Benson

FTDNA: B58542

Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > P295[P] > M207[R] > M173[R1] > L146/M420[R1a] > M459 > M198 > M417 > Z645 > Z283 > Z282 > Z280

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B58542
2912521-T-C 3044480-T-C Y60493 YY+
6755392-C-A 6887351-C-A YP5000 YY+
7096790-G-A 7228749-G-A PR853 YY+
7400765-C-T 7532724-C-T Y62006 YY+
7527595-T-TA 7659554-T-TA +
7607768-C-G 7739727-C-G Y62240 YY+
7690474-G-C 7822433-G-C Y62394 YY+
7693201-C-T 7825160-C-T Y62399 YY+
8036651-G-A 8168610-G-A Y63012 YY+
8233363-C-T 8365322-C-T YP5001 YY+
8282871-C-T 8414830-C-T Y63445 YY+
8348047-G-A 8480006-G-A Y63559 YY+
8383796-T-A 8515755-T-A BY72187 YY+
8383797-C-T 8515756-C-T BY72188 YY+
9489381-C-T 9651772-C-T BY53915 +
14018562-C-T 11897856-C-T Y65769 YY+
14152026-G-T 12031320-G-T Y66059 YY+
14750905-T-TA 12638974-T-TA +
14980876-G-C 12868952-G-C Y67551 YY+
15133454-T-C 13021541-T-C Y67784 YY+
15903848-T-A 13791968-T-A Y69084 YY+
16294811-C-T 14182931-C-T Y69612 YY+
16358413-G-A 14246533-G-A Y69729 YY+
17109138-A-C 14997258-A-C BY112352 YY+
18246444-GAGAA-G 16134564-GAGAA-G 4×AGAA+
18852213-G-A 16740333-G-A Y74158 YY+
18883750-C-T 16771870-C-T Y74206 YY+
19089230-C-T 16977350-C-T Y74600 YY+
19169765-C-G 17057885-C-G Y74801 Y+
21551371-G-C 19389485-G-C Y76726 YY+
21620465-G-T 19458579-G-T Y76855 YY+
21729166-C-T 19567280-C-T Y77022 YY+
21885751-T-G 19723865-T-G Y77338 YY+
21903488-G-C 19741602-G-C Y77377 YY+
22263358-G-A 20101472-G-A BY214725 DYZ19 +
22665886-G-C 20504000-G-C YY+
22752948-T-C 20591062-T-C Y78597 YY+
23121406-G-A 20959520-G-A BY21853 YY+
23596847-C-T 21434961-C-T Y80154 YY+
24382694-T-C 22236547-T-C Y80603 Y+
28732231-G-A 26586084-G-A BY150944 Y+
14909165-A-G 12797232-A-G CTS3419 **
14909169-G-T 12797236-G-T CTS3420 **
10082929-C-T 10245320-C-T PF456 **
10066770-C-A 10229161-C-A **
10069823-T-C 10232214-T-C **
22360130-GT-G 20198244-GT-G DYZ19 **
13418530-A-C 11262854-A-C **
28803842-A-T 26657695-A-T FGC9650 **
10014984-A-T 10177375-A-T 27×T**
13631567-C-T 11475891-C-T **
15286844-CT-C 13174943-CT-C **
17339857-C-CA 15227977-C-CA 8×A**
13141948-C-T 10631434-C-T ***
13458125-A-C 11302449-A-C ***
13513143-A-C 11357467-A-C 9×C***
13810223-A-G 11689517-A-G ***
13846401-A-T 11725695-A-T ***
13856296-T-C 11735590-T-C FT328789 ***
13869013-A-T 11748307-A-T ***
22218327-T-TG 20056441-T-TG DYZ19 ***
22337907-C-A 20176021-C-A DYZ19 ***
22448327-C-T 20286441-C-T DYZ19 ***
22504142-G-T 20342256-G-T DYZ19 ***
22504149-T-A 20342263-T-A DYZ19 ***
22504192-T-A 20342306-T-A DYZ19 ***
13406371-T-A 11250695-T-A ***
13862169-C-T 11741463-C-T ***
13745343-C-T 11589667-C-T ***
13810228-A-C 11689522-A-C ***
13810240-C-T 11689534-C-T ***
13847326-T-A 11726620-T-A ***
23900736-T-C 21738850-T-C ***
13827914-T-A 11707208-T-A ***
13868715-G-A 11748009-G-A ***
26320860-C-T 24174713-C-T BY24871 P1_Y1 ***
9987562-A-G 10149953-A-G ***
10015116-T-C 10177507-T-C ***
10023120-T-C 10185511-T-C ***
13799023-G-A 11678317-G-A ***
13799025-A-G 11678319-A-G ***
13799032-A-G 11678326-A-G ***
13803218-G-C 11682512-G-C ***
13803231-A-C,T 11682525-A-C,T ***
13803232-A-T 11682526-A-T ***
13803247-C-A 11682541-C-A ***
13833621-G-T 11712915-G-T ***
13846444-C-A 11725738-C-A ***
13868880-T-C 11748174-T-C ***
13868890-A-G 11748184-A-G ***
58985555-AG-A 56839408-AG-A ***
13446511-T-TCGCA 11290835-T-TCGCA ***
13810209-G-T 11689503-G-T ***
22477663-C-T 20315777-C-T BY33232 DYZ19 ***
9987854-A-T 10150245-A-T ***
13745346-AATTGAATGTC-A 11589670-AATTGAATGTC-A ***
13841223-A-G 11720517-A-G ***
23900714-T-C 21738828-T-C ***
13658872-G-C 11503196-G-C ***
13799033-T-G 11678327-T-G ***
22361133-T-A 20199247-T-A DYZ19 ***
13472470-C-A 11316794-C-A ***
9953614-C-T 10116005-C-T S12856 ***
10015112-C-T 10177503-C-T ***
13412130-A-C 11256454-A-C ***
13412221-T-C 11256545-T-C ***
13820738-C-T 11700032-C-T BY156347 ***
13866274-T-C 11745568-T-C ***
22502181-A-G,T 20340295-A-G,T DYZ19 ***
26807330-TAC-T 24661183-TAC-T P1_g2 17×AC***
13810210-A-G 11689504-A-G ***
13810236-A-T 11689530-A-T ***
13868741-G-A 11748035-G-A ***
13818066-A-T 11697360-A-T ***
10016801-C-A 10179192-C-A ***
13830113-C-A 11709407-C-A FT121656 ***
13830224-G-A 11709518-G-A ***
13830271-A-G 11709565-A-G ***
13841423-C-T 11720717-C-T BY91135 ***
13457416-C-T 11301740-C-T ***
13841265-C-A 11720559-C-A BY91129 ***
58976722-C-A 56830575-C-A ***
10016080-TA-T 10178471-TA-T ***
13846689-C-G 11725983-C-G ***
13412164-G-A 11256488-G-A ***
22284069-A-G 20122183-A-G DYZ19 ***
13858593-G-T 11737887-G-T ***
13860213-TGGGAA-T,TGGAAT 11739507-TGGGAA-T,TGGAAT ***
13456259-AC-A,CC 11300583-AC-A,CC ***
13818078-G-A 11697372-G-A ***
13458126-A-T 11302450-A-T ***
13818088-G-C 11697382-G-C ***
13818092-C-T 11697386-C-T ***
13862168-A-G 11741462-A-G ***
13139503-G-GC 10628989-G-GC ***
9943009-G-A 10105400-G-A ***
13140500-C-T 10629986-C-T ***
13196089-G-A 11040413-G-A ***
13406383-C-CT 11250707-C-CT ***
13824853-A-T 11704147-A-T YP1453 ***
13799040-A-G 11678334-A-G ***
13799879-A-T 11679173-A-T ***
13841420-A-G 11720714-A-G ***
10016532-A-G 10178923-A-G ***
13846440-TG-T,TA 11725734-TG-T,TA ***
10039846-G-T 10202237-G-T ***
13412150-C-G 11256474-C-G ***
26320717-A-T 24174570-A-T P1_Y1 ***
13855560-G-T 11734854-G-T ***
13678227-G-A 11522551-G-A ***
13799916-T-G 11679210-T-G ***
22226934-T-C 20065048-T-C DYZ19 ***
10020442-GTAAA-G 10182833-GTAAA-G ***
13678245-C-A 11522569-C-A ***
13678266-G-C 11522590-G-C ***
22423076-T-C 20261190-T-C DYZ19 ***
9973658-T-C 10136049-T-C ***
58829145-A-G 56761726-T-C ***
13846911-T-A 11726205-T-A ***
13846915-T-G 11726209-T-G ***
58828455-C-A,G 56762416-G-C,T ***
13814122-C-G 11693416-C-G ***
13412320-A-G 11256644-A-G ***
13804110-A-T 11683404-A-T FT451725 ***
13846887-C-T 11726181-C-T ***
22218019-C-T 20056133-C-T DYZ19 ***
10016082-A-ATTTC 10178473-A-ATTTC ***
10016067-CTCT-C 10178458-CTCT-C ***
13847221-A-C 11726515-A-C ***
13136509-A-G 10625995-A-G ***
13445879-C-A,T 11290203-C-A,T ***
58985014-T-C 56838867-T-C ***
58979103-T-TTCCAC 56832956-T-TTCCAC ***
13854633-A-C 11733927-A-C ***
13855167-G-A 11734461-G-A ***
13196092-A-C 11040416-A-C ***
13798900-T-A 11678194-T-A BY25787 ***
13447221-CCGCTA-C,CCACTA 11291545-CCGCTA-C,CCACTA ***
10012961-A-C 10175352-A-C ***
13433618-TTT-A 11277942-TTT-A ***
10037247-C-TT 10199638-C-TT ***
10015098-C-T 10177489-C-T ***
10024385-T-TTC 10186776-T-TTC ***
13804063-G-C,T 11683357-G-C,T ***
10037329-T-C 10199720-T-C S13094 ***
10037331-A-T 10199722-A-T S13095 ***
10037337-C-T 10199728-C-T S13096 ***
10037339-C-T 10199730-C-T S13097 ***
13735029-C-T 11579353-C-T ***
9978536-G-A 10140927-G-A FGC45410 ***
13143784-GCACTGCACAT-CCACTG,G 10633270-GCACTGCACAT-CCACTG,G ***
13447259-T-TTCCAC 11291583-T-TTCCAC ***
13472461-C-G 11316785-C-G ***
9983963-CA-T 10146354-CA-T ***
13798884-T-A 11678178-T-A ***
13798887-T-G 11678181-T-G ***
26320731-A-G 24174584-A-G P1_Y1 ***
22504070-A-T 20342184-A-T DYZ19 ***
13798875-AC-A 11678169-AC-A ***
13798891-C-T 11678185-C-T ***
13798907-G-T 11678201-G-T ***
13798908-G-T 11678202-G-T ***
13798827-T-C 11678121-T-C BY25784 ***
13798842-T-G 11678136-T-G ***
13798858-G-A 11678152-G-A BY25786 ***
13859710-G-A 11739004-G-A ***
13678236-G-C 11522560-G-C ***
22226948-G-A 20065062-G-A DYZ19 ***
13140583-C-A 10630069-C-A ***
13824799-G-T 11704093-G-T ***
9978534-G-A 10140925-G-A ***
9993354-G-C 10155745-G-C ***
9993355-A-G 10155746-A-G ***
22295923-C-A 20134037-C-A DYZ19 ***
22295951-G-T 20134065-G-T DYZ19 ***
22295952-G-T 20134066-G-T DYZ19 ***
13488458-G-A 11332782-G-A ***
58974915-C-G 56828768-C-G ***
10020465-AAAGGAAAGGAAAGGAAAGGAAAGGAAAG-A 10182856-AAAGGAAAGGAAAGGAAAGGAAAGGAAAG-A ***
22301201-G-T 20139315-G-T DYZ19 ***
13472448-C-A 11316772-C-A ***
9943004-A-G 10105395-A-G ***
24924283-A-C 22778136-A-C g1 ***
22365710-C-T 20203824-C-T DYZ19 ***
24141018-T-C 21994871-T-C P3_b1 ***
25277342-C-T 23131195-C-T P2_r1 ***
28819272-A-G 26673125-A-G ***
13798765-G-A 11678059-G-A ***
13798816-A-T 11678110-A-T ***
13798819-G-A 11678113-G-A ***
13857855-T-A,G 11737149-T-A,G ***
13140523-C-A 10630009-C-A ***
13140546-T-C 10630032-T-C ***
13798761-G-T 11678055-G-T ***
10016097-TTCG-T,TTCC 10178488-TTCG-T,TTCC ***
18209106-GTAGA-G,GTAGG 16097226-GTAGA-G,GTAGG 12×TAGA***
16119959-T-TTTTC,TTTTCTTTC 14008079-T-TTTTC,TTTTCTTTC P8_Prx 12×TTTC***
13860228-C-A,T 11739522-C-A,T ***
22293411-TC-T,TG 20131525-TC-T,TG DYZ19 ***
6151876-C-T 6283835-C-T IR3_Dst ***
6231893-A-G 6363852-A-G IR3_Dst ***
6245346-C-A 6377305-C-A IR3_Dst ***
7478380-A-G 7610339-A-G IR1_L ***
16110402-A-C 13998522-A-C P8_Prx ***
17990782-C-T 15878902-C-T P7_Prx ***
19739340-A-AAACAAC,AAACAACAAC 17627460-A-AAACAAC,AAACAACAAC P5_Prx 13×AAC***
21902421-A-AAAACAAAC 19740535-A-AAAACAAAC 5×AAAC***
22219449-C-A 20057563-C-A DYZ19 ***
22225427-T-A 20063541-T-A DYZ19 ***
22237204-T-C 20075318-T-C DYZ19 ***
22237817-T-G 20075931-T-G DYZ19 ***
22251464-C-A 20089578-C-A DYZ19 ***
22251725-G-A 20089839-G-A DYZ19 ***
22251866-T-A 20089980-T-A DYZ19 ***
22268051-G-C 20106165-G-C DYZ19 ***
22303601-T-C 20141715-T-C DYZ19 ***
22306613-G-A 20144727-G-A DYZ19 ***
22310977-AGT-A 20149091-AGT-A DYZ19 ***
22339304-G-C 20177418-G-C DYZ19 ***
22345207-G-T 20183321-G-T ZS9789 DYZ19 ***
22427012-G-T 20265126-G-T DYZ19 ***
22444162-A-C 20282276-A-C BY219356 DYZ19 ***
24162561-G-C 22016414-G-C P3_b1 ***
24324703-G-A 22178556-G-A P3_t1 ***
24744678-G-A 22598531-G-A P3_b2 ***
24999095-A-G 22852948-A-G g1 ***
25028936-A-T 22882789-A-T g1 ***
25096448-G-GAAAA 22950301-G-GAAAA g1 20×GAAA***
25098147-T-G 22952000-T-G g1 ***
25253655-G-C 23107508-G-C P2_r1 ***
25322890-A-C 23176743-A-C P2_r1 ***
25888506-C-A 23742359-C-A P1_Y1 ***
25969507-A-C 23823360-A-C P1_Y1 ***
26046567-G-A 23900420-G-A P1_Y1 ***
26164626-C-G 24018479-C-G P1_Y1 ***
26200542-C-T 24054395-C-T P1_Y1 ***
26270988-T-C 24124841-T-C P1_Y1 ***
26887377-G-C 24741230-G-C P1_r3 ***
26890390-A-G 24744243-A-G P1_r3 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.