McNeiladge

FTDNA: 227117, BigY2: 227117, BigY3: 227117
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > CTS3386 > S19268

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
227117		BigY2
227117		BigY3
227117
9474412-G-T 9636803-G-T A+
25617956-A-G 23471809-A-G P1_gr1 A+
20386823-G-C 18224937-G-C P5_Dst A+
26142862-G-A 23996715-G-A P1_Y1 A*A*
20924113-C-A 18762227-C-A P4_Dst A*
24282790-C-T 22136643-C-T P3_t1 A*A*
20323695-C-CT 18161809-C-CT P5_Dst 9×TA*
22231549-G-C 20069663-G-C DYZ19 ***A*
19792957-C-G 17681077-C-G P5_Prx ***A*A*
19712624-G-A 17600744-G-A P5_Prx ***A*A*
19655006-G-T 17543126-G-T P5_Prx A*
19685735-G-A 17573855-G-A P5_Prx A*
20627858-C-G 18465972-C-G P4_Prx A*
20720061-G-T 18558175-G-T P4_Prx A*
19875340-G-A 17763460-G-A P5_Prx ***A*A*
6392390-C-A 6524349-C-A ***A*A*
27632064-C-A 25485917-C-A P1_Y2 A*
26330369-G-T 24184222-G-T P1_Y1 A*
22476962-T-A 20315076-T-A FGC40150 DYZ19 ++
13689935-G-A 11534259-G-A BY88607 ++
4925615-T-C 5057574-T-C FGC80315 +++
4638705-C-T 4770664-C-T FT81402 +
3904292-T-C 4036251-T-C FT81270 +
2877789-G-A 3009748-G-A FGC40132 YY+++
14720-G-T +
16641821-GTA-G 14529941-GTA-G ++
22271294-G-T 20109408-G-T FGC40149 DYZ19 ++
10059834-G-C 10222225-G-C BY83404 ++
2914987-G-T 3046946-G-T FGC40133 Y**+
22480375-C-A 20318489-C-A FGC80324 DYZ19 ++
22469616-G-T 20307730-G-T BY48623 FGC80323 DYZ19 +++
9880983-T-A 10043374-T-A FGC40139 YY+++
22525479-T-C 20363593-T-C FGC40151 Y+++
6593928-G-C 6725887-G-C FGC40134 +++
22815603-G-C 20653717-G-C FGC40153 YY+++
23040818-A-AT 20878932-A-AT +++
23992544-G-A 21846397-G-A FGC40154 +++
24449571-A-T 22303424-A-T FGC80325 Y+++
24521589-G-A 22375442-G-A FGC40155 +++
14911795-G-A 12799862-G-A FT81933 YY**+
6967864-CT-C 7099823-CT-C ++
28461208-G-C 26315061-G-C FGC40156 +++
18712715-C-T 16600835-C-T FGC40147 YY++
28804166-G-A 26658019-G-A BY151731 ++
7172070-C-T 7304029-C-T BY63644 YY++
2807024-TTATATATATATATATATATATATATA-T 2938983-TTATATATATATATATATATATATATA-T 20×TA+++
22751613-T-G 20589727-T-G FGC40152 YY+++
22459564-G-T 20297678-G-T BY43889 FGC80322 DYZ19 ***+
19483753-C-CCA 17371873-C-CCA +*+
15336776-C-A 13224894-C-A FGC40141 YY+++
7216931-T-G 7348890-T-G FGC40135 YY+++
14554954-C-T 12443155-C-T FT81913 Y+
7222426-T-C 7354385-T-C FGC80317 Y**++
13875214-C-T 11754508-C-T FT81822 Y+
7583951-T-C 7715910-T-C FGC40136 YY+++
10056885-G-T 10219276-G-T +
19468963-G-T 17357083-G-T FGC80321 YY+++
8381040-T-A 8512999-T-A FGC40137 YY+++
9940693-C-G 10103084-C-G FT183072 Y+
6931120-G-C 7063079-G-C FGC80316 YY+++
6072582-G-A 6204541-G-A FT81659 +
6021133-C-T 6153092-C-T FT81650 +
13888070-C-A 11767364-C-A FGC80319 YY+++
14217553-G-T 12096847-G-T FGC40140 YY+++
14836635-G-A 12724702-G-A FGC80320 YY+++
17424804-C-T 15312924-C-T Z13760 YY+++
4836422-A-G 4968381-A-G FT81430 +
19442873-G-C 17330993-G-C FGC40148 YY+++
9056177-G-C 9218568-G-C FGC40138 Y+++
4757038-A-G 4888997-A-G FT81422 +
15373188-T-A 13261308-T-A FGC40142 YY+++
15713502-G-A 13601622-G-A Y18848 FGC40131 YY+++
17120053-T-C 15008173-T-C FGC40143 YY+++
18163911-C-A 16052031-C-A FGC40146 YY+++
17571047-G-T 15459167-G-T FGC40144 YY+++
17971607-C-T 15859727-C-T FGC40145 YY+++
17816060-ATT-A 15704180-ATT-A +
6867824-C-CCCCCT 6999783-C-CCCCCT **
22320064-T-A 20158178-T-A DYZ19 *****
22302835-A-T 20140949-A-T DYZ19 ****
15321368-C-T 13209486-C-T **
15653635-T-A 13541755-T-A **
15495390-C-A 13383510-C-A **
15386392-C-A 13274512-C-A **
15677224-T-C 13565344-T-C **
15171384-C-A 13059470-C-A **
15286025-C-A 13174124-C-A **
14803016-A-C 12691087-A-C **
15060585-C-T 12948677-C-T **
15050039-A-G 12938130-A-G **
14526540-C-A 12414741-C-A **
15050023-T-C 12938114-T-C **
15034933-G-T 12923021-G-T **
15011770-G-A 12899858-G-A **
14926461-TCAAAAA-T 12814526-TCAAAAA-T **
14539182-C-A 12427383-C-A **
14909481-C-A 12797548-C-A **
14681332-G-T 12569398-G-T **
14671151-C-A 12559217-C-A **
14598630-A-T 12486830-A-T **
14539394-A-T 12427595-A-T **
14584696-C-T 12472896-C-T **
27982169-CATTATT-C 25836022-CATTATT-C P1_Y2 10×ATT**
15732864-T-C 13620984-T-C **
16039115-C-A 13927235-C-A **
16551074-T-C 14439194-T-C **
16539739-C-A 14427859-C-A **
16492474-C-A 14380594-C-A **
16465889-C-T 14354009-C-T **
16336935-C-A 14225055-C-A **
16147890-A-AG 14036010-A-AG P8_Dst **
16147495-AG-A 14035615-AG-A P8_Dst **
16059018-A-T 13947138-A-T **
14471794-C-A 12351063-C-A **
16059014-G-T 13947134-G-T **
16059011-A-C 13947131-A-C **
16046833-C-A 13934953-C-A **
16007992-A-C 13896112-A-C **
15743136-A-G 13631256-A-G **
16002277-G-A 13890397-G-A **
15909380-C-A 13797500-C-A **
15842794-C-G 13730914-C-G **
15842774-A-G 13730894-A-G **
15842773-G-T 13730893-G-T **
15842644-C-T 13730764-C-T **
15841879-C-A 13729999-C-A **
15834971-G-T 13723091-G-T **
15821453-G-A 13709573-G-A **
15821452-T-C 13709572-T-C **
15788161-T-A 13676281-T-A **
15785914-C-T 13674034-C-T **
14490779-C-A 12370048-C-A **
13596458-C-A 11440782-C-A **
14432156-TA-T 12311429-TA-T **
13254571-T-C 11098895-T-C **
13544862-T-A 11389186-T-A **
13521171-C-A 11365495-C-A **
13512399-T-C 11356723-T-C **
13494099-C-A 11338423-C-A **
13460474-T-C 11304798-T-C **
13457716-GATTCCATTCCATTCCATTCCATTCCATTCCATTCC-G 11302040-GATTCCATTCCATTCCATTCCATTCCATTCCATTCC-G 12×ATTCC**
13446153-C-A 11290477-C-A **
13394839-C-T 11239163-C-T 13×G**
13311756-C-A 11156080-C-A **
13295305-G-A 11139629-G-A 11×A**
13295298-C-A 11139622-C-A **
13257406-G-T 11101730-G-T **
13225895-C-A 11070219-C-A **
16704406-C-A 14592526-C-A **
13218677-A-G 11063001-A-G **
13209332-C-A 11053656-C-A **
13202731-C-A 11047055-C-A **
11025820-C-A **
10988682-T-C **
10984121-C-A **
10971002-A-C **
10969961-T-C **
10969951-T-C **
10969743-C-T **
10948671-C-A **
10948327-A-G **
13574202-G-T 11418526-G-T **
13598479-C-A 11442803-C-A **
14427373-C-A 12306648-C-A **
14054054-C-A 11933348-C-A **
14404865-G-C 12284162-G-C **
14385219-A-G 12264515-A-G **
14361924-C-A 12241219-C-A **
14284818-A-G 12164112-A-G **
14193048-T-A 12072342-T-A **
14184418-T-A 12063712-T-A **
14184415-G-A 12063709-G-A **
14184411-G-A 12063705-G-A **
14184403-G-A 12063697-G-A **
14147046-A-G 12026340-A-G **
14077091-C-A 11956385-C-A **
14077085-C-G 11956379-C-G **
14051738-G-T 11931032-G-T **
13601149-C-A 11445473-C-A **
13940321-C-A 11819615-C-A FT53446 **
13901940-C-G 11781234-C-G **
13899078-G-T 11778372-G-T **
13898787-G-T 11778081-G-T **
13893389-A-G 11772683-A-G **
13880116-C-A 11759410-C-A **
13861036-A-G 11740330-A-G **
13858346-A-G 11737640-A-G **
11670172-GA-G **
11657468-G-T **
11648452-A-G **
13630872-C-A 11475196-C-A **
13606636-T-C 11450960-T-C **
16688357-G-T 14576477-G-T **
19078935-C-A 16967055-C-A **
16738638-T-A 14626758-T-A **
23411310-C-A 21249424-C-A **
26060204-A-G 23914057-A-G P1_Y1 **
24475088-C-A 22328941-C-A **
24298896-C-CAA 22152749-C-CAA P3_t1 **
24127453-A-C 21981306-A-C P3_b1 **
23997265-C-A 21851118-C-A FGC44757 **
23981912-C-A 21835765-C-A **
23875282-G-C 21713396-G-C **
23875213-A-G 21713327-A-G **
23808796-C-A 21646910-C-A **
23602163-C-T 21440277-C-T **
23522584-C-A 21360698-C-A **
23512380-A-C 21350494-A-C **
23293619-T-G 21131733-T-G **
26355498-C-A 24209351-C-A P1_Y1 **
23293596-GTGTATATATATA-G 21131710-GTGTATATATATA-G **
23261276-T-G 21099390-T-G **
22997463-C-T 20835577-C-T **
22851672-C-A 20689786-C-A **
22602304-C-A 20440418-C-A **
22215008-T-A 20053122-T-A **
22170294-A-T 20008408-A-T **
22134025-C-A 19972139-C-A **
22132410-C-A 19970524-C-A **
22055238-T-C 19893352-T-C **
21996235-G-T 19834349-G-T **
21983997-C-A 19822111-C-A **
26154009-A-T 24007862-A-T P1_Y1 **
26391572-T-C 24245425-T-C P1_Y1 **
21850254-G-T 19688368-G-T **
28609589-C-T 26463442-C-T **
26010720-C-A 23864573-C-A P1_Y1 **
18370353-T-G 16258473-T-G P6_Prx **
13564588-C-G 11408912-C-G **
19604809-C-CAA 17492929-C-CAA P5_Prx 19×A**
56863043-T-A **
56823337-C-A **
56823322-A-G **
28745111-C-A 26598964-C-A **
28725983-C-A 26579836-C-A **
28724194-TG-T 26578047-TG-T **
28716402-C-A 26570255-C-A **
28640447-C-A 26494300-C-A **
28609587-G-T 26463440-G-T **
26415627-A-G 24269480-A-G P1_Y1 **
28609582-G-T 26463435-G-T **
28609570-GA-G 26463423-GA-G **
28605954-C-A 26459807-C-A **
28484326-C-A 26338179-C-A **
28438144-T-A 26291997-T-A P1_gr2 **
28369966-T-C 26223819-T-C P1_gr2 **
28147159-CA-C 26001012-CA-C P1_b4 **
27971701-C-A 25825554-C-A P1_Y2 **
27636256-G-T 25490109-G-T P1_Y2 **
27595818-C-T 25449671-C-T P1_Y2 **
27576128-T-C 25429981-T-C P1_Y2 **
27521992-G-T 25375845-G-T P1_Y2 **
26415676-CAAAAA-C 24269529-CAAAAA-C P1_Y1 20×A**
21949120-C-T 19787234-C-T **
21807042-T-A 19645156-T-A **
16938210-T-C 14826330-T-C **
17702273-C-T 15590393-C-T **
18768432-T-A 16656552-T-A **
18737634-C-A 16625754-C-A **
18630829-T-C 16518949-T-C **
18630825-T-C 16518945-T-C **
18630815-C-T 16518935-C-T **
18611783-C-A 16499903-C-A **
18071643-T-A 15959763-T-A **
18059776-T-C 15947896-T-C **
18007174-C-A 15895294-C-A P7_Gap **
17995024-G-A 15883144-G-A P7_Prx **
17753817-T-C 15641937-T-C **
17702284-A-T 15590404-A-T **
17492035-C-T 15380155-C-T **
18796627-A-C 16684747-A-C **
17470842-T-C 15358962-T-C **
17375707-G-T 15263827-G-T **
17369368-T-C 15257488-T-C **
17177126-C-A 15065246-C-A **
17164229-T-A 15052349-T-A **
17158989-TTTTTTG-T 15047109-TTTTTTG-T **
17042817-C-A 14930937-C-A **
16997562-A-T 14885682-A-T **
16993369-A-G 14881489-A-G **
16987198-T-A 14875318-T-A **
16987172-G-A 14875292-G-A **
16938219-T-C 14826339-T-C **
18780465-C-A 16668585-C-A **
18838826-G-A 16726946-G-A **
21738744-T-C 19576858-T-C **
20640930-G-GAA 18479044-G-GAA P4_Prx 14×A**
21603933-C-A 19442047-C-A **
21554334-G-A 19392448-G-A FT2186 **
21476473-C-A 19314587-C-A **
21462609-C-G 19300723-C-G **
21459604-C-A 19297718-C-A **
21457198-C-A 19295312-C-A **
21427201-C-A 19265315-C-A **
21352928-C-A 19191042-C-A **
21253889-C-A 19092003-C-A **
21238268-C-T 19076382-C-T **
21138629-C-G 18976743-C-G **
21014998-T-C 18853112-T-C P4_Dst **
20569381-C-A 18407495-C-A P5_Dst **
18955801-G-A 16843921-G-A **
20376806-CT-C 18214920-CT-C P5_Dst **
19963832-A-ATATT 17851952-A-ATATT P5_Prx **
19799989-C-A 17688109-C-A P5_Prx **
19449301-C-A 17337421-C-A **
19304673-C-A 17192793-C-A **
19299432-C-A 17187552-C-A FT240353 **
19155981-C-A 17044101-C-A **
19125689-CGT-C 17013809-CGT-C **
10940655-C-G **
19053232-C-T 16941352-C-T **
19052403-A-C 16940523-A-C **
18976520-C-A 16864640-C-A **
18955852-C-A 16843972-C-A **
10943031-G-A **
10904614-A-G **
5125400-T-C 5257359-T-C **
4032206-C-A 4164165-C-A **
4970087-C-A 5102046-C-A **
4918305-T-C 5050264-T-C **
4888464-A-G 5020423-A-G **
4873823-G-A 5005782-G-A **
4872599-G-T 5004558-G-T **
4788904-G-T 4920863-G-T **
4672253-A-T 4804212-A-T **
4316766-C-A 4448725-C-A **
4262392-C-A 4394351-C-A **
4215534-G-T 4347493-G-T **
4022071-C-T 4154030-C-T **
5059550-C-A 5191509-C-A **
3862212-C-A 3994171-C-A **
3850201-C-T 3982160-C-T **
3835101-G-T 3967060-G-T **
3833474-T-C 3965433-T-C **
3833473-C-T 3965432-C-T **
3695987-T-C 3827946-T-C **
3681363-T-A 3813322-T-A **
3591554-A-G 3723513-A-G **
3559604-C-A 3691563-C-A **
3559556-C-A 3691515-C-A **
3545910-G-T 3677869-G-T **
4996135-T-G 5128094-T-G **
5081078-T-A 5213037-T-A **
3279498-C-A 3411457-C-A **
5691323-G-T 5823282-G-T **
6582304-T-A 6714263-T-A **
6523917-C-T 6655876-C-T **
6491404-C-A 6623363-C-A **
6404815-G-T 6536774-G-T **
6100464-C-A 6232423-C-A **
6028229-A-G 6160188-A-G **
5980376-T-C 6112335-T-C **
5937242-C-CTATATA 6069201-C-CTATATA 18×TA**
5772971-G-T 5904930-G-T **
5727957-C-A 5859916-C-A **
5690188-C-A 5822147-C-A **
5215800-C-A 5347759-C-A **
5674649-G-A 5806608-G-A **
5609332-A-G 5741291-A-G **
5587070-T-A 5719029-T-A **
5542103-G-T 5674062-G-T **
5503280-G-T 5635239-G-T **
5495270-A-T 5627229-A-T **
5445561-T-A 5577520-T-A **
5445447-G-T 5577406-G-T **
5393566-C-A 5525525-C-A **
5369609-T-C 5501568-T-C **
5221065-C-A 5353024-C-A **
3399735-G-T 3531694-G-T **
3272763-G-A 3404722-G-A **
6769937-C-A 6901896-C-A **
28369970-A-T 26223823-A-T P1_gr2 **
19129053-CTTTTTT-C 17017173-CTTTTTT-C 16×T**
4540739-C-A 4672698-C-A **
22816350-G-A 20654464-G-A **
17672065-C-A 15560185-C-A BY116529 **
28369956-C-A 26223809-C-A P1_gr2 **
22164230-C-A 20002344-C-A **
7650583-C-A 7782542-C-A **
21299189-C-A 19137303-C-A **
28635218-C-A 26489071-C-A **
2909260-G-T 3041219-G-T **
10020171-C-A 10182562-C-A **
25592761-C-A 23446614-C-A P1_gr1 **
3345585-C-A 3477544-C-A **
15146742-C-A 13034829-C-A **
58996624-C-A 56850477-C-A **
17538156-C-A 15426276-C-A **
28369980-T-A 26223833-T-A P1_gr2 **
25207997-G-A 23061850-G-A P2_r1 **
15050043-T-C 12938134-T-C **
15050033-C-G 12938124-C-G **
7038432-C-A 7170391-C-A **
27997643-GA-G 25851496-GA-G P1_Y2 16×A**
25207822-C-CAAA 23061675-C-CAAA P2_r1 51×A**
17369376-C-A 15257496-C-A **
9125516-G-T **
3170504-G-T 3302463-G-T **
2759731-C-A 2891690-C-A **
3131714-G-T 3263673-G-T **
3103109-T-G 3235068-T-G **
3103028-C-A 3234987-C-A **
3073177-A-T 3205136-A-T **
3032588-T-A 3164547-T-A **
2926679-C-A 3058638-C-A **
2773869-A-G 2905828-A-G **
2770780-T-A 2902739-T-A **
2770714-G-A 2902673-G-A **
2770699-T-G 2902658-T-G **
2730069-T-A 2862028-T-A **
9926741-C-A 10089132-C-A **
2729948-C-G 2861907-C-G **
2718924-G-C 2850883-G-C **
2685567-C-T 2817526-C-T **
16968143-T-C 14856263-T-C **
15770634-C-A 13658754-C-A **
5358621-C-A 5490580-C-A **
17310907-C-T 15199027-C-T **
17300734-G-C 15188854-G-C **
10824051-C-A **
14718411-C-A 12606479-C-A **
14267111-CA-C 12146405-CA-C **
6682281-T-C 6814240-T-C **
5778187-A-C 5910146-A-C **
6827782-C-A 6959741-C-A **
10781237-C-A **
10828838-C-A **
10932459-T-A **
10828828-C-T FGC78347 **
10826721-C-A **
10810918-A-T **
10802183-C-T **
10802156-C-G **
10932511-A-T **
10786538-C-G **
6828600-T-C 6960559-T-C **
10773267-C-A **
10831811-C-A **
10762890-C-A **
10756995-G-C **
10748411-C-A **
10748384-G-T **
10686662-T-C **
10671619-C-A **
10659174-C-A **
10617629-C-A **
10031183-CCCTAAAATTTAAA-C 10193574-CCCTAAAATTTAAA-C **
9700803-ATG-A 9863194-ATG-A IR3_Prx **
10831803-C-A **
10836666-T-C **
9700691-C-A 9863082-C-A IR3_Prx **
10925346-C-A **
10914619-C-G **
10904615-A-G **
10914652-T-C FGC80847 **
7443490-A-G 7575449-A-G **
10914704-G-T **
10918303-A-T **
10904596-G-C **
10904592-A-C **
10904585-A-C **
10898899-G-T **
10894701-C-A **
10837865-C-G **
10932437-G-C **
10932456-G-T **
10890381-C-A **
10890320-C-A **
10873462-C-A **
10867841-A-T **
10865863-C-A **
10857665-C-T **
10844598-C-T FT219286 **
10842539-C-A **
10932458-C-T **
10914642-A-G **
10932925-C-A **
9482389-G-A 9644780-G-A **
7180136-A-G 7312095-A-G **
9437287-T-A 9599678-T-A **
7489129-C-G 7621088-C-G IR1_L **
7363915-A-T 7495874-A-T **
7319806-C-A 7451765-C-A **
7270309-A-C 7402268-A-C **
7248570-C-A 7380529-C-A **
7201542-T-G 7333501-T-G **
7201489-C-A 7333448-C-A **
7188264-C-A 7320223-C-A **
10938654-C-A **
7821081-C-A 7953040-C-A **
7166237-G-T 7298196-G-T **
7165450-G-T 7297409-G-T **
7152793-C-A 7284752-C-A **
7140638-C-G 7272597-C-G **
7110503-T-C 7242462-T-C **
7063392-C-A 7195351-C-A **
7039292-G-A 7171251-G-A **
6978243-C-A 7110202-C-A **
6934618-G-A 7066577-G-A **
7774147-C-A 7906106-C-A **
10914620-A-T **
7829185-C-A 7961144-C-A **
8697722-C-A 8829681-C-A **
9416743-T-G 9579134-T-G ****
9385072-C-A 9547463-C-A **
10934093-C-A **
9117027-TA-T 9279418-TA-T **
9077274-G-T 9239665-G-T **
9040257-G-A 9202648-G-A **
9034668-G-A 9197059-G-A **
9025440-A-C 9187831-A-C **
8856755-T-A 8988714-T-A **
8698679-T-C 8830638-T-C **
7861480-A-C 7993439-A-C **
8698037-A-T 8829996-A-T **
8296798-C-A 8428757-C-A **
7996864-C-A 8128823-C-A **
8002017-T-C 8133976-T-C **
8002071-G-A 8134030-G-A **
8293792-C-A 8425751-C-A **
22244863-T-A 20082977-T-A DYZ19 ***
3201648-G-GA 3333607-G-GA 10×A***
56828189-C-T ***
9956378-A-AAG 10118769-A-AAG 8×AAG***
22244859-G-C 20082973-G-C DYZ19 ***
27791947-T-G 25645800-T-G P1_Y2 ***
22244822-T-C 20082936-T-C DYZ19 ***
22451768-C-T 20289882-C-T DYZ19 ***
22313402-C-G 20151516-C-G DYZ19 ***
22296760-G-A 20134874-G-A DYZ19 ***
22284220-C-G 20122334-C-G DYZ19 ***
56832841-TGCCAG-T,TGCCAC ***
13860129-G-A 11739423-G-A ***
7383851-CAAAAAAA-C 7515810-CAAAAAAA-C 24×A***
13714341-A-G 11558665-A-G ***
13830225-GA-G 11709519-GA-G ***
13830229-G-T 11709523-G-T ***
24100709-T-C 21954562-T-C P3_b1 ***
13845541-A-AAATGGAATGG,G 11724835-A-AAATGGAATGG,G 8×AATGG***
13860119-T-C 11739413-T-C ***
13737177-TCGAAC-T 11581501-TCGAAC-T ***
13860121-A-G 11739415-A-G ***
6929132-CTTTTT-C 7061091-CTTTTT-C 26×T***
13860122-A-T 11739416-A-T ***
16475324-CGGG-C,CGGGG 14363444-CGGG-C,CGGGG 11×G***
13714333-ATTGAT-A 11558657-ATTGAT-A ***
22244809-A-T 20082923-A-T BY38900 DYZ19 ***
13700464-T-G 11544788-T-G ***
17802196-AG-A 15690316-AG-A ***
13459103-T-TTCCCC 11303427-T-TTCCCC ***
18982584-AAAG-A,AAAA 16870704-AAAG-A,AAAA ***
13450176-CCATTG-C,CCATTC 11294500-CCATTG-C,CCATTC ***
13447090-ACCATTCTATTACTTT-A 11291414-ACCATTCTATTACTTT-A ***
22244790-T-G 20082904-T-G FGC71298 DYZ19 ***
10025922-G-A 10188313-G-A ***
10025908-A-G 10188299-A-G ***
22244796-T-A 20082910-T-A DYZ19 ***
24095697-T-A 21949550-T-A P3_b1 ***
10940601-A-T ***
24138899-A-G 21992752-A-G P3_b1 ***
14324921-GA-G 12204215-GA-G ***
5644733-T-C 5776692-T-C ***
16702028-T-C 14590148-T-C ***
5864496-C-A 5996455-C-A ***
5864663-C-A 5996622-C-A ***
7704481-C-A 7836440-C-A ***
9014283-C-A 9176674-C-A ***
9385062-C-A 9547453-C-A ***
10791092-G-T ***
10940626-G-A ***
11672626-G-A ***
10838980-C-A ***
10842499-C-A ***
10892631-T-C ***
13435136-C-A 11279460-C-A ***
25472735-C-A 23326588-C-A P2_r2 23×A***
10949492-C-A ***
5449442-G-T 5581401-G-T ***
17885853-G-T 15773973-G-T ***
24834707-T-C 22688560-T-C P3_b2 ***
13856276-A-AGGAAT 11735570-A-AGGAAT ***
24914282-A-G 22768135-A-G g1 ***
24953782-T-A 22807635-T-A g1 ***
25250508-T-C 23104361-T-C P2_r1 ***
25333853-AC-A 23187706-AC-A P2_r1 ***
26991333-T-TAAAA 24845186-T-TAAAA P1_r4 33×A***
58973226-G-T 56827079-G-T ***
13455784-AAGTCCATTCT-A,C 11300108-AAGTCCATTCT-A,C ***
13455624-CACTCGGGTTG-C 11299948-CACTCGGGTTG-C ***
21156829-C-T 18994943-C-T ***
13864550-T-A,G 11743844-T-A,G ***
13686912-C-A,CGAATG 11531236-C-A,CGAATG 10×GAATG***
23838957-G-A 21677071-G-A ***
23759112-CT-A 21597226-CT-A ***
23625448-A-G 21463562-A-G ***
23196210-C-T 21034324-C-T ***
2718901-TTG-T 2850860-TTG-T ***
2833178-CTTTT-C,CTTT 2965137-CTTTT-C,CTTT 19×T***
25198319-C-CT 23052172-C-CT g1 14×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
McNeiladge1324141114-14111212131330169-1011112615193015-15-17-17111219-221515191835-39111211915-1681110810101223-231610121214812222013121112111112123515916122426191111131211912121011113012122413101021151812241412152412231913141791211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2271171041880074897007547047
Kit: 227117983130979808057865639
Kit: 2271171478064092900768274176
Used in age calculations1478064092900768274176
Counts of SNPs3026
Variant counts last updated 2020-06-05 02:43:12.


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