Mangan

FTDNA: N112446, BigY2: N112446
MDKA Birth: Ireland 1808

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > S841 > FGC13898 > S856 > L1308

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRFTDNA
N112446		BigY2
N112446
hg19:Y:20212487-G-C hg38:Y:18050601-G-C P5_Dst A+
hg19:Y:27793014-A-C hg38:Y:25646867-A-C P1_Y2 A+
hg19:Y:6167961-T-C hg38:Y:6299920-T-C IR3_Dst ***A*
hg19:Y:16121458-C-T hg38:Y:14009578-C-T P8_Prx ***A*
hg19:Y:20021600-A-G hg38:Y:17909720-A-G P5_Prx ***A*
hg19:Y:22291523-G-C hg38:Y:20129637-G-C DYZ19 ***A*
hg19:Y:8776185-C-T hg38:Y:8908144-C-T FGC46373 YY++
hg19:Y:13666703-A-G hg38:Y:11511027-A-G FGC46374 DYZ17 ++
hg19:Y:14555733-TAAAC-T hg38:Y:12443934-TAAAC-T ++
hg19:Y:16703061-T-C hg38:Y:14591181-T-C FGC46376 Y**+
hg19:Y:16984368-G-C hg38:Y:14872488-G-C FGC46377 YY++
hg19:Y:17165572-C-T hg38:Y:15053692-C-T FGC46378 YY++
hg19:Y:18665877-G-T hg38:Y:16553997-G-T BY122960 YY++
hg19:Y:19010026-GCAGCTTTGC-G hg38:Y:16898146-GCAGCTTTGC-G ++
hg19:Y:22021055-G-A hg38:Y:19859169-G-A FGC46379 YY++
hg19:Y:23995963-G-A hg38:Y:21849816-G-A FGC46380 ++
hg19:Y:24478386-C-T hg38:Y:22332239-C-T FGC46381 Y++
hg19:Y:19405569-C-CTGAGAT hg38:Y:17293689-C-CTGAGAT S27900 7×TGAGAT****
hg19:Y:22230337-C-T hg38:Y:20068451-C-T DYZ19 ****
hg19:Y:13141271-T-G hg38:Y:10630757-T-G **
hg19:Y:5426389-TC-T hg38:Y:5558348-TC-T **
hg19:Y:14683488-A-C hg38:Y:12571554-A-C CTS3143 **
hg19:Y:7122995-G-C hg38:Y:7254954-G-C CTS981 **
hg19:Y:15688336-G-A hg38:Y:13576456-G-A Z2274 CTS4514 **
hg19:Y:3079561-T-A hg38:Y:3211520-T-A 18×A**
hg19:Y:7110944-C-A hg38:Y:7242903-C-A **
hg19:Y:3363165-TTTA-T hg38:Y:3495124-TTTA-T 5×TTA**
hg19:Y:14505333-C-G hg38:Y:12393538-C-G S264/Z156Z8160 AM01887 **
hg19:Y:2814839-A-G hg38:Y:2946798-A-G **
hg19:Y:14080035-G-GAT hg38:Y:11959329-G-GAT 29×AT**
hg19:Y:14926355-T-A hg38:Y:12814420-T-A **
hg19:Y:25995548-G-A hg38:Y:23849401-G-A P1_Y1 **
hg19:Y:15276576-C-A hg38:Y:13164665-C-A ****
hg19:Y:15688344-T-C hg38:Y:13576464-T-C PF6362 **
hg19:Y:17568276-C-A hg38:Y:15456396-C-A ****
hg19:Y:22255151-G-C hg38:Y:20093265-G-C DYZ19 *****
hg19:Y:22288144-C-T hg38:Y:20126258-C-T DYZ19 *****
hg19:Y:22425262-G-A hg38:Y:20263376-G-A DYZ19 *****
hg19:Y:5563117-TACAC-T hg38:Y:5695076-TACAC-T 16×AC**
hg19:Y:21320129-C-A hg38:Y:19158243-C-A **
hg19:Y:7197456-A-G hg38:Y:7329415-A-G **
hg38:Y:11025074-A-C **
hg38:Y:11025077-G-T **
hg38:Y:11025095-C-G **
hg38:Y:11025107-T-A **
hg38:Y:11025111-T-C **
hg38:Y:11025127-A-C **
hg19:Y:22842300-C-A hg38:Y:20680414-C-A **
hg19:Y:9075301-T-G hg38:Y:9237692-T-G **
hg38:Y:10663427-CCT-C **
hg38:Y:10663435-C-T **
hg38:Y:11009196-A-T **
hg19:Y:17285048-A-C hg38:Y:15173168-A-C **
hg19:Y:16931972-C-A hg38:Y:14820092-C-A **
hg19:Y:4999855-C-A hg38:Y:5131814-C-A **
hg19:Y:7990596-C-A hg38:Y:8122555-C-A **
hg38:Y:10961461-CT-C **
hg38:Y:10978723-C-A **
hg19:Y:6992553-C-T hg38:Y:7124512-C-T 17×T**
hg38:Y:10989495-G-T **
hg19:Y:17362872-C-A hg38:Y:15250992-C-A **
hg38:Y:10781293-C-A **
hg19:Y:3274236-C-A hg38:Y:3406195-C-A **
hg19:Y:22263605-C-A hg38:Y:20101719-C-A DYZ19 **
hg19:Y:3550568-A-C hg38:Y:3682527-A-C **
hg38:Y:11019422-T-A **
hg38:Y:11019426-C-G **
hg19:Y:24595385-A-C hg38:Y:22449238-A-C P3_t2 **
hg19:Y:27507474-G-T hg38:Y:25361327-G-T P1_Y2 **
hg38:Y:10925005-T-C **
hg19:Y:13480767-T-A hg38:Y:11325091-T-A **
hg19:Y:13480815-A-T hg38:Y:11325139-A-T **
hg19:Y:13480836-G-A hg38:Y:11325160-G-A **
hg19:Y:7368888-C-A hg38:Y:7500847-C-A Y61959 **
hg19:Y:14065526-C-A hg38:Y:11944820-C-A **
hg38:Y:10943702-A-C **
hg19:Y:7939310-C-CAA hg38:Y:8071269-C-CAA 14×A**
hg38:Y:10931142-C-A **
hg38:Y:10792069-C-A **
hg38:Y:10797773-T-A **
hg38:Y:11038160-C-G **
hg38:Y:11038165-C-CACTAT **
hg19:Y:5796186-C-A hg38:Y:5928145-C-A **
hg38:Y:11025086-TCAACC-T **
hg38:Y:11669172-C-A DYZ17 **
hg19:Y:28798583-C-T hg38:Y:26652436-C-T **
hg19:Y:6096371-C-A hg38:Y:6228330-C-A **
hg38:Y:10949534-ACTCCTCTCCACT-A **
hg38:Y:10949550-CTCA-C **
hg19:Y:22210487-C-A hg38:Y:20048601-C-A **
hg19:Y:17104014-G-T hg38:Y:14992134-G-T **
hg19:Y:28726600-C-A hg38:Y:26580453-C-A **
hg38:Y:10760290-CGAATG-C **
hg19:Y:15986635-G-A hg38:Y:13874755-G-A **
hg19:Y:3833473-C-T hg38:Y:3965432-C-T **
hg38:Y:10663449-C-G **
hg19:Y:7866058-C-A hg38:Y:7998017-C-A **
hg19:Y:28747697-C-G hg38:Y:26601550-C-G **
hg19:Y:23252741-C-A hg38:Y:21090855-C-A **
hg19:Y:3079553-A-C hg38:Y:3211512-A-C **
hg19:Y:7281008-G-C hg38:Y:7412967-G-C **
hg19:Y:15370813-C-A hg38:Y:13258933-C-A **
hg38:Y:10900873-C-A **
hg38:Y:10961456-CA-C **
hg38:Y:10961464-A-AC **
hg19:Y:19510292-GTA-G hg38:Y:17398412-GTA-G **
hg19:Y:15399419-G-GAA hg38:Y:13287539-G-GAA 15×A**
hg19:Y:15440020-T-A hg38:Y:13328140-T-A **
hg38:Y:10925000-T-A FT436732 **
hg19:Y:3834512-C-A hg38:Y:3966471-C-A **
hg38:Y:10777053-C-A **
hg19:Y:18439257-T-TA hg38:Y:16327377-T-TA P6_Dst **
hg38:Y:10846517-A-G FT433877 **
hg19:Y:7455908-C-A hg38:Y:7587867-C-A IR1_L **
hg19:Y:17297353-C-A hg38:Y:15185473-C-A **
hg19:Y:15400199-C-A hg38:Y:13288319-C-A **
hg38:Y:10992321-A-ATTACGTTCGG **
hg19:Y:28485834-C-A hg38:Y:26339687-C-A **
hg38:Y2:7823-C-A **
hg19:Y:14467765-C-CA hg38:Y:12347034-C-CA 8×A**
hg19:Y:28560946-C-A hg38:Y:26414799-C-A **
hg19:Y:23198383-T-G hg38:Y:21036497-T-G **
hg19:Y:7360691-C-A hg38:Y:7492650-C-A **
hg38:Y:10949582-C-CAAATCCAAAG **
hg19:Y:14559394-C-A hg38:Y:12447595-C-A **
hg19:Y:19510298-TTA-T hg38:Y:17398418-TTA-T **
hg38:Y:10962647-C-A **
hg38:Y:10881721-G-T **
hg19:Y:28499418-C-A hg38:Y:26353271-C-A **
hg19:Y:7301520-G-T hg38:Y:7433479-G-T **
hg19:Y:9618363-G-T hg38:Y:9780754-G-T IR3_Prx **
hg38:Y:10814316-T-A **
hg19:Y:20888624-G-A hg38:Y:18726738-G-A P4_Dst **
hg19:Y:15776923-C-A hg38:Y:13665043-C-A **
hg38:Y:11030751-G-T **
hg19:Y:21770401-C-A hg38:Y:19608515-C-A **
hg19:Y:3833456-A-G hg38:Y:3965415-A-G **
hg19:Y:16245483-C-A hg38:Y:14133603-C-A **
hg38:Y:11652656-C-A DYZ17 **
hg19:Y:14832187-C-A hg38:Y:12720254-C-A **
hg19:Y:14311747-T-C hg38:Y:12191041-T-C **
hg19:Y:28708927-C-A hg38:Y:26562780-C-A **
hg19:Y:2680704-G-T hg38:Y:2812663-G-T **
hg19:Y:2680710-G-T hg38:Y:2812669-G-T **
hg19:Y:2680712-G-T hg38:Y:2812671-G-T **
hg19:Y:7670876-C-A hg38:Y:7802835-C-A **
hg19:Y:14511361-C-A hg38:Y:12399566-C-A **
hg19:Y:15986470-C-A hg38:Y:13874590-C-A **
hg19:Y:17933997-C-A hg38:Y:15822117-C-A **
hg19:Y:23066767-G-A hg38:Y:20904881-G-A **
hg38:Y:10884486-G-C **
hg19:Y:20318496-T-C hg38:Y:18156610-T-C P5_Dst **
hg19:Y:23065137-G-T hg38:Y:20903251-G-T **
hg19:Y:19720621-C-A hg38:Y:17608741-C-A P5_Prx **
hg19:Y:14511867-C-A hg38:Y:12400072-C-A **
hg19:Y:2701320-A-G hg38:Y:2833279-A-G **
hg19:Y:28777320-C-A hg38:Y:26631173-C-A **
hg19:Y:23127634-C-A hg38:Y:20965748-C-A **
hg38:Y:10760450-C-A **
hg19:Y:19107428-G-A hg38:Y:16995548-G-A **
hg38:Y:10760444-C-T **
hg19:Y:18951332-C-A hg38:Y:16839452-C-A **
hg19:Y:21127447-C-A hg38:Y:18965561-C-A **
hg19:Y:6535507-C-A hg38:Y:6667466-C-A **
hg19:Y:6831353-C-A hg38:Y:6963312-C-A **
hg19:Y:17735188-C-A hg38:Y:15623308-C-A **
hg38:Y:10791149-T-C **
hg19:Y:4017101-C-A hg38:Y:4149060-C-A **
hg19:Y:23066758-T-G hg38:Y:20904872-T-G **
hg19:Y:23066762-A-T hg38:Y:20904876-A-T **
hg19:Y:23066779-A-T hg38:Y:20904893-A-T **
hg19:Y:5785805-C-A hg38:Y:5917764-C-A **
hg19:Y:17375033-G-T hg38:Y:15263153-G-T **
hg19:Y:15400334-C-A hg38:Y:13288454-C-A **
hg38:Y:10795098-A-T **
hg19:Y:15398355-C-A hg38:Y:13286475-C-A **
hg19:Y:21141159-C-A hg38:Y:18979273-C-A **
hg19:Y:13932799-C-A hg38:Y:11812093-C-A **
hg38:Y:10961293-T-C **
hg19:Y:14291626-T-A hg38:Y:12170920-T-A **
hg19:Y:17014589-C-T hg38:Y:14902709-C-T **
hg38:Y:10828201-C-G **
hg19:Y:13553305-C-A hg38:Y:11397629-C-A **
hg19:Y:15769040-C-A hg38:Y:13657160-C-A **
hg19:Y:14021465-C-A hg38:Y:11900759-C-A **
hg19:Y:2888869-T-C hg38:Y:3020828-T-C **
hg38:Y:10971712-T-C **
hg19:Y:3693625-G-T hg38:Y:3825584-G-T **
hg19:Y:7664620-C-A hg38:Y:7796579-C-A **
hg19:Y:24384940-T-A hg38:Y:22238793-T-A **
hg19:Y:28103949-C-CTT hg38:Y:25957802-C-CTT P1_Y2 22×T**
hg19:Y:2814844-C-G hg38:Y:2946803-C-G **
hg19:Y:13929270-C-G hg38:Y:11808564-C-G **
hg19:Y:14815981-C-A hg38:Y:12704052-C-A **
hg19:Y:28689273-C-A hg38:Y:26543126-C-A **
hg19:Y:6751966-C-A hg38:Y:6883925-C-A **
hg19:Y:16181018-C-A hg38:Y:14069138-C-A **
hg19:Y:24485674-TC-T hg38:Y:22339527-TC-T **
hg19:Y:19379557-C-A hg38:Y:17267677-C-A **
hg19:Y:14986296-C-A hg38:Y:12874364-C-A **
hg19:Y:3961538-C-A hg38:Y:4093497-C-A **
hg38:Y:10656023-C-A **
hg19:Y:7505994-C-A hg38:Y:7637953-C-A IR1_L **
hg19:Y:16210881-A-T hg38:Y:14099001-A-T **
hg19:Y:23372028-C-A hg38:Y:21210142-C-A **
hg38:Y:10877770-C-A **
hg19:Y:21823246-C-A hg38:Y:19661360-C-A **
hg38:Y:11645723-G-T DYZ17 **
hg19:Y:8835168-C-A hg38:Y:8967127-C-A **
hg38:Y:11025987-C-A **
hg19:Y:21208720-G-T hg38:Y:19046834-G-T **
hg38:Y:10978676-C-A **
hg19:Y:5127664-A-G hg38:Y:5259623-A-G **
hg19:Y:22241621-A-C hg38:Y:20079735-A-C DYZ19 **
hg19:Y:6654933-G-T hg38:Y:6786892-G-T **
hg38:Y:10671921-C-A **
hg19:Y:24872021-G-T hg38:Y:22725874-G-T IR1_R **
hg38:Y:11029305-C-A **
hg19:Y:14537809-C-A hg38:Y:12426010-C-A FGC38301 **
hg38:Y:10888064-C-A **
hg19:Y:23036857-C-A hg38:Y:20874971-C-A **
hg19:Y:2680718-C-A hg38:Y:2812677-C-A **
hg38:Y:10866696-C-A **
hg19:Y:3229070-C-A hg38:Y:3361029-C-A FGC3269 **
hg38:Y:10955227-T-A **
hg19:Y:9639090-GGCTT-G hg38:Y:9801481-GGCTT-G IR3_Prx **
hg19:Y:28519617-C-A hg38:Y:26373470-C-A **
hg19:Y:21770095-C-A hg38:Y:19608209-C-A **
hg38:Y:10760279-A-C **
hg38:Y:10984788-G-C **
hg38:Y:10898374-TTTCCA-T **
hg38:Y:10951880-C-A **
hg38:Y:10859856-A-C **
hg19:Y:2852743-C-A hg38:Y:2984702-C-A FGC77080 **
hg19:Y:7174363-C-A hg38:Y:7306322-C-A **
hg19:Y:16881430-C-A hg38:Y:14769550-C-A **
hg19:Y:18756215-C-A hg38:Y:16644335-C-A **
hg19:Y:14527555-C-A hg38:Y:12415756-C-A **
hg19:Y:5449423-A-G hg38:Y:5581382-A-G **
hg19:Y:2699665-A-G hg38:Y:2831624-A-G **
hg19:Y:2768392-T-A hg38:Y:2900351-T-A **
hg19:Y:2773403-C-T hg38:Y:2905362-C-T **
hg19:Y:2774812-G-T hg38:Y:2906771-G-T **
hg19:Y:2857064-G-T hg38:Y:2989023-G-T **
hg19:Y:2909624-CA-C hg38:Y:3041583-CA-C **
hg19:Y:2954763-G-A hg38:Y:3086722-G-A **
hg19:Y:3029007-C-A hg38:Y:3160966-C-A **
hg19:Y:3045783-C-A hg38:Y:3177742-C-A **
hg19:Y:3075375-A-G hg38:Y:3207334-A-G **
hg19:Y:3158697-T-C hg38:Y:3290656-T-C FT14972 **
hg19:Y:3186024-C-A hg38:Y:3317983-C-A **
hg19:Y:3389959-C-A hg38:Y:3521918-C-A **
hg19:Y:3396366-G-T hg38:Y:3528325-G-T **
hg19:Y:3396413-G-T hg38:Y:3528372-G-T **
hg19:Y:3405557-C-A hg38:Y:3537516-C-A **
hg19:Y:3410531-C-A hg38:Y:3542490-C-A **
hg19:Y:3437011-G-T hg38:Y:3568970-G-T **
hg19:Y:3438104-A-G hg38:Y:3570063-A-G **
hg19:Y:3438143-A-G hg38:Y:3570102-A-G **
hg19:Y:3580232-C-A hg38:Y:3712191-C-A **
hg19:Y:3652405-G-T hg38:Y:3784364-G-T **
hg19:Y:3706377-C-A hg38:Y:3838336-C-A **
hg19:Y:3953879-G-T hg38:Y:4085838-G-T **
hg19:Y:3981621-G-T hg38:Y:4113580-G-T **
hg19:Y:4081718-C-A hg38:Y:4213677-C-A **
hg19:Y:4124263-G-T hg38:Y:4256222-G-T **
hg19:Y:4144388-T-C hg38:Y:4276347-T-C **
hg19:Y:4313017-C-A hg38:Y:4444976-C-A **
hg19:Y:4326459-T-A hg38:Y:4458418-T-A **
hg19:Y:4372392-C-A hg38:Y:4504351-C-A **
hg19:Y:4437782-C-A hg38:Y:4569741-C-A **
hg19:Y:4553798-T-C hg38:Y:4685757-T-C **
hg19:Y:4687106-T-G hg38:Y:4819065-T-G **
hg19:Y:4687109-T-C hg38:Y:4819068-T-C **
hg19:Y:4687115-C-G hg38:Y:4819074-C-G **
hg19:Y:4687117-C-T hg38:Y:4819076-C-T **
hg19:Y:4779878-A-G hg38:Y:4911837-A-G **
hg19:Y:4880240-C-A hg38:Y:5012199-C-A **
hg19:Y:4887644-A-C hg38:Y:5019603-A-C **
hg19:Y:4930306-A-G hg38:Y:5062265-A-G **
hg19:Y:5100812-C-A hg38:Y:5232771-C-A **
hg19:Y:5185468-C-A hg38:Y:5317427-C-A **
hg19:Y:5292824-T-G hg38:Y:5424783-T-G **
hg19:Y:5561590-C-A hg38:Y:5693549-C-A **
hg19:Y:5614123-G-T hg38:Y:5746082-G-T **
hg19:Y:5618864-T-C hg38:Y:5750823-T-C **
hg19:Y:5619007-C-A hg38:Y:5750966-C-A **
hg19:Y:5648621-C-A hg38:Y:5780580-C-A **
hg19:Y:5687292-C-A hg38:Y:5819251-C-A **
hg19:Y:5728915-A-G hg38:Y:5860874-A-G **
hg19:Y:5798972-C-A hg38:Y:5930931-C-A **
hg19:Y:5798982-A-C hg38:Y:5930941-A-C **
hg19:Y:5976522-T-C hg38:Y:6108481-T-C **
hg19:Y:6091649-T-G hg38:Y:6223608-T-G **
hg19:Y:6442285-C-T hg38:Y:6574244-C-T **
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hg19:Y:7241794-A-G hg38:Y:7373753-A-G ***
hg19:Y:7241799-G-C hg38:Y:7373758-G-C ***
hg19:Y:8321435-CTTT-C,CTT hg38:Y:8453394-CTTT-C,CTT 15×T***
hg19:Y:21238688-C-A hg38:Y:19076802-C-A ***
hg38:Y:11000366-T-C ***
hg38:Y:10869965-C-G ***
hg38:Y:10895807-G-A,T ***
hg19:Y:2902156-C-A hg38:Y:3034115-C-A ***
hg19:Y:3328029-C-T hg38:Y:3459988-C-T ***
hg19:Y:6121208-T-G hg38:Y:6253167-T-G ***
hg19:Y:6435874-G-T hg38:Y:6567833-G-T ***
hg19:Y:7142797-C-T hg38:Y:7274756-C-T ***
hg19:Y:7145764-G-A hg38:Y:7277723-G-A ***
hg19:Y:7264932-A-G hg38:Y:7396891-A-G ***
hg19:Y:10031276-C-T hg38:Y:10193667-C-T ***
hg38:Y:10769753-T-C ***
hg38:Y:10921611-C-A ***
hg38:Y:10999703-C-A ***
hg38:Y:11020997-T-C ***
hg19:Y:13405938-C-A hg38:Y:11250262-C-A ***
hg38:Y:11646312-G-A DYZ17 ***
hg19:Y:13805066-T-CAAACG hg38:Y:11684360-T-CAAACG DYZ17 ***
hg19:Y:14319589-A-ATG hg38:Y:12198883-A-ATG ***
hg19:Y:14685939-T-C hg38:Y:12574005-T-C ***
hg19:Y:14743468-G-A hg38:Y:12631537-G-A ***
hg19:Y:14747510-G-A hg38:Y:12635579-G-A ***
hg19:Y:15108916-CTTT-C,CT hg38:Y:12997003-CTTT-C,CT 15×T***
hg19:Y:15430587-C-A hg38:Y:13318707-C-A ***
hg19:Y:18679925-CAA-C,CAAA hg38:Y:16568045-CAA-C,CAAA 25×A***
hg19:Y:21092191-CTTTTTT-C,CTT hg38:Y:18930305-CTTTTTT-C,CTT 18×T***
hg19:Y:22078132-G-T hg38:Y:19916246-G-T ***
hg19:Y:24402160-C-T hg38:Y:22256013-C-T ***
hg38:Y:56844745-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N1124461085278078890867976290
Kit: N112446993620780593537928450
Used in age calculations1085278080593537976290
Counts of SNPs66
Variant counts last updated 2026-02-02 03:04:33.


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