Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > L513/S215/DF1 > S6365

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
17075650-A-G 14963770-A-G FGC18489 YY+
9151604-T-A 9313995-T-A FGC18473 Y+
13286466-G-A 11130790-G-A FGC18476 +
21583647-C-T 19421761-C-T FGC18498 Y+
21934597-G-A 19772711-G-A FGC18499 YY+
22038275-T-C 19876389-T-C FGC18500 YY+
23280319-G-A 21118433-G-A CTS11795 YY+
22215912-C-A 20054026-C-A FGC18501 Y+
9761926-G-A 9924317-G-A FGC18475 Y+
17111879-T-C 14999999-T-C FGC18490 YY+
9162389-G-T 9324780-G-T FGC18474 +
3787077-T-A 3919036-T-A FGC18456 +
4899270-T-C 5031229-T-C FGC18458 +
6788765-G-A 6920724-G-A FGC18460 YY+
9077829-A-G 9240220-A-G FGC18472 +
6842250-T-A 6974209-T-A FGC18461 YY+
6929392-G-A 7061351-G-A FGC18462 Y+
6934687-G-A 7066646-G-A FGC12955 YY+
7133565-A-G 7265524-A-G FGC18463 YY+
7300467-A-C 7432426-A-C FGC18464 Y+
7772381-A-T 7904340-A-T FGC18465 YY+
8075645-A-C 8207604-A-C FGC18466 Y+
8133936-A-C 8265895-A-C FGC18467 YY+
8210580-C-A 8342539-C-A FGC18468 YY+
8438012-G-A 8569971-G-A FGC18469 YY+
8502128-T-C 8634087-T-C FGC18470 YY+
21376980-A-G 19215094-A-G FGC18497 Y+
9016264-G-A 9178655-G-A FGC18471 Y+
13509565-A-G 11353889-A-G FGC18477 +
15912449-T-C 13800569-T-C FGC18484 YY+
17031833-G-A 14919953-G-A FGC18488 YY+
23815745-C-A 21653859-C-A FGC18504 Y+
23803231-T-A 21641345-T-A FGC18503 Y+
23559513-T-C 21397627-T-C FGC18502 YY+
16707167-T-C 14595287-T-C FGC18487 Y+
18135599-G-T 16023719-G-T FGC18491 Y+
16277160-G-A 14165280-G-A FGC18486 YP4014 YY+
16196473-A-G 14084593-A-G FGC18485 YY+
18229355-A-G 16117475-A-G FGC18493 +
10014355-CTG-C 10176746-CTG-C FGC18508 +
18604438-G-C 16492558-G-C FGC18494 YY+
19095613-C-T 16983733-C-T FGC18495 YY+
15671309-C-T 13559429-C-T FGC18483 Y+
13530503-C-A 11374827-C-A FGC18478 +
15523930-T-A 13412050-T-A FGC18482 YY+
15500533-G-C 13388653-G-C FGC18481 YY+
14758987-G-A 12647056-G-A FGC18480 Y+
13906119-C-T 11785413-C-T FGC18479 Y+
19194063-C-A 17082183-C-A FGC18496 YY+
3758607-TC-T 3890566-TC-T FGC18506 +
28371973-T-C 26225826-T-C FGC18505 P1_gr2 *
18216709-A-C 16104829-A-C FGC18492 YY*
8103470-GT-G 8235429-GT-G FGC18507 *
22298048-G-T 20136162-G-T DYZ19 **
13246495-C-T 11090819-C-T **
13659932-G-A 11504256-G-A **
18126522-T-TA 16014642-T-TA 8×A**
17764068-A-AAATT 15652188-A-AAATT 7×AATT**
5632637-C-T 5764596-C-T **
22463054-T-G 20301168-T-G BY52866 DYZ19 **
58971026-T-C 56824879-T-C **
22442072-G-T 20280186-G-T DYZ19 **
22463053-C-A 20301167-C-A DYZ19 **
22971931-A-G 20810045-A-G **
13531733-G-A 11376057-G-A **
26400199-A-T 24254052-A-T P1_Y1 ***
9932701-GT-AC 10095092-GT-AC ***
26178004-A-T 24031857-A-T P1_Y1 ***
3031488-G-GT 3163447-G-GT ***
58835796-T-C 56755075-A-G ***
5017619-ACA-G 5149578-ACA-G ***
5094042-C-CT 5226001-C-CT 27×T***
58831532-G-C 56759339-C-G ***
9221716-CC-TA 9384107-CC-TA ***
58830741-A-T 56760130-T-A ***
9939960-TAAAG-AAAAA 10102351-TAAAG-AAAAA ***
26444214-C-T 24298067-C-T P1_Y1 ***
58820453-A-T 56770418-T-A ***
4176767-C-CA 4308726-C-CA 12×A***
26254741-C-A 24108594-C-A P1_Y1 ***
27637406-T-C 25491259-T-C P1_Y2 ***
27637356-C-A 25491209-C-A P1_Y2 ***
27409355-G-T 25263208-G-T P1_g3 ***
27282574-G-A 25136427-G-A P1_g3 ***
27243202-T-C 25097055-T-C P1_g3 ***
27022205-A-G 24876058-A-G P1_r4 ***
26928596-T-G 24782449-T-G P1_r3 ***
2860458-G-GTTTTTT 2992417-G-GTTTTTT 18×T***
58838415-T-A 56752456-A-T ***
22272937-TA-T 20111051-TA-T DYZ19 ***
58910273-A-C 56680598-T-G ***
58874683-A-C 56716188-T-G ***
58879298-G-A 56711573-C-T ***
58882513-C-A 56708358-G-T ***
58874296-A-G 56716575-T-C ***
58882558-G-C 56708313-C-G ***
58883892-C-A 56706979-G-T ***
58883893-C-A 56706978-G-T ***
58907158-A-T 56683713-T-A ***
58907167-C-T 56683704-G-A ***
58909291-G-A 56681580-C-T ***
58909366-C-A 56681505-G-T ***
58910238-T-C 56680633-A-G ***
58910250-A-T 56680621-T-A ***
58874283-G-C 56716588-C-G ***
58838370-C-A 56752501-G-T ***
58867587-A-G 56723284-T-C ***
58867556-C-T 56723315-G-A ***
58866909-T-C 56723962-A-G ***
58851799-C-G 56739072-G-C ***
58851785-A-G 56739086-T-C ***
58851754-C-G 56739117-G-C ***
58913012-C-T 56677859-G-A ***
58913014-A-T 56677857-T-A ***
58840702-C-A 56750169-G-T ***
58913548-G-C 56677323-C-G ***
58840316-C-T 56750555-G-A ***
58874684-A-C 56716187-T-G ***
58875196-T-A 56715675-A-T ***
13703210-CAA-AAATATT 11547534-CAA-AAATATT ***
10090738-A-GC 10253129-A-GC ***
22723404-G-AAAAAAAA 20561518-G-AAAAAAAA 12×A***
26325626-CG-C 24179479-CG-C P1_Y1 ***
25592896-CTCTC-A 23446749-CTCTC-A P1_gr1 ***
25312586-T-TAAAAAA 23166439-T-TAAAAAA P2_r1 25×A***
24387151-C-CCA 22241004-C-CCA ***
24283332-T-TAAAAAA 22137185-T-TAAAAAA P3_t1 27×A***
22802901-GCTGG-TTTTT 20641015-GCTGG-TTTTT ***
22783159-CAAAAAAAA-C 20621273-CAAAAAAAA-C 17×A***
22723386-C-CAAAAAAA 20561500-C-CAAAAAAA 17×A***
27282554-TAA-T 25136407-TAA-T P1_g3 ***
22540538-G-GTA 20378652-G-GTA 17×TA***
22499323-TG-GA 20337437-TG-GA DYZ19 ***
22463053-CT-AG 20301167-CT-AG DYZ19 ***
22421839-GTT-TTG 20259953-GTT-TTG DYZ19 ***
22420937-CT-C 20259051-CT-C DYZ19 ***
27282531-AAGACA-GAGATG 25136384-AAGACA-GAGATG P1_g3 ***
27481929-C-CT 25335782-C-CT P1_Y2 9×T***
22364944-AT-TC 20203058-AT-TC DYZ19 ***
58979320-CTCCACTCCAT-C 56833173-CTCCACTCCAT-C ***
58909337-GTA-TTC 56681532-TAC-GAA ***
58870547-CATTGTC-AATT 56720318-GACAATG-AATT ***
58867576-CAGTCC-GAGTAA 56723290-GGACTG-TTACTC ***
58831567-TA-GT 56759303-TA-AC ***
27824063-G-GT 25677916-G-GT P1_Y2 10×T***
58831551-TCATTC-CGATGA 56759315-GAATGA-TCATCG ***
58831538-TTTCC-ATTCA 56759329-GGAAA-TGAAT ***
58831517-GAT-TA 56759352-ATC-TA ***
28747705-A-ATTTT 26601558-A-ATTTT 27×T***
28686422-T-TTTAA 26540275-T-TTTAA ***
28474965-CAAA-C 26328818-CAAA-C 18×A***
28253524-C-CAA 26107377-C-CAA P1_b4 ***
27998485-CA-C 25852338-CA-C P1_Y2 30×A***
22420772-GGTTC-TGTTA 20258886-GGTTC-TGTTA DYZ19 ***
13132842-C-CAAATAAAAAA 10622328-C-CAAATAAAAAA 20×A***
26038266-C-G 23892119-C-G P1_Y1 ***
14990902-GC-G 12878987-GC-G ***
14613459-C-CTTTTTTT 12501657-C-CTTTTTTT 26×T***
14008777-CG-AAAAA 11888071-CG-AAAAA ***
13703555-TGGAATGG-T 11547879-TGGAATGG-T ***
13703533-CCTGC-ATTGG 11547857-CCTGC-ATTGG ***
13703223-CG-AT 11547547-CG-AT ***
13703181-AAG-CAA 11547505-AAG-CAA ***
13703173-GT-AA 11547497-GT-AA ***
13703159-CGGAG-ACGAA 11547483-CGGAG-ACGAA ***
13483828-GGAG-AGAA 11328152-GGAG-AGAA ***
13470942-TATC-GATT 11315266-TATC-GATT ***
13464632-TG-CA 11308956-TG-CA ***
16729172-G-GTTTTT 14617292-G-GTTTTT 22×T***
17130400-C-CTTTTT 15018520-C-CTTTTT 21×T***
22352486-AGAG-TGAGT 20190600-AGAG-TGAGT DYZ19 ***
22235017-GAG-CAA 20073131-GAG-CAA DYZ19 ***
22341149-CTTCTC-GATCTT 20179263-CTTCTC-GATCTT DYZ19 ***
22297316-AC-GG 20135430-AC-GG DYZ19 ***
22292697-GGT-TGA 20130811-GGT-TGA DYZ19 ***
22289703-TTGAGC-GTGAGT 20127817-TTGAGC-GTGAGT DYZ19 ***
22273911-TTCT-CTCA 20112025-TTCT-CTCA DYZ19 ***
22251516-TCAA-ACCT 20089630-TCAA-ACCT DYZ19 ***
22235006-CCTGC-TCTGT 20073120-CCTGC-TCTGT DYZ19 ***
17189355-G-GAAAAAAAAA 15077475-G-GAAAAAAAAA 19×A***
22227892-AAC-CTA 20066006-AAC-CTA DYZ19 ***
21853677-C-CAAAA 19691791-C-CAAAA 43×A***
20118672-CCTCGGGCAT-C 18006792-CCTCGGGCAT-C P5_Dst ***
19744991-ATTTTTTT-A 17633111-ATTTTTTT-A P5_Prx 23×T***
19740991-C-CAAAAA 17629111-C-CAAAAA P5_Prx ***
19437421-AGAGG-A 17325541-AGAGG-A 4×GAGG***
19318178-C-CTTT 17206298-C-CTTT 28×T***
26102028-T-A 23955881-T-A P1_Y1 ***
22361156-G-T 20199270-G-T DYZ19 ***
25990622-G-T 23844475-G-T P1_Y1 ***
13105515-A-T 10595001-A-T ***
13222626-G-A 11066950-G-A ***
13110931-C-T 10600417-C-T ***
13109923-C-T 10599409-C-T ***
13109899-G-T 10599385-G-T ***
13105534-G-C 10595020-G-C ***
13105532-C-A 10595018-C-A ***
13105506-G-A 10594992-G-A ***
13222664-A-G 11066988-A-G ***
10092392-T-A 10254783-T-A ***
9932756-T-G 10095147-T-G ***
9342872-C-A 9505263-C-A ***
9342865-T-G 9505256-T-G ***
9342742-C-T 9505133-C-T ***
9191016-T-G 9353407-T-G ***
13222628-A-G 11066952-A-G ***
13223593-G-A 11067917-G-A ***
3316609-C-A 3448568-C-A ***
13703159-C-A 11547483-C-A ***
13703255-T-C 11547579-T-C BY3402 ***
13703238-C-A 11547562-C-A ***
13703199-C-A 11547523-C-A ***
13703198-T-A 11547522-T-A ***
13703183-G-A 11547507-G-A ***
13703173-G-A 11547497-G-A ***
13698680-A-G 11543004-A-G ***
13246481-A-G 11090805-A-G ***
13487966-G-C 11332290-G-C ***
13479273-C-T 11323597-C-T ***
13470945-C-T 11315269-C-T ***
13470935-T-G 11315259-T-G ***
13470915-A-T 11315239-A-T ***
13308008-G-T 11152332-G-T ***
13246486-T-A 11090810-T-A ***
22420794-C-A 20258908-C-A DYZ19 ***
13470927-T-C 11315251-T-C ***
13703271-T-C 11547595-T-C ***
23702223-G-GT 21540337-G-GT 14×T***
22232040-C-A 20070154-C-A BY10784 DYZ19 ***
22248409-G-GA 20086523-G-GA DYZ19 ***
22248406-TC-T 20086520-TC-T DYZ19 ***
22364601-A-T 20202715-A-T DYZ19 ***
22360595-T-G 20198709-T-G DYZ19 ***
13110880-G-T 10600366-G-T ***
22365977-GGTGG-TGTCA 20204091-GGTGG-TGTCA DYZ19 ***
58838400-C-A 56752471-G-T ***
58898602-T-G 56692269-A-C ***
28582676-G-A 26436529-G-A ***
22496212-A-G 20334326-A-G DYZ19 ***
22366688-G-T 20204802-G-T DYZ19 ***
22297347-C-A 20135461-C-A DYZ19 ***
22496198-T-G 20334312-T-G DYZ19 ***
22257039-A-G 20095153-A-G DYZ19 ***
22480951-G-A 20319065-G-A DYZ19 ***
13488439-TG-CA 11332763-TG-CA ***
58882549-A-C 56708322-T-G ***
22273914-T-A 20112028-T-A DYZ19 ***
13467784-A-G 11312108-A-G ***
22251481-A-C 20089595-A-C DYZ19 ***
58864113-G-C 56726758-C-G ***
22273963-T-A 20112077-T-A DYZ19 ***
28237948-A-C 26091801-A-C P1_b4 ***
13222673-C-G 11066997-C-G ***
22273911-T-C 20112025-T-C DYZ19 ***
13467676-T-A 11312000-T-A ***
13392858-A-C 11237182-A-C ***
13467703-A-C 11312027-A-C ***
13434702-T-A 11279026-T-A ***
13258819-T-C 11103143-T-C ***
13222785-A-T 11067109-A-T ***
22495769-CTCATC-TCACTT 20333883-CTCATC-TCACTT DYZ19 ***
2810366-A-ATTTTT 2942325-A-ATTTTT 23×T***
13703260-T-A 11547584-T-A ***
13703330-T-G 11547654-T-G ***
25587281-A-C 23441134-A-C P1_gr1 ***
22344713-A-T 20182827-A-T DYZ19 ***
22364896-G-C 20203010-G-C DYZ19 ***
22361357-A-G 20199471-A-G DYZ19 ***
13478702-T-C 11323026-T-C ***
22358465-A-T 20196579-A-T DYZ19 ***
22354429-T-A 20192543-T-A DYZ19 ***
22344726-G-T 20182840-G-T DYZ19 ***
22343106-G-T 20181220-G-T DYZ19 ***
22366716-T-G 20204830-T-G DYZ19 ***
22342566-T-G 20180680-T-G DYZ19 ***
22341143-G-T 20179257-G-T DYZ19 ***
22309957-A-G 20148071-A-G DYZ19 ***
22309915-C-A 20148029-C-A DYZ19 ***
22309391-C-T 20147505-C-T DYZ19 ***
22297457-C-T 20135571-C-T DYZ19 ***
22366699-T-G 20204813-T-G DYZ19 ***
22420764-T-C 20258878-T-C DYZ19 ***
22297349-T-G 20135463-T-G DYZ19 ***
22495316-A-T 20333430-A-T DYZ19 ***
24620925-G-T 22474778-G-T P3_t2 ***
24329050-G-A 22182903-G-A P3_t1 ***
22503176-G-T 20341290-G-T DYZ19 ***
22499532-T-A 20337646-T-A DYZ19 ***
22499521-C-A 20337635-C-A DYZ19 ***
22496206-T-A 20334320-T-A DYZ19 ***
22495301-G-T 20333415-G-T DYZ19 ***
22434225-T-A 20272339-T-A DYZ19 ***
22491804-T-G 20329918-T-G DYZ19 ***
22481114-G-A 20319228-G-A DYZ19 ***
22480929-G-A 20319043-G-A DYZ19 ***
22480925-A-T 20319039-A-T DYZ19 ***
22480903-C-G 20319017-C-G DYZ19 ***
22456727-C-T 20294841-C-T DYZ19 ***
22434783-A-T 20272897-A-T DYZ19 ***
22297353-C-T 20135467-C-T DYZ19 ***
22283346-T-C 20121460-T-C DYZ19 ***
13703351-A-G 11547675-A-G BY15095 ***
16364070-A-G 14252190-A-G ***
19846271-G-T 17734391-G-T P5_Prx ***
19817009-A-T 17705129-A-T P5_Prx ***
19817002-C-A 17705122-C-A P5_Prx ***
19752427-C-A 17640547-C-A P5_Prx ***
19740991-C-A 17629111-C-A P5_Prx ***
18278450-T-A 16166570-T-A P6_Prx ***
16351427-G-T 14239547-G-T ***
19859324-G-A 17747444-G-A P5_Prx ***
16169656-G-C 14057776-G-C ***
16169352-G-A 14057472-G-A ***
16129350-G-A 14017470-G-A P8_Prx ***
16129267-C-T 14017387-C-T P8_Prx ***
13743598-A-T 11587922-A-T ***
13716281-T-A 11560605-T-A ***
13710641-A-G 11554965-A-G ***
19859277-C-A 17747397-C-A P5_Prx ***
19892484-G-A 17780604-G-A P5_Prx ***
22281898-T-G 20120012-T-G DYZ19 ***
22232050-A-G 20070164-A-G DYZ19 ***
22276533-A-G 20114647-A-G DYZ19 ***
22273647-G-T 20111761-G-T DYZ19 ***
22268295-T-G 20106409-T-G DYZ19 ***
22268153-G-A 20106267-G-A DYZ19 ***
22251462-C-A 20089576-C-A DYZ19 ***
22235017-G-C 20073131-G-C DYZ19 ***
20501022-T-G 18339136-T-G P5_Dst ***
19892504-G-T 17780624-G-T P5_Prx ***
20371821-A-G 18209935-A-G P5_Dst ***
20368370-C-T 18206484-C-T P5_Dst ***
20368362-A-T 18206476-A-T P5_Dst ***
20333253-A-T 18171367-A-T P5_Dst ***
20333252-C-T 18171366-C-T P5_Dst ***
20118722-C-G 18006842-C-G P5_Dst ***
20118706-T-C 18006826-T-C P5_Dst ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 7WDDR*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs3729
Variant counts last updated 2018-07-08 20:58:46.

* BED data not available. Using default values.

Big Tree Main Page