Tree Position

A0-T-YP2191 > P305 > L413/PF1409/V31 > M168/PF1416 > P143 > M89/PF2746 > F1329/M3658 > F929 > IJK > IJ > J > J1 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
238170
9818299-T-C 9980690-T-C ZS4396 YY+
19074496-C-T 16962616-C-T ZS8970 YY+
7879209-GT-G 8011168-GT-G +
7870585-C-A 8002544-C-A ZS8959 YY+
7842079-C-G 7974038-C-G PF7264 YY+
7661055-G-A 7793014-G-A ZS4383 YY+
7570822-CT-C 7702781-CT-C +
7323317-T-G 7455276-T-G ZS4380 YY+
7106611-T-C 7238570-T-C ZS4379 YY+
7055950-G-T 7187909-G-T ZS4378 YY+
6931939-A-T 7063898-A-T ZS4376 YY+
18960272-A-T 16848392-A-T ZS4424 YY+
4872897-C-G 5004856-C-G ZS4374 +
2690314-G-A 2822273-G-A ZS8957 YY+
19003884-T-C 16892004-T-C ZS4425 YY+
19061717-G-A 16949837-G-A ZS4426 YY+
19092460-T-C 16980580-T-C ZS4427 YY+
8313726-C-T 8445685-C-T ZS4388 YY+
21971710-G-A 19809824-G-A ZS8971 YY+
22478548-G-C 20316662-G-C ZS4441 DYZ19 +
22432822-G-A 20270936-G-A ZS8974 DYZ19 +
22345147-G-T 20183261-G-T ZS4439 DYZ19 +
17031364-G-A 14919484-G-A ZS4413 YY+
22277567-T-A 20115681-T-A ZS8973 DYZ19 +
22231547-T-A 20069661-T-A ZS8972 DYZ19 +
22761747-C-T 20599861-C-T S7323CTS10758 YY+
19220021-CAG-C 17108141-CAG-C +
21608099-C-T 19446213-C-T ZS4431 YY+
21302278-T-C 19140392-T-C ZS4430 YY+
18642438-G-T 16530558-G-T ZS4422 YY+
19450177-G-C 17338297-G-C ZS4429 YY+
7683151-G-A 7815110-G-A ZS8958 YY+
19443777-C-T 17331897-C-T ZS4428 YY+
7912668-A-G 8044627-A-G ZS4384 YY+
8537175-C-A 8669134-C-A ZS8960 YY+
22792144-C-T 20630258-C-T YP3636 ZS4443 FGC27747 YY+
15441561-C-T 13329681-C-T ZS4409 YY+
14415669-CTATA-C 12294966-CTATA-C +
14541987-G-A 12430188-G-A ZS8963 YY+
14584346-C-G 12472546-C-G ZS4404 YY+
14710271-G-T 12598338-G-T ZS4405 YY+
15050472-G-A 12938563-G-A ZS4406 YY+
15240103-A-C 13128189-A-C ZS4407 Y+
15560456-T-A 13448576-T-A ZS8964 YY+
14227519-T-C 12106813-T-C ZS7752 YY+
15933839-C-T 13821959-C-T ZS4410 YY+
16058672-G-T 13946792-G-T ZS4411 YY+
17188923-G-C 15077043-G-C ZS4414 YY+
16301468-G-T 14189588-G-T ZS8966 YY+
16418738-T-A 14306858-T-A ZS8967 YY+
16581869-T-C 14469989-T-C ZS4412 YY+
14229460-C-T 12108754-C-T ZS4403 YY+
14052631-G-A 11931925-G-A ZS4402 YY+
8638838-A-G 8770797-A-G ZS4391 YY+
18072155-C-T 15960275-C-T ZS4419 YY+
8672324-C-A 8804283-C-A ZS4392 YY+
8808041-A-C 8940000-A-C ZS4393 YY+
8834145-C-G 8966104-C-G ZS4394 YY+
8872074-G-A 9004033-G-A ZS8961 Y+
18648663-A-G 16536783-A-G ZS7760 YY+
18124937-G-A 16013057-G-A ZS8969 YY+
9447594-T-C 9609985-T-C ZS8962 YY+
17421259-T-C 15309379-T-C ZS4415 YY+
9814475-AC-A 9976866-AC-A +
13384581-A-C 11228905-A-C ZS4398 +
13685552-A-T 11529876-A-T ZS4401 +
17790351-G-T 15678471-G-T ZS4418 YY+
17719223-AG-A 15607343-AG-A +
17656115-C-T 15544235-C-T ZS4417 YY+
22762640-C-T 20600754-C-T ZS4442 YY+
22300440-T-C 20138554-T-C ZS4437 DYZ19 +
22843491-A-G 20681605-A-G ZS8976 YY+
23140408-C-T 20978522-C-T ZS4444 YY+
15707766-G-A 13595886-G-A ZS8965 YY+
24412283-G-A 22266136-G-A ZS4451 Y+
24271832-C-G 22125685-C-G ZS4450 P3_b1 +
23778688-T-A 21616802-T-A ZS8982 Y+
22863347-C-T 20701461-C-T PF7263 YY+
23650833-G-A 21488947-G-A ZS8981 Y+
23590762-A-G 21428876-A-G ZS8980 YY+
23554612-A-T 21392726-A-T ZS5136 YY+
23554587-T-C 21392701-T-C ZS4447 YY+
23554573-G-A 21392687-G-A ZS4446 YY+
23379428-C-T 21217542-C-T ZS8979 YY+
23315674-T-A 21153788-T-A ZS8978 YY+
23241391-A-G 21079505-A-G ZS4445 Y+
16932562-T-G 14820682-T-G ZS8968 YY+
23013416-T-C 20851530-T-C ZS8977 YY+
23554593-G-A 21392707-G-A **
5190993-T-A 5322952-T-A Z37031 **
13859635-AC-A 11738929-AC-A **
20244301-TAAA-T 18082415-TAAA-T P5_Dst **
23554617-C-G 21392731-C-G ZS10031 **
23554619-G-A 21392733-G-A BY45521 **
22223904-C-A 20062018-C-A DYZ19 **
23554592-T-C 21392706-T-C **
16490283-T-C 14378403-T-C CTS5814 **
22449031-C-G 20287145-C-G DYZ19 **
22512292-G-T 20350406-G-T Y78085 DYZ19 **
3329188-T-G 3461147-T-G BY57558 **
22289916-C-A 20128030-C-A DYZ19 **
26995764-G-A 24849617-G-A FGC49201 P1_r4 **
18872198-T-TTCTTTCTTTCTA 16760318-T-TTCTTTCTTTCTA **
7140242-A-C 7272201-A-C ZS7743 **
23061583-G-A 20899697-G-A ZS7766 **
25104612-G-A 22958465-G-A g1 ***
25136543-A-G 22990396-A-G g1 ***
24946828-A-G 22800681-A-G g1 ***
24947519-T-C 22801372-T-C g1 ***
25074107-A-G 22927960-A-G g1 ***
25049440-G-T 22903293-G-T g1 ***
25090593-C-T 22944446-C-T g1 ***
18272066-A-G 16160186-A-G ZS5640 P6_Prx ***
25077268-T-C 22931121-T-C g1 ***
25023379-C-T 22877232-C-T g1 ***
25032262-T-C 22886115-T-C g1 ***
25143200-G-A 22997053-G-A g1 ***
22358605-A-T 20196719-A-T DYZ19 ***
25170329-T-C 23024182-T-C g1 ***
17988934-G-T 15877054-G-T FGC38582 P7_Prx ***
25575555-AGCAGGCCAG-A 23429408-AGCAGGCCAG-A P1_gr1 ***
26955796-C-T 24809649-C-T P1_r3 ***
26945903-A-T 24799756-A-T P1_r3 ***
26931584-G-A 24785437-G-A P1_r3 ***
26878777-C-T 24732630-C-T P1_r3 ***
26314165-C-T 24168018-C-T P1_Y1 ***
26264894-C-T 24118747-C-T P1_Y1 ***
26193455-G-A 24047308-G-A BY25080 P1_Y1 ***
26083819-T-A 23937672-T-A P1_Y1 ***
25998267-C-G 23852120-C-G BY2430 P1_Y1 ***
25421244-C-T 23275097-C-T P2_r2 ***
25145299-G-A 22999152-G-A g1 ***
25404035-A-G 23257888-A-G P2_r2 ***
25386128-G-T 23239981-G-T BY2372 P2_r2 ***
25381350-G-T 23235203-G-T P2_r2 ***
25341411-C-T 23195264-C-T P2_r1 ***
25324075-T-C 23177928-T-C BY25884 P2_r1 ***
25304937-C-A 23158790-C-A P2_r1 ***
25297047-T-C 23150900-T-C P2_r1 ***
25180195-T-A 23034048-T-A g1 ***
24902958-C-T 22756811-C-T ZS2180 g1 ***
25159157-G-A 23013010-G-A g1 ***
24914586-G-T 22768439-G-T g1 ***
24223006-T-G 22076859-T-G P3_b1 ***
24655692-A-C 22509545-A-C FGCLR177 P3_b2 ***
22248912-G-A 20087026-G-A DYZ19 ***
20821939-AGTGTGTGT-A 18660053-AGTGTGTGT-A P4_Gap 16×GT***
22459750-G-A 20297864-G-A BY52782 DYZ19 ***
22453822-G-T 20291936-G-T DYZ19 ***
22219524-T-A 20057638-T-A DYZ19 ***
22222940-C-A 20061054-C-A DYZ19 ***
22243345-G-T 20081459-G-T ZS7737 DYZ19 ***
22248865-C-G 20086979-C-G DYZ19 ***
22251022-G-C 20089136-G-C DYZ19 ***
20727463-TATAAAAATTTCTCAATAACACCA-T 18565577-TATAAAAATTTCTCAATAACACCA-T P4_Prx ***
22253014-G-A 20091128-G-A DYZ19 ***
22265726-A-C 20103840-A-C DYZ19 ***
22433738-C-G 20271852-C-G DYZ19 ***
22289385-G-A,C 20127499-G-A,C DYZ19 ***
22291608-T-C 20129722-T-C DYZ19 ***
22309630-A-T 20147744-A-T DYZ19 ***
22310688-T-A 20148802-T-A DYZ19 ***
22343964-T-G 20182078-T-G DYZ19 ***
20735386-C-A 18573500-C-A P4_Prx ***
20668810-T-C 18506924-T-C P4_Prx ***
24636248-A-ATGGAGTGTTGCAACTGTTGGATG 22490101-A-ATGGAGTGTTGCAACTGTTGGATG P3_t2 9×TG***
24112452-C-G 21966305-C-G P3_b1 ***
22509375-T-C 20347489-T-C BY49347 DYZ19 ***
24281042-T-A 22134895-T-A P3_t1 ***
22498592-G-T 20336706-G-T DYZ19 ***
24236910-A-G 22090763-A-G P3_b1 ***
22362842-T-G 20200956-T-G DYZ19 ***
24185296-T-C 22039149-T-C P3_b1 ***
24138627-A-C 21992480-A-C P3_b1 ***
23676291-G-A 21514405-G-A ***
20031793-T-A 17919913-T-A ZS4509 P5_Prx ***
22464415-C-T 20302529-C-T BY23034 DYZ19 ***
19073919-CATACACACACACACATTAT-C,CATACACACACAC 16962039-CATACACACACACACATTAT-C,CATACACACACAC ***
22461435-A-G 20299549-A-G A4315 DYZ19 ***
22461409-T-A 20299523-T-A A4313 DYZ19 ***
19592122-G-C 17480242-G-C P5_Prx ***
19832733-A-C 17720853-A-C P5_Prx ***
19841941-G-A 17730061-G-A P5_Prx ***
19935469-ATTT-A 17823589-ATTT-A P5_Prx ***
23665747-G-A 21503861-G-A ***
4114451-CAG-C 4246410-CAG-C 19×AG***
16109768-T-C 13997888-T-C P8_Prx ***
9303347-C-T 9465738-C-T ***
9334568-C-T 9496959-C-T ***
13833374-AT-A,AA 11712668-AT-A,AA ***
22366410-T-C 20204524-T-C A16684 DYZ19 ***
22244643-C-T 20082757-C-T BY22436 DYZ19 ***
13712439-C-A 11556763-C-A ***
13433622-T-C 11277946-T-C ***
13489620-C-CA 11333944-C-CA ***
22343882-C-T 20181996-C-T DYZ19 ***
9981449-C-G 10143840-C-G ***
22451242-T-C 20289356-T-C DYZ19 ***
23899752-T-G 21737866-T-G ***
7554786-AACACAC-A 7686745-AACACAC-A 22×AC***
22477329-G-C 20315443-G-C BY25204 DYZ19 ***
9329863-C-A 9492254-C-A ZS2105 ***
13869643-C-T 11748937-C-T ***
13325752-C-T 11170076-C-T ***
23898798-C-A 21736912-C-A ***
23898814-G-A 21736928-G-A ***
13294509-GTT-G 11138833-GTT-G 12×T***
13740173-T-C 11584497-T-C ***
26252613-A-T 24106466-A-T P1_Y1 ***
13141127-C-CGGGTT 10630613-C-CGGGTT ***
22460582-A-T 20298696-A-T FGC8287 DYZ19 ***
22244056-G-C 20082170-G-C ZS4702 DYZ19 ***
25108897-A-G 22962750-A-G FGC13742Z18598 Z43281 g1 ***
22291858-G-A 20129972-G-A DYZ19 ***
22291877-T-G 20129991-T-G DYZ19 ***
18083146-CTGTG-C 15971266-CTGTG-C 11×TG***
22310590-A-C 20148704-A-C DYZ19 ***
22504086-T-A 20342200-T-A DYZ19 ***
13716211-T-A 11560535-T-A ***
21549943-CTT-C 19388057-CTT-C 13×T***
13833376-G-A 11712670-G-A BY90932 ***
13489540-G-A 11333864-G-A ***
13869594-C-G 11748888-C-G ***
25777840-C-CAAT 23631693-C-CAAT P1_b3 14×AAT***
9181096-TATATAC-T 9343487-TATATAC-T ***
10038840-G-A 10201231-G-A ***
13694056-T-C 11538380-T-C ***
13696161-A-C 11540485-A-C ***
13696168-A-T 11540492-A-T ***
13801138-G-GTGCTC 11680432-G-GTGCTC ***
24807641-A-G 22661494-A-G BY2292 P3_b2 ***
28791411-T-C 26645264-T-C ***
28792869-T-G 26646722-T-G ***
22509954-T-A 20348068-T-A DYZ19 ***
13433618-T-A 11277942-T-A ***
22366454-A-G 20204568-A-G DYZ19 ***
13446552-T-C 11290876-T-C ***
13458439-A-T 11302763-A-T ***
22277862-G-A 20115976-G-A FGC22015 DYZ19 ***
22366282-A-C 20204396-A-C DYZ19 ***
13325816-G-A 11170140-G-A ***
13846434-G-T 11725728-G-T ***
23899733-T-C 21737847-T-C ***
23899738-G-A 21737852-G-A ***
28814439-A-T 26668292-A-T ***
28814440-A-G 26668293-A-G ***
22510068-T-G 20348182-T-G DYZ19 ***
13437662-C-T 11281986-C-T ***
22258730-T-C 20096844-T-C DYZ19 ***
22277829-C-A 20115943-C-A FGC22014 DYZ19 ***
13325778-T-A 11170102-T-A ***
9952390-CCAGA-C 10114781-CCAGA-C ***
28807293-G-C 26661146-G-C BY157251 ***
13722147-T-A 11566471-T-A ***
9292541-T-C 9454932-T-C ***
9197624-G-A 9360015-G-A ***
9199714-A-C 9362105-A-C ***
22455601-T-A 20293715-T-A E615 DYZ19 ***
26280518-G-A 24134371-G-A P1_Y1 ***
19785950-G-A 17674070-G-A P5_Prx ***
24600442-C-CTT,T 22454295-C-CTT,T P3_t2 18×TCTT***
9997665-T-C 10160056-T-C ***
9997681-C-CTTT 10160072-C-CTTT ***
13137353-A-ATTCTG 10626839-A-ATTCTG ***
22305394-G-C 20143508-G-C DYZ19 ***
25275098-A-AT 23128951-A-AT P2_r1 12×T***
9214986-C-T 9377377-C-T ***
28795544-G-C 26649397-G-C ***
7485758-G-A 7617717-G-A IR1_L ***
22241070-G-A 20079184-G-A DYZ19 ***
25265708-A-AACT 23119561-A-AACT P2_r1 9×ACT***
19879019-C-T 17767139-C-T P5_Prx ***
13698173-G-A 11542497-G-A Z41079 ***
9961051-T-A,G 10123442-T-A,G ***
13693147-TACGAATGGAATGGAA-T,TTCGAATGGAATGGAA 11537471-TACGAATGGAATGGAA-T,TTCGAATGGAATGGAA ***
6206488-A-G 6338447-A-G IR3_Dst ***
7479179-C-T 7611138-C-T FGC38646 IR1_L ***
9195194-A-G 9357585-A-G ***
9297878-A-G 9460269-A-G ***
9356218-G-T 9518609-G-T ***
9361864-C-T 9524255-C-T ***
13445646-T-C 11289970-T-C ***
13699524-T-G 11543848-T-G ***
13704372-TGGAAC-T,TAGAAT 11548696-TGGAAC-T,TAGAAT ***
13714498-C-A 11558822-C-A ***
22287058-C-T 20125172-C-T DYZ19 ***
13702448-A-G 11546772-A-G ***
22305383-C-T 20143497-C-T DYZ19 ***
19956731-T-C 17844851-T-C P5_Prx ***
22361637-T-G 20199751-T-G DYZ19 ***
22451228-C-T 20289342-C-T DYZ19 ***
13702433-C-T 11546757-C-T ***
22452093-A-G 20290207-A-G DYZ19 ***
28807304-T-A 26661157-T-A ***
24953282-G-A 22807135-G-A g1 ***
9955401-T-G 10117792-T-G ***
24807644-C-T 22661497-C-T BY24928 P3_b2 ***
6152672-C-A 6284631-C-A FGC37597 IR3_Dst ***
9330894-A-C 9493285-A-C ***
18272190-C-T 16160310-C-T P6_Prx ***
19751232-G-A 17639352-G-A FGC13886 Z18276 P5_Prx ***
19794113-T-A 17682233-T-A ZS3780 P5_Prx ***
19896460-T-C 17784580-T-C BY1619 P5_Prx ***
20647670-T-A 18485784-T-A ZS5327 P4_Prx ***
58978571-G-A 56832424-G-A ***
20758392-T-G 18596506-T-G BY1692 P4_Prx ***
22251110-G-A 20089224-G-A FGC75268 DYZ19 ***
22291503-G-T 20129617-G-T DYZ19 ***
22291696-G-C 20129810-G-C BY3720 DYZ19 ***
22359924-T-C 20198038-T-C DYZ19 ***
25116612-C-A 22970465-C-A ZS2195 g1 ***
25155089-C-T 23008942-C-T HU459 g1 ***
25848162-G-C 23702015-G-C FGC37537 P1_b3 ***
25870095-G-T 23723948-G-T P1_Y1 ***
26075945-G-A 23929798-G-A BY2443 P1_Y1 ***
26172782-A-G 24026635-A-G P1_Y1 ***
25204475-A-ATTAT 23058328-A-ATTAT g1 5×TTAT***
28813906-T-G 26667759-T-G BY152192 ***
13323852-C-CTG 11168176-C-CTG ***
28796039-G-C 26649892-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2381701080139678486707941758
Used in age calculations1080139678486707941758
Counts of SNPs6969
Variant counts last updated 2018-07-08 20:33:34.



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