Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Y107974 > BY39347 > BY39288

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N47171
27356390-T-C 25210243-T-C BY2510 P1_g3 +
17480036-A-G 15368156-A-G BY80068 L96CTS7435 YY+
7590068-C-T 7722027-C-T BY66104 YY+
16416649-C-A 14304769-C-A BY107649 YY+
16753084-C-A 14641204-C-A BY109821 YY+
22786609-A-AC 20624723-A-AC +
13461647-T-A 11305971-T-A **
13854607-T-G 11733901-T-G FT98013 DYZ17 **
27303900-T-C 25157753-T-C P1_g3 **
3436318-T-G 3568277-T-G FGC4602 Z7801 **
3436320-G-T 3568279-G-T **
27254673-A-C 25108526-A-C P1_g3 **
28484934-T-C 26338787-T-C **
4862702-C-G 4994661-C-G **
28688230-C-T 26542083-C-T CTS12739 **
28688283-T-A 26542136-T-A **
13458327-C-A 11302651-C-A ***
13458332-T-A 11302656-T-A ***
13731927-A-AGAATG 11576251-A-AGAATG DYZ17 ***
13857561-G-T 11736855-G-T DYZ17 ***
13867282-C-G 11746576-C-G DYZ17 ***
25705290-ACTCT-A 23559143-ACTCT-A P1_b3 18×CT***
13143001-T-C 10632487-T-C ***
13801196-A-C 11680490-A-C DYZ17 ***
13801198-G-T 11680492-G-T DYZ17 ***
13844087-A-G 11723381-A-G DYZ17 ***
28787388-C-G 26641241-C-G ***
13862160-C-G 11741454-C-G DYZ17 ***
13137922-A-C 10627408-A-C ***
13142008-C-T 10631494-C-T ***
13456325-A-G 11300649-A-G ***
13813212-C-G 11692506-C-G DYZ17 ***
22235437-G-A 20073551-G-A FGC81582 DYZ19 ***
13868257-A-T 11747551-A-T DYZ17 ***
13684879-G-A 11529203-G-A FT448344 DYZ17 ***
13458212-T-A 11302536-T-A ***
13801218-G-A 11680512-G-A DYZ17 ***
13810093-A-G 11689387-A-G DYZ17 ***
13824906-C-A 11704200-C-A DYZ17 ***
13138059-A-T 10627545-A-T ***
28786581-G-A 26640434-G-A FT461769 ***
10034987-G-T 10197378-G-T ***
10034989-C-T 10197380-C-T ***
10034990-A-G 10197381-A-G ***
13137911-T-C 10627397-T-C ***
13137933-C-A 10627419-C-A ***
13139613-T-C 10629099-T-C ***
13140460-G-C,T 10629946-G-C,T ***
13140555-T-C 10630041-T-C ***
13143897-A-C 10633383-A-C ***
13652050-A-G 11496374-A-G DYZ17 ***
13683034-T-A 11527358-T-A BY88299 DYZ17 ***
13683052-C-G 11527376-C-G DYZ17 ***
13683053-A-G 11527377-A-G DYZ17 ***
13805492-A-G 11684786-A-G DYZ17 ***
13809898-G-C 11689192-G-C DYZ17 ***
13832471-C-A,G 11711765-C-A,G DYZ17 ***
13839708-G-A 11719002-G-A DYZ17 ***
13846297-T-A,C 11725591-T-A,C DYZ17 ***
22243103-C-G 20081217-C-G DYZ19 ***
28785521-A-G 26639374-A-G ***
28785524-A-C 26639377-A-C ***
28785536-G-T 26639389-G-T ***
28785541-A-G 26639394-A-G ***
28785543-A-C 26639396-A-C ***
28785586-G-T 26639439-G-T ***
28787262-A-T 26641115-A-T ***
28787516-A-T 26641369-A-T ***
28799840-G-T 26653693-G-T BY151603 ***
58977136-C-T 56830989-C-T ***
13686828-G-C 11531152-G-C DYZ17 ***
13686835-A-C 11531159-A-C DYZ17 ***
13686836-T-A 11531160-T-A DYZ17 ***
13456194-T-TCC 11300518-T-TCC ***
13406062-T-C 11250386-T-C ***
13406077-G-C 11250401-G-C ***
13801835-A-G 11681129-A-G DYZ17 ***
13857570-G-T 11736864-G-T DYZ17 ***
13866751-G-A 11746045-G-A DYZ17 ***
22442439-C-T 20280553-C-T BY10770 DYZ19 ***
9221660-CATATATAT-C 9384051-CATATATAT-C 27×AT***
13485821-G-C 11330145-G-C ***
13652090-A-G 11496414-A-G DYZ17 ***
13833426-G-C 11712720-G-C DYZ17 ***
28786716-A-G 26640569-A-G ***
10017768-T-C 10180159-T-C ***
13138296-G-C 10627782-G-C ***
13140425-C-T 10629911-C-T ***
13194061-C-T 11038385-C-T FGC75375 ***
13194065-T-C 11038389-T-C BY84193 ***
13194123-T-C 11038447-T-C ***
13430166-A-G 11274490-A-G ***
13430263-C-T 11274587-C-T ***
13430286-T-C 11274610-T-C ***
13459388-T-C 11303712-T-C ***
13652035-T-A 11496359-T-A DYZ17 ***
13866844-T-G 11746138-T-G DYZ17 ***
13870098-A-C 11749392-A-C DYZ17 ***
13676494-G-A 11520818-G-A FGC26115 DYZ17 ***
13454940-T-C 11299264-T-C ***
13454969-G-C 11299293-G-C ***
13676764-C-T 11521088-C-T DYZ17 ***
13851466-C-G 11730760-C-G DYZ17 ***
13853025-G-A 11732319-G-A DYZ17 ***
13842906-A-T 11722200-A-T DYZ17 ***
13857586-G-A 11736880-G-A DYZ17 ***
13867426-C-G 11746720-C-G DYZ17 ***
13194050-T-C 11038374-T-C ***
13464901-A-G 11309225-A-G BY85706 ***
13652096-T-A 11496420-T-A DYZ17 ***
13694415-A-T 11538739-A-T DYZ17 ***
13810110-G-A 11689404-G-A DYZ17 5×ATGGA***
13860159-G-C 11739453-G-C DYZ17 ***
28787389-A-G 26641242-A-G ***
13138256-A-C 10627742-A-C ***
13142033-C-T 10631519-C-T ***
13801867-A-C 11681161-A-C S14510 DYZ17 ***
58975502-C-A 56829355-C-A ***
13137896-T-C 10627382-T-C ***
13458315-G-C 11302639-G-C ***
13458322-C-A 11302646-C-A ***
13652027-A-G 11496351-A-G DYZ17 ***
13652085-A-G 11496409-A-G DYZ17 ***
13833547-T-G 11712841-T-G DYZ17 ***
13841211-C-T 11720505-C-T DYZ17 ***
13853022-A-G 11732316-A-G DYZ17 ***
13857571-G-T 11736865-G-T DYZ17 ***
13857583-A-G 11736877-A-G DYZ17 ***
13858060-G-C 11737354-G-C DYZ17 ***
13858083-T-A 11737377-T-A DYZ17 ***
28785528-A-C 26639381-A-C ***
28785593-A-G 26639446-A-G ***
58976242-G-T 56830095-G-T ***
58976557-C-T 56830410-C-T ***
9985752-CA-T 10148143-CA-T ***
9985772-G-T 10148163-G-T ***
9985773-T-G 10148164-T-G ***
10020843-C-G 10183234-C-G ***
13139538-T-C 10629024-T-C ***
24971082-C-CT 22824935-C-CT g1 14×T***
13137994-C-T 10627480-C-T ***
22239352-T-A 20077466-T-A DYZ19 ***
13138178-C-T 10627664-C-T ***
13139411-C-A 10628897-C-A ***
13479678-A-AAGCC 11324002-A-AAGCC ***
13479698-A-C 11324022-A-C ***
13650588-GGAATGGAGAGGAAAC-G 11494912-GGAATGGAGAGGAAAC-G DYZ17 ***
13698409-C-T 11542733-C-T DYZ17 ***
13818275-C-A 11697569-C-A DYZ17 ***
28786069-C-T 26639922-C-T ***
28801642-A-G 26655495-A-G ***
10017764-C-T 10180155-C-T ***
10034836-C-A 10197227-C-A ***
13194037-T-C 11038361-T-C ***
13194045-T-C 11038369-T-C ***
13476347-C-T 11320671-C-T ***
13476348-C-A 11320672-C-A ***
13139528-CTCCGT-C 10629014-CTCCGT-C ***
13870029-C-A 11749323-C-A BY156382 DYZ17 ***
13870050-G-T 11749344-G-T FT328890 DYZ17 ***
13870079-T-C 11749373-T-C DYZ17 ***
28787483-A-G 26641336-A-G ***
13139392-C-T 10628878-C-T ***
27186567-TA-T 25040420-TA-T P1_g3 12×A***
13676549-A-T 11520873-A-T DYZ17 ***
13826220-C-T 11705514-C-T DYZ17 ***
13858065-A-G 11737359-A-G DYZ17 ***
9935508-T-G 10097899-T-G F18047 ***
9980310-T-C 10142701-T-C ***
28799008-G-A 26652861-G-A 5×GGAAT***
13870111-A-G 11749405-A-G DYZ17 ***
13138862-T-A 10628348-T-A ***
13194765-T-C 11039089-T-C ***
13704227-A-T 11548551-A-T DYZ17 ***
13810108-C-G 11689402-C-G DYZ17 ***
13832645-C-G 11711939-C-G DYZ17 ***
13842084-G-A 11721378-G-A DYZ17 ***
13858091-A-G 11737385-A-G FT20713 DYZ17 ***
13859460-G-A 11738754-G-A DYZ17 ***
13859480-G-A 11738774-G-A Z7402 DYZ17 ***
28785581-G-A 26639434-G-A ***
28785707-G-T 26639560-G-T ***
28787331-G-A 26641184-G-A ***
13453922-T-C,G 11298246-T-C,G ***
13686865-A-T 11531189-A-T DYZ17 ***
13870018-C-T 11749312-C-T DYZ17 ***
20230740-A-G 18068854-A-G P5_Dst ***
20230742-T-C 18068856-T-C P5_Dst ***
22236369-G-A 20074483-G-A DYZ19 ***
13474780-A-G 11319104-A-G ***
13808685-C-A 11687979-C-A DYZ17 10×AATGG***
24711226-A-T 22565079-A-T P3_b2 ***
13652091-T-A 11496415-T-A DYZ17 ***
22239076-C-A 20077190-C-A DYZ19 ***
9738704-A-T 9901095-A-T IR3_Prx ***
9738721-T-C 9901112-T-C FT20498 IR3_Prx ***
9738722-G-C 9901113-G-C FT20499 IR3_Prx ***
9738861-C-G 9901252-C-G FT104782 IR3_Prx ***
9746128-G-T 9908519-G-T ***
9746133-T-C 9908524-T-C ***
9746310-C-G 9908701-C-G ***
9746377-A-T 9908768-A-T ***
13826241-C-G 11705535-C-G DYZ17 ***
13826252-A-G 11705546-A-G DYZ17 ***
22223008-A-G 20061122-A-G DYZ19 ***
22223011-T-C 20061125-T-C DYZ19 ***
22223244-A-C 20061358-A-C DYZ19 ***
22223276-T-G 20061390-T-G DYZ19 ***
22223279-G-C 20061393-G-C DYZ19 ***
22228192-T-G 20066306-T-G DYZ19 ***
22232854-T-C 20070968-T-C DYZ19 ***
22233479-G-C 20071593-G-C DYZ19 ***
22233539-G-A 20071653-G-A BY5951 DYZ19 ***
22235425-T-C 20073539-T-C BY213624 DYZ19 ***
22235569-T-C 20073683-T-C DYZ19 ***
22236968-C-G 20075082-C-G DYZ19 ***
24034542-G-C 21888395-G-C ***
27341589-T-G 25195442-T-G P1_g3 ***
13139416-T-A 10628902-T-A ***
13851931-C-G 11731225-C-G DYZ17 ***
28787398-C-G 26641251-C-G ***
9738675-C-A 9901066-C-A IR3_Prx ***
9739526-C-A 9901917-C-A IR3_Prx ***
9745835-A-G 9908226-A-G ***
9746293-G-A 9908684-G-A ***
9746383-G-A 9908774-G-A ***
9749638-A-G 9912029-A-G ***
10005901-T-G 10168292-T-G ***
13698412-T-G 11542736-T-G S5301FGC41676 DYZ17 ***
20206644-TA-T 18044758-TA-T P5_Dst 11×A***
22222999-G-A 20061113-G-A DYZ19 ***
22223834-A-G 20061948-A-G DYZ19 ***
22227148-A-T 20065262-A-T DYZ19 ***
22227149-C-G 20065263-C-G DYZ19 ***
22234175-G-C 20072289-G-C BY23237 DYZ19 ***
22235465-A-C 20073579-A-C DYZ19 ***
23697408-C-T 21535522-C-T ZS1895 ***
24034788-T-A 21888641-T-A ***
24555364-G-A 22409217-G-A P3_t2 ***
27168017-G-C 25021870-G-C P1_g3 ***
27254982-A-G 25108835-A-G P1_g3 ***
27305664-A-G 25159517-A-G P1_g3 ***
27774409-G-A 25628262-G-A P1_Y2 ***
27774431-C-A 25628284-C-A P1_Y2 ***
27774528-C-G 25628381-C-G P1_Y2 ***
28359912-T-C 26213765-T-C P1_gr2 ***
13801215-A-T 11680509-A-T DYZ17 ***
13858094-C-T 11737388-C-T DYZ17 5×GGAAT***
13862166-GAACTT-A,G 11741460-GAACTT-A,G DYZ17 ***
10005893-T-G 10168284-T-G ***
10005900-A-G 10168291-A-G ***
28800299-A-G 26654152-A-G ***
13137899-G-C 10627385-G-C ***
28786601-A-G 26640454-A-G ***
13456009-CATTCGTGTTG-C 11300333-CATTCGTGTTG-C ***
10015286-G-A 10177677-G-A ***
28801664-A-G 26655517-A-G ***
13813555-T-G 11692849-T-G DYZ17 ***
9746123-A-G 9908514-A-G ***
9746124-T-G 9908515-T-G ***
9746126-A-G 9908517-A-G ***
13866652-A-C 11745946-A-C DYZ17 ***
13865744-G-T 11745038-G-T DYZ17 ***
13859814-A-G 11739108-A-G DYZ17 ***
13860144-T-A,G 11739438-T-A,G DYZ17 ***
13859323-C-T 11738617-C-T DYZ17 ***
13833496-C-G 11712790-C-G DYZ17 ***
13833634-C-A 11712928-C-A DYZ17 ***
13142038-C-T 10631524-C-T ***
13682910-G-A 11527234-G-A DYZ17 ***
13817190-A-C 11696484-A-C DYZ17 ***
28787393-T-G 26641246-T-G ***
13447541-T-C 11291865-T-C ***
13663786-A-G 11508110-A-G DYZ17 ***
13813683-T-A 11692977-T-A DYZ17 ***
13652070-G-T 11496394-G-T DYZ17 ***
19096748-G-GCA 16984868-G-GCA 13×CA***
19739340-AAAC-A 17627460-AAAC-A P5_Prx 13×AAC***
13652075-A-C 11496399-A-C DYZ17 ***
13652086-T-C 11496410-T-C DYZ17 ***
13652208-G-A 11496532-G-A DYZ17 ***
13839933-C-A 11719227-C-A FT391867 DYZ17 ***
13839935-T-G 11719229-T-G DYZ17 ***
28785058-A-T 26638911-A-T ***
9764343-A-AAAGGAAGG 9926734-A-AAAGGAAGG 10×AAGG***
9739558-T-C 9901949-T-C IR3_Prx ***
9745756-A-G 9908147-A-G Z12237 A2324 ***
13194062-A-C 11038386-A-C ***
13454994-G-C 11299318-G-C Z7241 ***
9739551-A-G 9901942-A-G IR3_Prx ***
9739606-G-A 9901997-G-A IR3_Prx ***
27421234-A-G 25275087-A-G P1_g3 ***
13865769-GGAATGGAATC-G 11745063-GGAATGGAATC-G DYZ17 ***
26186969-G-GA 24040822-G-GA P1_Y1 10×A***
9935460-C-T 10097851-C-T ***
22237729-T-C 20075843-T-C A3945 DYZ19 ***
9746134-T-A 9908525-T-A ***
24027713-T-A 21881566-T-A ***
24030162-A-G 21884015-A-G ***
24544000-G-A 22397853-G-A P3_t2 ***
25651052-T-G 23504905-T-G BY2379 P1_b3 ***
27171252-C-G 25025105-C-G P1_g3 ***
27190759-C-T 25044612-C-T P1_g3 ***
27316407-G-GT 25170260-G-GT P1_g3 9×T***
27339765-T-C 25193618-T-C P1_g3 ***
27427228-A-C 25281081-A-C BY2512 P1_g3 ***
24757897-C-T 22611750-C-T P3_b2 ***
6166757-T-C 6298716-T-C FT359845 IR3_Dst ***
22421537-A-T 20259651-A-T DYZ19 ***
13817343-T-G 11696637-T-G DYZ17 ***
22236342-G-A 20074456-G-A DYZ19 ***
13476946-C-A 11321270-C-A ***
13809711-G-A 11689005-G-A DYZ17 ***
27087604-A-ATGCC 24941457-A-ATGCC P1_r4 ***
13459477-T-C 11303801-T-C ***
13138853-T-C 10628339-T-C ***
13454964-A-C 11299288-A-C ***
13869955-G-C 11749249-G-C DYZ17 ***
13140530-C-T 10630016-C-T ***
27710499-A-T 25564352-A-T P1_Y2 ***
13833375-TG-A,AG 11712669-TG-A,AG DYZ17 ***
13838421-A-C,G 11717715-A-C,G DYZ17 9×GAATG***
27232111-TTTTC-CTTTC,T 25085964-TTTTC-CTTTC,T P1_g3 18×TTTC***
13832600-C-A,G 11711894-C-A,G DYZ17 ***
13474008-C-A,G 11318332-C-A,G ***
13686897-C-CGAATG,G 11531221-C-CGAATG,G DYZ17 ***
6293503-G-C 6425462-G-C BY59582 IR3_Dst ***
9334014-G-A 9496405-G-A ***
9517902-C-T 9680293-C-T ***
10017763-C-T 10180154-C-T ***
13138188-C-T 10627674-C-T ***
13194150-T-C 11038474-T-C ***
13194155-T-C 11038479-T-C ***
13447543-C-G 11291867-C-G ***
13454965-A-C 11299289-A-C ***
13459457-T-C 11303781-T-C ***
13485757-C-G 11330081-C-G ***
13600006-T-G 11444330-T-G ***
13650648-C-G 11494972-C-G DYZ17 ***
13817767-C-G 11697061-C-G DYZ17 ***
13833505-T-A 11712799-T-A DYZ17 ***
13851523-CTTTGA-C 11730817-CTTTGA-C DYZ17 ***
13852997-T-C 11732291-T-C DYZ17 ***
13858031-G-A 11737325-G-A DYZ17 ***
13858071-G-T 11737365-G-T DYZ17 ***
13858089-T-A 11737383-T-A DYZ17 ***
13859377-ATGACATGGAG-A 11738671-ATGACATGGAG-A DYZ17 ***
20324419-C-T 18162533-C-T P5_Dst ***
22243821-C-T 20081935-C-T DYZ19 ***
22249707-G-T 20087821-G-T DYZ19 ***
22291801-G-C 20129915-G-C DYZ19 ***
22339168-C-T 20177282-C-T DYZ19 ***
22339171-A-G 20177285-A-G DYZ19 ***
22339501-C-T 20177615-C-T DYZ19 ***
22339502-G-T 20177616-G-T DYZ19 ***
22339532-A-G 20177646-A-G DYZ19 ***
22339538-G-T 20177652-G-T DYZ19 ***
22503526-C-T 20341640-C-T DYZ19 ***
24199704-C-T 22053557-C-T P3_b1 ***
24230931-C-T 22084784-C-T P3_b1 ***
25126653-TC-T 22980506-TC-T g1 ***
25218554-G-A 23072407-G-A P2_r1 ***
25219594-G-A 23073447-G-A P2_r1 ***
25323828-T-C 23177681-T-C P2_r1 ***
25493404-C-T 23347257-C-T P2_r2 ***
25654576-G-A 23508429-G-A P1_b3 ***
25678604-G-C 23532457-G-C P1_b3 ***
25967133-C-T 23820986-C-T ZS1906 P1_Y1 ***
26603830-T-A 24457683-T-A P1_g2 ***
26693090-T-A 24546943-T-A P1_g2 ***
26990547-A-G 24844400-A-G P1_r4 ***
27226248-C-T 25080101-C-T P1_g3 ***
27228700-T-C 25082553-T-C P1_g3 ***
27301237-C-G 25155090-C-G P1_g3 ***
27372649-C-T 25226502-C-T P1_g3 ***
27373283-G-A 25227136-G-A P1_g3 ***
27760840-C-A 25614693-C-A P1_Y2 ***
27775445-A-AT 25629298-A-AT P1_Y2 10×T***
28800211-G-T 26654064-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.