Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF63/S522 > BY592 > CTS5454

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
24516
BigY2
24516
16123061-T-C 14011181-T-C P8_Prx ***A*
19655976-C-G 17544096-C-G P5_Prx ***A*
24347001-C-A 22200854-C-A P3_t1 ***A*
28817517-T-A 26671370-T-A A*
5359157-A-T 5491116-A-T L625
6632547-A-C 6764506-A-C Y60731 YY++
2712780-A-G 2844739-A-G Y60164 YY++
7666775-T-C 7798734-T-C Y62344 YY++
8378014-G-T 8509973-G-T Y63614 YY++
8495734-T-G 8627693-T-G Y63918 YY++
8524966-T-A 8656925-T-A Y63988 YY++
9742308-T-C 9904699-T-C BY80690 IR3_Prx ++
13631007-C-T 11475331-C-T BY86753 **+
13827851-G-A 11707145-G-A BY90783 ++
14321695-C-A 12200989-C-A BY54620 YY++
14541778-A-T 12429979-A-T Y66874 YY++
14822449-A-G 12710516-A-G Y67269 YY++
15451752-G-C 13339872-G-C Y68259 YY++
15457631-A-G 13345751-A-G Y68269 YY++
16196343-G-A 14084463-G-A BY43426 YY++
16316045-C-T 14204165-C-T Y69650 YY++
16957507-A-T 14845627-A-T Y70795 YY++
18218848-G-C 16106968-G-C Y73300 Y+**
18547786-G-A 16435906-G-A Y73594 Y++
18710630-G-A 16598750-G-A Y73911 YY++
20827152-G-A 18665266-G-A Y75657 P4_Gap ++
21305993-G-A 19144107-G-A Y76192 YY++
22222089-G-C 20060203-G-C BY213026 DYZ19 ***+
22245911-C-T 20084025-C-T DYZ19 +
22457582-C-T 20295696-C-T BY219950 DYZ19 ***+
22556481-T-C 20394595-T-C Y78211 YY++
23255752-A-G 21093866-A-G Y79564 YY++
23492460-C-A 21330574-C-A Y79964 YY++
23796815-A-G 21634929-A-G Y80365 Y++
23812301-C-T 21650415-C-T BY147899 Y++
24071551-CT-C 21925404-CT-C P3_b1 +**
15653-C-A +
17299921-CATAGATAG-C 15188041-CATAGATAG-C 12×ATAG*
7611640-TACACACACACAC-T 7743599-TACACACACACAC-T 16×AC****
22279155-T-C 20117269-T-C DYZ19 ****
22302193-G-A 20140307-G-A DYZ19 ****
18772642-T-TGATTTGATTAATC 16660762-T-TGATTTGATTAATC *
15536385-T-G 13424505-T-G **
4502616-C-T 4634575-C-T FT320842 **
17321175-T-G 15209295-T-G **
24235417-G-TTT 22089270-G-TTT P3_b1 **
4212509-A-G 4344468-A-G **
26010268-G-GTATATATA 23864121-G-GTATATATA P1_Y1 21×TA**
7649147-C-A 7781106-C-A **
23304424-C-A 21142538-C-A **
13237669-C-A 11081993-C-A **
27437-C-A **
21234758-GT-G 19072872-GT-G **
5426365-C-CTT 5558324-C-CTT 16×T**
10797704-C-T **
10890395-G-C **
5368254-G-T 5500213-G-T **
14712590-G-T 12600657-G-T **
10899107-C-A **
14509472-C-A 12397677-C-A **
5200697-G-T 5332656-G-T **
11029176-T-C **
10956764-C-A **
10795305-C-A **
8379558-C-A 8511517-C-A **
16971445-G-T 14859565-G-T **
14251558-C-A 12130852-C-A **
33955-C-A **
13642757-C-A 11487081-C-A **
10848069-TTCCG-T **
10892142-G-A **
5755144-C-A 5887103-C-A **
26376523-C-A 24230376-C-A P1_Y1 **
11027535-G-C **
3992115-C-A 4124074-C-A **
19187419-TCCTG-T 17075539-TCCTG-T **
11653986-C-A **
10848041-T-TC **
10984794-C-A FT439222 **
14934304-TTC-T 12822369-TTC-T **
23415342-ATTTT-A 21253456-ATTTT-A 21×T**
10925925-T-C **
14780946-C-A 12669016-C-A **
15866265-TC-T 13754385-TC-T **
7363962-A-G 7495921-A-G **
21320055-A-G 19158169-A-G **
11030054-C-A **
10761469-T-C **
6465472-C-A 6597431-C-A **
11648495-C-T **
26435398-G-T 24289251-G-T P1_Y1 **
20376561-G-A 18214675-G-A P5_Dst **
14124162-C-A 12003456-C-A **
15682349-C-A 13570469-C-A **
15049946-C-A 12938037-C-A **
6012877-A-C 6144836-A-C **
5977016-C-A 6108975-C-A **
17648250-C-A 15536370-C-A **
3343815-G-C 3475774-G-C **
8807253-A-T 8939212-A-T **
15556709-C-A 13444829-C-A **
10956339-C-A **
6646770-C-A 6778729-C-A **
21073328-T-C 18911442-T-C **
22876492-C-A 20714606-C-A **
4580630-C-A 4712589-C-A **
19448428-C-A 17336548-C-A **
7164422-G-A 7296381-G-A **
5603520-C-A 5735479-C-A **
23310562-A-C 21148676-A-C **
9773407-C-A 9935798-C-A FTA35000 **
10976239-T-C **
7028674-C-A 7160633-C-A **
15128121-CTTTTTT-C 13016208-CTTTTTT-C 18×T**
28744850-C-A 26598703-C-A **
10816221-C-A **
7134180-C-A 7266139-C-A **
22076273-C-A 19914387-C-A **
23262770-G-A 21100884-G-A **
3663304-C-A 3795263-C-A **
10887311-G-T **
22520532-C-A 20358646-C-A **
14255337-G-A 12134631-G-A **
5420676-C-A 5552635-C-A **
7313342-C-A 7445301-C-A **
4129164-T-A 4261123-T-A **
10986516-G-C **
7717652-T-C 7849611-T-C **
14461266-C-A 12340539-C-A **
19304119-A-G 17192239-A-G **
10657521-T-A **
3051345-C-A 3183304-C-A **
4504643-C-A 4636602-C-A **
7590709-C-A 7722668-C-A **
21677980-C-A 19516094-C-A **
10661035-A-ACCATT **
28758005-C-A 26611858-C-A **
10783296-C-A **
20579181-C-T 18417295-C-T P5_Dst **
4585575-C-A 4717534-C-A **
4538482-C-A 4670441-C-A **
9602674-A-G 9765065-A-G IR3_Prx **
10803000-C-A **
10954028-C-T **
4926242-G-T 5058201-G-T **
21268864-C-A 19106978-C-A **
6774005-C-A 6905964-C-A **
11000382-C-A **
18753021-T-C 16641141-T-C **
4114729-C-A 4246688-C-A **
15682312-C-A 13570432-C-A **
7590682-C-A 7722641-C-A **
10026828-C-A 10189219-C-A **
11654052-C-T **
14589901-C-A 12478101-C-A **
2948801-C-A 3080760-C-A **
4236062-C-T 4368021-C-T **
28633017-C-A 26486870-C-A **
9932780-T-C 10095171-T-C **
21890903-G-T 19729017-G-T **
26463131-TTTG-T 24316984-TTTG-T P1_Y1 **
10983355-G-T **
17127371-C-A 15015491-C-A **
4371087-C-A 4503046-C-A **
7476493-C-A 7608452-C-A IR1_L **
21698376-C-A 19536490-C-A **
11027470-C-A **
20697868-T-C 18535982-T-C P4_Prx **
9934673-T-C 10097064-T-C **
4561489-C-A 4693448-C-A **
19312299-C-A 17200419-C-A **
2665636-C-A 2797595-C-A **
20137223-G-T 18025343-G-T P5_Dst **
14483663-C-A 12362932-C-A **
2774703-T-C 2906662-T-C **
6368756-G-T 6500715-G-T **
21164734-C-A 19002848-C-A **
3178181-C-A 3310140-C-A **
56858153-T-TAAAA 9×A**
2729923-G-T 2861882-G-T **
2949212-TC-T 3081171-TC-T **
3093903-T-C 3225862-T-C **
3093916-A-C 3225875-A-C **
3093918-A-G 3225877-A-G **
3165297-T-C 3297256-T-C **
3328780-C-A 3460739-C-A **
3329536-GT-G 3461495-GT-G **
3433801-G-C 3565760-G-C **
3436213-A-T 3568172-A-T **
3515150-G-A 3647109-G-A **
3544481-C-G 3676440-C-G **
3620852-G-T 3752811-G-T **
3663256-C-A 3795215-C-A **
3695924-C-A 3827883-C-A **
3705095-G-C 3837054-G-C **
3779192-A-T 3911151-A-T **
3832092-T-A 3964051-T-A **
3878285-A-T 4010244-A-T **
3883304-G-T 4015263-G-T **
4076163-A-T 4208122-A-T **
4138271-C-G 4270230-C-G **
4147980-T-C 4279939-T-C **
4302524-C-A 4434483-C-A **
4387789-A-G 4519748-A-G **
4541113-C-A 4673072-C-A **
4547945-G-A 4679904-G-A **
4582451-T-C 4714410-T-C **
4594874-A-T 4726833-A-T **
4718080-A-T 4850039-A-T **
4840768-C-T 4972727-C-T **
4960490-C-A 5092449-C-A **
5111830-C-A 5243789-C-A **
5171592-C-G 5303551-C-G **
5185442-C-A 5317401-C-A **
5186415-C-G 5318374-C-G **
5191523-C-T 5323482-C-T **
5220468-C-G 5352427-C-G **
5241688-A-G 5373647-A-G **
5291998-T-G 5423957-T-G **
5313707-A-C 5445666-A-C **
5313806-A-C 5445765-A-C **
5318369-T-C 5450328-T-C **
5470826-CT-C 5602785-CT-C **
5536563-T-C 5668522-T-C **
5577423-A-C 5709382-A-C **
5668891-G-A 5800850-G-A **
5668916-T-A 5800875-T-A **
5668953-C-A 5800912-C-A **
5755021-C-G 5886980-C-G **
5761028-T-A 5892987-T-A **
5799062-T-C 5931021-T-C **
6432936-G-C 6564895-G-C **
6637207-G-A 6769166-G-A **
6816699-G-A 6948658-G-A **
7107642-A-T 7239601-A-T **
7114089-C-A 7246048-C-A **
7142561-G-A 7274520-G-A **
7152854-T-C 7284813-T-C **
7166429-C-T 7298388-C-T **
7301460-A-T 7433419-A-T **
7313364-A-G 7445323-A-G **
7313459-G-C 7445418-G-C **
7313472-T-A 7445431-T-A **
7313474-T-C 7445433-T-C **
7462609-C-A 7594568-C-A IR1_L **
7641011-C-A 7772970-C-A **
8013444-G-A 8145403-G-A **
8230383-A-T 8362342-A-T **
8732752-C-A 8864711-C-A **
8807293-C-A 8939252-C-A **
8816791-A-G 8948750-A-G **
8913389-A-G 9045348-A-G **
8988080-T-C 9150471-T-C **
9015844-A-T 9178235-A-T **
9340538-G-C 9502929-G-C **
9446211-C-A 9608602-C-A **
9505875-G-T 9668266-G-T **
9511842-G-T 9674233-G-T **
9521273-T-G 9683664-T-G **
9666657-G-A 9829048-G-A IR3_Prx **
9723798-G-T 9886189-G-T IR3_Prx **
9825616-T-G 9988007-T-G **
9930269-C-A 10092660-C-A **
9932787-T-C 10095178-T-C FT426557 **
9945486-A-C 10107877-A-C **
9986243-T-C 10148634-T-C **
10632639-C-A **
10657522-T-C **
10660633-C-T **
10677652-A-T **
10692130-C-A **
10757054-C-A **
10809320-CTCCACTCCAT-C **
10811880-G-T **
10842645-C-A **
10843852-C-A **
10846849-T-A **
10865605-T-C **
10875891-C-G **
10885515-C-A **
10925893-T-C **
10925919-T-TCCACC **
10925930-C-G **
10925948-T-A **
10925963-T-A **
10925977-AC-A **
10927548-C-A **
10947024-C-A **
10948477-A-G **
10953356-C-A **
10954034-T-A **
10963052-C-T **
10967623-G-A **
10973721-C-A **
11006474-C-G **
11028124-C-A **
11030820-T-A **
13226842-A-G 11071166-A-G **
13278335-C-A 11122659-C-A **
13332699-G-T 11177023-G-T **
13393788-T-C 11238112-T-C **
13433708-C-A 11278032-C-A **
13491767-C-A 11336091-C-A FT444291 **
13565038-G-C 11409362-G-C **
13582414-A-G 11426738-A-G **
13593603-G-T 11437927-G-T **
13596379-C-A 11440703-C-A **
13640002-C-T 11484326-C-T **
11666824-G-C **
11669096-C-A **
11672465-T-C **
13856980-A-C 11736274-A-C **
13908290-G-A 11787584-G-A **
13909361-C-A 11788655-C-A **
13929862-A-C 11809156-A-C **
13940885-G-A 11820179-G-A **
13944396-C-A 11823690-C-A **
13944401-C-A 11823695-C-A **
13983910-T-C 11863204-T-C **
13996533-C-A 11875827-C-A **
13997749-C-A 11877043-C-A **
14009457-T-A 11888751-T-A **
14053344-C-A 11932638-C-A **
14065462-A-C 11944756-A-C **
14067740-T-C 11947034-T-C **
14203556-G-A 12082850-G-A **
14230037-A-G 12109331-A-G **
14430396-A-T 12309669-A-T **
14485729-C-A 12364998-C-A **
14508437-C-A 12396642-C-A **
14510332-C-A 12398537-C-A **
14524249-C-A 12412450-C-A **
14550205-C-T 12438406-C-T **
14585808-G-T 12474008-G-T **
14687620-TA-T 12575686-TA-T 8×A**
14712538-T-G 12600605-T-G **
14712551-A-G 12600618-A-G **
14712576-A-G 12600643-A-G **
14931963-G-A 12820028-G-A **
15168949-T-C 13057035-T-C **
15168975-G-A 13057061-G-A **
15221186-C-A 13109272-C-A **
15297275-C-A 13185374-C-A **
15399899-G-C 13288019-G-C **
15399967-A-T 13288087-A-T **
15431914-T-C 13320034-T-C **
15606522-C-A 13494642-C-A **
15626704-T-A 13514824-T-A **
15775423-T-C 13663543-T-C **
15789132-A-T 13677252-A-T **
15832168-A-C 13720288-A-C **
15924128-C-A 13812248-C-A **
15995263-G-T 13883383-G-T **
16008620-C-T 13896740-C-T **
16050364-T-C 13938484-T-C **
16053960-C-A 13942080-C-A **
16057067-C-A 13945187-C-A **
16062901-G-A 13951021-G-A **
16075238-A-G 13963358-A-G **
16278384-G-A 14166504-G-A FTB78035 **
16295772-C-T 14183892-C-T **
16342587-G-A 14230707-G-A **
16412874-A-G 14300994-A-G **
16636911-C-T 14525031-C-T **
16654834-G-A 14542954-G-A **
16677257-CA-C 14565377-CA-C **
16933163-G-A 14821283-G-A **
17036577-T-A 14924697-T-A **
17085687-T-G 14973807-T-G **
17362733-CT-C 15250853-CT-C **
17629772-C-A 15517892-C-A **
17779600-C-A 15667720-C-A **
17884159-C-A 15772279-C-A **
17923749-A-G 15811869-A-G **
18178020-T-TAA 16066140-T-TAA **
18183163-C-A 16071283-C-A **
18188094-C-CA 16076214-C-CA **
18201561-CAAAA-C 16089681-CAAAA-C 14×A**
18226302-C-T 16114422-C-T **
18772638-G-GTTCAAATT 16660758-G-GTTCAAATT **
18848505-G-T 16736625-G-T **
18955735-C-A 16843855-C-A **
19044450-A-C 16932570-A-C **
19245925-C-A 17134045-C-A **
19246860-G-C 17134980-G-C **
19296896-T-C 17185016-T-C **
19377061-C-A 17265181-C-A **
19524726-T-G 17412846-T-G **
19554774-C-A 17442894-C-A **
19560314-C-T 17448434-C-T **
19610066-C-A 17498186-C-A P5_Prx **
19676193-T-A 17564313-T-A P5_Prx **
20579120-A-ATG 18417234-A-ATG P5_Dst **
20579168-G-A 18417282-G-A P5_Dst **
20677950-T-C 18516064-T-C P4_Prx **
21422215-A-G 19260329-A-G **
21450668-G-T 19288782-G-T **
21513968-C-A 19352082-C-A **
21551468-A-C 19389582-A-C **
21551614-C-T 19389728-C-T **
21614808-C-G 19452922-C-G **
21673076-G-A 19511190-G-A **
21747463-C-A 19585577-C-A **
21794562-G-T 19632676-G-T **
21796377-C-G 19634491-C-G **
21849112-G-T 19687226-G-T **
21888245-T-A 19726359-T-A **
22085829-C-T 19923943-C-T **
22176274-T-C 20014388-T-C FT85240 **
22238546-T-A 20076660-T-A DYZ19 **
22242052-A-T 20080166-A-T DYZ19 **
22564782-G-T 20402896-G-T **
22715127-G-T 20553241-G-T **
22715175-C-A 20553289-C-A **
22787079-C-A 20625193-C-A **
22798388-G-T 20636502-G-T **
22997055-C-A 20835169-C-A **
23052369-C-A 20890483-C-A **
23143018-C-A 20981132-C-A **
23225947-G-T 21064061-G-T **
23448960-T-C 21287074-T-C **
23505064-CA-C 21343178-CA-C **
23569103-G-A 21407217-G-A FT299402 **
23579339-G-T 21417453-G-T **
24212266-C-A 22066119-C-A P3_b1 **
24283359-AGAAG-A 22137212-AGAAG-A P3_t1 **
24415791-T-A 22269644-T-A **
24432716-T-C 22286569-T-C **
24513382-C-A 22367235-C-A **
24888009-C-T 22741862-C-T g1 **
27861906-A-G 25715759-A-G P1_Y2 **
27862559-AGAGAGAGAGAGAGAGAGAGACAAAGG-A 25716412-AGAGAGAGAGAGAGAGAGAGACAAAGG-A P1_Y2 **
28485735-C-A 26339588-C-A **
28506660-C-A 26360513-C-A **
28560894-T-C 26414747-T-C **
28568086-G-T 26421939-G-T **
28660021-G-A 26513874-G-A **
28705886-C-A 26559739-C-A **
28708247-A-G 26562100-A-G **
28730511-G-T 26584364-G-T **
28757987-GT-G 26611840-GT-G **
28773922-G-T 26627775-G-T **
28775369-CT-C 26629222-CT-C **
28777705-C-A 26631558-C-A **
56838829-T-C **
56851314-A-T **
56851727-A-C **
56851815-T-A **
10612-C-T **
25170892-T-A 23024745-T-A g1 ***
22359958-C-A 20198072-C-A DYZ19 ***
18263624-C-T 16151744-C-T FGC23859 ***
26286111-ATT-A 24139964-ATT-A P1_Y1 ***
9521986-ATATCTATCTATC-A 9684377-ATATCTATCTATC-A 12×TATC***
18347478-GCT-G 16235598-GCT-G P6_Prx ***
19963872-A-G 17851992-A-G P5_Prx ***
22250575-A-G 20088689-A-G DYZ19 ***
22284097-G-A 20122211-G-A DYZ19 ***
22321465-C-G 20159579-C-G DYZ19 ***
22364859-G-C 20202973-G-C DYZ19 ***
22449336-T-C 20287450-T-C DYZ19 ***
24134992-A-G 21988845-A-G P3_b1 ***
24155996-C-G 22009849-C-G P3_b1 ***
24201144-A-G 22054997-A-G P3_b1 ***
25096282-G-A 22950135-G-A g1 ***
28792465-G-T 26646318-G-T ***
10678031-G-T ***
15479942-CTTT-C,CTTTT 13368062-CTTT-C,CTTTT 21×T***
28536043-CAT-C 26389896-CAT-C ***
10880324-TTCCAC-T ***
10755454-GTC-CTC,G ***
15108916-CTTTT-C,CTTT 12997003-CTTTT-C,CTTT 15×T***
13719485-G-C 11563809-G-C ***
10654627-C-A ***
13976083-CAAAA-C,CAAA 11855377-CAAAA-C,CAAA 15×A***
13958572-CA-C 11837866-CA-C ***
18756037-C-A 16644157-C-A ***
7117567-A-T 7249526-A-T 9×T***
4757498-C-A 4889457-C-A ***
3606281-G-A 3738240-G-A ***
4062772-GTT-G 4194731-GTT-G ***
6808571-C-A 6940530-C-A ***
9959346-C-A 10121737-C-A ***
10653193-A-G ***
10834951-C-A ***
10859045-C-A ***
14079532-C-A 11958826-C-A ***
16519155-C-A 14407275-C-A ***
17867901-CTT-C,CT 15756021-CTT-C,CT 14×T***
19037869-CTCTATATATAAATCTATGTAGTT-C 16925989-CTCTATATATAAATCTATGTAGTT-C ***
19415633-C-T 17303753-C-T ***
19528792-C-A 17416912-C-A FGC29543 ***
28716221-C-A 26570074-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual5359157-A-T5491116-A-TGeno 2.0