y:22268227-TCCAGAG-CATAGAT hg38:Y:20106341-TCCAGAG-CATAGAT | DYZ19 | *** | |||||
hg19:Y:24895651-G-A hg38:Y:22749504-G-A | g1 | *** | |||||
hg19:Y:14491216-T-A hg38:Y:12370485-A-. | *** | ||||||
hg19:Y:22342963-A-G hg38:Y:20181077-A-G | DYZ19 | *** | |||||
hg19:Y:28237969-T-C hg38:Y:26091822-T-C | P1_b4 | *** | |||||
hg19:Y:26152094-TCTC-CCTT hg38:Y:24005947-TCTC-CCTT | P1_Y1 | *** | |||||
hg19:Y:58829066-TTCCC-GTCCA hg38:Y:56761801-GGGAA-TGGAC | *** | ||||||
hg19:Y:22263730-C-A hg38:Y:20101844-C-A | DYZ19 | *** | |||||
hg19:Y:25709386-G-GTTTTTT hg38:Y:23563239-G-GTTTTTT | P1_b3 | 31×T | *** | ||||
hg19:Y:19346433-CCTTT-C hg38:Y:17234553-CCTTT-C | 15×CTTT | *** | |||||
hg19:Y:26325041-G-A hg38:Y:24178894-G-A | P1_Y1 | *** | |||||
hg19:Y:13199183-C-AA hg38:Y:11043507-C-AA | *** | ||||||
hg19:Y:13474828-A-G hg38:Y:11319152-A-G | *** | ||||||
hg19:Y:13470168-AG-CC hg38:Y:11314492-AG-CC | *** | ||||||
hg19:Y:22503361-A-G hg38:Y:20341475-A-G | DYZ19 | *** | |||||
hg19:Y:22421354-T-A hg38:Y:20259468-T-A | DYZ19 | *** | |||||
hg19:Y:22481641-T-A hg38:Y:20319755-T-A | DYZ19 | *** | |||||
hg19:Y:22481754-G-T hg38:Y:20319868-G-T | DYZ19 | *** | |||||
hg19:Y:22234368-TC-GA hg38:Y:20072482-TC-GA | DYZ19 | *** | |||||
hg19:Y:22421286-GAAC-TTACA hg38:Y:20259400-GAAC-TTACA | DYZ19 | *** | |||||
hg19:Y:22421293-AGAA-GGAG hg38:Y:20259407-AGAA-GGAG | DYZ19 | *** | |||||
hg19:Y:22421312-TTAC-CAGT hg38:Y:20259426-TTAC-CAGT | DYZ19 | *** | |||||
hg19:Y:22421360-CC-AT hg38:Y:20259474-CC-AT | DYZ19 | *** | |||||
hg19:Y:22481673-AT-TA hg38:Y:20319787-AT-TA | DYZ19 | *** | |||||
hg19:Y:23901429-N-C hg38:Y:21739543-N-C | *** | ||||||
hg19:Y:22344721-G-A hg38:Y:20182835-G-A | DYZ19 | *** | |||||
hg19:Y:22289469-T-C hg38:Y:20127583-T-C | DYZ19 | *** | |||||
hg19:Y:22481103-C-G hg38:Y:20319217-C-G | DYZ19 | *** | |||||
hg19:Y:22481114-G-A hg38:Y:20319228-G-A | DYZ19 | *** | |||||
hg19:Y:58851946-G-C hg38:Y:56738925-C-G | *** | ||||||
hg19:Y:22272937-TA-T hg38:Y:20111051-TA-T | DYZ19 | *** | |||||
hg19:Y:2860458-G-GTTTTTT hg38:Y:2992417-G-GTTTTTT | 18×T | *** | |||||
hg19:Y:22236782-CGA-TGG hg38:Y:20074896-CGA-TGG | DYZ19 | *** | |||||
hg19:Y:13474834-G-C hg38:Y:11319158-G-C | *** | ||||||
hg19:Y:58831521-G-T hg38:Y:56759350-C-A | *** | ||||||
hg19:Y:13435360-ATA-GTC hg38:Y:11279684-ATA-GTC | *** | ||||||
hg19:Y:13488450-GCAG-TCAC hg38:Y:11332774-GCAG-TCAC | *** | ||||||
hg19:Y:13488477-CGCGCAGTCAGG-TGCATAGGCAGA hg38:Y:11332801-CGCGCAGTCAGG-TGCATAGGCAGA | *** | ||||||
hg19:Y:22367118-GA-AG hg38:Y:20205232-GA-AG | DYZ19 | *** | |||||
hg19:Y:22367198-CTAATT-AGAATG hg38:Y:20205312-CTAATT-AGAATG | DYZ19 | *** | |||||
hg19:Y:58831534-ATCCT-TTCAA hg38:Y:56759333-AGGAT-TTGAA | *** | ||||||
hg19:Y:58831547-CATTT-GATGA hg38:Y:56759320-AAATG-TCATC | *** | ||||||
hg19:Y:58831558-ATTCC-TTTCG hg38:Y:56759309-GGAAT-CGAAA | *** | ||||||
hg19:Y:58831529-T-A hg38:Y:56759342-A-T | *** | ||||||
hg19:Y:22297151-TTC-GGA hg38:Y:20135265-TTC-GGA | DYZ19 | *** | |||||
hg19:Y:58831512-CATT-TATG hg38:Y:56759356-AATG-CATA | *** | ||||||
hg19:Y:8964954-N-T hg38:Y:9096913-N-T | *** | ||||||
hg19:Y:8660569-G-A hg38:Y:8792528-G-A | *** | ||||||
hg19:Y:13703199-C-T hg38:Y:11547523-C-T | DYZ17 | *** | |||||
hg19:Y:13481732-G-C hg38:Y:11326056-G-C | *** | ||||||
hg19:Y:13481756-C-T hg38:Y:11326080-C-T | *** | ||||||
hg19:Y:4909395-T-C hg38:Y:5041354-T-C | *** | ||||||
hg19:Y:22344649-A-C hg38:Y:20182763-A-C | DYZ19 | *** | |||||
hg19:Y:13481723-A-C hg38:Y:11326047-A-C | *** | ||||||
hg19:Y:58847716-G-A hg38:Y:56743155-C-T | *** | ||||||
hg19:Y:27398709-C-T hg38:Y:25252562-C-T | FGC28799 | P1_g3 | *** | ||||
hg19:Y:13481755-C-G hg38:Y:11326079-C-G | F18185 | *** | |||||
hg19:Y:13481812-A-G hg38:Y:11326136-A-G | *** | ||||||
hg19:Y:4909418-C-T hg38:Y:5041377-C-T | *** | ||||||
hg19:Y:4909447-A-G hg38:Y:5041406-A-G | *** | ||||||
hg19:Y:6638707-C-G hg38:Y:6770666-C-G | *** | ||||||
hg19:Y:8826708-C-A hg38:Y:8958667-C-A | *** | ||||||
hg19:Y:9310929-G-T hg38:Y:9473320-G-T | *** | ||||||
hg19:Y:13129621-G-A hg38:Y:10619107-G-A | *** | ||||||
hg19:Y:13481685-A-T hg38:Y:11326009-A-T | *** | ||||||
hg19:Y:13548993-A-G hg38:Y:11393317-A-G | *** | ||||||
hg19:Y:13708398-A-C hg38:Y:11552722-A-C | DYZ17 | *** | |||||
hg19:Y:16351267-G-T hg38:Y:14239387-G-T | *** | ||||||
hg19:Y:16590730-G-A hg38:Y:14478850-G-A | *** | ||||||
hg19:Y:16785196-T-C hg38:Y:14673316-T-C | *** | ||||||
hg19:Y:17523590-A-T hg38:Y:15411710-A-T | *** | ||||||
hg19:Y:19071654-T-C hg38:Y:16959774-T-C | *** | ||||||
hg19:Y:20243335-A-T hg38:Y:18081449-A-T | P5_Dst | *** | |||||
hg19:Y:20537954-G-C hg38:Y:18376068-G-C | P5_Dst | *** | |||||
hg19:Y:20537970-G-C hg38:Y:18376084-G-C | P5_Dst | *** | |||||
hg19:Y:20537986-C-A hg38:Y:18376100-C-A | P5_Dst | *** | |||||
hg19:Y:20538015-C-T hg38:Y:18376129-C-T | P5_Dst | *** | |||||
hg19:Y:20538027-C-T hg38:Y:18376141-C-T | P5_Dst | *** | |||||
hg19:Y:20538032-C-A hg38:Y:18376146-C-A | P5_Dst | *** | |||||
hg19:Y:20860504-G-C hg38:Y:18698618-G-C | P4_Dst | *** | |||||
hg19:Y:20995349-C-G hg38:Y:18833463-C-G | P4_Dst | *** | |||||
hg19:Y:22198235-G-T hg38:Y:20036349-G-T | *** | ||||||
hg19:Y:22226543-C-T hg38:Y:20064657-C-T | ZS4894 | DYZ19 | *** | ||||
hg19:Y:22234939-C-A hg38:Y:20073053-C-A | DYZ19 | *** | |||||
hg19:Y:22248698-A-C hg38:Y:20086812-A-C | DYZ19 | *** | |||||
hg19:Y:22248798-G-C hg38:Y:20086912-G-C | DYZ19 | *** | |||||
hg19:Y:22250569-T-A hg38:Y:20088683-T-A | DYZ19 | *** | |||||
hg19:Y:22293088-T-G hg38:Y:20131202-T-G | DYZ19 | *** | |||||
hg19:Y:22311211-G-T hg38:Y:20149325-G-T | DYZ19 | *** | |||||
hg19:Y:22332421-A-C hg38:Y:20170535-A-C | DYZ19 | *** | |||||
hg19:Y:22335798-C-T hg38:Y:20173912-C-T | DYZ19 | *** | |||||
hg19:Y:22342390-G-C hg38:Y:20180504-G-C | DYZ19 | *** | |||||
hg19:Y:22343981-T-C hg38:Y:20182095-T-C | DYZ19 | *** | |||||
hg19:Y:22348182-C-A hg38:Y:20186296-C-A | DYZ19 | *** | |||||
hg19:Y:22354660-T-A hg38:Y:20192774-T-A | DYZ19 | *** | |||||
hg19:Y:22354714-G-C hg38:Y:20192828-G-C | DYZ19 | *** | |||||
hg19:Y:22354720-G-T hg38:Y:20192834-G-T | DYZ19 | *** | |||||
hg19:Y:22354963-G-C hg38:Y:20193077-G-C | DYZ19 | *** | |||||
hg19:Y:22354981-G-A hg38:Y:20193095-G-A | DYZ19 | *** | |||||
hg19:Y:22354997-G-C hg38:Y:20193111-G-C | DYZ19 | *** | |||||
hg19:Y:22364443-C-A hg38:Y:20202557-C-A | DYZ19 | *** | |||||
hg19:Y:22364887-G-T hg38:Y:20203001-G-T | DYZ19 | *** | |||||
hg19:Y:22365599-G-T hg38:Y:20203713-G-T | DYZ19 | *** | |||||
hg19:Y:22365744-G-T hg38:Y:20203858-G-T | DYZ19 | *** | |||||
hg19:Y:22421721-G-T hg38:Y:20259835-G-T | DYZ19 | *** | |||||
hg19:Y:22477897-T-A hg38:Y:20316011-T-A | FT294330 | DYZ19 | *** | ||||
hg19:Y:22496118-T-G hg38:Y:20334232-T-G | DYZ19 | *** | |||||
hg19:Y:26499946-G-T hg38:Y:24353799-G-T | P1_Y1 | *** | |||||
hg19:Y:26499948-G-T hg38:Y:24353801-G-T | P1_Y1 | *** | |||||
hg19:Y:26499950-G-T hg38:Y:24353803-G-T | P1_Y1 | *** | |||||
hg19:Y:27123877-C-A hg38:Y:24977730-C-A | P1_g3 | *** | |||||
hg19:Y:27462494-C-A hg38:Y:25316347-C-A | P1_Y2 | *** | |||||
hg19:Y:27724611-T-C hg38:Y:25578464-T-C | P1_Y2 | *** | |||||
hg19:Y:27724616-A-G hg38:Y:25578469-A-G | P1_Y2 | *** | |||||
hg19:Y:58824566-T-G hg38:Y:56766305-A-C | *** | ||||||
hg19:Y:58824571-T-A hg38:Y:56766300-A-T | *** | ||||||
hg19:Y:58824583-C-A hg38:Y:56766288-G-T | *** | ||||||
hg19:Y:58829060-G-C hg38:Y:56761811-C-G | *** | ||||||
hg19:Y:58831534-A-T hg38:Y:56759337-T-A | *** | ||||||
hg19:Y:58848531-A-T hg38:Y:56742340-T-A | *** | ||||||
hg19:Y:58867522-A-G hg38:Y:56723349-T-C | *** | ||||||
hg19:Y:58869751-G-C hg38:Y:56721120-C-G | *** | ||||||
hg19:Y:58880041-T-G hg38:Y:56710830-A-C | *** | ||||||
hg19:Y:58882183-C-T hg38:Y:56708688-G-A | *** | ||||||
hg19:Y:58882545-T-G hg38:Y:56708326-A-C | *** | ||||||
hg19:Y:58885486-C-G hg38:Y:56705385-G-C | *** | ||||||
hg19:Y:58893246-G-A hg38:Y:56697625-C-T | *** | ||||||
hg19:Y:58895124-T-A hg38:Y:56695747-A-T | *** | ||||||
hg19:Y:58903788-G-A hg38:Y:56687083-C-T | *** | ||||||
hg19:Y:58913068-C-A hg38:Y:56677803-G-T | *** | ||||||
hg19:Y:13479314-TAC-GAT hg38:Y:11323638-TAC-GAT | *** | ||||||
hg19:Y:22352888-ACTC-GTTT hg38:Y:20191002-ACTC-GTTT | DYZ19 | *** | |||||
hg19:Y:58916654-TTCCGTTCGATTCCCG-T hg38:Y:56674198-TGGACGGGAATCGAAC-T | *** | ||||||
hg19:Y:13481775-CT-AG hg38:Y:11326099-CT-AG | *** | ||||||
hg19:Y:9850623-GG-TA hg38:Y:10013014-GG-TA | *** | ||||||
hg19:Y:13470109-CAA-TCC hg38:Y:11314433-CAA-TCC | *** | ||||||
hg19:Y:2729648-C-CTTTTT hg38:Y:2861607-C-CTTTTT | 25×T | *** | |||||
hg19:Y:3205858-C-CAAAAAAA hg38:Y:3337817-C-CAAAAAAA | 15×A | *** | |||||
hg19:Y:3374847-C-CAAAAAA hg38:Y:3506806-C-CAAAAAA | 23×A | *** | |||||
hg19:Y:3628709-G-GAAACCCAATAAA hg38:Y:3760668-G-GAAACCCAATAAA | 26×A | *** | |||||
hg19:Y:4909303-CC-G hg38:Y:5041262-CC-G | *** | ||||||
hg19:Y:5433981-GTGTATA-G hg38:Y:5565940-GTGTATA-G | *** | ||||||
hg19:Y:6489371-C-CAAAAAAAAAAA hg38:Y:6621330-C-CAAAAAAAAAAA | 25×A | *** | |||||
hg19:Y:7179734-G-GTTTTTT hg38:Y:7311693-G-GTTTTTT | 25×T | *** | |||||
hg19:Y:9700802-A-AAAAAACC hg38:Y:9863193-A-AAAAAACC | IR3_Prx | *** | |||||
hg19:Y:13267597-C-CAAAAAAAA hg38:Y:11111921-C-CAAAAAAAA | 11×A | *** | |||||
hg19:Y:13433424-T-TAAA hg38:Y:11277748-T-TAAA | 10×A | *** | |||||
hg19:Y:13470158-AGG-GCC hg38:Y:11314482-AGG-GCC | *** | ||||||
hg19:Y:13474819-CCCCCA-TCTCCAG hg38:Y:11319143-CCCCCA-TCTCCAG | *** | ||||||
hg19:Y:13474845-CTTC-GTTA hg38:Y:11319169-CTTC-GTTA | *** | ||||||
hg19:Y:13476758-AG-CA hg38:Y:11321082-AG-CA | *** | ||||||
hg19:Y:13484443-AGCAGAGATA-TTCAGGGATG hg38:Y:11328767-AGCAGAGATA-TTCAGGGATG | *** | ||||||
hg19:Y:13488598-ACGA-GCGC hg38:Y:11332922-ACGA-GCGC | *** | ||||||
hg19:Y:13488961-CCA-GCC hg38:Y:11333285-CCA-GCC | *** | ||||||
hg19:Y:13708376-GA-G hg38:Y:11552700-GA-G | DYZ17 | *** | |||||
hg19:Y:13921125-C-CAAAAAAAAAAA hg38:Y:11800419-C-CAAAAAAAAAAA | 10×A | *** | |||||
hg19:Y:15507783-G-GTTTTTT hg38:Y:13395903-G-GTTTTTT | 25×T | *** | |||||
hg19:Y:16590681-CAA-AAC hg38:Y:14478801-CAA-AAC | *** | ||||||
hg19:Y:16590729-CG-TA hg38:Y:14478849-CG-TA | *** | ||||||
hg19:Y:16590758-GC-TT hg38:Y:14478878-GC-TT | *** | ||||||
hg19:Y:17081218-AC-TA hg38:Y:14969338-AC-TA | *** | ||||||
hg19:Y:17841328-GACACACAC-G hg38:Y:15729448-GACACACAC-G | 22×AC | *** | |||||
hg19:Y:19025741-CAAG-GAAA hg38:Y:16913861-CAAG-GAAA | *** | ||||||
hg19:Y:19042179-CAAAAAA-C hg38:Y:16930299-CAAAAAA-C | 17×A | *** | |||||
hg19:Y:19720709-A-AATTATT hg38:Y:17608829-A-AATTATT | P5_Prx | 23×T | *** | ||||
hg19:Y:19740989-TACC-AACCA hg38:Y:17629109-TACC-AACCA | P5_Prx | *** | |||||
hg19:Y:20326007-C-CTTT hg38:Y:18164121-C-CTTT | P5_Dst | 29×T | *** | ||||
hg19:Y:20537995-AAGT-TAGC hg38:Y:18376109-AAGT-TAGC | P5_Dst | *** | |||||
hg19:Y:20538023-A-AGT hg38:Y:18376137-A-AGT | P5_Dst | *** | |||||
hg19:Y:20592055-AG-TA hg38:Y:18430169-AG-TA | P5_Dst | *** | |||||
hg19:Y:20995349-CTTC-GCTT hg38:Y:18833463-CTTC-GCTT | P4_Dst | *** | |||||
hg19:Y:21148589-C-CAAAA hg38:Y:18986703-C-CAAAA | 30×A | *** | |||||
hg19:Y:21553428-T-TTTTTTTTTTTTTA hg38:Y:19391542-T-TTTTTTTTTTTTTA | *** | ||||||
hg19:Y:22048536-A-AC hg38:Y:19886650-A-AC | *** | ||||||
hg19:Y:22226524-TG-AC hg38:Y:20064638-TG-AC | DYZ19 | *** | |||||
hg19:Y:22263788-TGTTACAA-CGTTTCAG hg38:Y:20101902-TGTTACAA-CGTTTCAG | DYZ19 | *** | |||||
hg19:Y:22268290-CTTAGTGG-ATTGGTGT hg38:Y:20106404-CTTAGTGG-ATTGGTGT | DYZ19 | *** | |||||
hg19:Y:22268478-A-ACG hg38:Y:20106592-A-ACG | DYZ19 | *** | |||||
hg19:Y:22311258-ATTC-CTTA hg38:Y:20149372-ATTC-CTTA | DYZ19 | *** | |||||
hg19:Y:22326778-CC-TA hg38:Y:20164892-CC-TA | DYZ19 | *** | |||||
hg19:Y:22365980-GG-CC hg38:Y:20204094-GG-CC | DYZ19 | *** | |||||
hg19:Y:22367094-ATGG-CTGT hg38:Y:20205208-ATGG-CTGT | DYZ19 | *** | |||||
hg19:Y:22495773-TCCAAG-CTTCACT hg38:Y:20333887-TCCAAG-CTTCACT | DYZ19 | *** | |||||
hg19:Y:23196176-G-GTTTT hg38:Y:21034290-G-GTTTT | 20×T | *** | |||||
hg19:Y:23350626-C-CCTGCTTTTCCCTTTCT hg38:Y:21188740-C-CCTGCTTTTCCCTTTCT | 21×T | *** | |||||
hg19:Y:24408991-ACCC-A hg38:Y:22262844-ACCC-A | 14×C | *** | |||||
hg19:Y:24447144-A-AAAGG hg38:Y:22300997-A-AAAGG | *** | ||||||
hg19:Y:24862285-CAATAG-AAAAAA hg38:Y:22716138-CAATAG-AAAAAA | IR1_R | *** | |||||
hg19:Y:27971726-C-CAAAAAAAA hg38:Y:25825579-C-CAAAAAAAA | P1_Y2 | 27×A | *** | ||||
hg19:Y:28253491-C-CAAAA hg38:Y:26107344-C-CAAAA | P1_b4 | 32×A | *** | ||||
hg19:Y:28336668-C-CAAA hg38:Y:26190521-C-CAAA | P1_b4 | 31×A | *** | ||||
hg19:Y:28802746-TTCAAATTGCATA-ATGGAATGGAAAG hg38:Y:26656599-TTCAAATTGCATA-ATGGAATGGAAAG | *** | ||||||
hg19:Y:28804542-TGAAAGCAACT-GGAATGGGATC hg38:Y:26658395-TGAAAGCAACT-GGAATGGGATC | *** | ||||||
hg19:Y:28819269-GGTA-TGGG hg38:Y:26673122-GGTA-TGGG | *** | ||||||
hg19:Y:58824576-ATA-TTC hg38:Y:56766293-TAT-GAA | *** | ||||||
hg19:Y:58824589-C-CT hg38:Y:56766278-C-CA | *** | ||||||
hg19:Y:58824593-G-GATTC hg38:Y:56766277-G-GGAAT | *** | ||||||
hg19:Y:58824597-TCCAT-GCCAG hg38:Y:56766270-ATGGA-CTGGC | *** | ||||||
hg19:Y:58824606-ATC-TTG hg38:Y:56766263-GAT-CAA | *** | ||||||
hg19:Y:58824613-CCATTCTAGT-GCATACTACA hg38:Y:56766249-ACTAGAATGG-TGTAGTATGC | *** | ||||||
hg19:Y:58831496-CCGTTCGAT-TGATTCCAC hg38:Y:56759367-ATCGAACGG-GTGGAATCA | *** | ||||||
hg19:Y:58866446-CCCA-TCCG hg38:Y:56724422-TGGG-CGGA | *** | ||||||
hg19:Y:58893225-CATTCC-TCCTCA hg38:Y:56697641-GGAATG-TGAGGA | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: SAXZC* | 16000000 | 10000000 | 8300000 |
Used in age calculations | 16000000 | 10000000 | 8300000 |
Counts of SNPs | 17 | 10 |
* BED data not available. Using default values.
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