Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > LSC

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
353954
BigY2
353954
16100518-C-CT 13988638-C-CT P8_Prx A*
20788406-A-G 18626520-A-G P4_Prx ***A*
8447719-C-CT 8579678-C-CT 10×TA*
20759108-G-C 18597222-G-C P4_Prx A*
6156659-C-T 6288618-C-T IR3_Dst A*
26079416-T-C 23933269-T-C P1_Y1 ***A*
24268117-T-C 22121970-T-C P3_b1 ***A*
18282064-A-T 16170184-A-T P6_Prx ***A*
22265053-G-T 20103167-G-T DYZ19 ***A*
19920109-G-A 17808229-G-A P5_Prx ***A*
15784323-A-C 13672443-A-C YY++
15555545-T-C 13443665-T-C YY++
15257469-A-G 13145553-A-G YY++
9945768-A-T 10108159-A-T Y++
14394870-T-C 12274166-T-C YY++
14326716-A-AT 12206010-A-AT ++
14298858-T-C 12178152-T-C YY++
16951131-A-C 14839251-A-C YY++
9871659-G-A 10034050-G-A YY++
9869693-T-G 10032084-T-G YY++
8537138-C-T 8669097-C-T YY++
16248677-T-C 14136797-T-C YY++
19020691-C-T 16908811-C-T YY++
17397426-GGAA-G 15285546-GGAA-G ++
17742172-A-G 15630292-A-G YY++
17768419-A-G 15656539-A-G YY++
8024799-AT-A 8156758-AT-A +
19106228-C-A 16994348-C-A FGC44631 YY++
21215269-C-A 19053383-C-A YY++
21224758-G-A 19062872-G-A YY++
21284690-A-T 19122804-A-T YY++
22125313-C-T 19963427-C-T YY++
22271299-T-G 20109413-T-G DYZ19 ++
22468674-A-T 20306788-A-T DYZ19 ++
23043515-T-C 20881629-T-C YY++
8024802-C-A 8156761-C-A YY+
22686121-C-T 20524235-C-T YY++
7842467-G-A 7974426-G-A YY++
6673834-TA-T 6805793-TA-T 10×A++
7403243-C-T 7535202-C-T YY++
9850515-T-C 10012906-T-C M8378 FGC22000 Z7235 ZS3800 K696 YY++
8024800-T-A 8156759-T-A YY+
14299308-C-T 12178602-C-T CTS2420 Z1289 YY++
8024801-AC-A 8156760-AC-A +
6656499-G-A 6788458-G-A YY++
6719956-A-G 6851915-A-G YY++
7129222-A-T 7261181-A-T YY++
7154325-C-T 7286284-C-T YY++
7280810-T-C 7412769-T-C YY++
14011209-C-A 11890503-C-A **
14025694-AAAGG-A 11904988-AAAGG-A **
14030214-C-G 11909508-C-G **
14065436-A-C 11944730-A-C **
14080119-T-G 11959413-T-G **
14080157-G-A 11959451-G-A **
14097982-T-C 11977276-T-C **
14146942-G-T 12026236-G-T **
14186966-G-A 12066260-G-A **
14212095-A-G 12091389-A-G **
14191977-T-C 12071271-T-C **
14193043-G-T 12072337-G-T **
14198253-C-T 12077547-C-T **
14205018-T-G 12084312-T-G **
14007370-C-T 11886664-C-T **
14224345-A-G 12103639-A-G **
14224395-G-T 12103689-G-T **
14241897-G-A 12121191-G-A **
14261607-G-T 12140901-G-T **
14261609-G-T 12140903-G-T **
14268475-G-T 12147769-G-T **
14007383-C-T 11886677-C-T **
11662558-A-C **
13940261-C-A 11819555-C-A **
13542270-G-T 11386594-G-T **
13478631-C-A 11322955-C-A **
13478636-C-A 11322960-C-A **
13481287-C-A 11325611-C-A **
13484717-G-A 11329041-G-A **
16077543-CAAAAA-C 13965663-CAAAAA-C 36×A**
13484755-G-C 11329079-G-C **
13484765-A-G 11329089-A-G **
13509276-T-G 11353600-T-G **
13521210-T-C 11365534-T-C **
16035772-G-T 13923892-G-T **
13572767-C-A 11417091-C-A **
13857876-G-T 11737170-G-T **
13602567-T-G 11446891-T-G **
13614364-C-A 11458688-C-A **
13641380-C-A 11485704-C-A **
11656304-G-T **
11658216-T-A **
11662282-A-C **
11662540-C-A **
14286013-T-G 12165307-T-G **
11674145-G-T **
13835057-A-C 11714351-A-C **
13856164-A-C 11735458-A-C **
14274051-C-A 12153345-C-A **
14427056-T-C 12306331-T-C **
14297803-C-A 12177097-C-A **
15753272-G-C 13641392-G-C **
15127888-C-A 13015975-C-A **
15200213-C-A 13088299-C-A **
15410522-T-A 13298642-T-A **
15997323-C-A 13885443-C-A **
15964715-C-A 13852835-C-A **
15943759-T-G 13831879-T-G **
15801626-C-A 13689746-C-A **
15798365-A-G 13686485-A-G **
15789213-G-T 13677333-G-T **
15741665-A-C 13629785-A-C **
14931914-C-A 12819979-C-A **
15410561-G-C 13298681-G-C **
15682380-C-A 13570500-C-A **
15661028-C-A 13549148-C-A **
15642870-C-A 13530990-C-A **
15598114-C-A 13486234-C-A **
15557993-A-T 13446113-A-T **
15503167-A-C 13391287-A-C **
15440018-A-C 13328138-A-C **
15429447-C-T 13317567-C-T **
15428385-T-C 13316505-T-C **
15104936-A-C 12993024-A-C **
14871276-G-A 12759346-G-A **
14313531-T-A 12192825-T-A **
14533194-C-A 12421395-C-A **
14355515-G-T 12234810-G-T **
14369722-G-A 12249018-G-A **
14376578-C-A 12255874-C-A **
14432345-C-A 12311618-C-A **
14446427-G-T 12325700-G-T **
14448044-A-T 12327317-A-T **
14464356-C-A 12343629-C-A **
14483840-G-T 12363109-G-T **
14498964-G-T 12387169-G-T **
14525445-T-C 12413646-T-C **
14579421-C-A 12467621-C-A **
14757302-T-G 12645371-T-G **
14589029-C-A 12477229-C-A **
16035740-A-G 13923860-A-G **
14589030-A-C 12477230-A-C **
14689159-C-A 12577225-C-A **
16033334-C-A 13921454-C-A **
14716829-G-T 12604897-G-T **
14721806-G-T 12609874-G-T **
16012304-C-A 13900424-C-A **
13465953-C-G 11310277-C-G **
16012252-C-A 13900372-C-A **
13478602-C-A 11322926-C-A **
13838359-C-A 11717653-C-A **
13463130-T-A 11307454-T-A **
9312878-A-G 9475269-A-G **
8172804-C-T 8304763-C-T **
8253773-A-G 8385732-A-G **
8385155-T-C 8517114-T-C **
8698645-C-A 8830604-C-A **
8738040-G-T 8869999-G-T **
8749275-C-G 8881234-C-G **
8848571-C-A 8980530-C-A **
8855209-CT-C 8987168-CT-C **
9166883-G-C 9329274-G-C **
9181021-G-C 9343412-G-C **
9424390-G-T 9586781-G-T **
8159495-A-G 8291454-A-G **
9457225-G-T 9619616-G-T **
9516983-C-G 9679374-C-G **
9517393-T-G 9679784-T-G **
9725178-G-T 9887569-G-T IR3_Prx **
9927259-C-A 10089650-C-A **
9935815-G-T 10098206-G-T **
9971730-T-G 10134121-T-G **
9971755-G-A 10134146-G-A **
9995959-G-A 10158350-G-A **
10001659-A-G 10164050-A-G **
8172017-C-A 8303976-C-A **
8091560-A-C 8223519-A-C **
10010435-A-C 10172826-A-C **
7418355-T-G 7550314-T-G **
7248649-C-A 7380608-C-A **
7270302-G-C 7402261-G-C **
7296879-G-T 7428838-G-T **
7304683-T-C 7436642-T-C **
7308293-C-A 7440252-C-A **
7309154-A-G 7441113-A-G **
7311147-A-C 7443106-A-C **
7339872-G-T 7471831-G-T **
7341536-T-G 7473495-T-G **
7383737-C-A 7515696-C-A **
7424627-A-G 7556586-A-G **
8080175-A-C 8212134-A-C **
7424628-A-C 7556587-A-C **
7424649-A-C 7556608-A-C **
7615393-T-G 7747352-T-G **
7704814-G-T 7836773-G-T **
7717741-T-TTCC 7849700-T-TTCC **
7756832-C-A 7888791-C-A **
7990933-G-T 8122892-G-T **
8008157-G-A 8140116-G-A **
8017062-C-A 8149021-C-A **
8044677-C-A 8176636-C-A **
10004455-A-G 10166846-A-G **
10022244-C-A 10184635-C-A **
13460151-C-A 11304475-C-A **
10997084-C-T **
10872417-C-A **
16117520-C-A 14005640-C-A P8_Prx **
10873108-CA-C **
10879476-C-A **
10916077-C-A **
10917809-C-A **
10925334-C-A **
10955702-G-T **
10977152-C-A **
10981056-C-A **
11013832-C-A **
10850469-C-G **
11019795-C-G **
13220057-G-T 11064381-G-T **
13229871-G-T 11074195-G-T **
13235528-T-C 11079852-T-C **
13243328-T-C 11087652-T-C **
13291019-A-G 11135343-A-G **
13293634-T-C 11137958-T-C **
13315767-C-A 11160091-C-A **
13318006-A-T 11162330-A-T **
13441612-T-A 11285936-T-A **
10850475-A-C **
10850462-T-G **
10022964-G-T 10185355-G-T **
10748026-C-GTATTA **
10034352-G-A 10196743-G-A **
10049425-G-T 10211816-G-T **
10059367-A-T 10221758-A-T **
10627769-T-C **
10648127-CATCCT-C **
10653020-A-C **
10653103-C-T **
10658527-C-T **
10687546-T-C **
10691244-C-T **
10762057-G-T **
10850457-T-C **
10789576-C-T **
10799596-A-G **
10799621-A-G **
10801659-T-TTGCACTCGTGTTGAC **
10804679-A-G **
10804942-T-C **
10823030-C-A **
10836379-C-A **
10845715-C-CCGTTT **
10850442-T-A **
10873100-TTCCA-T **
16679267-C-T 14567387-C-T **
16117563-G-T 14005683-G-T P8_Prx **
22660986-T-A 20499100-T-A **
21920211-C-A 19758325-C-A **
21935056-C-A 19773170-C-A **
21996250-C-G 19834364-C-G **
22123108-G-T 19961222-G-T **
22194285-A-G 20032399-A-G **
22455495-C-A 20293609-C-A DYZ19 **
22548382-T-A 20386496-T-A **
22561407-C-A 20399521-C-A **
22614808-A-C 20452922-A-C **
22644189-C-A 20482303-C-A **
22668997-G-T 20507111-G-T **
21747804-G-T 19585918-G-T **
22730512-CA-C 20568626-CA-C **
22810552-C-A 20648666-C-A **
22874449-A-G 20712563-A-G **
22903710-GT-G 20741824-GT-G **
22903721-A-C 20741835-A-C **
22950756-C-A 20788870-C-A **
22963780-C-G 20801894-C-G **
22979305-A-C 20817419-A-C **
23058538-A-C 20896652-A-C **
23062211-T-C 20900325-T-C **
21818765-T-G 19656879-T-G **
21738759-G-T 19576873-G-T **
23204982-C-A 21043096-C-A **
21029185-G-T 18867299-G-T P4_Dst **
19721099-C-A 17609219-C-A P5_Prx **
19721116-C-A 17609236-C-A P5_Prx **
19843535-A-G 17731655-A-G P5_Prx **
19868146-T-A 17756266-T-A P5_Prx **
19948185-T-TCTTTCTTG 17836305-T-TCTTTCTTG P5_Prx **
20022290-T-TA 17910410-T-TA P5_Prx **
20653013-A-T 18491127-A-T P4_Prx **
20807108-A-C 18645222-A-C P4_Gap **
20874342-A-T 18712456-A-T P4_Dst **
20874410-C-A 18712524-C-A P4_Dst **
21175575-C-A 19013689-C-A **
21703016-C-A 19541130-C-A **
21240536-T-C 19078650-T-C **
21297920-C-A 19136034-C-A **
21323719-T-A 19161833-T-A **
21367711-C-T 19205825-C-T **
21394669-C-T 19232783-C-T **
21457185-T-C 19295299-T-C **
21457640-C-A 19295754-C-A **
21458066-T-G 19296180-T-G **
21482775-T-A 19320889-T-A **
21497945-C-A 19336059-C-A **
23100716-T-C 20938830-T-C **
23311419-C-A 21149533-C-A **
19644735-G-T 17532855-G-T P5_Prx **
28713729-A-C 26567582-A-C **
28560822-A-G 26414675-A-G **
28602526-A-T 26456379-A-T **
28627206-T-G 26481059-T-G **
28635028-C-A 26488881-C-A **
28649161-A-T 26503014-A-T **
28656072-GA-G 26509925-GA-G **
28658632-G-T 26512485-G-T **
28700468-A-C 26554321-A-C **
28710861-T-G 26564714-T-G **
28713704-A-C 26567557-A-C **
28714393-A-G 26568246-A-G **
28507251-A-G 26361104-A-G **
28779621-A-T 26633474-A-T **
28805800-G-A 26659653-G-A **
28805803-G-GAGTAA 26659656-G-GAGTAA **
28805822-G-C 26659675-G-C **
56827596-C-CCATT **
56837471-T-C **
56866616-C-A **
56867812-G-A **
56874600-T-G **
56879636-G-T **
28532995-C-A 26386848-C-A **
27616489-A-G 25470342-A-G P1_Y2 **
23340912-C-A 21179026-C-A **
24401956-C-A 22255809-C-A **
23412549-C-A 21250663-C-A **
23447007-C-T 21285121-C-T **
23568953-C-A 21407067-C-A **
23768620-C-A 21606734-C-A **
23775522-T-G 21613636-T-G **
23775527-T-G 21613641-T-G **
23808188-G-A 21646302-G-A **
23983737-G-T 21837590-G-T **
24331500-G-T 22185353-G-T P3_t1 **
24363723-T-G 22217576-T-G **
24421997-G-A 22275850-G-A **
25998836-GAGA-G 23852689-GAGA-G P1_Y1 **
24466055-C-A 22319908-C-A Y22639 **
24482131-C-A 22335984-C-A **
24523499-C-A 22377352-C-A **
24878310-T-A 22732163-T-A g1 **
24878345-G-C 22732198-G-C g1 **
24891870-C-A 22745723-C-A g1 **
24904592-A-G 22758445-A-G g1 **
24904606-G-T 22758459-G-T g1 **
24904624-G-T 22758477-G-T g1 **
25850128-C-A 23703981-C-A P1_Y1 **
25998811-G-T 23852664-G-T P1_Y1 **
19721080-C-A 17609200-C-A P5_Prx **
19544045-A-G 17432165-A-G **
16232531-T-G 14120651-T-G **
17310881-C-T 15199001-C-T **
17101728-G-T 14989848-G-T **
17103374-C-G 14991494-C-G **
17125902-C-A 15014022-C-A **
17135627-A-C 15023747-A-C **
17135690-G-C 15023810-G-C **
17155105-T-G 15043225-T-G **
17158478-C-A 15046598-C-A **
17210928-C-A 15099048-C-A **
17218187-C-A 15106307-C-A **
17269698-G-T 15157818-G-T **
17326818-C-A 15214938-C-A **
16973899-G-T 14862019-G-T **
17363349-T-A 15251469-T-A **
17381320-G-C 15269440-G-C **
17385599-A-G 15273719-A-G **
17406819-C-A 15294939-C-A **
17464684-C-T 15352804-C-T **
17467827-C-A 15355947-C-A **
17500109-T-C 15388229-T-C **
17505090-A-C 15393210-A-C **
17505567-T-C 15393687-T-C **
17513907-C-A 15402027-C-A **
17101657-C-T 14989777-C-T **
16952914-C-A 14841034-C-A **
17551553-A-T 15439673-A-T **
16486726-G-T 14374846-G-T **
16259183-C-A 14147303-C-A **
16319069-T-C 14207189-T-C **
16320043-A-G 14208163-A-G **
16344456-C-A 14232576-C-A **
16344488-T-G 14232608-T-G A3407 **
16412304-A-C 14300424-A-C **
16421024-C-A 14309144-C-A **
16432589-T-C 14320709-T-C **
16462723-G-T 14350843-G-T **
16480966-A-G 14369086-A-G **
16489934-A-C 14378054-A-C **
16710383-C-A 14598503-C-A **
16498013-C-A 14386133-C-A **
16500463-C-A 14388583-C-A **
16598943-C-G 14487063-C-G **
16623562-G-A 14511682-G-A **
16623912-C-G 14512032-C-G **
16625890-T-G 14514010-T-G **
16662475-T-G 14550595-T-G **
16662479-T-C 14550599-T-C **
16676059-T-C 14564179-T-C **
16682621-T-G 14570741-T-G **
17545643-C-A 15433763-C-A **
17552087-A-G 15440207-A-G **
19538383-T-A 17426503-T-A **
19228868-G-T 17116988-G-T **
18796525-A-G 16684645-A-G **
18816861-A-G 16704981-A-G **
18924806-A-T 16812926-A-T **
18987119-A-G 16875239-A-G **
19022302-C-A 16910422-C-A **
19122113-T-A 17010233-T-A **
19123353-C-A 17011473-C-A **
19128702-C-A 17016822-C-A **
19138593-G-T 17026713-G-T **
19138826-T-G 17026946-T-G **
19233129-G-T 17121249-G-T **
18703816-C-A 16591936-C-A **
19233161-G-T 17121281-G-T **
19253367-TG-T 17141487-TG-T **
19365424-T-G 17253544-T-G **
19429740-C-A 17317860-C-A **
19444213-G-C 17332333-G-C **
19444217-C-T 17332337-C-T **
19444249-A-G 17332369-A-G **
19475120-C-A 17363240-C-A **
19479157-T-C 17367277-T-C **
19490858-C-A 17378978-C-A **
18780331-C-A 16668451-C-A **
18701700-C-A 16589820-C-A **
17618331-C-A 15506451-C-A **
18147565-G-T 16035685-G-T **
17685858-G-T 15573978-G-T **
17718464-G-T 15606584-G-T **
17813440-G-A 15701560-G-A **
17952693-C-A 15840813-C-A **
18007453-G-T 15895573-G-T P7_Gap **
18020762-T-C 15908882-T-C **
18022263-A-C 15910383-A-C **
18079381-G-T 15967501-G-T **
18092867-G-A 15980987-G-A **
18137300-T-A 16025420-T-A **
18188160-G-T 16076280-G-T **
18625479-G-T 16513599-G-T **
18188437-G-T 16076557-G-T **
18188439-G-T 16076559-G-T **
18261743-G-C 16149863-G-C **
18284659-C-T 16172779-C-T P6_Prx **
18317461-T-TAAA 16205581-T-TAAA P6_Prx 15×A**
18340573-C-T 16228693-C-T P6_Prx **
18391866-T-C 16279986-T-C P6_Gap **
18480439-A-T 16368559-A-T P6_Dst **
18527777-T-C 16415897-T-C P6_Dst **
18572760-C-A 16460880-C-A **
18621658-C-A 16509778-C-A **
7239746-T-G 7371705-T-G **
7235237-T-C 7367196-T-C **
7051-T-G **
21863145-C-A 19701259-C-A **
14571212-C-A 12459412-C-A **
15940305-TCAAAAA-T 13828425-TCAAAAA-T **
22137082-C-A 19975196-C-A **
13859529-G-T 11738823-G-T **
17425079-C-A 15313199-C-A **
2986440-C-A 3118399-C-A **
13542294-T-G 11386618-T-G **
5310336-C-A 5442295-C-A **
22995398-G-GT 20833512-G-GT **
10648125-T-C **
15264182-C-A 13152272-C-A **
17187565-TC-T 15075685-TC-T **
10679307-C-A **
6944941-C-A 7076900-C-A **
28147148-G-T 26001001-G-T P1_b4 **
3267327-C-A 3399286-C-A **
4444533-G-T 4576492-G-T YFS2910483 **
5792947-G-T 5924906-G-T **
14736113-C-A 12624181-C-A **
17478900-C-A 15367020-C-A **
23381881-C-A 21219995-C-A **
10932952-C-A **
14949744-C-A 12837818-C-A **
18389329-C-A 16277449-C-A P6_Gap **
13200366-C-A 11044690-C-A **
19146528-C-A 17034648-C-A **
2817047-A-C 2949006-A-C **
5523002-A-G 5654961-A-G **
18926872-C-CAA 16814992-C-CAA 17×A**
5068546-G-T 5200505-G-T **
18911045-A-C 16799165-A-C **
10985176-T-A **
8343802-C-A 8475761-C-A **
23255164-C-A 21093278-C-A **
22614824-C-A 20452938-C-A **
19847603-G-T 17735723-G-T P5_Prx **
5344750-C-A 5476709-C-A **
7252220-A-G 7384179-A-G **
10685749-G-A **
21234829-C-A 19072943-C-A **
26428136-T-TG 24281989-T-TG P1_Y1 **
10892535-C-T **
5205226-C-A 5337185-C-A **
13644095-C-A 11488419-C-A **
13472227-C-A 11316551-C-A **
16319350-G-A 14207470-G-A **
2767983-G-T 2899942-G-T **
24405918-G-T 22259771-G-T **
13565595-GA-G 11409919-GA-G 10×A**
10892528-C-T **
4703663-C-A 4835622-C-A **
14280000-C-A 12159294-C-A **
4582326-C-A 4714285-C-A **
11031960-G-T **
4113104-C-A 4245063-C-A **
9451345-T-C 9613736-T-C **
13894127-C-A 11773421-C-A **
13542268-G-T 11386592-G-T **
10892526-T-C **
10892545-T-C **
7218351-G-T 7350310-G-T **
10892571-T-G **
21248522-A-T 19086636-A-T **
5968339-C-A 6100298-C-A Y60663 **
25201240-G-T 23055093-G-T g1 **
5844559-C-A 5976518-C-A **
22189087-C-A 20027201-C-A **
11001407-C-T **
28483865-C-A 26337718-C-A **
7092412-C-A 7224371-C-A **
10977217-C-A **
9427648-G-T 9590039-G-T **
23377408-C-A 21215522-C-A **
10892538-C-A **
14245150-C-A 12124444-C-A **
5969735-C-A 6101694-C-A **
23954180-G-T 21808033-G-T **
12370731-C-A **
13489340-T-G 11333664-T-G **
14648595-C-A 12536660-C-A **
15177068-C-A 13065154-C-A **
13476047-C-A 11320371-C-A **
10032908-C-A 10195299-C-A **
3965308-T-G 4097267-T-G **
4229168-G-T 4361127-G-T **
19597202-T-TTA 17485322-T-TTA P5_Prx 12×TTA**
15157268-C-A 13045355-C-A **
10796124-T-TTAAAC **
7832380-C-A 7964339-C-A **
10785242-C-A **
7717739-T-TC 7849698-T-TC **
13472208-C-A 11316532-C-A **
15600136-G-T 13488256-G-T **
22092712-C-A 19930826-C-A **
23762763-C-A 21600877-C-A **
18189528-C-A 16077648-C-A **
19547453-C-CA 17435573-C-CA 24×A**
9377520-C-A 9539911-C-A **
22027791-C-A 19865905-C-A **
17503751-G-T 15391871-G-T **
10770494-CTTCCA-C **
8431228-CTTT-C 8563187-CTTT-C 17×T**
10744476-T-TCCAC **
10744488-C-CCTTTAT **
14324920-TG-T 12204214-TG-T **
7996437-C-A 8128396-C-A **
13224495-C-A 11068819-C-A **
10792765-T-C **
17569147-C-A 15457267-C-A **
8216406-CTTTTTTT-C 8348365-CTTTTTTT-C 16×T**
13238367-C-A 11082691-C-A **
10988542-TTCCAC-T **
10988555-C-T **
10988571-A-G **
13472231-CA-C 11316555-CA-C **
23198007-C-A 21036121-C-A **
23831281-GAC-G 21669395-GAC-G **
13482561-T-C 11326885-T-C **
16312432-C-A 14200552-C-A **
21783843-C-A **
18738135-G-T 16626255-G-T **
10969844-C-A **
7336914-C-A 7468873-C-A **
10792745-T-G **
13566948-C-CAT 11411272-C-CAT 12×AT**
13838343-C-A 11717637-C-A **
7996768-A-G 8128727-A-G ****
8048556-CAGAG-C 8180515-CAGAG-C 13×AG**
7202359-G-GT 7334318-G-GT FGC31444 8×T**
7425119-A-C 7557078-A-C **
14495831-GGT-G 12384028-GGT-G 17×GT**
58976357-C-CTCCACTCCACTCCAT 56830210-C-CTCCACTCCACTCCAT **
17782592-G-T 15670712-G-T **
7239599-G-A 7371558-G-A CTS1153 ****
59012740-G-C 56866593-G-C **
10776598-A-T **
59013964-C-A 56867817-C-A **
28803658-C-A 26657511-C-A **
19486930-AT-A 17375050-AT-A 9×T**
22455501-T-A 20293615-T-A DYZ19 **
13465944-C-G 11310268-C-G **
19091421-A-T 16979541-A-T ****
22446586-G-C 20284700-G-C DYZ19 *****
5178199-CA-C 5310158-CA-C 15×A**
2806240-C-G 2938199-C-G **
7319154-C-A 7451113-C-A **
7019165-C-A 7151124-C-A **
22236842-G-T 20074956-G-T DYZ19 **
23138586-C-A 20976700-C-A **
14226672-C-A 12105966-C-A **
16629335-CAAAAA-C 14517455-CAAAAA-C 19×A**
3849492-C-A 3981451-C-A **
10776154-C-G **
15963963-A-C 13852083-A-C **
7093672-C-A 7225631-C-A **
11001438-A-T **
11001438-A-ACCT **
17842369-C-A 15730489-C-A **
16180919-C-A 14069039-C-A **
18768306-C-A 16656426-C-A **
21113037-C-A 18951151-C-A **
2788352-C-A 2920311-C-A **
10796565-G-T **
3681291-G-T 3813250-G-T **
28771564-C-A 26625417-C-A **
15697089-C-A 13585209-C-A 9×AATA**
17030605-G-T 14918725-G-T **
22797500-C-A 20635614-C-A **
10673810-T-C **
18647667-C-A 16535787-C-A **
6454448-GAA-G 6586407-GAA-G 12×A**
7564319-C-CT 7696278-C-CT 8×T**
11673764-C-A **
14953422-C-A 12841496-C-A **
16432513-A-ATG 14320633-A-ATG 10×TG**
17480265-C-A 15368385-C-A **
10812295-C-T **
13881206-C-A 11760500-C-A **
17093769-C-A 14981889-C-A **
16629305-C-A 14517425-C-A **
26100567-T-A 23954420-T-A P1_Y1 **
10801671-C-G **
14507000-C-A 12395205-C-A **
14405867-C-A 12285164-C-A **
14858612-C-A 12746678-C-A **
13234369-C-A 11078693-C-A **
17135636-C-A 15023756-C-A **
10812257-A-G **
3759247-C-A 3891206-C-A **
19479149-C-A 17367269-C-A **
10892547-C-G **
10744475-A-ACCACAC **
14356292-C-A 12235587-C-A **
16020779-C-A 13908899-C-A **
7242514-C-A 7374473-C-A **
18035697-AG-A 15923817-AG-A **
21503349-C-A 19341463-C-A **
13472228-A-G 11316552-A-G **
14224336-C-A 12103630-C-A **
5171683-G-T 5303642-G-T **
4703668-C-G 4835627-C-G **
4715524-C-A 4847483-C-A **
4749934-A-G 4881893-A-G **
4885806-C-A 5017765-C-A **
4936964-T-C 5068923-T-C **
5022006-GGAA-G 5153965-GGAA-G **
5131197-C-A 5263156-C-A **
5131291-C-A 5263250-C-A **
5185277-C-A 5317236-C-A **
4559240-C-T 4691199-C-T **
5230765-T-G 5362724-T-G **
5301240-G-T 5433199-G-T **
5344951-G-T 5476910-G-T **
5448612-A-G 5580571-A-G **
5450222-A-C 5582181-A-C **
5450237-A-C 5582196-A-C **
5471965-AAAAG-A 5603924-AAAAG-A 4×AAAG**
5472708-C-A 5604667-C-A **
5488601-A-G 5620560-A-G **
4671785-G-A 4803744-G-A **
4459816-T-C 4591775-T-C **
5504945-T-G 5636904-T-G **
4215510-C-T 4347469-C-T **
3711547-C-A 3843506-C-A **
3800004-C-G 3931963-C-G **
3844372-C-A 3976331-C-A **
3849455-A-T 3981414-A-T **
3865497-G-T 3997456-G-T **
4064327-A-C 4196286-A-C **
4138525-G-T 4270484-G-T **
4212616-T-C 4344575-T-C **
4215541-T-C 4347500-T-C **
4448965-C-A 4580924-C-A **
4257024-G-T 4388983-G-T **
4257419-A-C 4389378-A-C **
4257421-A-C 4389380-A-C **
4327623-ATGTTTTG-A 4459582-ATGTTTTG-A **
4392399-C-A 4524358-C-A **
6976389-C-A 7108348-C-A **
4416396-G-T 4548355-G-T **
4444520-C-G 4576479-C-G **
4447750-C-A 4579709-C-A **
5488679-C-A 5620638-C-A **
6957688-G-T 7089647-G-T **
3704418-C-A 3836377-C-A **
6748021-T-G 6879980-T-G **
5894512-C-A 6026471-C-A **
5901036-C-A 6032995-C-A **
6801101-C-A 6933060-C-A **
5966101-C-A 6098060-C-A **
5968360-A-C 6100319-A-C **
5969711-T-G 6101670-T-G **
6007047-G-A 6139006-G-A **
6152087-T-A 6284046-T-A IR3_Dst **
6255341-C-A 6387300-C-A IR3_Dst **
5824689-C-A 5956648-C-A **
6286707-T-TTA 6418666-T-TTA IR3_Dst **
6734714-C-A 6866673-C-A **
6419066-G-T 6551025-G-T **
6446806-G-T 6578765-G-T **
6692938-T-G 6824897-T-G **
6639336-G-T 6771295-G-T **
6688731-G-T 6820690-G-T **
6692933-A-G 6824892-A-G **
6688817-C-G 6820776-C-G **
5851367-G-A 5983326-G-A **
5816954-T-G 5948913-T-G **
5518672-G-T 5650631-G-T **
6839651-C-G 6971610-C-G **
6953244-C-A 7085203-C-A **
5523013-G-T 5654972-G-T **
5560015-G-T 5691974-G-T **
5562294-C-A 5694253-C-A **
6923180-G-T 7055139-G-T **
6917689-G-T 7049648-G-T **
6844028-C-A 6975987-C-A **
6844000-G-T 6975959-G-T **
5572777-G-T 5704736-G-T **
5792948-G-C 5924907-G-C **
6821133-C-T 6953092-C-T **
5576727-C-A 5708686-C-A **
5630097-A-G 5762056-A-G **
5631439-G-T 5763398-G-T **
5633449-G-T 5765408-G-T **
5698958-G-T 5830917-G-T **
5720172-A-G 5852131-A-G **
5761498-C-T 5893457-C-T **
5761539-C-A 5893498-C-A **
3709659-T-A 3841618-T-A **
3912851-C-A 4044810-C-A **
2785406-G-T 2917365-G-T **
2788392-G-C 2920351-G-C **
2774684-A-C 2906643-A-C **
2785401-G-T 2917360-G-T **
27898409-T-TG 25752262-T-TG P1_Y2 **
4093402-C-A 4225361-C-A **
7113849-C-A 7245808-C-A **
7201175-G-T 7333134-G-T **
2843818-C-A 2975777-C-A **
7131230-C-A 7263189-C-A **
7101064-G-T 7233023-G-T **
2850957-C-A 2982916-C-A **
2876830-G-T 3008789-G-T **
6975984-T-C 7107943-T-C **
7093660-T-C 7225619-T-C **
2947730-A-G 3079689-A-G **
2959348-C-A 3091307-C-A **
27896020-C-A 25749873-C-A P1_Y2 **
2763789-AAAAAC-A 2895748-AAAAAC-A **
16405449-C-A 14293569-C-A **
4244459-C-A 4376418-C-A **
10873097-C-G **
13871439-C-A 11750733-C-A **
7138202-A-C 7270161-A-C **
10893826-C-A **
13643019-C-A 11487343-C-A **
19081149-C-A 16969269-C-A **
10648167-A-C **
2738716-C-A 2870675-C-A **
7172573-A-T 7304532-A-T **
10845713-T-G **
20019186-T-G 17907306-T-G P5_Prx **
7175979-T-G 7307938-T-G **
10776156-A-ACCT **
23439835-C-A 21277949-C-A **
16049084-C-A 13937204-C-A **
22614837-C-A 20452951-C-A **
14442900-C-A 12322173-C-A **
2979546-C-A 3111505-C-A **
3627453-T-A 3759412-T-A **
3600036-C-T 3731995-C-T **
7039575-T-C 7171534-T-C **
7035666-C-T 7167625-C-T **
7021318-G-T 7153277-G-T **
3614831-C-A 3746790-C-A **
7242583-C-A 7374542-C-A **
10985205-A-C **
7186354-G-A 7318313-G-A **
3531544-T-G 3663503-T-G **
7190596-C-A 7322555-C-A **
3660511-G-T 3792470-G-T **
3679651-T-A 3811610-T-A **
14424926-C-A 12304201-C-A **
7205544-C-A 7337503-C-A **
17218207-C-A 15106327-C-A **
7012423-C-T 7144382-C-T **
3531555-T-G 3663514-T-G **
3500966-C-A 3632925-C-A **
3467241-C-A 3599200-C-A **
3389762-A-T 3521721-A-T **
8723637-C-A 8855596-C-A **
3006909-C-A 3138868-C-A **
3052730-T-C 3184689-T-C **
3052818-A-T 3184777-A-T **
3116179-A-T 3248138-A-T **
7061967-C-A 7193926-C-A **
3142083-G-T 3274042-G-T **
28754936-C-A 26608789-C-A **
14441996-C-A 12321269-C-A **
8321578-C-A 8453537-C-A **
3171125-C-A 3303084-C-A **
3220116-G-T 3352075-G-T **
3271970-T-C 3403929-T-C **
3344880-T-G 3476839-T-G **
7534429-GA-G 7666388-GA-G **
56827567-G-C ***
56829980-TTCCACTCCACTCCAG-T ***
23702717-C-T 21540831-C-T ***
14486459-G-GGT 12365728-G-GGT 9×GT***
22301365-T-A 20139479-T-A DYZ19 ***
8125045-A-AG 8257004-A-AG ***
24906896-C-T 22760749-C-T g1 ***
7018027-AT-A,ATT 7149986-AT-A,ATT 24×T***
13489184-C-T 11333508-C-T ***
13447315-TCCACTCC-T,TCCACT 11291639-TCCACTCC-T,TCCACT ***
10776564-T-C ***
22333738-G-A 20171852-G-A DYZ19 ***
22360589-T-A 20198703-T-A DYZ19 ***
22361239-A-T 20199353-A-T DYZ19 ***
2970336-GGTGTGTGT-G 3102295-GGTGTGTGT-G 18×GT***
13458761-T-A 11303085-T-A ***
22447325-G-T 20285439-G-T DYZ19 ******
7411527-C-A 7543486-C-A ***
58975213-T-C 56829066-T-C ***
8112709-G-T 8244668-G-T ***
58975084-T-G 56828937-T-G ***
25016877-T-A 22870730-T-A g1 ***
18740840-TTA-T 16628960-TTA-T ***
26228967-A-G 24082820-A-G P1_Y1 ***
22511112-T-A 20349226-T-A DYZ19 ***
7733623-C-A 7865582-C-A ***
22277377-C-A 20115491-C-A DYZ19 ***
58975149-T-G 56829002-T-G ***
6971506-C-A 7103465-C-A ***
17007110-GCA-G 14895230-GCA-G ***
10749201-G-T ***
23541408-CAAAA-C 21379522-CAAAA-C 17×A***
10657387-T-G ***
10850281-C-T ***
8599677-ATTTT-A,AT 8731636-ATTTT-A,AT 17×T***
16552696-C-A 14440816-C-A ***
13482529-G-A 11326853-G-A ***
13482531-G-A 11326855-G-A ***
13482532-A-T 11326856-A-T ***
17311044-C-A 15199164-C-A ***
3602892-G-T 3734851-G-T ***
13713648-C-A 11557972-C-A ***
15380278-A-C 13268398-A-C ***
13446798-C-G 11291122-C-G ***
16927238-G-A 14815358-G-A FGC15098 Y3675 ***
13928497-C-A 11807791-C-A ***
2773576-G-T 2905535-G-T ***
23126263-A-G 20964377-A-G ***
16598496-C-A 14486616-C-A ***
7986643-C-A 8118602-C-A ***
13482519-G-A 11326843-G-A ***
14689038-C-A 12577104-C-A ***
16370822-C-A 14258942-C-A ***
56827588-T-A ***
16028706-C-A 13916826-C-A ***
28605725-C-A 26459578-C-A ***
15863986-C-A 13752106-C-A ***
15858540-C-T 13746660-C-T ***
56827565-G-T ***
17883210-GA-G 15771330-GA-G ***
14467565-C-A 12346834-C-A ***
13458698-C-A 11303022-C-A ***
15124177-C-A 13012264-C-A ***
13142212-C-T 10631698-C-T ***
13482527-C-T 11326851-C-T ***
13482512-C-T 11326836-C-T ***
8637409-G-A 8769368-G-A ***
9847317-TG-T 10009708-TG-T ***
22800620-G-A 20638734-G-A ***
8773259-G-T 8905218-G-T ***
6688915-CA-C 6820874-CA-C 8×A***
13489119-GCTGGATGAGCTC-G,GCTGGATGAACTC 11333443-GCTGGATGAGCTC-G,GCTGGATGAACTC ***
9528715-C-A 9691106-C-A ***
56828938-C-T ***
10036240-C-A 10198631-C-A ***
10626564-C-A ***
10631651-A-T ***
20458512-C-T 18296626-C-T P5_Dst ***
10631656-C-A ***
10631671-C-T ***
10647065-C-A ***
10682529-T-A ***
10657377-T-TTAAACTTCAC ***
19625250-C-A 17513370-C-A P5_Prx ***
10682515-TCCATTCCATTC-T ***
21457516-G-T 19295630-G-T ***
10657395-C-A ***
10764643-T-A,C ***
19226188-AATAGATAGATAGATAGATAG-A 17114308-AATAGATAGATAGATAGATAG-A 14×ATAG***
19226208-G-A 17114328-G-A ***
14696490-C-A 12584556-C-A ***
18920026-T-C 16808146-T-C ***
13447755-A-C 11292079-A-C ***
2708749-G-A 2840708-G-A ***
4070620-T-C 4202579-T-C ***
18015034-C-A 15903154-C-A P7_Dst ***
7218660-G-T 7350619-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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