Egan
FTDNA: 49625, BigY2: 49625Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 49625 | BigY2 49625 |
---|---|---|---|---|---|---|---|---|---|
19826913-A-G | 17715033-A-G | P5_Prx | *** | A* | |||||
28817483-A-T | 26671336-A-T | A* | |||||||
16748689-T-C | 14636809-T-C | Y70423 | Y | Y | + | + | |||
23486213-C-T | 21324327-C-T | Y79956 | Y | Y | + | + | |||
17623033-G-A | 15511153-G-A | Y72024 | Y | Y | + | + | |||
11032914-T-A | ** | ||||||||
13200542-G-A | 11044866-G-A | ** | |||||||
13264077-T-A | 11108401-T-A | ** | |||||||
13268911-C-A | 11113235-C-A | ** | |||||||
13277933-A-G | 11122257-A-G | ** | |||||||
13317195-C-A | 11161519-C-A | ** | |||||||
11015877-C-T | ** | ||||||||
13368009-G-T | 11212333-G-T | FT443301 | ** | ||||||
13522066-C-T | 11366390-C-T | ** | |||||||
13522859-G-T | 11367183-G-T | ** | |||||||
13565485-A-G | 11409809-A-G | ** | |||||||
13578644-G-T | 11422968-G-T | ** | |||||||
13597523-G-A | 11441847-G-A | ** | |||||||
13610985-C-A | 11455309-C-A | ** | |||||||
11651318-A-T | ** | ||||||||
11019425-A-T | ** | ||||||||
10991085-C-A | ** | ||||||||
10998498-A-T | ** | ||||||||
10926885-C-A | ** | ||||||||
10898665-C-T | ** | ||||||||
10905710-G-T | ** | ||||||||
10912889-G-T | ** | ||||||||
10912907-T-C | ** | ||||||||
10912908-C-T | ** | ||||||||
10921288-T-A | ** | ||||||||
10955384-TC-T | ** | ||||||||
10995196-G-T | ** | ||||||||
10959594-C-A | ** | ||||||||
10968519-C-A | ** | ||||||||
10970811-A-C | ** | ||||||||
10971007-C-A | ** | ||||||||
10976180-G-T | ** | ||||||||
11672073-G-A | ** | ||||||||
11655775-G-C | ** | ||||||||
23025229-C-A | 20863343-C-A | 29×A | ** | ||||||
13855316-G-A | 11734610-G-A | ** | |||||||
14458338-A-G | 12337611-A-G | ** | |||||||
14379304-C-A | 12258600-C-A | ** | |||||||
14449987-G-T | 12329260-G-T | ** | |||||||
14452771-A-G | 12332044-A-G | FT189 | ** | ||||||
14458332-C-T | 12337605-C-T | ** | |||||||
14458335-G-A | 12337608-G-A | ** | |||||||
14458337-C-T | 12337610-C-T | ** | |||||||
14488711-T-A | 12367980-T-A | ** | |||||||
14241947-A-C | 12121241-A-C | ** | |||||||
12378684-C-A | ** | ||||||||
14499463-A-T | 12387668-A-T | ** | |||||||
14531556-C-A | 12419757-C-A | ** | |||||||
14560723-C-T | 12448924-C-T | ** | |||||||
14589871-C-A | 12478071-C-A | ** | |||||||
14622821-T-C | 12511019-T-C | ** | |||||||
14286076-C-T | 12165370-C-T | ** | |||||||
14229630-G-A | 12108924-G-A | ** | |||||||
13857364-A-C | 11736658-A-C | ** | |||||||
13927284-G-A | 11806578-G-A | ** | |||||||
10898593-C-A | ** | ||||||||
13865795-G-C | 11745089-G-C | ** | |||||||
13865804-G-C | 11745098-G-C | ** | |||||||
13865806-A-G | 11745100-A-G | ** | |||||||
13884871-A-G | 11764165-A-G | ** | |||||||
13894184-GA-G | 11773478-GA-G | ** | |||||||
13930443-C-A | 11809737-C-A | ** | |||||||
14213063-G-T | 12092357-G-T | ** | |||||||
13932916-A-C | 11812210-A-C | ** | |||||||
13934986-AT-A | 11814280-AT-A | ** | |||||||
14079917-C-A | 11959211-C-A | ** | |||||||
14086140-C-A | 11965434-C-A | ** | |||||||
14118227-T-G | 11997521-T-G | ** | |||||||
14196346-C-CA | 12075640-C-CA | ** | |||||||
13865789-G-GGGTTA | 11745083-G-GGGTTA | ** | |||||||
10868104-C-G | ** | ||||||||
10888893-C-A | ** | ||||||||
8481117-ATAATG-A | 8613076-ATAATG-A | ** | |||||||
9501822-A-G | 9664213-A-G | ** | |||||||
9442433-C-A | 9604824-C-A | ** | |||||||
9427691-G-T | 9590082-G-T | ** | |||||||
9371411-T-A | 9533802-T-A | ** | |||||||
9116876-G-A | 9279267-G-A | ** | |||||||
9075312-C-A | 9237703-C-A | ** | |||||||
8988156-G-T | 9150547-G-T | ** | |||||||
8970814-T-C | 9133205-T-C | ** | |||||||
8849994-C-T | 8981953-C-T | ** | |||||||
8792855-T-C | 8924814-T-C | ** | |||||||
8720681-C-A | 8852640-C-A | ** | |||||||
8673965-C-T | 8805924-C-T | ** | |||||||
8481147-A-T | 8613106-A-T | ** | |||||||
8481139-T-C | 8613098-T-C | ** | |||||||
8080277-A-T | 8212236-A-T | ** | |||||||
9873721-G-A | 10036112-G-A | ** | |||||||
7063838-C-A | 7195797-C-A | ** | |||||||
6580395-A-G | 6712354-A-G | ** | |||||||
6770902-G-T | 6902861-G-T | ** | |||||||
6903644-C-A | 7035603-C-A | ** | |||||||
6944933-G-C | 7076892-G-C | ** | |||||||
15445452-C-A | 13333572-C-A | ** | |||||||
7048492-G-T | 7180451-G-T | ** | |||||||
7285643-G-A | 7417602-G-A | ** | |||||||
7621297-A-T | 7753256-A-T | ** | |||||||
7390456-C-A | 7522415-C-A | ** | |||||||
7418323-C-A | 7550282-C-A | ** | |||||||
7424994-C-A | 7556953-C-A | ** | |||||||
7437139-T-G | 7569098-T-G | ** | |||||||
7437148-A-G | 7569107-A-G | ** | |||||||
7437172-T-G | 7569131-T-G | ** | |||||||
9769011-C-A | 9931402-C-A | ** | |||||||
9877930-C-A | 10040321-C-A | ** | |||||||
14965337-G-A | 12853412-G-A | ** | |||||||
10847867-C-A | ** | ||||||||
10824888-C-A | ** | ||||||||
10824897-C-A | ** | ||||||||
10827170-A-T | ** | ||||||||
10834718-T-A | ** | ||||||||
10839875-T-C | ** | ||||||||
10844825-T-C | ** | ||||||||
10852673-C-A | ** | ||||||||
10806893-T-A | ** | ||||||||
10865879-A-G | ** | ||||||||
10865907-C-G | ** | ||||||||
10865926-C-G | ** | ||||||||
10865928-T-G | ** | ||||||||
10865941-C-G | ** | ||||||||
10868050-C-G | ** | ||||||||
10815013-C-A | ** | ||||||||
10770512-C-T | ** | ||||||||
9899471-C-T | 10061862-C-T | ** | |||||||
10659651-C-A | ** | ||||||||
9899473-A-C | 10061864-A-C | ** | |||||||
9899600-A-T | 10061991-A-T | ** | |||||||
9935364-C-A | 10097755-C-A | ** | |||||||
10032607-G-T | 10194998-G-T | ** | |||||||
10045452-G-A | 10207843-G-A | ** | |||||||
10069515-CAA-C | 10231906-CAA-C | 11×A | ** | ||||||
10664867-T-C | ** | ||||||||
10754627-T-C | ** | ||||||||
10673261-C-A | ** | ||||||||
10678751-TCA-T | ** | ||||||||
10692117-T-C | ** | ||||||||
10692114-TCATTC-T | ** | ||||||||
10752500-A-G | ** | ||||||||
10754435-C-G | ** | ||||||||
14667854-T-C | 12555920-T-C | ** | |||||||
15185504-C-A | 13073590-C-A | ** | |||||||
15092601-CAA-C | 12980690-CAA-C | ** | |||||||
21456088-TG-T | 19294202-TG-T | ** | |||||||
22189044-C-A | 20027158-C-A | ** | |||||||
22171634-G-T | 20009748-G-T | ** | |||||||
22128785-C-T | 19966899-C-T | ** | |||||||
22128639-C-A | 19966753-C-A | ** | |||||||
22092916-T-G | 19931030-T-G | ** | |||||||
22091446-A-C | 19929560-A-C | ** | |||||||
22085894-C-T | 19924008-C-T | ** | |||||||
22068801-C-T | 19906915-C-T | ** | |||||||
22011618-T-C | 19849732-T-C | ** | |||||||
21912253-C-T | 19750367-C-T | ** | |||||||
21790586-T-A | 19628700-T-A | ** | |||||||
21790571-C-T | 19628685-C-T | ** | |||||||
21708816-C-A | 19546930-C-A | ** | |||||||
21589558-A-C | 19427672-A-C | ** | |||||||
21320261-C-A | 19158375-C-A | ** | |||||||
22587984-T-A | 20426098-T-A | ** | |||||||
20376706-A-G | 18214820-A-G | P5_Dst | ** | ||||||
19423774-C-A | 17311894-C-A | A15018 | ** | ||||||
19479871-C-T | 17367991-C-T | 15×T | ** | ||||||
19551795-C-A | 17439915-C-A | ** | |||||||
19737309-G-GTTTTT | 17625429-G-GTTTTT | P5_Prx | 11×T | ** | |||||
19749382-T-C | 17637502-T-C | P5_Prx | ** | ||||||
19749438-C-A | 17637558-C-A | P5_Prx | ** | ||||||
20433712-C-A | 18271826-C-A | P5_Dst | ** | ||||||
21262514-T-C | 19100628-T-C | ** | |||||||
20612626-G-T | 18450740-G-T | P4_Prx | ** | ||||||
20711564-T-A | 18549678-T-A | P4_Prx | ** | ||||||
20727600-A-C | 18565714-A-C | P4_Prx | ** | ||||||
20727693-T-TG | 18565807-T-TG | P4_Prx | ** | ||||||
21068382-C-A | 18906496-C-A | ** | |||||||
21153530-A-T | 18991644-A-T | ** | |||||||
22542475-A-G | 20380589-A-G | ** | |||||||
22775316-C-A | 20613430-C-A | ** | |||||||
19299162-T-C | 17187282-T-C | ** | |||||||
28534379-T-C | 26388232-T-C | ** | |||||||
26440472-C-T | 24294325-C-T | P1_Y1 | ** | ||||||
27527042-C-A | 25380895-C-A | P1_Y2 | ** | ||||||
27677556-T-TG | 25531409-T-TG | P1_Y2 | ** | ||||||
28437750-C-G | 26291603-C-G | P1_gr2 | ** | ||||||
28498176-C-A | 26352029-C-A | ** | |||||||
28500274-T-C | 26354127-T-C | ** | |||||||
28698991-C-A | 26552844-C-A | ** | |||||||
26089978-C-T | 23943831-C-T | P1_Y1 | ** | ||||||
28699057-C-A | 26552910-C-A | ** | |||||||
28712161-A-G | 26566014-A-G | ** | |||||||
28764024-C-T | 26617877-C-T | ** | |||||||
28774582-C-G | 26628435-C-G | ** | |||||||
28779103-A-G | 26632956-A-G | ** | |||||||
56822219-G-T | ** | ||||||||
26328775-A-G | 24182628-A-G | P1_Y1 | ** | ||||||
24883598-T-C | 22737451-T-C | g1 | ** | ||||||
22851568-C-G | 20689682-C-G | ** | |||||||
23199807-T-G | 21037921-T-G | ** | |||||||
22954826-G-A | 20792940-G-A | ** | |||||||
22985853-G-T | 20823967-G-T | ** | |||||||
23004671-G-A | 20842785-G-A | ** | |||||||
23184964-G-T | 21023078-G-T | ** | |||||||
23192902-C-A | 21031016-C-A | ** | |||||||
23199757-CA-T | 21037871-CA-T | ** | |||||||
23261608-T-C | 21099722-T-C | ** | |||||||
24513339-C-A | 22367192-C-A | ** | |||||||
23285195-T-C | 21123309-T-C | ** | |||||||
23360741-C-G | 21198855-C-G | ** | |||||||
23377395-C-A | 21215509-C-A | ** | |||||||
23419079-C-A | 21257193-C-A | ** | |||||||
24044002-C-A | 21897855-C-A | ** | |||||||
24475300-G-T | 22329153-G-T | ** | |||||||
19299910-A-T | 17188030-A-T | ** | |||||||
19254425-C-A | 17142545-C-A | ** | |||||||
15092614-T-A | 12980703-T-A | ** | |||||||
16045626-G-A | 13933746-G-A | ** | |||||||
15742196-A-G | 13630316-A-G | ** | |||||||
15763346-T-C | 13651466-T-C | ** | |||||||
15767180-C-A | 13655300-C-A | ** | |||||||
15790474-C-T | 13678594-C-T | ** | |||||||
15922472-G-T | 13810592-G-T | ** | |||||||
16016157-T-C | 13904277-T-C | ** | |||||||
16071222-G-T | 13959342-G-T | ** | |||||||
15735390-C-A | 13623510-C-A | ** | |||||||
16091137-C-A | 13979257-C-A | ** | |||||||
16272970-C-A | 14161090-C-A | ** | |||||||
16405372-G-T | 14293492-G-T | ** | |||||||
16426748-C-T | 14314868-C-T | ** | |||||||
16429655-C-A | 14317775-C-A | ** | |||||||
16429921-C-A | 14318041-C-A | ** | |||||||
15741402-G-T | 13629522-G-T | ** | |||||||
15680050-C-A | 13568170-C-A | ** | |||||||
16551014-A-T | 14439134-A-T | ** | |||||||
15352915-G-A | 13241034-G-A | ** | |||||||
15131797-C-G | 13019884-C-G | ** | |||||||
6516765-C-T | 6648724-C-T | ** | |||||||
15212609-C-A | 13100695-C-A | ** | |||||||
15278786-AT-A | 13166880-AT-A | ** | |||||||
15290175-C-A | 13178274-C-A | ** | |||||||
15324263-C-A | 13212381-C-A | ** | |||||||
15357876-A-T | 13245995-A-T | ** | |||||||
15619180-TA-T | 13507300-TA-T | ** | |||||||
15379802-G-A | 13267922-G-A | ** | |||||||
15380612-G-T | 13268732-G-T | ** | |||||||
15496993-G-A | 13385113-G-A | ** | |||||||
15499516-C-A | 13387636-C-A | ** | |||||||
15541944-C-T | 13430064-C-T | ** | |||||||
15558040-C-A | 13446160-C-A | ** | |||||||
16514534-T-C | 14402654-T-C | ** | |||||||
16614649-T-C | 14502769-T-C | ** | |||||||
19216507-G-A | 17104627-G-A | ** | |||||||
18447640-CT-C | 16335760-CT-C | P6_Dst | ** | ||||||
18039952-C-A | 15928072-C-A | ** | |||||||
18059952-C-A | 15948072-C-A | ** | |||||||
18154329-A-C | 16042449-A-C | ** | |||||||
18185302-C-A | 16073422-C-A | ** | |||||||
18185543-G-A | 16073663-G-A | ** | |||||||
18283911-A-T | 16172031-A-T | P6_Prx | ** | ||||||
18753422-A-G | 16641542-A-G | ** | |||||||
17928573-C-A | 15816693-C-A | ** | |||||||
18933653-T-C | 16821773-T-C | ** | |||||||
18980420-A-T | 16868540-A-T | ** | |||||||
19053090-C-A | 16941210-C-A | ** | |||||||
19053226-C-T | 16941346-C-T | ** | |||||||
19209830-A-T | 17097950-A-T | ** | |||||||
19213727-C-A | 17101847-C-A | ** | |||||||
17963640-C-T | 15851760-C-T | ** | |||||||
17916378-C-A | 15804498-C-A | ** | |||||||
16618793-G-T | 14506913-G-T | ** | |||||||
17372480-A-G | 15260600-A-G | ** | |||||||
16673631-A-C | 14561751-A-C | ** | |||||||
16705488-T-A | 14593608-T-A | ** | |||||||
16882065-C-T | 14770185-C-T | ** | |||||||
16883916-T-G | 14772036-T-G | ** | |||||||
17227692-C-A | 15115812-C-A | ** | |||||||
17268044-T-A | 15156164-T-A | ** | |||||||
17483126-C-A | 15371246-C-A | ** | |||||||
17822477-T-A | 15710597-T-A | ** | |||||||
17561619-G-T | 15449739-G-T | ** | |||||||
17648530-C-A | 15536650-C-A | ** | |||||||
17714857-G-T | 15602977-G-T | ** | |||||||
17714918-G-A | 15603038-G-A | ** | |||||||
17716815-C-T | 15604935-C-T | ** | |||||||
17760384-C-A | 15648504-C-A | ** | |||||||
6541022-A-G | 6672981-A-G | ** | |||||||
6983626-T-A | 7115585-T-A | ** | |||||||
6478067-C-A | 6610026-C-A | ** | |||||||
7188349-C-A | 7320308-C-A | ** | |||||||
10868039-C-A | ** | ||||||||
15786568-G-A | 13674688-G-A | ** | |||||||
14825803-C-T | 12713870-C-T | ** | |||||||
14786290-C-A | 12674360-C-A | ** | |||||||
13976789-CA-C | 11856083-CA-C | 8×A | ** | ||||||
10768585-T-A | ** | ||||||||
5935750-C-A | 6067709-C-A | ** | |||||||
14517744-C-A | 12405945-C-A | ** | |||||||
10756111-C-A | ** | ||||||||
11034215-G-T | ** | ||||||||
28636070-C-A | 26489923-C-A | ** | |||||||
7208566-C-A | 7340525-C-A | ** | |||||||
10926784-G-T | ** | ||||||||
16746217-C-A | 14634337-C-A | ** | |||||||
10868056-T-A | FT434773 | ** | |||||||
22166646-C-A | 20004760-C-A | ** | |||||||
4901604-C-A | 5033563-C-A | ** | |||||||
15816455-C-A | 13704575-C-A | ** | |||||||
14196344-G-A | 12075638-G-A | ** | |||||||
19547689-C-A | 17435809-C-A | ** | |||||||
18997143-C-A | 16885263-C-A | ** | |||||||
21411717-GCA-G | 19249831-GCA-G | ** | |||||||
20950919-A-AG | 18789033-A-AG | P4_Dst | ** | ||||||
16629332-T-A | 14517452-T-A | ** | |||||||
10914815-C-A | ** | ||||||||
10914807-T-C | ** | ||||||||
10914804-C-A | ** | ||||||||
10914792-T-G | ** | ||||||||
18085420-C-A | 15973540-C-A | ** | |||||||
10868043-C-T | ** | ||||||||
10868060-C-T | FT434774 | ** | |||||||
10033234-C-G | 10195625-C-G | ** | |||||||
14077148-C-A | 11956442-C-A | ** | |||||||
6918500-C-A | 7050459-C-A | ** | |||||||
11645926-T-A | ** | ||||||||
7374498-C-A | 7506457-C-A | ** | |||||||
14196323-C-A | 12075617-C-A | ** | |||||||
19130738-CTTTTTT-C | 17018858-CTTTTTT-C | 33×T | ** | ||||||
14727343-A-TT | 12615411-A-TT | ** | |||||||
18873803-C-A | 16761923-C-A | ** | |||||||
9509663-C-A | 9672054-C-A | ** | |||||||
22092712-C-A | 19930826-C-A | ** | |||||||
10819959-C-A | ** | ||||||||
17775068-G-T | 15663188-G-T | ** | |||||||
6460755-T-C | 6592714-T-C | ** | |||||||
4687558-C-A | 4819517-C-A | ** | |||||||
16048248-C-A | 13936368-C-A | ** | |||||||
10868084-C-A | ** | ||||||||
11016441-C-A | ** | ||||||||
7142208-C-A | 7274167-C-A | ** | |||||||
4178103-G-A | 4310062-G-A | ** | |||||||
19053214-C-T | 16941334-C-T | ** | |||||||
7269630-TTTGC-T | 7401589-TTTGC-T | ** | |||||||
10844707-G-C | ** | ||||||||
15741572-G-T | 13629692-G-T | ** | |||||||
8085741-T-A | 8217700-T-A | ** | |||||||
8085731-A-C | 8217690-A-C | ** | |||||||
27516039-G-T | 25369892-G-T | P1_Y2 | ** | ||||||
15650568-C-A | 13538688-C-A | ** | |||||||
13460174-C-A | 11304498-C-A | ** | |||||||
10868116-T-TTCTAC | ** | ||||||||
10868091-C-T | ** | ||||||||
16071857-C-A | 13959977-C-A | ** | |||||||
27633692-T-C | 25487545-T-C | P1_Y2 | ** | ||||||
10887859-C-A | ** | ||||||||
10654331-G-T | ** | ||||||||
10768615-T-A | ** | ||||||||
10768603-T-G | ** | ||||||||
10768586-C-A | ** | ||||||||
16462524-C-A | 14350644-C-A | ** | |||||||
10755549-CTCCAT-C | ** | ||||||||
18905316-T-A | 16793436-T-A | ** | |||||||
21362388-C-A | 19200502-C-A | ** | |||||||
3033106-ATT-A | 3165065-ATT-A | 9×T | ** | ||||||
22314782-G-C | 20152896-G-C | DYZ19 | ** | ||||||
7201936-C-A | 7333895-C-A | FT75732 | ** | ||||||
18159209-C-A | 16047329-C-A | ** | |||||||
23433575-C-A | 21271689-C-A | ** | |||||||
13472204-A-C | 11316528-A-C | ** | |||||||
13989006-C-A | 11868300-C-A | ** | |||||||
10780308-C-A | ** | ||||||||
18849454-C-A | 16737574-C-A | ** | |||||||
10023745-C-A | 10186136-C-A | ** | |||||||
13472215-A-C | 11316539-A-C | ** | |||||||
6694800-C-A | 6826759-C-A | ** | |||||||
13287153-C-A | 11131477-C-A | ** | |||||||
19412548-C-A | 17300668-C-A | ** | |||||||
2773850-CAA-C | 2905809-CAA-C | 11×A | ** | ||||||
13472201-A-G | 11316525-A-G | ** | |||||||
19088497-G-T | 16976617-G-T | ** | |||||||
17103600-G-T | 14991720-G-T | ** | |||||||
16005445-C-A | 13893565-C-A | Z19280 | ** | ||||||
14033954-GCA-G | 11913248-GCA-G | ** | |||||||
10004885-A-G | 10167276-A-G | FGC60878 | ** | ||||||
8481148-T-A | 8613107-T-A | ** | |||||||
10768619-A-G | ** | ||||||||
7240690-C-A | 7372649-C-A | ** | |||||||
7306597-C-A | 7438556-C-A | ** | |||||||
4604348-C-A | 4736307-C-A | ** | |||||||
13597025-A-C | 11441349-A-C | ** | |||||||
10070068-A-G | 10232459-A-G | ** | |||||||
10070057-AG-A | 10232448-AG-A | ** | |||||||
10070053-C-A | 10232444-C-A | ** | |||||||
15381254-C-A | 13269374-C-A | ** | |||||||
14458330-A-G | 12337603-A-G | ** | |||||||
3877050-C-A | 4009009-C-A | ** | |||||||
10682690-CTTCCA-C | ** | ||||||||
22113183-G-T | 19951297-G-T | ** | |||||||
5073850-C-A | 5205809-C-A | ** | |||||||
13976696-A-G | 11855990-A-G | ** | |||||||
26970792-C-A | 24824645-C-A | P1_r4 | ** | ||||||
7033408-C-A | 7165367-C-A | ** | |||||||
10894056-C-A | ** | ||||||||
10983947-CTCCATTCCATTCCAT-C | ** | ||||||||
10989110-A-C | ** | ||||||||
10757037-CTCCAT-C | ** | ||||||||
18853490-C-A | 16741610-C-A | ** | |||||||
6096437-GTT-G | 6228396-GTT-G | 11×T | ** | ||||||
7054186-C-A | 7186145-C-A | ** | |||||||
10885533-ATCCAC-A | ** | ||||||||
17737618-CAAA-C | 15625738-CAAA-C | 14×A | ** | ||||||
14174765-C-A | 12054059-C-A | ** | |||||||
13974681-C-A | 11853975-C-A | ** | |||||||
2719074-C-T | 2851033-C-T | ** | |||||||
14862939-ATT-A | 12751005-ATT-A | 12×T | ** | ||||||
10868041-C-T | ** | ||||||||
8481967-T-TAA | 8613926-T-TAA | 15×A | ** | ||||||
17374605-C-A | 15262725-C-A | ** | |||||||
11001557-T-C | ** | ||||||||
5211935-C-A | 5343894-C-A | ** | |||||||
56848801-G-C | ** | ||||||||
7724712-C-A | 7856671-C-A | ** | |||||||
4470667-G-A | 4602626-G-A | ** | |||||||
5081320-C-A | 5213279-C-A | ** | |||||||
4998304-T-C | 5130263-T-C | ** | |||||||
4980879-T-C | 5112838-T-C | ** | |||||||
4951499-A-T | 5083458-A-T | ** | |||||||
4930986-G-A | 5062945-G-A | ** | |||||||
4870000-C-A | 5001959-C-A | ** | |||||||
4790614-G-T | 4922573-G-T | ** | |||||||
4628447-C-A | 4760406-C-A | ** | |||||||
4625347-G-T | 4757306-G-T | ** | |||||||
4616474-G-A | 4748433-G-A | ** | |||||||
4604400-T-C | 4736359-T-C | ** | |||||||
4590061-A-T | 4722020-A-T | ** | |||||||
4586088-C-A | 4718047-C-A | ** | |||||||
4480234-C-A | 4612193-C-A | ** | |||||||
4413058-G-T | 4545017-G-T | ** | |||||||
5204496-T-C | 5336455-T-C | ** | |||||||
4100284-G-T | 4232243-G-T | ** | |||||||
3991008-C-A | 4122967-C-A | ** | |||||||
4005442-T-C | 4137401-T-C | ** | |||||||
4010640-G-T | 4142599-G-T | ** | |||||||
4010694-A-G | 4142653-A-G | ** | |||||||
4017055-C-T | 4149014-C-T | ** | |||||||
4094393-T-A | 4226352-T-A | ** | |||||||
11013234-A-G | ** | ||||||||
4412575-C-A | 4544534-C-A | ** | |||||||
4236649-T-C | 4368608-T-C | ** | |||||||
4262586-C-A | 4394545-C-A | ** | |||||||
4271348-G-T | 4403307-G-T | ** | |||||||
4286075-T-C | 4418034-T-C | ** | |||||||
4326296-C-A | 4458255-C-A | ** | |||||||
4374258-A-G | 4506217-A-G | ** | |||||||
5097691-C-A | 5229650-C-A | ** | |||||||
5212024-A-T | 5343983-A-T | ** | |||||||
3840375-C-A | 3972334-C-A | ** | |||||||
5999615-C-A | 6131574-C-A | ** | |||||||
6429694-C-A | 6561653-C-A | ** | |||||||
6405057-G-A | 6537016-G-A | FT233745 | ** | ||||||
6395016-C-A | 6526975-C-A | ** | |||||||
6370337-G-C | 6502296-G-C | ** | |||||||
6357926-A-G | 6489885-A-G | ** | |||||||
6280424-A-G | 6412383-A-G | IR3_Dst | ** | ||||||
6240896-T-G | 6372855-T-G | IR3_Dst | ** | ||||||
6236186-G-A | 6368145-G-A | IR3_Dst | ** | ||||||
6236150-A-C | 6368109-A-C | IR3_Dst | ** | ||||||
6086234-A-T | 6218193-A-T | ** | |||||||
6079460-A-G | 6211419-A-G | ** | |||||||
6067330-C-G | 6199289-C-G | FT66884 | ** | ||||||
6067297-T-A | 6199256-T-A | ** | |||||||
6011980-C-A | 6143939-C-A | ** | |||||||
5987122-G-T | 6119081-G-T | ** | |||||||
5246661-C-A | 5378620-C-A | ** | |||||||
5787323-G-T | 5919282-G-T | ** | |||||||
5397227-C-T | 5529186-C-T | ** | |||||||
5421195-T-C | 5553154-T-C | ** | |||||||
5442315-C-A | 5574274-C-A | ** | |||||||
5495341-A-C | 5627300-A-C | ** | |||||||
5612763-T-A | 5744722-T-A | ** | |||||||
5625979-T-A | 5757938-T-A | ** | |||||||
5829808-A-C | 5961767-A-C | ** | |||||||
5978451-C-A | 6110410-C-A | ** | |||||||
5897254-G-T | 6029213-G-T | ** | |||||||
5923398-A-G | 6055357-A-G | FTA37415 | ** | ||||||
5936150-A-G | 6068109-A-G | ** | |||||||
5936197-TGG-T | 6068156-TGG-T | ** | |||||||
5936221-C-T | 6068180-C-T | ** | |||||||
5968723-C-T | 6100682-C-T | ** | |||||||
3865542-A-G | 3997501-A-G | FTB50048 | ** | ||||||
4223477-G-T | 4355436-G-T | ** | |||||||
3812819-C-A | 3944778-C-A | ** | |||||||
7132823-C-A | 7264782-C-A | ** | |||||||
3104786-C-A | 3236745-C-A | ** | |||||||
3096137-G-T | 3228096-G-T | ** | |||||||
3096109-CT-C | 3228068-CT-C | ** | |||||||
11004274-C-A | ** | ||||||||
3046641-T-C | 3178600-T-C | ** | |||||||
3046633-T-C | 3178592-T-C | ** | |||||||
2865813-A-T | 2997772-A-T | ** | |||||||
2773277-G-T | 2905236-G-T | ** | |||||||
2773241-G-T | 2905200-G-T | ** | |||||||
2701280-C-G | 2833239-C-G | ** | |||||||
2681055-C-A | 2813014-C-A | FT59739 | ** | ||||||
18059754-C-A | 15947874-C-A | ** | |||||||
20603820-A-G | 18441934-A-G | P5_Dst | 10×AG | ** | |||||
3126655-C-A | 3258614-C-A | ** | |||||||
15786509-C-A | 13674629-C-A | ** | |||||||
3756427-G-T | 3888386-G-T | ** | |||||||
7256230-G-T | 7388189-G-T | ** | |||||||
4723015-C-A | 4854974-C-A | ** | |||||||
4968263-C-T | 5100222-C-T | ** | |||||||
10026737-C-A | 10189128-C-A | ** | |||||||
14992451-C-A | 12880536-C-A | ** | |||||||
10894769-C-A | ** | ||||||||
18867362-TTG-T | 16755482-TTG-T | ** | |||||||
17032419-C-A | 14920539-C-A | ** | |||||||
18930674-C-A | 16818794-C-A | ** | |||||||
14093501-C-A | 11972795-C-A | ** | |||||||
3116918-G-T | 3248877-G-T | ** | |||||||
3066160-A-G | 3198119-A-G | ** | |||||||
6807977-C-A | 6939936-C-A | ** | |||||||
5524243-C-A | 5656202-C-A | ** | |||||||
56830165-C-T | ** | ||||||||
3680324-A-G | 3812283-A-G | ** | |||||||
3613894-G-T | 3745853-G-T | ** | |||||||
3151747-T-A | 3283706-T-A | ** | |||||||
3558133-G-T | 3690092-G-T | ** | |||||||
14361843-C-A | 12241138-C-A | ** | |||||||
3512346-T-C | 3644305-T-C | ** | |||||||
7409475-C-A | 7541434-C-A | ** | |||||||
3455057-G-T | 3587016-G-T | ** | |||||||
3691871-G-C | 3823830-G-C | ** | |||||||
3454829-G-T | 3586788-G-T | ** | |||||||
3418227-C-A | 3550186-C-A | ** | |||||||
3398651-G-C | 3530610-G-C | ** | |||||||
3398634-C-A | 3530593-C-A | ** | |||||||
3389587-G-C | 3521546-G-C | FT6998 | ** | ||||||
3728319-A-G | 3860278-A-G | ** | |||||||
3340703-C-A | 3472662-C-A | ** | |||||||
3334762-A-T | 3466721-A-T | ** | |||||||
3279506-C-A | 3411465-C-A | ** | |||||||
24517734-T-C | 22371587-T-C | *** | |||||||
23505317-A-G | 21343431-A-G | *** | |||||||
14576107-C-A | 12464307-C-A | *** | |||||||
14479467-C-A | 12358736-C-A | *** | |||||||
56763518-A-G | *** | ||||||||
7113809-C-A | 7245768-C-A | *** | |||||||
14543954-C-A | 12432155-C-A | *** | |||||||
13869597-A-C | 11748891-A-C | *** | |||||||
14214244-C-A | 12093538-C-A | FT209537 | *** | ||||||
28778807-C-A | 26632660-C-A | *** | |||||||
56844367-G-T | *** | ||||||||
14590386-C-A | 12478586-C-A | *** | |||||||
7318735-C-A | 7450694-C-A | *** | |||||||
16431229-CAAAA-C | 14319349-CAAAA-C | 15×A | *** | ||||||
28813389-A-G | 26667242-A-G | *** | |||||||
22425760-T-C | 20263874-T-C | DYZ19 | *** | ||||||
28545696-CA-C,CAA | 26399549-CA-C,CAA | 26×A | *** | ||||||
13481960-A-T | 11326284-A-T | *** | |||||||
14376501-C-A | 12255797-C-A | *** | |||||||
8501759-C-A | 8633718-C-A | *** | |||||||
9056948-C-A | *** | ||||||||
11643659-G-A | *** | ||||||||
10914767-C-A | *** | ||||||||
17362608-T-A | 15250728-T-A | *** | |||||||
10914766-A-T | *** | ||||||||
10914761-T-C | *** | ||||||||
10914748-T-A | *** | ||||||||
13838480-T-A | 11717774-T-A | *** | |||||||
15288779-C-A | 13176878-C-A | *** | |||||||
24503106-CAA-C,CA | 22356959-CAA-C,CA | 16×A | *** | ||||||
10959553-C-A | *** | ||||||||
10899012-C-A | *** | ||||||||
10773389-T-A | *** | ||||||||
7761047-GA-G | 7893006-GA-G | 9×A | *** | ||||||
21773868-TA-T | 19611982-TA-T | *** | |||||||
7723056-A-G | 7855015-A-G | *** | |||||||
11649593-G-T | *** | ||||||||
5429432-G-T | 5561391-G-T | *** | |||||||
15358810-A-T | 13246930-A-T | *** | |||||||
9117275-C-A | 9279666-C-A | *** | |||||||
10980808-C-A | *** | ||||||||
11643718-G-A | *** | ||||||||
16476407-C-A | 14364527-C-A | *** | |||||||
10764548-T-C | *** | ||||||||
14372869-TCC-T,TC | 12252165-TCC-T,TC | 12×C | *** | ||||||
19531301-C-A | 17419421-C-A | *** | |||||||
14250389-G-T | 12129683-G-T | *** | |||||||
28784452-A-T | 26638305-A-T | *** | |||||||
14704412-C-A | 12592478-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 49625 | 10835665 | 7873397 | 7952143 |
Kit: 49625 | 9823956 | 8014720 | 7901513 |
Used in age calculations | 10835665 | 8014720 | 7952143 |
Counts of SNPs | 3 | 3 |
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