Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF41/S524 > Z43690 > Y8426/FGC5572 > FGC5586 > A40 > MC07 > MC15 > MC16 > BY3102

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
B9S75
22080488-G-A 19918602-G-A FGC15164 YY+
3303964-T-G 3435923-T-G FGC15154 +
5277810-A-C 5409769-A-C FGC15156 +
13384144-C-G 11228468-C-G FGC15158 +
14051650-G-A 11930944-G-A FGC15159 YY*
2930037-A-G 3061996-A-G FGC15153 *
15173667-A-T 13061753-A-T **
9799996-T-C 9962387-T-C **
3167154-T-G 3299113-T-G **
21198262-T-G 19036376-T-G **
14100082-AT-A 11979376-AT-A **
21154569-A-G 18992683-A-G **
5647667-T-C 5779626-T-C **
8826989-T-C 8958948-T-C **
3374048-CATAAAATAAA-C 3506007-CATAAAATAAA-C 10×ATAAA**
10067016-A-C 10229407-A-C **
14210087-A-G 12089381-A-G **
22308476-G-T 20146590-G-T DYZ19 **
13411367-G-A 11255691-G-A **
8389569-C-T 8521528-C-T 25×T**
13487635-T-C 11331959-T-C **
13487638-T-G 11331962-T-G **
13877953-T-C 11757247-T-C **
13877961-G-A 11757255-G-A **
15483834-C-A 13371954-C-A **
13411377-G-A 11255701-G-A **
59004519-G-GTTTAT 56858372-G-GTTTAT **
13252783-G-T 11097107-G-T 11×T**
14258440-C-T 12137734-C-T S613 **
28293228-CCAGGG-C 26147081-CCAGGG-C P1_b4 **
22335748-AG-CT 20173862-AG-CT DYZ19 ***
25954142-T-C 23807995-T-C P1_Y1 ***
27311343-C-A 25165196-C-A P1_g3 ***
27254885-G-C 25108738-G-C P1_g3 ***
58867416-CATTCCAT-TACTCTAG 56723448-ATGGAATG-CTAGAGTA ***
22336085-AGT-TGA 20174199-AGT-TGA DYZ19 ***
26951072-G-A 24804925-G-A P1_r3 ***
26539095-T-C 24392948-T-C P1_g2 ***
25963857-C-A 23817710-C-A P1_Y1 ***
25957274-A-T 23811127-A-T P1_Y1 ***
25877760-T-C 23731613-T-C P1_Y1 ***
27311349-T-A 25165202-T-A P1_g3 ***
25542705-G-A 23396558-G-A P1_gr1 ***
25517028-C-A 23370881-C-A P1_gr1 ***
25517027-T-A 23370880-T-A P1_gr1 ***
25516992-T-C 23370845-T-C P1_gr1 ***
25505321-A-T 23359174-A-T P1_gr1 ***
25405985-C-A 23259838-C-A P2_r2 ***
25339548-A-G 23193401-A-G P2_r1 ***
58867438-ATCCATTCG-TTCCTTTCC 56723425-CGAATGGAT-GGAAAGGAA ***
58867470-TG-CC 56723400-CA-GG ***
27311347-G-A 25165200-G-A P1_g3 ***
27311351-C-A 25165204-C-A P1_g3 ***
58867475-CT-C 56723394-GA-G ***
28076691-G-T 25930544-G-T P1_Y2 ***
58840635-C-T 56750236-G-A ***
58840455-C-T 56750416-G-A ***
58838805-T-C 56752066-A-G ***
58823436-C-A 56767435-G-T ***
58823285-C-T 56767586-G-A ***
58823024-C-G 56767847-G-C ***
28737671-G-T 26591524-G-T ***
28076703-C-T 25930556-C-T P1_Y2 ***
28076655-G-T 25930508-G-T P1_Y2 ***
27311359-C-T 25165212-C-T P1_g3 ***
28076652-T-C 25930505-T-C P1_Y2 ***
28076647-C-T 25930500-C-T P1_Y2 ***
27791986-T-G 25645839-T-G P1_Y2 ***
27706109-C-T 25559962-C-T P1_Y2 ***
27705951-C-A 25559804-C-A P1_Y2 ***
27546225-A-T 25400078-A-T P1_Y2 ***
27456901-A-T 25310754-A-T P1_Y2 ***
27311373-A-T 25165226-A-T P1_g3 ***
27311369-T-G 25165222-T-G P1_g3 ***
23808785-C-T 21646899-C-T ***
58867480-T-TG 56723390-G-GC ***
58866404-A-T 56724467-T-A ***
58973110-ATTAGT-A 56826963-ATTAGT-A ***
22360528-A-T 20198642-A-T DYZ19 ***
22360249-G-A 20198363-G-A DYZ19 ***
22352968-T-A 20191082-T-A DYZ19 ***
22341617-A-T 20179731-A-T DYZ19 ***
22336079-G-A 20174193-G-A DYZ19 ***
22309523-A-C 20147637-A-C DYZ19 ***
22309491-C-T 20147605-C-T DYZ19 ***
22309485-T-G 20147599-T-G DYZ19 ***
22300978-A-T 20139092-A-T DYZ19 ***
22361066-C-T 20199180-C-T DYZ19 ***
22241545-C-A 20079659-C-A DYZ19 ***
22236572-T-A 20074686-T-A DYZ19 ***
22234375-C-A 20072489-C-A DYZ19 ***
22234365-T-A 20072479-T-A DYZ19 ***
58973111-TTAGTTTCCATTCCA-T 56826964-TTAGTTTCCATTCCA-T ***
58981976-T-TTCCG 56835829-T-TTCCG ***
22234364-G-A 20072478-G-A DYZ19 ***
22234335-T-A 20072449-T-A DYZ19 ***
22196371-C-T 20034485-C-T ***
22361055-G-T 20199169-G-T DYZ19 ***
22366393-T-G 20204507-T-G DYZ19 ***
23226514-T-A 21064628-T-A ***
22481293-A-G 20319407-A-G DYZ19 ***
58893264-CG-AC 56697606-CG-GT ***
23036703-T-G 20874817-T-G ***
58893280-GAGTCC-AAGT 56697586-GGACTC-ACTT ***
22828295-G-T 20666409-G-T ***
22504829-T-G 20342943-T-G DYZ19 ***
22504827-T-C 20342941-T-C DYZ19 ***
22502150-T-A 20340264-T-A DYZ19 ***
22502143-G-T 20340257-G-T DYZ19 ***
22435814-C-G 20273928-C-G DYZ19 ***
22367934-T-G 20206048-T-G DYZ19 ***
22426296-C-T 20264410-C-T DYZ19 ***
22421778-G-A 20259892-G-A DYZ19 ***
22421756-T-C 20259870-T-C DYZ19 ***
22421737-T-C 20259851-T-C DYZ19 ***
22421528-G-A 20259642-G-A DYZ19 ***
22421511-C-T 20259625-C-T DYZ19 ***
22421506-T-C 20259620-T-C DYZ19 ***
22421487-T-C 20259601-T-C DYZ19 ***
22421006-T-A 20259120-T-A DYZ19 ***
58840640-A-C 56750231-T-G ***
58844918-ATG-TTC 56745951-CAT-GAA ***
22335731-ATAG-TT 20173845-ATAG-TT DYZ19 ***
13483078-CTAAGTT-ATACGCC 11327402-CTAAGTT-ATACGCC ***
13799369-GGCTTC-G 11678663-GGCTTC-G ***
13799358-ATGAAA-TCGAAT 11678652-ATGAAA-TCGAAT ***
13603629-ATT-A 11447953-ATT-A 15×T***
13494555-AT-A 11338879-AT-A 13×T***
22504827-TTT-CGG 20342941-TTT-CGG DYZ19 ***
13487635-TGCT-CACG 11331959-TGCT-CACG ***
22520812-GAAAG-AAAAA 20358926-GAAAG-AAAAA ***
13485810-ACT-TCA 11330134-ACT-TCA ***
13476769-GAAA-AGAG 11321093-GAAA-AGAG ***
22498798-TCTGT-AGTGG 20336912-TCTGT-AGTGG DYZ19 ***
13475227-AG-A 11319551-AG-A ***
13472128-TGG-CAT 11316452-TGG-CAT ***
13469931-TGAC-CACA 11314255-TGAC-CACA ***
13469765-TTTT-GTTA 11314089-TTTT-GTTA ***
13460194-ACAAT-GCAAG 11304518-ACAAT-GCAAG ***
13411421-AG-GC 11255745-AG-GC ***
13310581-GG-CA 11154905-GG-CA ***
13263371-CAGC-TAGG 11107695-CAGC-TAGG ***
13253393-TCGG-CCAGTTTT 11097717-TCGG-CCAGTTTT ***
13819003-CG-GA 11698297-CG-GA ***
22421453-AGCTCTTAAAAC-TGCACTTTAAGT 20259567-AGCTCTTAAAAC-TGCACTTTAAGT DYZ19 ***
10065680-GG-TA 10228071-GG-TA ***
22227912-TAAC-GAAA 20066026-TAAC-GAAA DYZ19 ***
22335703-TAGA-CAGC 20173817-TAGA-CAGC DYZ19 ***
22335690-AAGT-TAGG 20173804-AAGT-TAGG DYZ19 ***
22309523-AGAA-CTAG 20147637-AGAA-CTAG DYZ19 ***
22309498-CAGGA-AAGGT 20147612-CAGGA-AAGGT DYZ19 ***
22263841-AT-CC 20101955-AT-CC DYZ19 ***
22263837-TTGC-GTGT 20101951-TTGC-GTGT DYZ19 ***
22257040-G-GA 20095154-G-GA DYZ19 ***
22250469-ATAA-TTAG 20088583-ATAA-TTAG DYZ19 ***
21464216-G-GAAAT 19302330-G-GAAAT ***
14468822-G-AA 12348091-G-AA 14×A***
19847641-TTTTTTTTTT-CTTTTTTC 17735761-TTTTTTTTTT-CTTTTTTC P5_Prx ***
18738827-G-GTATA 16626947-G-GTATA 10×TA***
16505968-CTTTCTTCTTCTTTC-TTTTTTTTTTTTTTT 14394088-CTTTCTTCTTCTTTC-TTTTTTTTTTTTTTT ***
15491937-GTGTGTATATA-G 13380057-GTGTGTATATA-G ***
15324345-GTA-TT 13212463-GTA-TT ***
22353018-TG-T 20191132-TG-T DYZ19 ***
15308826-T-TTC 13196929-A-T 20×AC***
22421441-GC-TGG 20259555-GC-TGG DYZ19 ***
14532737-G-GCCCCC 12420938-G-GCCCCC ***
13203980-TC-AT 11048304-TC-AT ***
10033602-TGG-GGA 10195993-TGG-GGA ***
58823351-CATTG-C 56767515-GCAAT-G ***
58877133-G-T 56713738-C-A ***
58913145-G-T 56677726-C-A ***
58913136-T-C 56677735-A-G ***
58913118-G-C 56677753-C-G ***
58913107-C-A 56677764-G-T ***
58913102-C-T 56677769-G-A ***
21969155-G-A 19807269-G-A ***
58908601-T-A 56682270-A-T ***
58893271-A-C 56697600-T-G ***
58874638-T-C 56716233-A-G ***
28253491-C-CAAATAA 26107344-C-CAAATAA P1_b4 32×A***
58874636-T-G 56716235-A-C ***
58874624-T-G 56716247-A-C ***
58867461-A-T 56723410-T-A ***
58867459-T-A 56723412-A-T ***
58867456-G-C 56723415-C-G ***
58866964-C-G 56723907-G-C ***
58866960-C-A 56723911-G-T ***
58866951-T-A 56723920-A-T ***
22352967-GT-TA 20191081-GT-TA DYZ19 ***
58913150-G-T 56677721-C-A ***
58913165-G-T 56677706-C-A ***
10033581-ACA-CCT 10195972-ACA-CCT ***
3754540-G-GT 3886499-G-GT ***
10033570-TG-GA 10195961-TG-GA ***
9930222-TGC-CGG 10092613-TGC-CGG ***
9929945-CAGT-GGGC 10092336-CAGT-GGGC ***
9929928-CGCCAAGCA-TGCCAAGAT 10092319-CGCCAAGCA-TGCCAAGAT ***
9654346-AGAAGAT-GATAGAA 9816737-AGAAGAT-GATAGAA IR3_Prx ***
6164046-AAG-CAA 6296005-AAG-CAA IR3_Dst ***
23084722-T-TTTTTAAGGTTTTTTTTG 20922836-T-TTTTTAAGGTTTTTTTTG ***
6150022-TATAT-C 6281981-TATAT-C IR3_Dst ***
4086409-CA-C 4218368-CA-C ***
23832825-TTT-C 21670939-TTT-C ***
58913169-A-T 56677702-T-A ***
3167170-GTA-ATG 3299129-GTA-ATG ***
22422828-TT-CA 20260942-TT-CA DYZ19 ***
22293342-TT-GA 20131456-TT-GA DYZ19 ***
58973109-CATTAG-C 56826962-CATTAG-C ***
25240117-TATTTA-T 23093970-TATTTA-T P2_r1 ***
23084704-G-GT 20922818-G-GT 19×T***
13947662-C-CA 11826956-C-CA 15×A***
16729194-TGC-T 14617314-TGC-T ***
58985853-C-A 56839706-C-A ***
58913015-T-A 56677856-A-T ***
13465561-T-C 11309885-T-C ***
21953644-A-T 19791758-A-T ***
6499863-G-A 6631822-G-A ***
8002557-T-C 8134516-T-C ***
7525657-C-G 7657616-C-G ***
7484061-T-A 7616020-T-A IR1_L ***
7420680-G-T 7552639-G-T PH649 ***
7256655-C-A 7388614-C-A ***
7035274-G-T 7167233-G-T BY62945 ***
6998806-A-T 7130765-A-T ***
6499864-C-A 6631823-C-A ***
6164048-G-A 6296007-G-A IR3_Dst ***
8005550-G-C 8137509-G-C ***
6164046-A-C 6296005-A-C IR3_Dst ***
6158433-G-A 6290392-G-A IR3_Dst ***
6139377-A-G 6271336-A-G IR3_Dst ***
5862260-T-A 5994219-T-A ***
5684530-A-G 5816489-A-G ***
5337131-C-T 5469090-C-T ***
5224939-A-T 5356898-A-T ***
4576343-G-A 4708302-G-A ***
3754514-C-T 3886473-C-T ***
8005517-A-G 8137476-A-G ***
8293408-T-A 8425367-T-A ***
3414344-C-T 3546303-C-T ***
9779518-C-A 9941909-C-A ***
10090504-G-T 10252895-G-T ***
10090493-A-G 10252884-A-G ***
10090451-T-G 10252842-T-G ***
10065687-A-G 10228078-A-G ***
10034767-C-T 10197158-C-T ***
10033604-G-A 10195995-G-A ***
10033590-C-A 10195981-C-A ***
9943456-C-T 10105847-C-T ***
9928492-A-T 10090883-A-T ***
9524039-A-T 9686430-A-T ***
8293411-G-A 8425370-G-A ***
9524037-A-C 9686428-A-C ***
9524034-T-A 9686425-T-A ***
9431852-C-A 9594243-C-A ***
9431843-G-T 9594234-G-T ***
9350322-G-T 9512713-G-T ***
9189763-C-A 9352154-C-A ***
8786320-T-C 8918279-T-C ***
8481060-T-A 8613019-T-A YFS032928 ***
8293415-T-C 8425374-T-C ***
3515934-T-C 3647893-T-C ***
3321587-A-G 3453546-A-G ***
10090510-A-G 10252901-A-G ***
22359847-A-T 20197961-A-T DYZ19 ***
19025650-A-G 16913770-A-G CTS9693 ***
58874610-C-A 56716261-G-T ***
58874601-T-A 56716270-A-T ***
58840632-T-A 56750239-A-T ***
22359836-C-A 20197950-C-A DYZ19 ***
13353839-G-T 11198163-G-T ***
58913180-C-T 56677691-G-A ***
58836772-C-G 56754099-G-C ***
22421761-C-T 20259875-C-T DYZ19 ***
22359846-G-T 20197960-G-T DYZ19 ***
13460188-C-G 11304512-C-G ***
9930192-T-G 10092583-T-G ***
22309502-A-T 20147616-A-T DYZ19 ***
14166071-T-G 12045365-T-G ***
27423533-A-T 25277386-A-T P1_g3 ***
19656670-A-C 17544790-A-C P5_Prx ***
19656586-G-T 17544706-G-T P5_Prx ***
19604835-C-A 17492955-C-A P5_Prx ***
13567082-C-T 11411406-C-T ***
22502134-C-G 20340248-C-G DYZ19 ***
13699894-T-C 11544218-T-C ***
13462994-A-G 11307318-A-G ***
3174558-G-T 3306517-G-T ***
22256959-T-C 20095073-T-C DYZ19 ***
3174557-A-T 3306516-A-T ***
3147947-A-T 3279906-A-T ***
2773691-T-A 2905650-T-A 19×A***
13340609-A-G 11184933-A-G ***
13472334-G-C 11316658-G-C ***
13472329-G-A 11316653-G-A ***
13310578-C-T 11154902-C-T ***
4911536-C-T 5043495-C-T ***
13472336-G-C 11316660-G-C ***
22250496-C-A 20088610-C-A DYZ19 ***
13440371-A-G 11284695-A-G ***
13279857-G-T 11124181-G-T ***
10010637-T-G 10173028-T-G ***
9952770-T-C 10115161-T-C ***
9952771-G-A 10115162-G-A ***
4019866-C-A 4151825-C-A ***
13257722-G-T 11102046-G-T ***
13485110-C-T 11329434-C-T ***
5268733-T-A 5400692-T-A ***
13950947-C-T 11830241-C-T 23×T***
10090505-G-T 10252896-G-T ***
10094649-G-A 10257040-G-A ***
21869136-C-T 19707250-C-T ***
15794028-G-A 13682148-G-A ***
17684089-G-A 15572209-G-A ***
17684085-A-T 15572205-A-T ***
17036209-G-T 14924329-G-T ***
16945562-G-A 14833682-G-A ***
16097154-C-T 13985274-C-T ***
16097146-C-T 13985266-C-T ***
16096813-A-T 13984933-A-T ***
16096812-A-T 13984932-A-T ***
16096768-C-T 13984888-C-T ***
15740806-C-T 13628926-C-T ***
18434423-A-G 16322543-A-G P6_Dst ***
15690348-G-A 13578468-G-A ***
15639494-A-T 13527614-A-T ***
15247142-T-C 13135228-T-C ***
14355526-G-A 12234821-G-A ***
13974842-A-T 11854136-A-T ***
13844537-T-A 11723831-T-A ***
13748498-G-A 11592822-G-A ***
13748490-A-C 11592814-A-C ***
13748472-G-A 11592796-G-A ***
18381207-G-A 16269327-G-A P6_Prx ***
18511677-T-C 16399797-T-C P6_Dst ***
13748466-T-C 11592790-T-C ***
20300862-A-T 18138976-A-T P5_Dst ***
21363012-C-T 19201126-C-T ***
21208773-G-A 19046887-G-A ***
21198284-T-A 19036398-T-A ***
20975623-A-T 18813737-A-T P4_Dst ***
20574072-C-T 18412186-C-T P5_Dst ***
20574069-G-T 18412183-G-T P5_Dst ***
20574055-G-A 18412169-G-A P5_Dst ***
20544027-G-A 18382141-G-A P5_Dst ***
22352967-G-T 20191081-G-T DYZ19 ***
20300731-A-T 18138845-A-T P5_Dst ***
19025638-T-G 16913758-T-G ***
20300708-G-T 18138822-G-T P5_Dst ***
19899328-T-C 17787448-T-C P5_Prx ***
19899324-T-A 17787444-T-A P5_Prx ***
19887445-C-A 17775565-C-A P5_Prx ***
19870156-A-T 17758276-A-T P5_Prx ***
19656652-T-C 17544772-T-C P5_Prx ***
19656650-C-T 17544770-C-T P5_Prx ***
19542227-A-T 17430347-A-T ***
19443534-T-A 17331654-T-A ***
13748467-G-T 11592791-G-T ***
13748458-A-G 11592782-A-G ***
10095028-A-G 10257419-A-G ***
13353309-C-A 11197633-C-A ***
13462940-T-A 11307264-T-A BY153328 ***
13460258-T-C 11304582-T-C ***
13460247-T-G 11304571-T-G ***
13460235-C-G 11304559-C-G ***
13460231-C-A 11304555-C-A ***
13460190-C-G 11304514-C-G ***
13460182-A-G 11304506-A-G ***
13431333-C-T 11275657-C-T FGC60316 ***
13356085-T-A 11200409-T-A ***
13340628-A-G 11184952-A-G ***
13465803-T-G 11310127-T-G ***
13311691-A-T 11156015-A-T ***
13258729-G-A 11103053-G-A ***
13232810-T-A 11077134-T-A ***
13114406-A-G 10603892-A-G ***
13104555-A-T 10594041-A-T ***
13104554-G-C 10594040-G-C ***
10095043-A-C 10257434-A-C ***
10095032-T-A 10257423-T-A ***
10095031-A-G 10257422-A-G ***
13463521-G-C 11307845-G-C ***
13465807-T-G 11310131-T-G ***
13730412-C-G 11574736-C-G ***
13485079-T-A 11329403-T-A ***
13716396-T-A 11560720-T-A ***
13708847-C-A 11553171-C-A ***
13708822-T-A 11553146-T-A ***
13697138-T-A 11541462-T-A ***
13518272-G-C 11362596-G-C ***
13485520-C-T 11329844-C-T ***
13485376-T-C 11329700-T-C ***
13485091-T-A 11329415-T-A ***
13485090-C-A 11329414-C-A ***
13482939-T-A 11327263-T-A ***
13472129-G-A 11316453-G-A ***
13479774-T-A 11324098-T-A ***
13477150-C-A 11321474-C-A ***
13477136-C-T 11321460-C-T ***
13477114-G-T 11321438-G-T ***
13474801-C-T 11319125-C-T ***
13473737-A-C 11318061-A-C ***
13472799-A-C 11317123-A-C ***
13472348-G-A 11316672-G-A ***
13472141-G-A 11316465-G-A ***
20300868-G-T 18138982-G-T P5_Dst ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B9S75*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs22
Variant counts last updated 2018-07-08 20:58:44.

* BED data not available. Using default values.


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