McGing
FTDNA: B11338, BigY2: B11338, BigY3: B11338Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA B11338 | BigY2 B11338 | BigY3 B11338 | Manual Edits |
---|---|---|---|---|---|---|---|---|---|---|
hg19:Y:19902339-G-GT hg38:Y:17790459-G-GT | P5_Prx | 8×T | *** | A* | ||||||
hg19:Y:20746501-A-G hg38:Y:18584615-A-G | P4_Prx | *** | A* | A* | ||||||
hg19:Y:19609094-C-T hg38:Y:17497214-C-T | P5_Prx | Y | A* | |||||||
hg19:Y:19622328-C-T hg38:Y:17510448-C-T | P5_Prx | A* | ||||||||
hg19:Y:14344465-T-C hg38:Y:12223760-T-C | FT80808 | Y | + | |||||||
hg19:Y:14352134-G-A hg38:Y:12231429-G-A | FGC81131 | Y | Y | + | ||||||
hg19:Y:13294896-T-C hg38:Y:11139220-T-C | A13015 | + | ** | ** | ||||||
hg19:Y:14713717-C-T hg38:Y:12601784-C-T | FGC52727 | Y | Y | + | + | + | ||||
hg19:Y:17293769-G-C hg38:Y:15181889-G-C | FGC52729 | Y | Y | + | + | + | ||||
hg19:Y:18116532-G-A hg38:Y:16004652-G-A | FGC52730 | Y | Y | + | + | + | ||||
hg19:Y:19228700-G-A hg38:Y:17116820-G-A | FGC52731 | Y | Y | + | + | + | ||||
hg19:Y:21758803-C-T hg38:Y:19596917-C-T | FGC52733 | Y | Y | + | + | + | ||||
hg19:Y:22552981-C-T hg38:Y:20391095-C-T | FGC52734 | Y | Y | + | + | + | ||||
hg19:Y:23558771-G-A hg38:Y:21396885-G-A | FGC52735 | Y | Y | + | + | + | ||||
hg19:Y:23831511-C-T hg38:Y:21669625-C-T | A13016 | Y | + | *** | + | |||||
hg19:Y:2683200-C-T hg38:Y:2815159-C-T | FT80296 | Y | + | |||||||
hg19:Y:3967023-C-T hg38:Y:4098982-C-T | FT80408 | + | ||||||||
hg19:Y:4192753-G-C hg38:Y:4324712-G-C | FT80437 | + | ||||||||
hg19:Y:5608009-A-T hg38:Y:5739968-A-T | FT80613 | + | ||||||||
hg19:Y:22315705-T-G hg38:Y:20153819-T-G | DYZ19 | *** | * | |||||||
hg19:Y:22227318-T-A hg38:Y:20065432-T-A | DYZ19 | *** | * | |||||||
hg19:Y:26730181-T-G hg38:Y:24584034-T-G | P1_g2 | ** | ||||||||
hg19:Y:14463278-G-T hg38:Y:12342551-G-T | ** | |||||||||
hg19:Y:14463284-G-T hg38:Y:12342557-G-T | ** | |||||||||
hg19:Y:17373463-C-A hg38:Y:15261583-C-A | ** | |||||||||
hg19:Y:59004550-G-A hg38:Y:56858403-G-A | ** | |||||||||
hg19:Y:26730200-GA-G hg38:Y:24584053-GA-G | P1_g2 | ** | ||||||||
hg19:Y:21078211-AAAAT-A hg38:Y:18916325-AAAAT-A | 10×AAAT | ** | ||||||||
hg19:Y:3726531-C-A hg38:Y:3858490-C-A | ** | |||||||||
hg19:Y:4353957-C-A hg38:Y:4485916-C-A | ** | |||||||||
hg19:Y:17323494-A-G hg38:Y:15211614-A-G | ** | |||||||||
hg19:Y:22551366-C-A hg38:Y:20389480-C-A | ** | |||||||||
hg38:Y:10958481-C-A | ** | |||||||||
hg19:Y:15906388-T-A hg38:Y:13794508-T-A | ** | |||||||||
hg19:Y:14326577-A-C hg38:Y:12205871-A-C | ** | |||||||||
hg38:Y:10790238-C-A | ** | |||||||||
hg38:Y:10961191-C-A | ** | |||||||||
hg19:Y:15491939-GTGTATATATA-G hg38:Y:13380059-GTGTATATATA-G | ** | |||||||||
hg19:Y:13487826-C-T hg38:Y:11332150-C-T | ** | |||||||||
hg19:Y:20620905-CAA-C hg38:Y:18459019-CAA-C | P4_Prx | 14×A | ** | |||||||
hg19:Y:15363888-G-A hg38:Y:13252008-G-A | ** | |||||||||
hg19:Y:15363904-C-CAA hg38:Y:13252024-C-CAA | ** | |||||||||
hg19:Y:8119255-C-A hg38:Y:8251214-C-A | ** | |||||||||
hg38:Y:11647896-T-G | DYZ17 | ** | ||||||||
hg19:Y:19337659-A-T hg38:Y:17225779-A-T | ** | |||||||||
hg19:Y:15557950-C-T hg38:Y:13446070-C-T | ** | |||||||||
hg19:Y:7143465-C-A hg38:Y:7275424-C-A | ** | |||||||||
hg19:Y:6252217-C-A hg38:Y:6384176-C-A | IR3_Dst | ** | ||||||||
hg19:Y:3835112-C-A hg38:Y:3967071-C-A | ** | |||||||||
hg19:Y:4537872-C-A hg38:Y:4669831-C-A | ** | |||||||||
hg19:Y:4537882-A-T hg38:Y:4669841-A-T | ** | |||||||||
hg19:Y:19297482-G-T hg38:Y:17185602-G-T | ** | |||||||||
hg38:Y:56851555-C-A | ** | |||||||||
hg19:Y:10037911-C-A hg38:Y:10200302-C-A | ** | |||||||||
hg19:Y:21534776-C-A hg38:Y:19372890-C-A | ** | |||||||||
hg19:Y:5170429-C-A hg38:Y:5302388-C-A | ** | |||||||||
hg19:Y:16562738-G-A hg38:Y:14450858-G-A | ** | |||||||||
hg38:Y:10755662-C-T | FT429802 | ** | ||||||||
hg19:Y:15342742-C-A hg38:Y:13230861-C-A | ** | |||||||||
hg19:Y:6525768-CAAA-C hg38:Y:6657727-CAAA-C | 24×A | ** | ||||||||
hg19:Y:15866002-A-C hg38:Y:13754122-A-C | ** | |||||||||
hg19:Y:14146685-C-A hg38:Y:12025979-C-A | ** | |||||||||
hg19:Y:24446840-T-A hg38:Y:22300693-T-A | 13×A | ** | ||||||||
hg19:Y:15391194-C-A hg38:Y:13279314-C-A | ** | |||||||||
hg19:Y:26730194-GAA-G hg38:Y:24584047-GAA-G | P1_g2 | ** | ||||||||
hg19:Y:21388683-A-T hg38:Y:19226797-A-T | ** | |||||||||
hg19:Y:22319071-G-T hg38:Y:20157185-G-T | BY217402 | DYZ19 | ** | |||||||
hg19:Y:15276506-C-A hg38:Y:13164595-C-A | ** | |||||||||
hg19:Y:8660355-C-A hg38:Y:8792314-C-A | ** | |||||||||
hg19:Y:24513629-C-A hg38:Y:22367482-C-A | ** | |||||||||
hg19:Y:14269913-C-A hg38:Y:12149207-C-A | ** | |||||||||
hg19:Y:4830402-A-T hg38:Y:4962361-A-T | ** | |||||||||
hg19:Y:7054269-C-A hg38:Y:7186228-C-A | ** | |||||||||
hg19:Y:13984264-C-A hg38:Y:11863558-C-A | ** | |||||||||
hg38:Y:10759131-C-A | ** | |||||||||
hg38:Y:10684273-C-G | ** | |||||||||
hg19:Y:26073834-T-C hg38:Y:23927687-T-C | P1_Y1 | ** | ||||||||
hg19:Y:3849424-C-A hg38:Y:3981383-C-A | ** | |||||||||
hg19:Y:16176588-C-A hg38:Y:14064708-C-A | ** | |||||||||
hg19:Y:19967079-T-C hg38:Y:17855199-T-C | P5_Prx | ** | ||||||||
hg19:Y:14519596-T-G hg38:Y:12407797-T-G | ** | |||||||||
hg19:Y:7167074-C-A hg38:Y:7299033-C-A | ** | |||||||||
hg19:Y:14142906-C-A hg38:Y:12022200-C-A | ** | |||||||||
hg38:Y:10933388-G-T | ** | |||||||||
hg19:Y:2759958-C-A hg38:Y:2891917-C-A | ** | |||||||||
hg19:Y:2785987-TC-T hg38:Y:2917946-TC-T | ** | |||||||||
hg19:Y:2790303-CTTTTT-C hg38:Y:2922262-CTTTTT-C | 15×T | ** | ||||||||
hg19:Y:2861452-T-C hg38:Y:2993411-T-C | ** | |||||||||
hg19:Y:3048374-C-T hg38:Y:3180333-C-T | ** | |||||||||
hg19:Y:3100663-T-G hg38:Y:3232622-T-G | ** | |||||||||
hg19:Y:3100712-C-G hg38:Y:3232671-C-G | ** | |||||||||
hg19:Y:3100878-G-A hg38:Y:3232837-G-A | ** | |||||||||
hg19:Y:3345769-G-A hg38:Y:3477728-G-A | ** | |||||||||
hg19:Y:3467358-C-A hg38:Y:3599317-C-A | ** | |||||||||
hg19:Y:3590787-C-A hg38:Y:3722746-C-A | ** | |||||||||
hg19:Y:3598852-C-A hg38:Y:3730811-C-A | ** | |||||||||
hg19:Y:3598924-C-A hg38:Y:3730883-C-A | ** | |||||||||
hg19:Y:3609695-T-C hg38:Y:3741654-T-C | ** | |||||||||
hg19:Y:3623409-C-A hg38:Y:3755368-C-A | ** | |||||||||
hg19:Y:3641532-A-G hg38:Y:3773491-A-G | ** | |||||||||
hg19:Y:3804354-C-A hg38:Y:3936313-C-A | ** | |||||||||
hg19:Y:3833473-C-A hg38:Y:3965432-C-A | ** | |||||||||
hg19:Y:3835139-T-C hg38:Y:3967098-T-C | ** | |||||||||
hg19:Y:3851391-A-G hg38:Y:3983350-A-G | ** | |||||||||
hg19:Y:3870433-C-A hg38:Y:4002392-C-A | ** | |||||||||
hg19:Y:3965786-C-A hg38:Y:4097745-C-A | ** | |||||||||
hg19:Y:4065880-C-A hg38:Y:4197839-C-A | ** | |||||||||
hg19:Y:4103782-T-C hg38:Y:4235741-T-C | ** | |||||||||
hg19:Y:4200959-A-T hg38:Y:4332918-A-T | ** | |||||||||
hg19:Y:4223779-G-A hg38:Y:4355738-G-A | ** | |||||||||
hg19:Y:4229927-C-A hg38:Y:4361886-C-A | ** | |||||||||
hg19:Y:4233342-G-T hg38:Y:4365301-G-T | ** | |||||||||
hg19:Y:4243728-G-A hg38:Y:4375687-G-A | ** | |||||||||
hg19:Y:4261739-C-A hg38:Y:4393698-C-A | ** | |||||||||
hg19:Y:4302272-C-A hg38:Y:4434231-C-A | ** | |||||||||
hg19:Y:4325428-A-G hg38:Y:4457387-A-G | ** | |||||||||
hg19:Y:4420412-C-A hg38:Y:4552371-C-A | ** | |||||||||
hg19:Y:4447343-A-G hg38:Y:4579302-A-G | ** | |||||||||
hg19:Y:4450419-T-G hg38:Y:4582378-T-G | ** | |||||||||
hg19:Y:4473723-G-T hg38:Y:4605682-G-T | ** | |||||||||
hg19:Y:4527388-C-A hg38:Y:4659347-C-A | ** | |||||||||
hg19:Y:4626119-C-A hg38:Y:4758078-C-A | ** | |||||||||
hg19:Y:4688155-C-A hg38:Y:4820114-C-A | ** | |||||||||
hg19:Y:4759264-G-T hg38:Y:4891223-G-T | ** | |||||||||
hg19:Y:4781026-T-A hg38:Y:4912985-T-A | ** | |||||||||
hg19:Y:4830412-C-CTT hg38:Y:4962371-C-CTT | 13×T | ** | ||||||||
hg19:Y:4853940-C-A hg38:Y:4985899-C-A | ** | |||||||||
hg19:Y:4908005-C-T hg38:Y:5039964-C-T | ** | |||||||||
hg19:Y:4908006-A-G hg38:Y:5039965-A-G | FTA4216 | ** | ||||||||
hg19:Y:4908013-C-T hg38:Y:5039972-C-T | ** | |||||||||
hg19:Y:4908020-AAAAT-A hg38:Y:5039979-AAAAT-A | ** | |||||||||
hg19:Y:4908027-A-AC hg38:Y:5039986-A-AC | ** | |||||||||
hg19:Y:4996118-G-A hg38:Y:5128077-G-A | ** | |||||||||
hg19:Y:5073261-C-A hg38:Y:5205220-C-A | ** | |||||||||
hg19:Y:5184166-C-T hg38:Y:5316125-C-T | ** | |||||||||
hg19:Y:5234949-C-A hg38:Y:5366908-C-A | ** | |||||||||
hg19:Y:5289150-G-T hg38:Y:5421109-G-T | ** | |||||||||
hg19:Y:5336146-T-C hg38:Y:5468105-T-C | ** | |||||||||
hg19:Y:5358885-T-C hg38:Y:5490844-T-C | ** | |||||||||
hg19:Y:5459162-C-A hg38:Y:5591121-C-A | ** | |||||||||
hg19:Y:5612654-T-G hg38:Y:5744613-T-G | ** | |||||||||
hg19:Y:5620513-C-A hg38:Y:5752472-C-A | ** | |||||||||
hg19:Y:5869052-C-A hg38:Y:6001011-C-A | ** | |||||||||
hg19:Y:5895322-C-A hg38:Y:6027281-C-A | ** | |||||||||
hg19:Y:5966411-A-T hg38:Y:6098370-A-T | ** | |||||||||
hg19:Y:6091014-C-A hg38:Y:6222973-C-A | FT221436 | ** | ||||||||
hg19:Y:6097120-G-T hg38:Y:6229079-G-T | ** | |||||||||
hg19:Y:6223526-T-C hg38:Y:6355485-T-C | IR3_Dst | ** | ||||||||
hg19:Y:6310854-C-CAG hg38:Y:6442813-C-CAG | IR3_Dst | ** | ||||||||
hg19:Y:6358024-T-A hg38:Y:6489983-T-A | ** | |||||||||
hg19:Y:6409740-G-T hg38:Y:6541699-G-T | ** | |||||||||
hg19:Y:6429598-C-A hg38:Y:6561557-C-A | ** | |||||||||
hg19:Y:6475537-A-T hg38:Y:6607496-A-T | ** | |||||||||
hg19:Y:6487988-G-T hg38:Y:6619947-G-T | ** | |||||||||
hg19:Y:6509892-C-A hg38:Y:6641851-C-A | ** | |||||||||
hg19:Y:6585226-A-T hg38:Y:6717185-A-T | ** | |||||||||
hg19:Y:6642760-C-A hg38:Y:6774719-C-A | ** | |||||||||
hg19:Y:6748703-CT-C hg38:Y:6880662-CT-C | ** | |||||||||
hg19:Y:6756751-A-G hg38:Y:6888710-A-G | ** | |||||||||
hg19:Y:6830393-C-A hg38:Y:6962352-C-A | ** | |||||||||
hg19:Y:6833002-C-A hg38:Y:6964961-C-A | ** | |||||||||
hg19:Y:6911376-C-A hg38:Y:7043335-C-A | ** | |||||||||
hg19:Y:6955133-A-G hg38:Y:7087092-A-G | ** | |||||||||
hg19:Y:7008220-G-A hg38:Y:7140179-G-A | ** | |||||||||
hg19:Y:7082817-C-A hg38:Y:7214776-C-A | ** | |||||||||
hg19:Y:7085371-A-C hg38:Y:7217330-A-C | ** | |||||||||
hg19:Y:7097393-C-G hg38:Y:7229352-C-G | ** | |||||||||
hg19:Y:7141963-G-A hg38:Y:7273922-G-A | ** | |||||||||
hg19:Y:7202071-T-C hg38:Y:7334030-T-C | ** | |||||||||
hg19:Y:7239706-A-G hg38:Y:7371665-A-G | ** | |||||||||
hg19:Y:7281865-G-T hg38:Y:7413824-G-T | ** | |||||||||
hg19:Y:7288083-C-G hg38:Y:7420042-C-G | ** | |||||||||
hg19:Y:7309295-C-A hg38:Y:7441254-C-A | ** | |||||||||
hg19:Y:7309961-C-A hg38:Y:7441920-C-A | ** | |||||||||
hg19:Y:7311743-T-G hg38:Y:7443702-T-G | ** | |||||||||
hg19:Y:7311755-A-C hg38:Y:7443714-A-C | ** | |||||||||
hg19:Y:7360006-T-C hg38:Y:7491965-T-C | ** | |||||||||
hg19:Y:7362137-C-A hg38:Y:7494096-C-A | ** | |||||||||
hg19:Y:7507105-G-T hg38:Y:7639064-G-T | ** | |||||||||
hg19:Y:7590685-G-T hg38:Y:7722644-G-T | ** | |||||||||
hg19:Y:7708771-C-A hg38:Y:7840730-C-A | ** | |||||||||
hg19:Y:7774938-C-A hg38:Y:7906897-C-A | ** | |||||||||
hg19:Y:8353197-C-A hg38:Y:8485156-C-A | ** | |||||||||
hg19:Y:8678228-C-A hg38:Y:8810187-C-A | ** | |||||||||
hg19:Y:8746382-C-A hg38:Y:8878341-C-A | ** | |||||||||
hg19:Y:8913109-T-A hg38:Y:9045068-T-A | ** | |||||||||
hg38:Y:9110893-G-T | ** | |||||||||
hg19:Y:8971330-G-T hg38:Y:9133721-G-T | ** | |||||||||
hg19:Y:9408833-C-A hg38:Y:9571224-C-A | ** | |||||||||
hg19:Y:9461794-G-A hg38:Y:9624185-G-A | ** | |||||||||
hg19:Y:9761065-C-A hg38:Y:9923456-C-A | ** | |||||||||
hg19:Y:9830707-A-C hg38:Y:9993098-A-C | ** | |||||||||
hg19:Y:9920718-C-A hg38:Y:10083109-C-A | ** | |||||||||
hg19:Y:9926834-C-A hg38:Y:10089225-C-A | ** | |||||||||
hg19:Y:9934746-T-C hg38:Y:10097137-T-C | ** | |||||||||
hg19:Y:9952184-T-C hg38:Y:10114575-T-C | ** | |||||||||
hg19:Y:9996163-C-A hg38:Y:10158554-C-A | ** | |||||||||
hg19:Y:10018348-A-T hg38:Y:10180739-A-T | ** | |||||||||
hg38:Y:10654040-T-G | ** | |||||||||
hg38:Y:10654134-T-C | ** | |||||||||
hg38:Y:10755749-A-TT | ** | |||||||||
hg38:Y:10761112-C-A | ** | |||||||||
hg38:Y:10761781-C-CTTTCA | ** | |||||||||
hg38:Y:10762681-G-A | ** | |||||||||
hg38:Y:10772479-T-C | ** | |||||||||
hg38:Y:10776801-C-A | ** | |||||||||
hg38:Y:10792230-T-A | ** | |||||||||
hg38:Y:10793117-TTCCTC-T | ** | |||||||||
hg38:Y:10793147-T-C | ** | |||||||||
hg38:Y:10793154-C-T | ** | |||||||||
hg38:Y:10793167-T-C | ** | |||||||||
hg38:Y:10793177-T-A | ** | |||||||||
hg38:Y:10795761-C-A | ** | |||||||||
hg38:Y:10801129-C-A | ** | |||||||||
hg38:Y:10804757-C-A | ** | |||||||||
hg38:Y:10805766-G-T | ** | |||||||||
hg38:Y:10814278-C-A | ** | |||||||||
hg38:Y:10933696-A-C | ** | |||||||||
hg38:Y:10933711-A-C | ** | |||||||||
hg38:Y:10945791-G-T | ** | |||||||||
hg38:Y:10961218-T-C | ** | |||||||||
hg38:Y:10961251-CA-C | ** | |||||||||
hg38:Y:10964609-C-T | ** | |||||||||
hg38:Y:10970906-A-G | FT275543 | ** | ||||||||
hg38:Y:10984129-T-C | ** | |||||||||
hg38:Y:10984144-T-C | ** | |||||||||
hg38:Y:11002198-T-C | ** | |||||||||
hg38:Y:11008901-T-A | ** | |||||||||
hg38:Y:11009138-C-A | ** | |||||||||
hg38:Y:11021590-T-C | ** | |||||||||
hg38:Y:11031004-C-A | ** | |||||||||
hg38:Y:11037805-C-A | FT440425 | ** | ||||||||
hg19:Y:13235487-A-T hg38:Y:11079811-A-T | ** | |||||||||
hg19:Y:13315747-C-A hg38:Y:11160071-C-A | ** | |||||||||
hg19:Y:13487803-GCTGGC-A hg38:Y:11332127-GCTGGC-A | ** | |||||||||
hg19:Y:13594378-C-A hg38:Y:11438702-C-A | ** | |||||||||
hg19:Y:13640685-C-A hg38:Y:11485009-C-A | ** | |||||||||
hg38:Y:11643599-G-T | DYZ17 | ** | ||||||||
hg38:Y:11647900-C-G | DYZ17 | ** | ||||||||
hg38:Y:11651332-G-T | DYZ17 | ** | ||||||||
hg38:Y:11657613-G-T | DYZ17 | ** | ||||||||
hg38:Y:11659991-G-T | DYZ17 | ** | ||||||||
hg19:Y:13870700-T-G hg38:Y:11749994-T-G | ** | |||||||||
hg19:Y:13871503-C-A hg38:Y:11750797-C-A | ** | |||||||||
hg19:Y:13908567-C-A hg38:Y:11787861-C-A | ** | |||||||||
hg19:Y:13934907-T-C hg38:Y:11814201-T-C | ** | |||||||||
hg19:Y:13935998-C-A hg38:Y:11815292-C-A | ** | |||||||||
hg19:Y:14011310-G-T hg38:Y:11890604-G-T | ** | |||||||||
hg19:Y:14012302-C-A hg38:Y:11891596-C-A | ** | |||||||||
hg19:Y:14036101-C-A hg38:Y:11915395-C-A | ** | |||||||||
hg19:Y:14066983-G-T hg38:Y:11946277-G-T | ** | |||||||||
hg19:Y:14123912-G-A hg38:Y:12003206-G-A | ** | |||||||||
hg19:Y:14142366-A-T hg38:Y:12021660-A-T | ** | |||||||||
hg19:Y:14174901-G-A hg38:Y:12054195-G-A | ** | |||||||||
hg19:Y:14213377-T-G hg38:Y:12092671-T-G | 5×GAGG | ** | ||||||||
hg19:Y:14234594-C-A hg38:Y:12113888-C-A | ** | |||||||||
hg19:Y:14297308-C-A hg38:Y:12176602-C-A | ** | |||||||||
hg19:Y:14398339-G-A hg38:Y:12277635-G-A | ** | |||||||||
hg19:Y:14464301-G-T hg38:Y:12343574-G-T | ** | |||||||||
hg19:Y:14468072-C-A hg38:Y:12347341-C-A | ** | |||||||||
hg19:Y:14473655-C-G hg38:Y:12352924-C-G | ** | |||||||||
hg19:Y:14500195-C-A hg38:Y:12388400-C-A | ** | |||||||||
hg19:Y:14544031-T-A hg38:Y:12432232-T-A | ** | |||||||||
hg19:Y:14549894-C-T hg38:Y:12438095-C-T | ** | |||||||||
hg19:Y:14557440-C-A hg38:Y:12445641-C-A | ** | |||||||||
hg19:Y:14694909-C-A hg38:Y:12582975-C-A | ** | |||||||||
hg19:Y:14909094-C-A hg38:Y:12797161-C-A | ** | |||||||||
hg19:Y:15212551-C-A hg38:Y:13100637-C-A | ** | |||||||||
hg19:Y:15296811-C-A hg38:Y:13184910-C-A | ** | |||||||||
hg19:Y:15363885-C-T hg38:Y:13252005-C-T | ** | |||||||||
hg19:Y:15386404-G-A hg38:Y:13274524-G-A | ** | |||||||||
hg19:Y:15403572-C-A hg38:Y:13291692-C-A | ** | |||||||||
hg19:Y:15475209-G-A hg38:Y:13363329-G-A | ** | |||||||||
hg19:Y:15542118-A-G hg38:Y:13430238-A-G | ** | |||||||||
hg19:Y:15570825-T-A hg38:Y:13458945-T-A | ** | |||||||||
hg19:Y:15717936-A-T hg38:Y:13606056-A-T | ** | |||||||||
hg19:Y:15790423-C-A hg38:Y:13678543-C-A | ** | |||||||||
hg19:Y:15791086-A-C hg38:Y:13679206-A-C | ** | |||||||||
hg19:Y:15798235-G-A hg38:Y:13686355-G-A | ** | |||||||||
hg19:Y:16017610-T-A hg38:Y:13905730-T-A | ** | |||||||||
hg19:Y:16017735-C-A hg38:Y:13905855-C-A | PH1966 | ** | ||||||||
hg19:Y:16044327-A-G hg38:Y:13932447-A-G | ** | |||||||||
hg19:Y:16070755-C-G hg38:Y:13958875-C-G | ** | |||||||||
hg19:Y:16181420-T-C hg38:Y:14069540-T-C | ** | |||||||||
hg19:Y:16214287-G-T hg38:Y:14102407-G-T | ** | |||||||||
hg19:Y:16277840-A-C hg38:Y:14165960-A-C | ** | |||||||||
hg19:Y:16384557-G-A hg38:Y:14272677-G-A | ** | |||||||||
hg19:Y:16607954-A-C hg38:Y:14496074-A-C | ** | |||||||||
hg19:Y:16679404-A-C hg38:Y:14567524-A-C | 18×T | ** | ||||||||
hg19:Y:16702011-G-T hg38:Y:14590131-G-T | ** | |||||||||
hg19:Y:16829308-C-A hg38:Y:14717428-C-A | ** | |||||||||
hg19:Y:16942095-C-A hg38:Y:14830215-C-A | ** | |||||||||
hg19:Y:16952696-C-A hg38:Y:14840816-C-A | ** | |||||||||
hg19:Y:16993680-A-G hg38:Y:14881800-A-G | ** | |||||||||
hg19:Y:16993836-C-A hg38:Y:14881956-C-A | ** | |||||||||
hg19:Y:17085478-A-G hg38:Y:14973598-A-G | ** | |||||||||
hg19:Y:17143948-G-C hg38:Y:15032068-G-C | ** | |||||||||
hg19:Y:17297244-C-A hg38:Y:15185364-C-A | ** | |||||||||
hg19:Y:17372113-G-A hg38:Y:15260233-G-A | ** | |||||||||
hg19:Y:17503645-G-A hg38:Y:15391765-G-A | FTB73798 | ** | ||||||||
hg19:Y:17503934-G-A hg38:Y:15392054-G-A | ** | |||||||||
hg19:Y:17505016-C-A hg38:Y:15393136-C-A | ** | |||||||||
hg19:Y:17513800-C-A hg38:Y:15401920-C-A | ** | |||||||||
hg19:Y:17547909-C-A hg38:Y:15436029-C-A | ** | |||||||||
hg19:Y:17581815-C-A hg38:Y:15469935-C-A | ** | |||||||||
hg19:Y:17730450-C-T hg38:Y:15618570-C-T | ** | |||||||||
hg19:Y:17779334-A-G hg38:Y:15667454-A-G | ** | |||||||||
hg19:Y:17859895-A-G hg38:Y:15748015-A-G | FT249552 | ** | ||||||||
hg19:Y:17859956-G-A hg38:Y:15748076-G-A | ** | |||||||||
hg19:Y:17916602-T-C hg38:Y:15804722-T-C | ** | |||||||||
hg19:Y:17929199-A-G hg38:Y:15817319-A-G | ** | |||||||||
hg19:Y:18003147-C-T hg38:Y:15891267-C-T | P7_Gap | ** | ||||||||
hg19:Y:18101072-A-G hg38:Y:15989192-A-G | ** | |||||||||
hg19:Y:18121750-T-C hg38:Y:16009870-T-C | ** | |||||||||
hg19:Y:18354244-A-AG hg38:Y:16242364-A-AG | P6_Prx | ** | ||||||||
hg19:Y:18579116-C-A hg38:Y:16467236-C-A | ** | |||||||||
hg19:Y:18717737-AAAAAAAG-A hg38:Y:16605857-AAAAAAAG-A | ** | |||||||||
hg19:Y:18730690-C-A hg38:Y:16618810-C-A | ** | |||||||||
hg19:Y:18768329-T-C hg38:Y:16656449-T-C | ** | |||||||||
hg19:Y:18858611-GAAAAAA-G hg38:Y:16746731-GAAAAAA-G | 14×A | ** | ||||||||
hg19:Y:18997213-A-G hg38:Y:16885333-A-G | ** | |||||||||
hg19:Y:19000877-T-C hg38:Y:16888997-T-C | ** | |||||||||
hg19:Y:19129302-C-A hg38:Y:17017422-C-A | ** | |||||||||
hg19:Y:19155980-C-A hg38:Y:17044100-C-A | ** | |||||||||
hg19:Y:19248228-C-T hg38:Y:17136348-C-T | ** | |||||||||
hg19:Y:19425103-T-C hg38:Y:17313223-T-C | ** | |||||||||
hg19:Y:19591409-T-TC hg38:Y:17479529-T-TC | P5_Prx | ** | ||||||||
hg19:Y:19829327-G-T hg38:Y:17717447-G-T | P5_Prx | ** | ||||||||
hg19:Y:20501106-A-G hg38:Y:18339220-A-G | P5_Dst | ** | ||||||||
hg19:Y:20526328-A-T hg38:Y:18364442-A-T | P5_Dst | 6×ATTT | ** | |||||||
hg19:Y:20526331-TTA-T hg38:Y:18364445-TTA-T | P5_Dst | ** | ||||||||
hg19:Y:20809843-C-T hg38:Y:18647957-C-T | Y56100 | P4_Gap | ** | |||||||
hg19:Y:21111788-C-A hg38:Y:18949902-C-A | ** | |||||||||
hg19:Y:21136704-C-A hg38:Y:18974818-C-A | ** | |||||||||
hg19:Y:21139474-C-A hg38:Y:18977588-C-A | ** | |||||||||
hg19:Y:21243965-T-A hg38:Y:19082079-T-A | ** | |||||||||
hg19:Y:21268005-G-T hg38:Y:19106119-G-T | ** | |||||||||
hg19:Y:21367637-C-A hg38:Y:19205751-C-A | ** | |||||||||
hg19:Y:21394105-C-A hg38:Y:19232219-C-A | ** | |||||||||
hg19:Y:21457805-G-T hg38:Y:19295919-G-T | ** | |||||||||
hg19:Y:21459785-G-T hg38:Y:19297899-G-T | ** | |||||||||
hg19:Y:21459927-C-A hg38:Y:19298041-C-A | ** | |||||||||
hg19:Y:21503319-T-C hg38:Y:19341433-T-C | ** | |||||||||
hg19:Y:21503334-C-A hg38:Y:19341448-C-A | ** | |||||||||
hg19:Y:21589479-C-A hg38:Y:19427593-C-A | ** | |||||||||
hg19:Y:21677526-C-A hg38:Y:19515640-C-A | ** | |||||||||
hg19:Y:21742607-T-A hg38:Y:19580721-T-A | ** | |||||||||
hg19:Y:21836311-C-A hg38:Y:19674425-C-A | ** | |||||||||
hg19:Y:22001811-C-T hg38:Y:19839925-C-T | ** | |||||||||
hg19:Y:22012090-G-A hg38:Y:19850204-G-A | ** | |||||||||
hg19:Y:22135477-C-A hg38:Y:19973591-C-A | ** | |||||||||
hg19:Y:22172531-TA-T hg38:Y:20010645-TA-T | ** | |||||||||
hg19:Y:22214745-C-A hg38:Y:20052859-C-A | ** | |||||||||
hg19:Y:22613941-C-A hg38:Y:20452055-C-A | ** | |||||||||
hg19:Y:22765701-CT-C hg38:Y:20603815-CT-C | ** | |||||||||
hg19:Y:22809762-C-A hg38:Y:20647876-C-A | ** | |||||||||
hg19:Y:22854870-G-T hg38:Y:20692984-G-T | ** | |||||||||
hg19:Y:22949859-A-T hg38:Y:20787973-A-T | ** | |||||||||
hg19:Y:22951190-T-C hg38:Y:20789304-T-C | ** | |||||||||
hg19:Y:22965235-C-A hg38:Y:20803349-C-A | ** | |||||||||
hg19:Y:23062403-C-A hg38:Y:20900517-C-A | ** | |||||||||
hg19:Y:23120078-C-A hg38:Y:20958192-C-A | ** | |||||||||
hg19:Y:23128620-A-G hg38:Y:20966734-A-G | ** | |||||||||
hg19:Y:23345691-A-G hg38:Y:21183805-A-G | ** | |||||||||
hg19:Y:23448116-A-G hg38:Y:21286230-A-G | ** | |||||||||
hg19:Y:23742343-C-A hg38:Y:21580457-C-A | ** | |||||||||
hg19:Y:23801990-G-T hg38:Y:21640104-G-T | ** | |||||||||
hg19:Y:23875623-G-C hg38:Y:21713737-G-C | ** | |||||||||
hg19:Y:24241201-C-A hg38:Y:22095054-C-A | P3_b1 | ** | ||||||||
hg19:Y:26228732-TG-T hg38:Y:24082585-TG-T | P1_Y1 | ** | ||||||||
hg19:Y:26478100-C-A hg38:Y:24331953-C-A | P1_Y1 | ** | ||||||||
hg19:Y:26834430-G-A hg38:Y:24688283-G-A | P1_g2 | ** | ||||||||
hg19:Y:28111785-C-G hg38:Y:25965638-C-G | P1_Y2 | ** | ||||||||
hg19:Y:28570347-C-T hg38:Y:26424200-C-T | ** | |||||||||
hg19:Y:28607786-C-A hg38:Y:26461639-C-A | ** | |||||||||
hg19:Y:28653195-G-A hg38:Y:26507048-G-A | ** | |||||||||
hg19:Y:28661632-C-A hg38:Y:26515485-C-A | ** | |||||||||
hg19:Y:28690468-G-A hg38:Y:26544321-G-A | FT31887 | ** | ||||||||
hg19:Y:28712127-C-A hg38:Y:26565980-C-A | ** | |||||||||
hg19:Y:28755972-T-C hg38:Y:26609825-T-C | ** | |||||||||
hg19:Y:28775194-C-A hg38:Y:26629047-C-A | ** | |||||||||
hg19:Y:28779656-T-C hg38:Y:26633509-T-C | ** | |||||||||
hg38:Y:56677981-A-G | ** | |||||||||
hg38:Y:56841657-G-T | ** | |||||||||
hg38:Y:56844738-G-T | ** | |||||||||
hg19:Y:6112883-T-G hg38:Y:6244842-T-G | ** | |||||||||
hg19:Y:25971171-T-C hg38:Y:23825024-T-C | P1_Y1 | ** | ||||||||
hg19:Y:4908953-G-C hg38:Y:5040912-G-C | ** | |||||||||
hg19:Y:13598360-G-A hg38:Y:11442684-G-A | ** | |||||||||
hg19:Y:13926274-T-A hg38:Y:11805568-T-A | ** | |||||||||
hg19:Y:16427785-C-A hg38:Y:14315905-C-A | ** | |||||||||
hg19:Y:20734142-C-A hg38:Y:18572256-C-A | P4_Prx | ** | ||||||||
hg19:Y:9136669-T-TTATA hg38:Y:9299060-T-TTATA | 11×TA | *** | ||||||||
hg19:Y:22247801-A-G hg38:Y:20085915-A-G | DYZ19 | *** | ||||||||
hg19:Y:22422703-C-A hg38:Y:20260817-C-A | DYZ19 | *** | *** | |||||||
hg19:Y:25079562-T-C hg38:Y:22933415-T-C | g1 | *** | ||||||||
hg19:Y:25108311-C-T hg38:Y:22962164-C-T | g1 | *** | ||||||||
hg19:Y:25143266-T-C hg38:Y:22997119-T-C | g1 | *** | ||||||||
hg19:Y:25345161-A-G hg38:Y:23199014-A-G | P2_r1 | *** | ||||||||
hg19:Y:13487788-C-A hg38:Y:11332112-C-A | *** | |||||||||
hg38:Y:10861190-C-A | *** | |||||||||
hg19:Y:15969953-C-A hg38:Y:13858073-C-A | *** | |||||||||
hg19:Y:23801733-CAAAAAAA-C hg38:Y:21639847-CAAAAAAA-C | 31×A | *** | ||||||||
hg38:Y:10894488-T-G | *** | |||||||||
hg19:Y:3012877-C-A hg38:Y:3144836-C-A | *** | |||||||||
hg19:Y:2798691-A-T hg38:Y:2930650-A-T | *** | |||||||||
hg19:Y:7000541-C-A hg38:Y:7132500-C-A | *** | |||||||||
hg19:Y:7108340-C-A hg38:Y:7240299-C-A | *** | |||||||||
hg19:Y:7400291-G-A hg38:Y:7532250-G-A | *** | |||||||||
hg19:Y:9980362-C-A hg38:Y:10142753-C-A | *** | |||||||||
hg38:Y:10677326-C-A | *** | |||||||||
hg38:Y:10677493-TTCCAC-T,TTCCAT | *** | |||||||||
hg38:Y:10764547-TTTCACTC-T,TC | *** | |||||||||
hg38:Y:10971227-CTCCATTCCATTCCATTCCAT-C | *** | |||||||||
hg38:Y:10982194-C-T | *** | |||||||||
hg19:Y:13473933-C-T hg38:Y:11318257-C-T | *** | |||||||||
hg19:Y:13487794-C-CTGTAT hg38:Y:11332118-C-CTGTAT | *** | |||||||||
hg19:Y:14835197-GGGTTT-G hg38:Y:12723264-GGGTTT-G | *** | |||||||||
hg19:Y:15685085-C-T hg38:Y:13573205-C-T | *** | |||||||||
hg19:Y:16354635-G-T hg38:Y:14242755-G-T | *** | |||||||||
hg19:Y:18253431-G-T hg38:Y:16141551-G-T | *** | |||||||||
hg19:Y:18426482-GAAA-G hg38:Y:16314602-GAAA-G | P6_Gap | 15×A | *** | |||||||
hg19:Y:18753187-C-A hg38:Y:16641307-C-A | *** | |||||||||
hg19:Y:21491108-A-G hg38:Y:19329222-A-G | *** | |||||||||
hg19:Y:22934211-T-G hg38:Y:20772325-T-G | *** | |||||||||
hg19:Y:23040157-TAAA-T,TAA hg38:Y:20878271-TAAA-T,TAA | 17×A | *** | ||||||||
hg19:Y:28756772-C-A hg38:Y:26610625-C-A | *** | |||||||||
hg38:Y:56841730-G-T | *** | |||||||||
hg19:Y:4123328-GAAATAAAT-G hg38:Y:4255287-GAAATAAAT-G | 11×AAAT | *** | ||||||||
hg19:Y:6915796-ATTT-A,ATT hg38:Y:7047755-ATTT-A,ATT | 22×T | *** | ||||||||
hg19:Y:13963824-ATTTTTTTTTTTTTTTTTTTTTTTTT-A,ATTTTT hg38:Y:11843118-ATTTTTTTTTTTTTTTTTTTTTTTTT-A,ATTTTT | 49×T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Mutation Notes:
Kit | POSITION-REF-ALT (hg19) | POSITION-REF-ALT (hg38) | Note |
---|---|---|---|
Manual | 17275758-A-AAAGGGAAGGG | 15163878-A-AAAGGGAAGGG | 6 reads show this insertion. Another couple reads are misaligned. |
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: B11338 | 10835310 | 7865083 | 7944431 |
Kit: B11338 | 9853144 | 8024174 | 7906125 |
Kit: B11338 | 14679991 | 9236205 | 8239540 |
Used in age calculations | 14679991 | 9236205 | 8239540 |
Counts of SNPs | 11 | 9 |
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