Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > ZZ45 > Z36/S206 > FGC6417

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
479075
BigY2
479075
22291095-G-T 20129209-G-T DYZ19 ***A*
22454276-G-A 20292390-G-A DYZ19 ***A*
22456315-T-A 20294429-T-A DYZ19 ***A*
25861053-G-A 23714906-G-A P1_Y1 ***A*
26121327-A-C 23975180-A-C P1_Y1 ***A*
26130919-G-C 23984772-G-C P1_Y1 ***A*
26153345-G-A 24007198-G-A P1_Y1 ***A*
19795623-C-G 17683743-C-G P5_Prx A*
22314160-C-T 20152274-C-T DYZ19 A*
6742162-A-G 6874121-A-G BY61013 YY++
6779930-C-T 6911889-C-T BY61249 YY++
7781747-T-A 7913706-T-A BY67584 YY++
8800309-T-TA 8932268-T-TA 9×A++
13652706-T-C 11497030-T-C BY50750 DYZ17 ++
14082875-T-C 11962169-T-C BY92865 YY++
14469268-G-A 12348537-G-A BY95936 YY++
14628171-A-C 12516239-A-C BY96853 YY++
15130703-C-G 13018790-C-G BY99843 YY++
15743498-C-T 13631618-C-T BY103767 Y**+
15782700-T-A 13670820-T-A BY104081 YY++
16938863-C-A 14826983-C-A BY111256 YY++
17302324-C-A 15190444-C-A BY113634 YY++
17926309-G-A 15814429-G-A BY118509 YY++
19010309-T-A 16898429-T-A BY125521 YY++
19039312-G-A 16927432-G-A BY125712 YY++
19226692-C-T 17114812-C-T BY127451 YY++
19294077-TTG-T 17182197-TTG-T ++
22465985-G-A 20304099-G-A BY221643 DYZ19 ++
23502639-A-C 21340753-A-C BY145803 YY++
28601248-C-T 26455101-C-T BY150745 Y++
22147728-ATCTTTCTTTTCTTTTCTTT-A,ATCTTTTCTTTTCTTTTCTTT 19985842-ATCTTTCTTTTCTTTTCTTT-A,ATCTTTTCTTTTCTTTTCTTT ****
22316654-G-A 20154768-G-A ZS5692 DYZ19 ****
22319865-T-A 20157979-T-A DYZ19 ****
7451280-C-T 7583239-C-T IR1_L **
8067448-C-T 8199407-C-T Z2722 **
16464470-T-C 14352590-T-C CTS5742 M1121 ****
22965096-G-A 20803210-G-A F25643 **
7179890-C-A 7311849-C-A **
22221898-GT-G 20060012-GT-G DYZ19 *****
58996590-C-T 56850443-C-T **
58996936-A-G 56850789-A-G **
5066046-C-A 5198005-C-A **
8353303-C-A 8485262-C-A **
17597920-GAA-G 15486040-GAA-G 11×A**
6646039-C-A 6777998-C-A **
8720544-C-A 8852503-C-A **
4357555-G-T 4489514-G-T **
7384672-C-A 7516631-C-A **
10688036-A-G **
16062807-C-A 13950927-C-A **
26154001-G-T 24007854-G-T P1_Y1 **
8167845-C-A 8299804-C-A **
14424906-C-A 12304181-C-A **
15424498-G-C 13312618-G-C **
10940320-C-A **
56847913-C-A **
6828661-C-A 6960620-C-A **
18412222-C-A 16300342-C-A P6_Gap **
16598973-C-A 14487093-C-A **
9414676-G-C 9577067-G-C **
10949893-C-T **
10940318-T-A **
10684214-C-T **
10791248-C-A **
21515859-T-A 19353973-T-A **
16445775-C-A 14333895-C-A **
5687495-C-A 5819454-C-A **
14272943-T-G 12152237-T-G **
10940326-C-T **
15080637-C-A 12968727-C-A **
9927256-C-A 10089647-C-A **
16645690-C-A 14533810-C-A **
21162458-C-A 19000572-C-A **
11031460-C-A **
17672167-C-A 15560287-C-A **
10949885-A-T **
13880769-C-A 11760063-C-A **
15113517-C-A 13001604-C-A **
14992378-C-A 12880463-C-A **
56839720-G-T **
5443896-C-A 5575855-C-A **
10670749-C-A **
56850481-A-G **
4976859-G-T 5108818-G-T **
14376444-C-A 12255740-C-A **
10688004-C-T **
11010387-C-A **
17206584-C-A 15094704-C-A **
21206914-C-A 19045028-C-A **
17534763-C-A 15422883-C-A **
4070721-C-A 4202680-C-A **
3681405-G-T 3813364-G-T **
5781886-C-A 5913845-C-A **
18723140-C-A 16611260-C-A **
19280816-C-A 17168936-C-A **
10940339-TCCACG-T **
7011592-C-A 7143551-C-A **
13317667-C-A 11161991-C-A **
21154009-C-A 18992123-C-A **
8977012-C-T 9139403-C-T **
16085528-C-A 13973648-C-A **
15333960-C-A 13222078-C-A **
56850664-G-T **
19235652-C-A 17123772-C-A **
5687569-C-A 5819528-C-A **
18286807-C-A 16174927-C-A P6_Prx **
13929201-C-A 11808495-C-A **
15073159-C-A 12961249-C-A **
24458766-A-G 22312619-A-G **
14077925-C-A 11957219-C-A **
14698417-C-A 12586483-C-A **
10940367-A-C **
10940372-A-G **
10940376-C-G **
10940386-C-CACTAA **
10940391-C-G **
15999749-G-T 13887869-G-T **
5829252-C-A 5961211-C-A **
56838254-G-T **
13891537-C-A 11770831-C-A **
15131673-C-A 13019760-C-A **
2681062-C-A 2813021-C-A **
3285067-G-T 3417026-G-T **
6919880-C-A 7051839-C-A **
4213171-C-A 4345130-C-A **
10940355-C-A **
27540893-G-T 25394746-G-T P1_Y2 **
9513649-C-A 9676040-C-A **
10050257-C-A 10212648-C-A **
5185453-C-A 5317412-C-A **
10961105-C-A **
17135732-C-A 15023852-C-A **
3875977-C-A 4007936-C-A **
5769472-G-T 5901431-G-T **
14379383-C-A 12258679-C-A **
15898826-C-A 13786946-C-A **
6085447-C-A 6217406-C-A **
18194283-T-C 16082403-T-C **
21435190-CTTTTT-C 19273304-CTTTTT-C 15×T**
14539309-C-A 12427510-C-A **
16929991-C-A 14818111-C-A **
28463940-C-A 26317793-C-A **
15127903-C-A 13015990-C-A **
7436409-C-A 7568368-C-A **
17752033-C-A 15640153-C-A **
14712548-G-T 12600615-G-T **
13866197-C-A 11745491-C-A DYZ17 **
28762538-C-A 26616391-C-A **
21387165-C-A 19225279-C-A **
15423472-C-T 13311592-C-T **
16034429-C-A 13922549-C-A **
23019830-G-C 20857944-G-C **
30950-C-A **
13856432-C-A 11735726-C-A DYZ17 **
14027182-C-A 11906476-C-A **
9088982-C-A 9251373-C-A **
23465918-G-T 21304032-G-T **
10964689-C-A **
17183186-C-A 15071306-C-A **
2676142-T-C 2808101-T-C **
2885489-G-T 3017448-G-T **
2909678-T-C 3041637-T-C **
3129493-C-A 3261452-C-A **
3165251-G-C 3297210-G-C **
3218718-A-C 3350677-A-C **
3218727-G-C 3350686-G-C **
3218742-G-A 3350701-G-A **
3244459-C-G 3376418-C-G **
3285119-A-G 3417078-A-G **
3330965-A-C 3462924-A-C **
3330971-G-C 3462930-G-C **
3330985-T-C 3462944-T-C **
3334036-C-A 3465995-C-A **
3334381-A-G 3466340-A-G **
3379985-C-A 3511944-C-A **
3391666-C-A 3523625-C-A **
3398509-C-A 3530468-C-A **
3536277-A-T 3668236-A-T **
3614625-T-G 3746584-T-G **
3696575-G-T 3828534-G-T **
3728621-G-A 3860580-G-A **
3835145-A-G 3967104-A-G **
3966826-G-T 4098785-G-T **
3986018-C-G 4117977-C-G **
4101286-A-G 4233245-A-G **
4112838-T-A 4244797-T-A **
4244369-C-A 4376328-C-A **
4271539-A-C 4403498-A-C **
4279871-C-T 4411830-C-T **
4300171-A-G 4432130-A-G **
4328652-G-T 4460611-G-T **
4438623-C-A 4570582-C-A **
4440179-G-T 4572138-G-T **
4489222-T-C 4621181-T-C **
4540751-A-C 4672710-A-C **
4596744-T-A 4728703-T-A **
4735964-A-C 4867923-A-C **
4804127-C-A 4936086-C-A **
4879392-C-A 5011351-C-A **
4888401-T-G 5020360-T-G **
4895543-G-T 5027502-G-T **
4961591-A-T 5093550-A-T **
4969130-A-G 5101089-A-G **
4995509-G-A 5127468-G-A **
4998281-G-T 5130240-G-T **
5022552-G-A 5154511-G-A **
5027875-C-A 5159834-C-A **
5046232-G-T 5178191-G-T **
5076771-C-A 5208730-C-A **
5200760-T-A 5332719-T-A **
5203336-G-T 5335295-G-T **
5219731-A-C 5351690-A-C **
5220438-C-T 5352397-C-T **
5248971-C-A 5380930-C-A **
5293926-T-G 5425885-T-G **
5313694-T-C 5445653-T-C **
5396656-C-A 5528615-C-A **
5397314-T-G 5529273-T-G **
5443046-C-T 5575005-C-T **
5549107-G-T 5681066-G-T **
5549180-A-G 5681139-A-G **
5589399-C-A 5721358-C-A **
5599936-G-T 5731895-G-T **
5625258-G-A 5757217-G-A **
5760894-C-A 5892853-C-A **
5817708-C-A 5949667-C-A **
5817890-C-A 5949849-C-A **
5817895-T-G 5949854-T-G **
5873442-C-A 6005401-C-A **
6493123-G-GA 6625082-G-GA 8×A**
6655069-C-A 6787028-C-A **
6692730-T-A 6824689-T-A **
6692737-G-A 6824696-G-A **
6692751-A-G 6824710-A-G **
6692816-T-A 6824775-T-A **
6755851-C-T 6887810-C-T **
6795121-C-A 6927080-C-A **
6807105-G-A 6939064-G-A **
6903658-C-A 7035617-C-A **
6971694-T-C 7103653-T-C **
7038424-G-T 7170383-G-T **
7094540-G-T 7226499-G-T **
7140565-G-A 7272524-G-A **
7163121-C-A 7295080-C-A **
7378524-C-A 7510483-C-A **
7409527-G-A 7541486-G-A **
7415556-T-C 7547515-T-C **
7499257-A-G 7631216-A-G IR1_L **
7829030-G-C 7960989-G-C **
8644316-TGCTAAG-T 8776275-TGCTAAG-T **
8746340-C-A 8878299-C-A **
8761949-C-A 8893908-C-A **
8848445-C-A 8980404-C-A **
9109294-TA-T **
9025336-C-A 9187727-C-A **
9414665-T-C 9577056-T-C FT47675 **
9414673-A-C 9577064-A-C FT248700 **
9414679-T-C 9577070-T-C **
9508470-G-T 9670861-G-T **
9513969-C-A 9676360-C-A **
9940620-A-G 10103011-A-G **
9944725-G-T 10107116-G-T **
9944736-C-G 10107127-C-G **
9944744-C-G 10107135-C-G **
9951834-A-G 10114225-A-G **
9963328-G-T 10125719-G-T **
10045158-T-C 10207549-T-C **
10649025-C-T **
10653010-C-A **
10689776-A-T **
10693867-T-A **
10694117-T-C **
10748812-T-C **
10764797-C-T **
10765946-T-C **
10768445-C-A **
10768868-C-A **
10848061-C-CGACTG **
10848073-G-GTTAGA **
10848088-A-C **
10864642-T-A **
10916890-G-T **
10917665-C-A **
10925303-C-A FT92032 **
10958161-C-G **
10969879-C-G **
10991260-C-GGTTA **
10994137-T-TTCTACTCCAC **
10999303-T-G **
10999646-T-C **
13200978-G-T 11045302-G-T **
13237522-G-A 11081846-G-A **
13324748-G-C 11169072-G-C **
13324765-C-A 11169089-C-A **
13354903-C-T 11199227-C-T **
13405200-C-A 11249524-C-A **
13410603-A-C 11254927-A-C **
13445942-A-G 11290266-A-G **
13489372-G-C 11333696-G-C **
13489378-T-C 11333702-T-C **
13491723-C-A 11336047-C-A **
13512901-TG-T 11357225-TG-T **
13551259-A-T 11395583-A-T **
13565485-A-T 11409809-A-T **
13584790-C-A 11429114-C-A **
11649089-G-A DYZ17 **
11665228-C-A FT450875 DYZ17 **
11666428-G-T DYZ17 **
13846847-A-G 11726141-A-G DYZ17 **
13858457-A-G 11737751-A-G DYZ17 **
13871973-CTT-C 11751267-CTT-C **
13883003-A-G 11762297-A-G **
13891635-G-A 11770929-G-A **
13897282-G-A 11776576-G-A **
13920990-G-A 11800284-G-A **
13931010-A-T 11810304-A-T **
13942204-G-T 11821498-G-T **
13942314-TC-T 11821608-TC-T **
14011214-T-C 11890508-T-C **
14016575-GAGT-G 11895869-GAGT-G **
14016629-G-T 11895923-G-T **
14042647-GT-G 11921941-GT-G **
14050144-C-A 11929438-C-A **
14181775-A-T 12061069-A-T **
14240386-C-G 12119680-C-G **
14250627-A-G 12129921-A-G **
14255124-C-A 12134418-C-A **
14368605-G-T 12247901-G-T **
14449885-C-T 12329158-C-T **
14470725-T-C 12349994-T-C **
12378144-G-A **
14580959-G-A 12469159-G-A **
14672716-A-G 12560782-A-G **
14712387-G-T 12600454-G-T **
14792785-A-G 12680856-A-G **
14908329-C-A 12796396-C-A **
15034803-T-G 12922891-T-G **
15127052-C-A 13015139-C-A **
15336664-T-C 13224782-T-C **
15364623-T-C 13252743-T-C **
15368637-T-G 13256757-T-G **
15451452-C-A 13339572-C-A **
15475292-C-A 13363412-C-A **
15730657-C-G 13618777-C-G **
15739842-A-T 13627962-A-T **
15894456-C-A 13782576-C-A **
15906382-T-G 13794502-T-G **
15927864-C-A 13815984-C-A **
15974442-C-T 13862562-C-T **
16006867-A-C 13894987-A-C **
16048321-G-C 13936441-G-C **
16050263-T-C 13938383-T-C **
16050282-T-G 13938402-T-G **
16073034-A-G 13961154-A-G **
16241505-T-C 14129625-T-C **
16423008-C-A 14311128-C-A **
16423128-G-T 14311248-G-T **
16491317-C-A 14379437-C-A **
16623320-T-A 14511440-T-A **
16636294-G-A 14524414-G-A **
16684872-G-T 14572992-G-T **
16684950-G-T 14573070-G-T **
16743004-T-A 14631124-T-A **
16931496-A-G 14819616-A-G **
16944624-A-G 14832744-A-G **
17056688-C-A 14944808-C-A **
17219090-G-T 15107210-G-T **
17225922-C-A 15114042-C-A **
17277266-G-A 15165386-G-A **
17561373-C-T 15449493-C-T **
17619315-G-T 15507435-G-T **
17930204-C-A 15818324-C-A **
18186052-A-T 16074172-A-T **
18188923-G-T 16077043-G-T **
18188933-T-A 16077053-T-A **
18328864-A-G 16216984-A-G P6_Prx **
18624432-C-A 16512552-C-A **
18627990-A-G 16516110-A-G **
18736311-A-C 16624431-A-C **
18792004-T-A 16680124-T-A **
18928718-C-T 16816838-C-T **
19072788-G-T 16960908-G-T **
19259051-G-T 17147171-G-T **
19416523-C-A 17304643-C-A **
19416633-G-A 17304753-G-A **
19424877-G-C 17312997-G-C **
19464887-A-T 17353007-A-T **
19749168-A-G 17637288-A-G P5_Prx **
19749181-T-A 17637301-T-A P5_Prx **
19895132-AT-A 17783252-AT-A P5_Prx **
19931621-G-GAT 17819741-G-GAT P5_Prx **
20033099-A-AC 17921219-A-AC P5_Prx **
20330563-C-A 18168677-C-A P5_Dst **
20337559-C-T 18175673-C-T P5_Dst **
20661083-G-T 18499197-G-T P4_Prx **
20661112-T-TG 18499226-T-TG P4_Prx **
21182392-T-A 19020506-T-A **
21234848-C-T 19072962-C-T **
21324253-G-T 19162367-G-T **
21368707-C-G 19206821-C-G **
21450642-G-A 19288756-G-A **
21468075-C-A 19306189-C-A **
21503228-C-G 19341342-C-G **
21581622-C-A 19419736-C-A **
21634906-C-A 19473020-C-A **
21681373-C-A 19519487-C-A **
21793456-C-A 19631570-C-A **
21805436-T-C 19643550-T-C **
21920086-T-A 19758200-T-A **
21921988-A-C 19760102-A-C **
22022722-T-G 19860836-T-G **
22077247-G-A 19915361-G-A **
22125639-C-A 19963753-C-A **
22128690-G-A 19966804-G-A **
22169011-C-G 20007125-C-G **
22211525-G-A 20049639-G-A **
22218863-G-T 20056977-G-T DYZ19 **
22321525-C-A 20159639-C-A DYZ19 **
22714607-C-A 20552721-C-A **
22842157-G-A 20680271-G-A **
22868838-A-C 20706952-A-C **
22874494-C-A 20712608-C-A **
22951247-A-G 20789361-A-G **
22955957-T-A 20794071-T-A **
22988874-C-A 20826988-C-A **
23051223-C-G 20889337-C-G **
23119989-T-A 20958103-T-A **
23401239-TC-T 21239353-TC-T **
23401258-G-T 21239372-G-T **
23579424-T-C 21417538-T-C **
23789315-A-T 21627429-A-T **
23789575-T-C 21627689-T-C **
23876154-C-A 21714268-C-A **
21753858-C-A **
21753871-C-A **
21757610-C-A **
24402352-G-A 22256205-G-A **
24445485-T-C 22299338-T-C **
24491465-T-C 22345318-T-C **
24513286-T-C 22367139-T-C **
26514891-T-C 24368744-T-C P1_Y1 **
26514893-T-C 24368746-T-C P1_Y1 **
26514915-T-C 24368768-T-C P1_Y1 **
28429411-A-C 26283264-A-C P1_gr2 **
28481087-T-A 26334940-T-A **
28506272-G-T 26360125-G-T **
28567394-C-A 26421247-C-A **
28575131-A-G 26428984-A-G **
28582160-C-A 26436013-C-A **
28610338-C-A 26464191-C-A **
28612275-C-G 26466128-C-G **
28695082-CA-C 26548935-CA-C **
28695563-G-T 26549416-G-T **
28720193-G-A 26574046-G-A **
28802605-A-T 26656458-A-T **
56847947-C-A **
56850475-T-C **
56850710-C-T **
56860263-CA-C **
22510756-A-T 20348870-A-T DYZ19 ***
24967218-G-A 22821071-G-A ZS2186 g1 ***
9307384-G-C 9469775-G-C ***
20728643-CAG-C 18566757-CAG-C P4_Prx ***
22253511-G-A 20091625-G-A DYZ19 ***
22284989-C-T 20123103-C-T DYZ19 ***
22305700-C-G 20143814-C-G DYZ19 ***
22307575-T-C 20145689-T-C DYZ19 ***
24230750-C-T 22084603-C-T P3_b1 ***
24776686-G-C 22630539-G-C P3_b2 ***
25151278-T-C 23005131-T-C g1 ***
25195687-A-C 23049540-A-C g1 ***
25197747-G-C 23051600-G-C g1 ***
28808466-A-C 26662319-A-C ******
10946368-C-A ***
21555237-TC-T 19393351-TC-T ***
16275586-C-A 14163706-C-A ***
11001482-G-T ***
13485891-CCA-C 11330215-CCA-C ***
4581864-T-TA 4713823-T-TA 9×A***
4075881-G-T 4207840-G-T A12969 ***
10763128-T-A ***
13582560-C-A 11426884-C-A ***
22810063-C-A 20648177-C-A ***
10796642-C-T ***
5742770-C-A 5874729-C-A ***
2819960-CTTTTTT-C 2951919-CTTTTTT-C 17×T***
6983649-C-A 7115608-C-A ***
5281434-C-A 5413393-C-A ***
20865487-GTATA-G,GTATATA 18703601-GTATA-G,GTATATA P4_Dst 9×TA***
2810388-TTG-G,T 2942347-TTG-G,T ***
3991902-A-T 4123861-A-T ***
6922813-C-A 7054772-C-A ***
9403258-A-G 9565649-A-G ***
9414625-T-A 9577016-T-A ***
9414635-T-C 9577026-T-C ***
9414643-A-G 9577034-A-G ***
9414647-G-T 9577038-G-T ***
9414648-A-G 9577039-A-G ***
9907420-G-T 10069811-G-T ***
9962512-G-T 10124903-G-T ***
10655028-C-A ***
10763061-C-T ***
10825289-C-CGGGTTACTT ***
13194219-C-A 11038543-C-A ***
13803941-G-T 11683235-G-T DYZ17 ***
14025779-A-G 11905073-A-G ***
15111644-C-A 12999731-C-A ***
16428211-C-A 14316331-C-A ***
17374721-C-A 15262841-C-A ***
22295493-G-T 20133607-G-T DYZ19 ***
23293680-T-A 21131794-T-A ***
23734286-C-A 21572400-C-A ***
28514507-A-G 26368360-A-G ***
56844343-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.