Treacy

FTDNA: 498614, FGC-BigY: JZW58, YFull-BigY: YF06455, YSEQ: 5912

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z255/S219 > Z16437 > A557 > A10886 > Z29008 > A10891

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
498614		FGC-BigY
JZW58		Manual
Edits
4862724-C-T 4994683-C-T PR4372 **
2789064-C-T 2921023-C-T **
4115830-G-A 4247789-G-A **
5179306-C-A 5311265-C-A **
6694284-A-G 6826243-A-G **
7204983-C-A 7336942-C-A BY17694 **
7862126-G-A 7994085-G-A **
8092075-C-A 8224034-C-A **
8720514-C-A 8852473-C-A **
9675376-G-A 9837767-G-A IR3_Prx **
10034247-C-A 10196638-C-A **
13200532-C-A 11044856-C-A **
13461565-T-A 11305889-T-A **
14250200-A-T 12129494-A-T BY17784 **
14366743-C-A 12246038-C-A **
15113663-C-A 13001750-C-A **
15557164-C-G 13445284-C-G **
16057102-T-A 13945222-T-A **
16559827-C-A 14447947-C-A **
16701821-C-A 14589941-C-A **
17470885-C-A 15359005-C-A **
19297932-C-A 17186052-C-A **
22659473-C-A 20497587-C-A **
22800291-C-A 20638405-C-A **
23184984-C-A 21023098-C-A **
28478888-A-G 26332741-A-G **
28775281-G-T 26629134-G-T **
22295848-C-G 20133962-C-G DYZ19 ***
18325701-ATT-A 16213821-ATT-A P6_Prx 27×T***
22431875-C-T 20269989-C-T DYZ19 ***
19930476-CT-C 17818596-CT-C P5_Prx 22×T***
22326076-A-T 20164190-A-T DYZ19 ***
58823383-C-T 56767488-G-A ***
13319979-C-T 11164303-C-T ***
9962531-AA-TC 10124922-AA-TC ***
13253393-TCGG-CCAGTTT 11097717-TCGG-CCAGTTT ***
22493800-G-C 20331914-G-C DYZ19 ***
22308542-T-C 20146656-T-C DYZ19 ***
10012138-AAAG-GAGA 10174529-AAAG-GAGA ***
13737778-C-G 11582102-C-G DYZ17 ***
13326719-G-A 11171043-G-A ***
13856980-A-T 11736274-A-T DYZ17 ***
24655973-T-G 22509826-T-G P3_b2 ***
25727405-C-T 23581258-C-T P1_b3 ***
26248010-C-A 24101863-C-A P1_Y1 ***
13485714-TA-CC 11330038-TA-CC ***
13856949-GTCGA-ATCAC 11736243-GTCGA-ATCAC DYZ17 ***
13856966-CGAA-TGAATGGAT 11736260-CGAA-TGAATGGAT DYZ17 ***
58977556-TG-CTTTTCA 56831409-TG-CTTTTCA ***
9929987-T-C 10092378-T-C ***
22335551-A-T 20173665-A-T DYZ19 ***
13729558-T-A 11573882-T-A DYZ17 ***
28315872-T-G 26169725-T-G P1_b4 ***
10044086-A-G 10206477-A-G ***
9202351-T-G 9364742-T-G ***
9311515-A-G 9473906-A-G ***
23667682-T-G 21505796-T-G ***
24714119-C-A 22567972-C-A P3_b2 ***
58844584-T-C 56746287-A-G ***
13480701-GCC-TCT 11325025-GCC-TCT ***
22337788-ACCTC-TCCTT 20175902-ACCTC-TCCTT DYZ19 ***
24866990-A-AT 22720843-A-AT IR1_R 11×T***
26880198-CT-C 24734051-CT-C P1_r3 25×T***
9344037-A-C 9506428-A-C ***
9943831-C-A 10106222-C-A ***
19721754-T-C 17609874-T-C P5_Prx ***
25919300-T-C 23773153-T-C P1_Y1 ***
13857864-ACTAA-TTGAT 11737158-ACTAA-TTGAT DYZ17 ***
13858028-TT-CG 11737322-TT-CG DYZ17 ***
24777087-A-C 22630940-A-C P3_b2 ***
26262185-C-T 24116038-C-T P1_Y1 21×T***
27872495-G-A 25726348-G-A P1_Y2 ***
13857849-TAGAATT-CAGAATG 11737143-TAGAATT-CAGAATG DYZ17 ***
19682558-TGGGT-GGGGG 17570678-TGGGT-GGGGG P5_Prx ***
13869448-T-A 11748742-T-A FT263926 DYZ17 ***
13461030-GATCA-AATCC 11305354-GATCA-AATCC ***
10014500-C-T 10176891-C-T ***
10014546-A-T 10176937-A-T ***
13433762-C-T 11278086-C-T ***
13433744-C-A 11278068-C-A ***
20654168-T-G 18492282-T-G P4_Prx ***
24336793-C-T 22190646-C-T P3_t1 20×T***
25472722-T-C 23326575-T-C P2_r2 ***
25727456-G-A 23581309-G-A P1_b3 ***
28293299-A-C 26147152-A-C P1_b4 ***
13700417-AC-GT 11544741-AC-GT DYZ17 ***
10044099-T-C 10206490-T-C ***
13302657-A-C 11146981-A-C ***
20716961-T-A 18555075-T-A P4_Prx ***
13488939-CTGGG-GTGGA 11333263-CTGGG-GTGGA ***
58981315-CA-AC 56835168-CA-AC ***
9540266-A-G 9702657-A-G IR3_Prx ***
22320495-A-G 20158609-A-G DYZ19 ***
25556354-A-T 23410207-A-T P1_gr1 ***
27016200-G-T 24870053-G-T P1_r4 ***
13315000-CA-TG 11159324-CA-TG ***
13487462-TTC-CTG 11331786-TTC-CTG ***
58827322-GTA-TTC 56763547-TAC-GAA ***
58990648-CTTCC-GTTGA 56844501-CTTCC-GTTGA ***
25231917-A-G 23085770-A-G P2_r1 ***
13737867-A-C 11582191-A-C DYZ17 ***
19187509-C-T 17075629-C-T ***
9365367-AGGC-GGGG 9527758-AGGC-GGGG ***
26981991-T-A 24835844-T-A P1_r4 ***
13740173-TGTCA-CCTCG 11584497-TGTCA-CCTCG DYZ17 ***
26912706-C-CA 24766559-C-CA P1_r3 14×A***
19693510-A-T 17581630-A-T P5_Prx 12×T***
27077200-G-T 24931053-G-T P1_r4 ***
23900760-CCTC-ACTT 21738874-CCTC-ACTT ***
58912415-T-C 56678456-A-G ***
16292605-C-T 14180725-C-T ***
22493766-G-C 20331880-G-C DYZ19 ***
26340884-A-C 24194737-A-C P1_Y1 ***
9529142-CTT-C 9691533-CTT-C IR3_Prx 15×T***
18447571-A-T 16335691-A-T P6_Dst ***
9944637-TG-T 10107028-TG-T ***
9951983-G-A 10114374-G-A Z11543 ***
23317884-A-T 21155998-A-T FGC81788 ***
22504529-G-T 20342643-G-T DYZ19 ***
22504451-G-T 20342565-G-T DYZ19 ***
58823430-A-G 56767441-T-C ***
22498933-C-G 20337047-C-G DYZ19 ***
22234785-T-A 20072899-T-A DYZ19 ***
13860704-G-T 11739998-G-T DYZ17 ***
9324835-C-T 9487226-C-T ***
13470655-GGTC-G 11314979-GGTC-G ***
22251448-G-A 20089562-G-A DYZ19 ***
13468046-TGT-AGG 11312370-TGT-AGG ***
8786764-T-C 8918723-T-C ***
13702153-G-T 11546477-G-T DYZ17 ***
23831325-T-G 21669439-T-G ***
26558033-A-C 24411886-A-C P1_g2 ***
9943775-G-GAAA 10106166-G-GAAA ***
13143432-TT-GC 10632918-TT-GC ***
24043817-C-A 21897670-C-A ***
27077143-A-T 24930996-A-T P1_r4 ***
18011030-T-G 15899150-T-G P7_Dst ***
24797590-A-C 22651443-A-C P3_b2 ***
25626741-C-A 23480594-C-A P1_b3 ***
13489632-CCCA-ACC 11333956-CCCA-ACC ***
14118259-C-T 11997553-C-T M9085 ***
10044052-T-C 10206443-T-C FT376844 ***
13461542-A-G 11305866-A-G ***
10044053-A-T 10206444-A-T ***
10044047-A-G 10206438-A-G ***
10086443-C-A 10248834-C-A ***
22457081-A-T 20295195-A-T DYZ19 ***
58988462-G-A 56842315-G-A ***
21141050-C-T 18979164-C-T ***
10044055-A-T 10206446-A-T ***
22203708-G-C 20041822-G-C Y20948 ***
2684462-T-C 2816421-T-C ***
2768186-A-T 2900145-A-T ***
2784395-T-C 2916354-T-C ***
2790390-C-A 2922349-C-A ***
2852729-C-G 2984688-C-G ***
2860053-C-T 2992012-C-T ***
2865768-A-T 2997727-A-T ***
3046379-T-C 3178338-T-C ***
3092025-C-A 3223984-C-A ***
3123139-C-A 3255098-C-A ***
3329247-C-A 3461206-C-A ***
3681238-G-T 3813197-G-T ***
4269296-C-A 4401255-C-A ***
4889268-C-A 5021227-C-A ***
5426470-C-T 5558429-C-T ***
5471985-A-G 5603944-A-G ***
5495142-T-C 5627101-T-C ***
5636105-C-A 5768064-C-A ***
5864074-G-A 5996033-G-A ***
5957207-T-A 6089166-T-A ***
5966198-A-G 6098157-A-G ***
6138909-G-T 6270868-G-T IR3_Dst ***
6179581-C-T 6311540-C-T IR3_Dst ***
6240082-C-A 6372041-C-A IR3_Dst ***
6384174-G-T 6516133-G-T ***
6534781-C-A 6666740-C-A ***
6709177-A-T 6841136-A-T ***
6770885-C-T 6902844-C-T ***
6920687-C-A 7052646-C-A ***
7021782-C-A 7153741-C-A ***
7081319-T-G 7213278-T-G ***
7092460-C-A 7224419-C-A ***
7214397-A-G 7346356-A-G ***
7499786-G-T 7631745-G-T IR1_L ***
7579735-G-A 7711694-G-A ***
7986030-C-T 8117989-C-T ***
7994314-A-G 8126273-A-G ***
8074863-G-T 8206822-G-T ***
8660352-C-A 8792311-C-A ***
8698720-C-A 8830679-C-A ***
8698874-G-A 8830833-G-A ***
8786749-A-C 8918708-A-C ***
9010270-G-T 9172661-G-T ***
9045078-C-A 9207469-C-A ***
9127506-C-T 9289897-C-T 22×T***
9147049-G-T 9309440-G-T ***
9227302-C-A 9389693-C-A ***
9233506-G-T 9395897-G-T ***
9234908-A-C 9397299-A-C ***
9298166-C-A 9460557-C-A ***
9301417-C-A 9463808-C-A ***
9307121-T-A 9469512-T-A ***
9325085-A-G 9487476-A-G ***
9351240-G-A 9513631-G-A ***
9365725-T-C 9528116-T-C ***
9365731-T-C 9528122-T-C ***
9365733-T-G 9528124-T-G ***
9365737-A-G 9528128-A-G ***
9540290-G-T 9702681-G-T IR3_Prx ***
9564481-C-T 9726872-C-T IR3_Prx ***
9564495-T-G 9726886-T-G IR3_Prx ***
9564499-T-G 9726890-T-G IR3_Prx ***
9591998-C-A 9754389-C-A IR3_Prx ***
9674047-G-T 9836438-G-T IR3_Prx ***
9714764-C-T 9877155-C-T IR3_Prx ***
9725573-A-G 9887964-A-G IR3_Prx ***
9929957-G-T 10092348-G-T ***
9943816-C-T 10106207-C-T ***
9951303-C-T 10113694-C-T F18054 ***
9952033-A-T 10114424-A-T ***
10009483-C-A 10171874-C-A ***
10010510-G-T 10172901-G-T ***
10044069-C-A 10206460-C-A ***
10044070-C-A 10206461-C-A ***
10044088-G-A 10206479-G-A ***
10050919-C-A 10213310-C-A ***
10086434-C-G 10248825-C-G ***
10086448-G-A 10248839-G-A ***
10087016-C-A 10249407-C-A ***
10088684-C-G 10251075-C-G ***
13282699-C-G 11127023-C-G ***
13309699-C-T 11154023-C-T ***
13317353-T-A 11161677-T-A ***
13329092-G-A 11173416-G-A ***
13394911-A-G 11239235-A-G ***
13441947-C-A 11286271-C-A ***
13461541-C-T 11305865-C-T ***
13476233-C-A 11320557-C-A ***
13617813-C-A 11462137-C-A ***
13733688-G-T 11578012-G-T DYZ17 ***
13736413-C-A 11580737-C-A DYZ17 ***
13858747-A-G 11738041-A-G DYZ17 ***
13865896-A-T 11745190-A-T DYZ17 ***
14022018-C-A 11901312-C-A ***
14050727-T-C 11930021-T-C ***
14065641-C-A 11944935-C-A ***
14149412-C-A 12028706-C-A ***
14195328-G-T 12074622-G-T ***
14233396-T-C 12112690-T-C ***
14234682-C-A 12113976-C-A ***
14250116-C-A 12129410-C-A ***
14272976-T-G 12152270-T-G ***
14273999-G-T 12153293-G-T ***
14339457-C-A 12218752-C-A ***
14396493-C-A 12275789-C-A ***
14639302-C-A 12527371-C-A ***
14774186-C-A 12662255-C-A ***
14815965-A-G 12704036-A-G ***
14847021-A-C 12735087-A-C ***
14988800-C-T 12876866-C-T ***
15215963-C-A 13104049-C-A ***
15370836-C-A 13258956-C-A ***
15450193-C-A 13338313-C-A ***
15477268-G-A 13365388-G-A ***
15592748-C-A 13480868-C-A ***
15762324-G-T 13650444-G-T ***
15762951-G-T 13651071-G-T ***
15774199-C-A 13662319-C-A ***
15866724-C-A 13754844-C-A ***
15928596-C-A 13816716-C-A ***
15957896-C-A 13846016-C-A ***
16037254-T-C 13925374-T-C ***
16056126-C-T 13944246-C-T ***
16113368-T-G 14001488-T-G P8_Prx ***
16118198-T-G 14006318-T-G P8_Prx ***
16221568-T-C 14109688-T-C ***
16302389-T-C 14190509-T-C ***
16405545-C-A 14293665-C-A FTB48666 ***
16413590-C-A 14301710-C-A ***
16422855-G-C 14310975-G-C ***
16476386-A-G 14364506-A-G ***
16572701-C-A 14460821-C-A ***
16598611-A-C 14486731-A-C ***
16618875-C-A 14506995-C-A ***
16625623-T-C 14513743-T-C ***
17103545-G-T 14991665-G-T ***
17226275-G-A 15114395-G-A ***
17367799-A-G 15255919-A-G ***
17584324-G-C 15472444-G-C ***
17716901-T-C 15605021-T-C ***
18136200-G-A 16024320-G-A ***
18190345-A-G 16078465-A-G ***
18190401-T-A 16078521-T-A ***
18336397-T-A 16224517-T-A P6_Prx ***
18370845-A-T 16258965-A-T P6_Prx ***
18447617-A-T 16335737-A-T P6_Dst ***
18645985-G-A 16534105-G-A ***
18692554-C-A 16580674-C-A ***
18743385-C-T 16631505-C-T ***
18766813-G-A 16654933-G-A ***
18890871-C-T 16778991-C-T ***
18906517-C-T 16794637-C-T ***
18930578-T-G 16818698-T-G ***
18991111-G-A 16879231-G-A ***
19088150-A-G 16976270-A-G ***
19537802-C-A 17425922-C-A ***
19593651-C-T 17481771-C-T P5_Prx ***
19596972-C-A 17485092-C-A P5_Prx ***
19601953-C-G 17490073-C-G P5_Prx ***
19616609-A-T 17504729-A-T P5_Prx ***
19679301-G-T 17567421-G-T P5_Prx ***
19764572-T-C 17652692-T-C P5_Prx ***
19892976-G-T 17781096-G-T P5_Prx ***
19943716-T-G 17831836-T-G P5_Prx ***
20243527-T-A 18081641-T-A P5_Dst ***
20447430-T-G 18285544-T-G P5_Dst ***
20645953-C-T 18484067-C-T P4_Prx ***
20654147-T-G 18492261-T-G P4_Prx ***
20751042-G-A 18589156-G-A P4_Prx 13×A***
20865607-C-A 18703721-C-A P4_Dst ***
20947236-G-T 18785350-G-T P4_Dst ***
21084628-T-A 18922742-T-A ***
21171897-C-A 19010011-C-A ***
21321739-C-A 19159853-C-A ***
21473774-C-A 19311888-C-A ***
21770051-G-A 19608165-G-A ***
21920673-G-T 19758787-G-T ***
22092922-C-A 19931036-C-A ***
22127948-T-C 19966062-T-C ***
22207267-C-A 20045381-C-A ***
22295859-A-T 20133973-A-T DYZ19 ***
22329072-A-T 20167186-A-T DYZ19 ***
22364774-G-A 20202888-G-A DYZ19 ***
22430105-T-A 20268219-T-A DYZ19 ***
22434035-G-T 20272149-G-T DYZ19 ***
22490114-G-A 20328228-G-A DYZ19 ***
22503993-G-T 20342107-G-T DYZ19 ***
22504526-C-A 20342640-C-A DYZ19 ***
22520585-G-A 20358699-G-A FT374971 ***
22615209-C-T 20453323-C-T ***
22788848-T-C 20626962-T-C ***
22798045-T-A 20636159-T-A ***
22811030-C-A 20649144-C-A ***
22991279-C-A 20829393-C-A ***
23231413-T-A 21069527-T-A ***
23259161-G-T 21097275-G-T FT389935 ***
23360740-C-A 21198854-C-A ***
23360861-T-C 21198975-T-C ***
23512844-G-T 21350958-G-T ***
23723544-C-A 21561658-C-A 27×AT***
23785115-A-T 21623229-A-T ***
24043202-A-G 21897055-A-G ***
24043835-A-G 21897688-A-G ***
24043879-T-A 21897732-T-A ***
24330263-G-A 22184116-G-A P3_t1 ***
24445450-C-T 22299303-C-T ***
24458560-C-A 22312413-C-A ***
24582352-C-T 22436205-C-T P3_t2 17×T***
24686521-G-T 22540374-G-T P3_b2 ***
24695964-C-T 22549817-C-T P3_b2 ***
24696130-G-C 22549983-G-C P3_b2 ***
24797622-A-C 22651475-A-C P3_b2 ***
24844065-A-C 22697918-A-C IR1_R ***
24878137-G-T 22731990-G-T g1 ***
24885676-A-G 22739529-A-G g1 ***
24934272-G-A 22788125-G-A g1 ***
24934296-G-A 22788149-G-A g1 ***
24983292-T-G 22837145-T-G g1 ***
25124216-A-C 22978069-A-C g1 ***
25232275-T-C 23086128-T-C P2_r1 ***
25273877-G-T 23127730-G-T P2_r1 ***
25434012-G-T 23287865-G-T P2_r2 ***
25434042-A-G 23287895-A-G P2_r2 ***
25434062-G-A 23287915-G-A P2_r2 ***
25453412-C-A 23307265-C-A P2_r2 ***
25556298-A-T 23410151-A-T P1_gr1 ***
25560093-G-T 23413946-G-T P1_gr1 ***
25592407-T-A 23446260-T-A P1_gr1 ***
25592416-C-A 23446269-C-A P1_gr1 ***
25602261-G-A 23456114-G-A P1_gr1 ***
25654431-T-C 23508284-T-C P1_b3 ***
25677305-G-T 23531158-G-T P1_b3 ***
25827338-A-G 23681191-A-G P1_b3 ***
25845323-C-T 23699176-C-T P1_b3 ***
25873498-C-T 23727351-C-T P1_Y1 ***
25908524-G-T 23762377-G-T P1_Y1 ***
26101447-C-A 23955300-C-A P1_Y1 ***
26254947-C-A 24108800-C-A P1_Y1 ***
26316357-G-T 24170210-G-T P1_Y1 ***
26383263-C-A 24237116-C-A P1_Y1 ***
26423097-G-T 24276950-G-T P1_Y1 ***
26463221-C-T 24317074-C-T P1_Y1 ***
26505350-T-G 24359203-T-G P1_Y1 ***
26505360-T-G 24359213-T-G P1_Y1 ***
26505373-T-A 24359226-T-A P1_Y1 ***
26605183-A-T 24459036-A-T P1_g2 ***
26631885-T-G 24485738-T-G P1_g2 ***
26748798-A-G 24602651-A-G P1_g2 ***
26761021-G-T 24614874-G-T P1_g2 ***
26809364-T-C 24663217-T-C P1_g2 ***
26887353-G-T 24741206-G-T P1_r3 ***
26887368-A-G 24741221-A-G P1_r3 ***
26887375-T-G 24741228-T-G P1_r3 ***
26897756-C-A 24751609-C-A P1_r3 ***
26965262-T-G 24819115-T-G P1_r3 ***
26981927-T-G 24835780-T-G P1_r4 ***
26992964-G-A 24846817-G-A P1_r4 ***
27016192-A-G 24870045-A-G P1_r4 ***
27033181-C-T 24887034-C-T P1_r4 ***
27056861-G-T 24910714-G-T P1_r4 ***
27077128-G-T 24930981-G-T P1_r4 ***
27077150-G-A 24931003-G-A P1_r4 ***
27095674-G-A 24949527-G-A P1_r4 ***
27095777-G-A 24949630-G-A P1_r4 ***
27162097-G-T 25015950-G-T P1_g3 ***
27162357-C-A 25016210-C-A P1_g3 ***
27169266-G-T 25023119-G-T P1_g3 ***
27194800-C-A 25048653-C-A P1_g3 ***
27295448-C-A 25149301-C-A P1_g3 ***
27424138-G-A 25277991-G-A P1_g3 ***
27497071-C-T 25350924-C-T P1_Y2 ***
27576195-G-T 25430048-G-T P1_Y2 ***
27633976-G-T 25487829-G-T P1_Y2 ***
27641739-G-A 25495592-G-A P1_Y2 ***
27872534-G-A 25726387-G-A P1_Y2 ***
27968414-C-T 25822267-C-T P1_Y2 ***
27968421-C-T 25822274-C-T P1_Y2 ***
27968430-A-C 25822283-A-C P1_Y2 ***
27968444-C-T 25822297-C-T P1_Y2 ***
28005688-A-T 25859541-A-T P1_Y2 ***
28170640-G-T 26024493-G-T P1_b4 ***
28204111-C-T 26057964-C-T P1_b4 ***
28204142-G-C 26057995-G-C P1_b4 ***
28293287-A-C 26147140-A-C P1_b4 ***
28293290-A-C 26147143-A-C P1_b4 ***
28310939-T-C 26164792-T-C P1_b4 ***
28315879-A-G 26169732-A-G P1_b4 ***
28315944-G-A 26169797-G-A P1_b4 ***
28315950-C-T 26169803-C-T P1_b4 ***
28542981-A-G 26396834-A-G ***
28775369-C-A 26629222-C-A FT461512 ***
58822324-T-A 56768547-A-T ***
58823431-C-T 56767440-G-A ***
58823510-A-T 56767361-T-A ***
58826951-A-C 56763920-T-G ***
58830298-C-A 56760573-G-T ***
58855326-T-G 56735545-A-C ***
58912457-C-G 56678414-G-C ***
58985046-G-A 56838899-G-A ***
58985073-C-G 56838926-C-G ***
58989599-G-T 56843452-G-T ***
58972026-CC-AT 56825879-CC-AT ***
6403654-AC-GG 6535613-AC-GG ***
13857969-CCT-TCA 11737263-CCT-TCA DYZ17 ***
9351210-CTATG-ATATA 9513601-CTATG-ATATA ***
9944144-AC-G 10106535-AC-G ***
10055372-TG-CA 10217763-TG-CA ***
10055401-TG-CA 10217792-TG-CA ***
10055451-TGC-AGT 10217842-TGC-AGT ***
10061586-CAAACT-AAAATA 10223977-CAAACT-AAAATA ***
13140583-CATTAA-AATTCC 10630069-CATTAA-AATTCC ***
13143330-CATA-TAT 10632816-CATA-TAT ***
13143366-GCTCTGTCACT-ACTGTCACACC 10632852-GCTCTGTCACT-ACTGTCACACC ***
13437221-C-CCT 11281545-C-CCT ***
13437248-GG-AA 11281572-GG-AA ***
13461541-CA-TG 11305865-CA-TG ***
13471169-AG-CA 11315493-AG-CA ***
13480739-GA-AT 11325063-GA-AT ***
13858009-CGGAATC-TGCAATG 11737303-CGGAATC-TGCAATG DYZ17 ***
13858769-CGAAT-TGAAC 11738063-CGAAT-TGAAC DYZ17 ***
13860364-AGAT-GAAA 11739658-AGAT-GAAA DYZ17 ***
14080066-ATATATATATATATATATATAT-A 11959360-ATATATATATATATATATATAT-A ***
14604590-C-CTT 12492792-C-CTT 21×T***
17081259-AT-A 14969379-AT-A ***
18321273-CTG-TTT 16209393-CTG-TTT P6_Prx ***
18447504-C-CA 16335624-C-CA P6_Dst 8×A***
19696447-AG-A 17584567-AG-A P5_Prx ***
20989230-GT-AA 18827344-GT-AA P4_Dst ***
21623838-G-TT 19461952-G-TT ***
22311220-AGAG-TGAC 20149334-AGAG-TGAC DYZ19 ***
22367474-TAG-GAT 20205588-TAG-GAT DYZ19 ***
24575897-TTTTG-T 22429750-TTTTG-T P3_t2 ***
25093550-AGGC-GGGG 22947403-AGGC-GGGG g1 ***
25417487-CTTGA-TTTGT 23271340-CTTGA-TTTGT P2_r2 ***
25466390-AGTTTG-A 23320243-AGTTTG-A P2_r2 ***
26912535-CAA-C 24766388-CAA-C P1_r3 17×A***
27062951-AGTA-G 24916804-AGTA-G P1_r4 ***
27546738-CTTTC-TTTTT 25400591-CTTTC-TTTTT P1_Y2 ***
27679491-A-ATG 25533344-A-ATG P1_Y2 20×TG***
27958812-AAAAC-A 25812665-AAAAC-A P1_Y2 4×AAAC***
28315906-ATGTT-TTGTG 26169759-ATGTT-TTGTG P1_b4 ***
58823424-TG-GA 56767446-CA-TC ***
58989992-ATTG-TTTT 56843845-ATTG-TTTT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual7152524-G-A7284483-G-AYFull