McCown
FGC: B9S75MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FGC B9S75 |
---|---|---|---|---|---|---|---|---|
13384144-C-G | 11228468-C-G | FGC15158 | + | |||||
14258440-C-T | 12137734-C-T | S613 | ** | |||||
13252782-A-G | 11097106-A-G | ** | ||||||
13252783-G-T | 11097107-G-T | 11×T | ** | |||||
8389569-C-T | 8521528-C-T | 25×T | ** | |||||
3167154-T-G | 3299113-T-G | ** | ||||||
5647667-T-C | 5779626-T-C | ** | ||||||
8826989-T-C | 8958948-T-C | ** | ||||||
9799996-T-C | 9962387-T-C | ** | ||||||
10067016-A-C | 10229407-A-C | ** | ||||||
13411367-G-A | 11255691-G-A | ** | ||||||
13411377-G-A | 11255701-G-A | ** | ||||||
13487635-T-C | 11331959-T-C | ** | ||||||
13487638-T-G | 11331962-T-G | ** | ||||||
13877953-T-C | 11757247-T-C | ** | ||||||
13877961-G-A | 11757255-G-A | ** | ||||||
14210087-A-G | 12089381-A-G | ** | ||||||
15173667-A-T | 13061753-A-T | ** | ||||||
15483834-C-A | 13371954-C-A | ** | ||||||
21154569-A-G | 18992683-A-G | ** | ||||||
21198262-T-G | 19036376-T-G | ** | ||||||
22308476-G-T | 20146590-G-T | DYZ19 | ** | |||||
14100082-AT-A | 11979376-AT-A | ** | ||||||
28293228-CCAGGG-C | 26147081-CCAGGG-C | P1_b4 | ** | |||||
59004519-G-GTTTAT | 56858372-G-GTTTAT | ** | ||||||
22352967-G-T | 20191081-G-T | DYZ19 | *** | |||||
22502134-C-G | 20340248-C-G | DYZ19 | *** | |||||
58912398-C-T | 56678473-G-A | *** | ||||||
13266695-CA-AC | 11111019-CA-AC | *** | ||||||
22421978-T-C | 20260092-T-C | DYZ19 | *** | |||||
5479798-C-T | 5611757-C-T | *** | ||||||
19656617-C-A | 17544737-C-A | P5_Prx | *** | |||||
22366464-C-T | 20204578-C-T | DYZ19 | *** | |||||
58872956-C-T | 56717915-G-A | *** | ||||||
58872962-A-C | 56717909-T-G | *** | ||||||
58872982-A-T | 56717889-T-A | *** | ||||||
58875108-T-C | 56715763-A-G | *** | ||||||
22251617-ACA-CCT | 20089731-ACA-CCT | DYZ19 | *** | |||||
58819939-A-G | 56770932-T-C | *** | ||||||
10090675-G-T | 10253066-G-T | *** | ||||||
19656586-G-T | 17544706-G-T | P5_Prx | *** | |||||
19656670-A-C | 17544790-A-C | P5_Prx | *** | |||||
19656671-A-T | 17544791-A-T | P5_Prx | *** | |||||
19656678-C-T | 17544798-C-T | P5_Prx | *** | |||||
22268302-C-T | 20106416-C-T | DYZ19 | *** | |||||
27423533-A-T | 25277386-A-T | P1_g3 | *** | |||||
58908630-A-C | 56682241-T-G | *** | ||||||
14166071-T-G | 12045365-T-G | *** | ||||||
22364847-T-G | 20202961-T-G | DYZ19 | *** | |||||
22309502-A-T | 20147616-A-T | DYZ19 | *** | |||||
9930192-T-G | 10092583-T-G | *** | ||||||
22359846-G-T | 20197960-G-T | DYZ19 | *** | |||||
22359847-A-T | 20197961-A-T | DYZ19 | *** | |||||
22421761-C-T | 20259875-C-T | DYZ19 | *** | |||||
58836772-C-G | 56754099-G-C | *** | ||||||
58913180-C-T | 56677691-G-A | *** | ||||||
22292319-AGT-TAC | 20130433-AGT-TAC | DYZ19 | *** | |||||
22359836-C-A | 20197950-C-A | DYZ19 | *** | |||||
58840632-T-A | 56750239-A-T | *** | ||||||
58874601-T-A | 56716270-A-T | *** | ||||||
58874610-C-A | 56716261-G-T | *** | ||||||
19025650-A-G | 16913770-A-G | CTS9693 | *** | |||||
13618508-T-A | 11462832-T-A | *** | ||||||
13699894-T-C | 11544218-T-C | *** | ||||||
13460188-C-G | 11304512-C-G | *** | ||||||
13462994-A-G | 11307318-A-G | *** | ||||||
13472818-C-T | 11317142-C-T | *** | ||||||
13440371-A-G | 11284695-A-G | *** | ||||||
13950947-C-T | 11830241-C-T | 23×T | *** | |||||
5268733-T-A | 5400692-T-A | *** | ||||||
13258279-C-G | 11102603-C-G | *** | ||||||
13485110-C-T | 11329434-C-T | *** | ||||||
10064091-A-G | 10226482-A-G | *** | ||||||
13257722-G-T | 11102046-G-T | *** | ||||||
4019866-C-A | 4151825-C-A | *** | ||||||
9952771-G-A | 10115162-G-A | *** | ||||||
9952770-T-C | 10115161-T-C | *** | ||||||
10010637-T-G | 10173028-T-G | *** | ||||||
13279857-G-T | 11124181-G-T | *** | ||||||
22250496-C-A | 20088610-C-A | DYZ19 | *** | |||||
22256959-T-C | 20095073-T-C | DYZ19 | *** | |||||
9952737-T-G | 10115128-T-G | *** | ||||||
4911536-C-T | 5043495-C-T | *** | ||||||
13310578-C-T | 11154902-C-T | *** | ||||||
13472329-G-A | 11316653-G-A | *** | ||||||
13472334-G-C | 11316658-G-C | *** | ||||||
2773691-T-A | 2905650-T-A | 19×A | *** | |||||
3147947-A-T | 3279906-A-T | *** | ||||||
3174557-A-T | 3306516-A-T | *** | ||||||
3174558-G-T | 3306517-G-T | *** | ||||||
3321587-A-G | 3453546-A-G | *** | ||||||
3414344-C-T | 3546303-C-T | *** | ||||||
3515934-T-C | 3647893-T-C | *** | ||||||
3754514-C-T | 3886473-C-T | *** | ||||||
4576343-G-A | 4708302-G-A | *** | ||||||
5224939-A-T | 5356898-A-T | *** | ||||||
5337131-C-T | 5469090-C-T | *** | ||||||
5684530-A-G | 5816489-A-G | *** | ||||||
5862260-T-A | 5994219-T-A | *** | ||||||
6139377-A-G | 6271336-A-G | IR3_Dst | *** | |||||
6158433-G-A | 6290392-G-A | IR3_Dst | *** | |||||
6164046-A-C | 6296005-A-C | IR3_Dst | *** | |||||
6164048-G-A | 6296007-G-A | IR3_Dst | *** | |||||
6499863-G-A | 6631822-G-A | *** | ||||||
6499864-C-A | 6631823-C-A | *** | ||||||
6998806-A-T | 7130765-A-T | *** | ||||||
7035274-G-T | 7167233-G-T | BY62945 | *** | |||||
7256655-C-A | 7388614-C-A | *** | ||||||
7484061-T-A | 7616020-T-A | IR1_L | *** | |||||
7525657-C-G | 7657616-C-G | *** | ||||||
8002557-T-C | 8134516-T-C | *** | ||||||
8005517-A-G | 8137476-A-G | *** | ||||||
8005550-G-C | 8137509-G-C | *** | ||||||
8293408-T-A | 8425367-T-A | *** | ||||||
8293411-G-A | 8425370-G-A | *** | ||||||
8293415-T-C | 8425374-T-C | *** | ||||||
8481060-T-A | 8613019-T-A | YFS032928 | *** | |||||
8786320-T-C | 8918279-T-C | *** | ||||||
9189763-C-A | 9352154-C-A | *** | ||||||
9350322-G-T | 9512713-G-T | *** | ||||||
9431843-G-T | 9594234-G-T | *** | ||||||
9431852-C-A | 9594243-C-A | *** | ||||||
9524034-T-A | 9686425-T-A | *** | ||||||
9524037-A-C | 9686428-A-C | *** | ||||||
9524039-A-T | 9686430-A-T | *** | ||||||
9779518-C-A | 9941909-C-A | *** | ||||||
9928492-A-T | 10090883-A-T | *** | ||||||
9930169-G-T | 10092560-G-T | *** | ||||||
9943456-C-T | 10105847-C-T | *** | ||||||
10025078-G-C | 10187469-G-C | *** | ||||||
10033590-C-A | 10195981-C-A | *** | ||||||
10033604-G-A | 10195995-G-A | *** | ||||||
10034767-C-T | 10197158-C-T | *** | ||||||
10065687-A-G | 10228078-A-G | *** | ||||||
10090451-T-G | 10252842-T-G | *** | ||||||
10090493-A-G | 10252884-A-G | *** | ||||||
10090504-G-T | 10252895-G-T | *** | ||||||
10090505-G-T | 10252896-G-T | *** | ||||||
10090510-A-G | 10252901-A-G | *** | ||||||
10094649-G-A | 10257040-G-A | *** | ||||||
10095028-A-G | 10257419-A-G | *** | ||||||
10095031-A-G | 10257422-A-G | *** | ||||||
10095032-T-A | 10257423-T-A | *** | ||||||
10095043-A-C | 10257434-A-C | *** | ||||||
13104554-G-C | 10594040-G-C | *** | ||||||
13104555-A-T | 10594041-A-T | *** | ||||||
13114406-A-G | 10603892-A-G | *** | ||||||
13232810-T-A | 11077134-T-A | *** | ||||||
13258729-G-A | 11103053-G-A | *** | ||||||
13311691-A-T | 11156015-A-T | *** | ||||||
13353309-C-A | 11197633-C-A | *** | ||||||
13356085-T-A | 11200409-T-A | *** | ||||||
13431333-C-T | 11275657-C-T | FGC60316 | *** | |||||
13460182-A-G | 11304506-A-G | *** | ||||||
13460190-C-G | 11304514-C-G | *** | ||||||
13460231-C-A | 11304555-C-A | *** | ||||||
13460235-C-G | 11304559-C-G | *** | ||||||
13460247-T-G | 11304571-T-G | *** | ||||||
13460258-T-C | 11304582-T-C | *** | ||||||
13462940-T-A | 11307264-T-A | BY153328 | *** | |||||
13463521-G-C | 11307845-G-C | *** | ||||||
13465803-T-G | 11310127-T-G | *** | ||||||
13465807-T-G | 11310131-T-G | *** | ||||||
13472129-G-A | 11316453-G-A | *** | ||||||
13472141-G-A | 11316465-G-A | *** | ||||||
13472348-G-A | 11316672-G-A | *** | ||||||
13472799-A-C | 11317123-A-C | *** | ||||||
13473737-A-C | 11318061-A-C | *** | ||||||
13474801-C-T | 11319125-C-T | *** | ||||||
13477114-G-T | 11321438-G-T | *** | ||||||
13477136-C-T | 11321460-C-T | *** | ||||||
13477150-C-A | 11321474-C-A | *** | ||||||
13479774-T-A | 11324098-T-A | *** | ||||||
13482939-T-A | 11327263-T-A | *** | ||||||
13485079-T-A | 11329403-T-A | *** | ||||||
13485090-C-A | 11329414-C-A | *** | ||||||
13485091-T-A | 11329415-T-A | *** | ||||||
13485376-T-C | 11329700-T-C | *** | ||||||
13485520-C-T | 11329844-C-T | *** | ||||||
13518272-G-C | 11362596-G-C | *** | ||||||
13697138-T-A | 11541462-T-A | *** | ||||||
13708822-T-A | 11553146-T-A | *** | ||||||
13708847-C-A | 11553171-C-A | *** | ||||||
13716396-T-A | 11560720-T-A | *** | ||||||
13730412-C-G | 11574736-C-G | *** | ||||||
13748458-A-G | 11592782-A-G | *** | ||||||
13748466-T-C | 11592790-T-C | *** | ||||||
13748467-G-T | 11592791-G-T | *** | ||||||
13748472-G-A | 11592796-G-A | *** | ||||||
13748490-A-C | 11592814-A-C | *** | ||||||
13748498-G-A | 11592822-G-A | *** | ||||||
13844537-T-A | 11723831-T-A | *** | ||||||
13974842-A-T | 11854136-A-T | *** | ||||||
14355526-G-A | 12234821-G-A | *** | ||||||
15247142-T-C | 13135228-T-C | *** | ||||||
15639494-A-T | 13527614-A-T | *** | ||||||
15690348-G-A | 13578468-G-A | *** | ||||||
15740806-C-T | 13628926-C-T | FTB63578 | *** | |||||
15794028-G-A | 13682148-G-A | *** | ||||||
16096768-C-T | 13984888-C-T | *** | ||||||
16096812-A-T | 13984932-A-T | *** | ||||||
16096813-A-T | 13984933-A-T | *** | ||||||
16097146-C-T | 13985266-C-T | *** | ||||||
16097154-C-T | 13985274-C-T | *** | ||||||
16945562-G-A | 14833682-G-A | *** | ||||||
17036209-G-T | 14924329-G-T | *** | ||||||
17684085-A-T | 15572205-A-T | *** | ||||||
17684089-G-A | 15572209-G-A | *** | ||||||
18381207-G-A | 16269327-G-A | P6_Prx | *** | |||||
18403055-G-A | 16291175-G-A | P6_Gap | *** | |||||
18434423-A-G | 16322543-A-G | P6_Dst | *** | |||||
18511677-T-C | 16399797-T-C | P6_Dst | *** | |||||
19443534-T-A | 17331654-T-A | *** | ||||||
19542227-A-T | 17430347-A-T | *** | ||||||
19656650-C-T | 17544770-C-T | P5_Prx | *** | |||||
19656652-T-C | 17544772-T-C | P5_Prx | *** | |||||
19870156-A-T | 17758276-A-T | P5_Prx | *** | |||||
19887445-C-A | 17775565-C-A | P5_Prx | *** | |||||
19899324-T-A | 17787444-T-A | P5_Prx | *** | |||||
19899328-T-C | 17787448-T-C | P5_Prx | *** | |||||
20300708-G-T | 18138822-G-T | P5_Dst | *** | |||||
20300731-A-T | 18138845-A-T | P5_Dst | *** | |||||
20300862-A-T | 18138976-A-T | P5_Dst | *** | |||||
20300868-G-T | 18138982-G-T | P5_Dst | *** | |||||
20355685-C-A | 18193799-C-A | P5_Dst | *** | |||||
20355740-A-C | 18193854-A-C | P5_Dst | *** | |||||
20355747-C-T | 18193861-C-T | P5_Dst | *** | |||||
20355759-G-A | 18193873-G-A | P5_Dst | *** | |||||
20355774-C-T | 18193888-C-T | P5_Dst | *** | |||||
20355775-G-T | 18193889-G-T | P5_Dst | *** | |||||
20544027-G-A | 18382141-G-A | P5_Dst | *** | |||||
20544039-G-A | 18382153-G-A | P5_Dst | *** | |||||
20544069-C-T | 18382183-C-T | P5_Dst | *** | |||||
20574055-G-A | 18412169-G-A | P5_Dst | *** | |||||
20574069-G-T | 18412183-G-T | P5_Dst | *** | |||||
20574072-C-T | 18412186-C-T | P5_Dst | *** | |||||
20574077-G-A | 18412191-G-A | P5_Dst | *** | |||||
20975623-A-T | 18813737-A-T | P4_Dst | *** | |||||
21154603-A-C | 18992717-A-C | *** | ||||||
21198284-T-A | 19036398-T-A | *** | ||||||
21208773-G-A | 19046887-G-A | *** | ||||||
21363012-C-T | 19201126-C-T | *** | ||||||
21869136-C-T | 19707250-C-T | *** | ||||||
21953644-A-T | 19791758-A-T | *** | ||||||
21969155-G-A | 19807269-G-A | *** | ||||||
22196371-C-T | 20034485-C-T | *** | ||||||
22234335-T-A | 20072449-T-A | DYZ19 | *** | |||||
22234364-G-A | 20072478-G-A | DYZ19 | *** | |||||
22234365-T-A | 20072479-T-A | DYZ19 | *** | |||||
22234375-C-A | 20072489-C-A | DYZ19 | *** | |||||
22236572-T-A | 20074686-T-A | DYZ19 | *** | |||||
22241545-C-A | 20079659-C-A | DYZ19 | *** | |||||
22300978-A-T | 20139092-A-T | DYZ19 | *** | |||||
22309485-T-G | 20147599-T-G | DYZ19 | *** | |||||
22309491-C-T | 20147605-C-T | DYZ19 | *** | |||||
22309523-A-C | 20147637-A-C | DYZ19 | *** | |||||
22336079-G-A | 20174193-G-A | DYZ19 | *** | |||||
22341617-A-T | 20179731-A-T | DYZ19 | *** | |||||
22344209-A-G | 20182323-A-G | DYZ19 | *** | |||||
22352968-T-A | 20191082-T-A | DYZ19 | *** | |||||
22360249-G-A | 20198363-G-A | DYZ19 | *** | |||||
22360528-A-T | 20198642-A-T | DYZ19 | *** | |||||
22361055-G-T | 20199169-G-T | DYZ19 | *** | |||||
22361066-C-T | 20199180-C-T | DYZ19 | *** | |||||
22367934-T-G | 20206048-T-G | DYZ19 | *** | |||||
22421006-T-A | 20259120-T-A | DYZ19 | *** | |||||
22421012-C-T | 20259126-C-T | DYZ19 | *** | |||||
22421487-T-C | 20259601-T-C | DYZ19 | *** | |||||
22421506-T-C | 20259620-T-C | DYZ19 | *** | |||||
22421511-C-T | 20259625-C-T | DYZ19 | *** | |||||
22421528-G-A | 20259642-G-A | DYZ19 | *** | |||||
22421737-T-C | 20259851-T-C | DYZ19 | *** | |||||
22421756-T-C | 20259870-T-C | DYZ19 | *** | |||||
22421778-G-A | 20259892-G-A | DYZ19 | *** | |||||
22426296-C-T | 20264410-C-T | DYZ19 | *** | |||||
22435814-C-G | 20273928-C-G | DYZ19 | *** | |||||
22481233-G-T | 20319347-G-T | DYZ19 | *** | |||||
22481293-A-G | 20319407-A-G | DYZ19 | *** | |||||
22502143-G-T | 20340257-G-T | DYZ19 | *** | |||||
22502150-T-A | 20340264-T-A | DYZ19 | *** | |||||
22504827-T-C | 20342941-T-C | DYZ19 | *** | |||||
22504828-T-G | 20342942-T-G | DYZ19 | *** | |||||
22504829-T-G | 20342943-T-G | DYZ19 | *** | |||||
22828295-G-T | 20666409-G-T | *** | ||||||
23036703-T-G | 20874817-T-G | *** | ||||||
23226514-T-A | 21064628-T-A | *** | ||||||
23425255-A-C | 21263369-A-C | *** | ||||||
23808785-C-T | 21646899-C-T | *** | ||||||
25339548-A-G | 23193401-A-G | P2_r1 | *** | |||||
25405985-C-A | 23259838-C-A | P2_r2 | *** | |||||
25505321-A-T | 23359174-A-T | P1_gr1 | *** | |||||
25516992-T-C | 23370845-T-C | P1_gr1 | *** | |||||
25517027-T-A | 23370880-T-A | P1_gr1 | *** | |||||
25517028-C-A | 23370881-C-A | P1_gr1 | *** | |||||
25542705-G-A | 23396558-G-A | P1_gr1 | *** | |||||
25877760-T-C | 23731613-T-C | P1_Y1 | *** | |||||
25954142-T-C | 23807995-T-C | P1_Y1 | *** | |||||
25957274-A-T | 23811127-A-T | P1_Y1 | *** | |||||
26539095-T-C | 24392948-T-C | P1_g2 | *** | |||||
26951072-G-A | 24804925-G-A | P1_r3 | *** | |||||
27254885-G-C | 25108738-G-C | P1_g3 | *** | |||||
27311343-C-A | 25165196-C-A | P1_g3 | *** | |||||
27311347-G-A | 25165200-G-A | P1_g3 | *** | |||||
27311349-T-A | 25165202-T-A | P1_g3 | *** | |||||
27311351-C-A | 25165204-C-A | P1_g3 | *** | |||||
27311359-C-T | 25165212-C-T | P1_g3 | *** | |||||
27311369-T-G | 25165222-T-G | P1_g3 | *** | |||||
27311373-A-T | 25165226-A-T | P1_g3 | *** | |||||
27330746-C-T | 25184599-C-T | P1_g3 | *** | |||||
27456901-A-T | 25310754-A-T | P1_Y2 | *** | |||||
27546225-A-T | 25400078-A-T | P1_Y2 | *** | |||||
27705951-C-A | 25559804-C-A | P1_Y2 | *** | |||||
27706109-C-T | 25559962-C-T | P1_Y2 | *** | |||||
27791986-T-G | 25645839-T-G | P1_Y2 | *** | |||||
28076647-C-T | 25930500-C-T | P1_Y2 | *** | |||||
28076652-T-C | 25930505-T-C | P1_Y2 | *** | |||||
28076655-G-T | 25930508-G-T | P1_Y2 | *** | |||||
28076691-G-T | 25930544-G-T | P1_Y2 | *** | |||||
28076703-C-T | 25930556-C-T | P1_Y2 | *** | |||||
28737671-G-T | 26591524-G-T | *** | ||||||
58823024-C-G | 56767847-G-C | *** | ||||||
58823436-C-A | 56767435-G-T | *** | ||||||
58838805-T-C | 56752066-A-G | *** | ||||||
58840455-C-T | 56750416-G-A | *** | ||||||
58840635-C-T | 56750236-G-A | *** | ||||||
58840640-A-C | 56750231-T-G | *** | ||||||
58851970-A-G | 56738901-T-C | *** | ||||||
58866404-A-T | 56724467-T-A | *** | ||||||
58866951-T-A | 56723920-A-T | *** | ||||||
58866960-C-A | 56723911-G-T | *** | ||||||
58866964-C-G | 56723907-G-C | *** | ||||||
58867456-G-C | 56723415-C-G | *** | ||||||
58867459-T-A | 56723412-A-T | *** | ||||||
58867461-A-T | 56723410-T-A | *** | ||||||
58874624-T-G | 56716247-A-C | *** | ||||||
58874636-T-G | 56716235-A-C | *** | ||||||
58874638-T-C | 56716233-A-G | *** | ||||||
58877133-G-T | 56713738-C-A | *** | ||||||
58893271-A-C | 56697600-T-G | *** | ||||||
58908601-T-A | 56682270-A-T | *** | ||||||
58913015-T-A | 56677856-A-T | *** | ||||||
58913102-C-T | 56677769-G-A | *** | ||||||
58913107-C-A | 56677764-G-T | *** | ||||||
58913118-G-C | 56677753-C-G | *** | ||||||
58913136-T-C | 56677735-A-G | *** | ||||||
58913145-G-T | 56677726-C-A | *** | ||||||
58913150-G-T | 56677721-C-A | *** | ||||||
58913165-G-T | 56677706-C-A | *** | ||||||
58913169-A-T | 56677702-T-A | *** | ||||||
58917657-N-A | 56673214-N-T | *** | ||||||
16729194-TGC-T | 14617314-TGC-T | *** | ||||||
59016927-CA-TG | 56870780-CA-TG | *** | ||||||
13470168-AG-CC | 11314492-AG-CC | *** | ||||||
23084704-G-GT | 20922818-G-GT | 19×T | *** | |||||
58973109-CATTAG-C | 56826962-CATTAG-C | *** | ||||||
22293342-TT-GA | 20131456-TT-GA | DYZ19 | *** | |||||
22422828-TT-CA | 20260942-TT-CA | DYZ19 | *** | |||||
3167170-GTA-ATG | 3299129-GTA-ATG | *** | ||||||
3754540-G-GT | 3886499-G-GT | *** | ||||||
4086409-CA-C | 4218368-CA-C | *** | ||||||
6150022-TATAT-C | 6281981-TATAT-C | IR3_Dst | *** | |||||
6164046-AAG-CAA | 6296005-AAG-CAA | IR3_Dst | *** | |||||
9654346-AGAAGAT-GATAGAA | 9816737-AGAAGAT-GATAGAA | IR3_Prx | *** | |||||
9929928-CGCCAAGCA-TGCCAAGAT | 10092319-CGCCAAGCA-TGCCAAGAT | *** | ||||||
9929945-CAGT-GGGC | 10092336-CAGT-GGGC | *** | ||||||
9930222-TGC-CGG | 10092613-TGC-CGG | *** | ||||||
10033570-TG-GA | 10195961-TG-GA | *** | ||||||
10033581-ACA-CCT | 10195972-ACA-CCT | *** | ||||||
10033602-TGG-GGA | 10195993-TGG-GGA | *** | ||||||
10065680-GG-TA | 10228071-GG-TA | *** | ||||||
13140074-GAGTGCGTGTG-C | 10629560-GAGTGCGTGTG-C | *** | ||||||
13203980-TC-AT | 11048304-TC-AT | *** | ||||||
13253393-TCGG-CCAGTTTT | 11097717-TCGG-CCAGTTTT | *** | ||||||
13263371-CAGC-TAGG | 11107695-CAGC-TAGG | *** | ||||||
13310581-GG-CA | 11154905-GG-CA | *** | ||||||
13411421-AG-GC | 11255745-AG-GC | *** | ||||||
13460194-ACAAT-GCAAG | 11304518-ACAAT-GCAAG | *** | ||||||
13468417-CGGG-TGGA | 11312741-CGGG-TGGA | *** | ||||||
13469765-TTTT-GTTA | 11314089-TTTT-GTTA | *** | ||||||
13469931-TGAC-CACA | 11314255-TGAC-CACA | *** | ||||||
13472128-TGG-CAT | 11316452-TGG-CAT | *** | ||||||
13475227-AG-A | 11319551-AG-A | *** | ||||||
13476191-AAT-CAG | 11320515-AAT-CAG | *** | ||||||
13476769-GAAA-AGAG | 11321093-GAAA-AGAG | *** | ||||||
13481504-GCAGT-ACAGG | 11325828-GCAGT-ACAGG | *** | ||||||
13483078-CTAAGTT-ATACGCC | 11327402-CTAAGTT-ATACGCC | *** | ||||||
13485376-TAA-CAT | 11329700-TAA-CAT | *** | ||||||
13485810-ACT-TCA | 11330134-ACT-TCA | *** | ||||||
13487635-TGCT-CACG | 11331959-TGCT-CACG | *** | ||||||
13487672-A-AAAACGCGCCGCCC | 11331996-A-AAAACGCGCCGCCC | *** | ||||||
13701958-CAAAAGGAATT-GAAATATAATA | 11546282-CAAAAGGAATT-GAAATATAATA | *** | ||||||
13799358-ATGAAA-TCGAAT | 11678652-ATGAAA-TCGAAT | *** | ||||||
13799369-GGCTTC-G | 11678663-GGCTTC-G | *** | ||||||
13819003-CG-GA | 11698297-CG-GA | *** | ||||||
14468822-G-AA | 12348091-G-AA | 14×A | *** | |||||
14532737-G-GCCCCC | 12420938-G-GCCCCC | *** | ||||||
15308826-T-TTC | 13196929-A-T | 20×AC | *** | |||||
15324345-GTA-TT | 13212463-GTA-TT | *** | ||||||
15491937-GTGTGTATATA-G | 13380057-GTGTGTATATA-G | *** | ||||||
16505968-CTTTCTTCTTCTTTC-TTTTTTTTTTTTTTT | 14394088-CTTTCTTCTTCTTTC-TTTTTTTTTTTTTTT | *** | ||||||
18738827-G-GTATA | 16626947-G-GTATA | 10×TA | *** | |||||
19847641-TTTTTTTTTT-CTTTTTTC | 17735761-TTTTTTTTTT-CTTTTTTC | P5_Prx | *** | |||||
21464216-G-GAAAT | 19302330-G-GAAAT | *** | ||||||
22227912-TAAC-GAAA | 20066026-TAAC-GAAA | DYZ19 | *** | |||||
22250469-ATAA-TTAG | 20088583-ATAA-TTAG | DYZ19 | *** | |||||
22256922-TTC-GTG | 20095036-TTC-GTG | DYZ19 | *** | |||||
22256931-GTGG-TTGT | 20095045-GTGG-TTGT | DYZ19 | *** | |||||
22257040-G-GA | 20095154-G-GA | DYZ19 | *** | |||||
22263837-TTGC-GTGT | 20101951-TTGC-GTGT | DYZ19 | *** | |||||
22263841-AT-CC | 20101955-AT-CC | DYZ19 | *** | |||||
22309498-CAGGA-AAGGT | 20147612-CAGGA-AAGGT | DYZ19 | *** | |||||
22309523-AGAA-CTAG | 20147637-AGAA-CTAG | DYZ19 | *** | |||||
22309544-GTGGT-CTGGG | 20147658-GTGGT-CTGGG | DYZ19 | *** | |||||
22335690-AAGT-TAGG | 20173804-AAGT-TAGG | DYZ19 | *** | |||||
22335703-TAGA-CAGC | 20173817-TAGA-CAGC | DYZ19 | *** | |||||
22335731-ATAG-TT | 20173845-ATAG-TT | DYZ19 | *** | |||||
22335748-AG-CT | 20173862-AG-CT | DYZ19 | *** | |||||
22336085-AGT-TGA | 20174199-AGT-TGA | DYZ19 | *** | |||||
22352967-GT-TA | 20191081-GT-TA | DYZ19 | *** | |||||
22353018-TG-T | 20191132-TG-T | DYZ19 | *** | |||||
22421441-GC-TGG | 20259555-GC-TGG | DYZ19 | *** | |||||
22421453-AGCTCTTAAAAC-TGCACTTTAAGT | 20259567-AGCTCTTAAAAC-TGCACTTTAAGT | DYZ19 | *** | |||||
22488373-TTTCTGGGAGTTTCG-CTTCAGGCAGGTTCA | 20326487-TTTCTGGGAGTTTCG-CTTCAGGCAGGTTCA | DYZ19 | *** | |||||
22498798-TCTGT-AGTGG | 20336912-TCTGT-AGTGG | DYZ19 | *** | |||||
22504827-TTT-CGG | 20342941-TTT-CGG | DYZ19 | *** | |||||
22520812-GAAAG-AAAAA | 20358926-GAAAG-AAAAA | *** | ||||||
23084722-T-TTTTTAAGGTTTTTTTTG | 20922836-T-TTTTTAAGGTTTTTTTTG | *** | ||||||
23832825-TTT-C | 21670939-TTT-C | *** | ||||||
25240117-TATTTA-T | 23093970-TATTTA-T | P2_r1 | *** | |||||
28253491-C-CAAATAA | 26107344-C-CAAATAA | P1_b4 | 32×A | *** | ||||
58823351-CATTG-C | 56767515-GCAAT-G | *** | ||||||
58844918-ATG-TTC | 56745951-CAT-GAA | *** | ||||||
58867416-CATTCCAT-TACTCTAG | 56723448-ATGGAATG-CTAGAGTA | *** | ||||||
58867438-ATCCATTCG-TTCCTTTCC | 56723425-CGAATGGAT-GGAAAGGAA | *** | ||||||
58867470-TG-CC | 56723400-CA-GG | *** | ||||||
58867475-CT-C | 56723394-GA-G | *** | ||||||
58867480-T-TG | 56723390-G-GC | *** | ||||||
58872945-CGTTC-AGTT | 56717922-GAACG-AACT | *** | ||||||
58893264-CG-AC | 56697606-CG-GT | *** | ||||||
58893280-GAGTCC-AAGT | 56697586-GGACTC-ACTT | *** | ||||||
58981976-T-TTCCG | 56835829-T-TTCCG | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.