Hogshead
FTDNA: 434089, BigY2: 434089Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 434089 | BigY2 434089 |
---|---|---|---|---|---|---|---|---|---|
6222309-A-AT | 6354268-A-AT | L627 | IR3_Dst | 8×T | *** | A* | |||
6285399-A-T | 6417358-A-T | IR3_Dst | *** | A* | |||||
22310155-A-G | 20148269-A-G | DYZ19 | *** | A* | |||||
25354463-A-T | 23208316-A-T | P2_r1 | *** | A* | |||||
26233048-T-C | 24086901-T-C | P1_Y1 | *** | A* | |||||
13697673-A-G | 11541997-A-G | A* | |||||||
6890305-A-T | 7022264-A-T | Z1909 Y61300 | Z1911 | Y | Y | + | + | ||
22440551-T-G | 20278665-T-G | BY21269 | DYZ19 | + | + | ||||
13478880-C-T | 11323204-C-T | BY86020 | ** | + | |||||
6803517-T-C | 6935476-T-C | Y60991 | Y | Y | + | + | |||
6991097-C-G | 7123056-C-G | Y61358 | Y | Y | + | + | |||
7125913-G-A | 7257872-G-A | BY63412 | Y | ** | + | ||||
7316339-G-A | 7448298-G-A | BZ4162 | Y | Y | + | + | |||
7329534-G-T | 7461493-G-T | Y | Y | + | + | ||||
8483009-G-T | 8614968-G-T | Y63880 | Y | Y | + | + | |||
8520794-C-G | 8652753-C-G | Y63975 | Y | Y | + | + | |||
8592559-C-T | 8724518-C-T | Y64156 | Y | Y | + | + | |||
8617977-G-T | 8749936-G-T | Y64212 | Y | Y | + | + | |||
8664604-C-T | 8796563-C-T | Y64296 | Y | Y | + | + | |||
9469997-T-A | 9632388-T-A | BY79649 | + | + | |||||
9745336-T-C | 9907727-T-C | FGC59023 | + | + | |||||
9745343-A-G | 9907734-A-G | BY53934 | ** | + | |||||
9745344-T-C | 9907735-T-C | BY53935 | ** | + | |||||
13464896-C-T | 11309220-C-T | BY85705 | + | + | |||||
14484041-T-C | 12363310-T-C | Y66798 | Y | Y | + | + | |||
15504319-A-T | 13392439-A-T | Y68361 | Y | Y | + | + | |||
16367758-C-T | 14255878-C-T | Y69753 | Y | Y | + | + | |||
16385562-T-A | 14273682-T-A | Y69786 | Y | Y | + | + | |||
17133319-T-C | 15021439-T-C | Y71107 | Y | Y | + | + | |||
17144643-T-C | 15032763-T-C | Y71128 | Y | Y | + | + | |||
17270749-C-G | 15158869-C-G | Y36812 | Y | Y | + | + | |||
17875160-C-T | 15763280-C-T | Y72541 | Y | Y | + | + | |||
18642624-G-T | 16530744-G-T | Y73779 | Y | Y | + | + | |||
18929785-C-G | 16817905-C-G | BY124882 | Y | Y | + | + | |||
19206173-C-A | 17094293-C-A | Y74876 | Y | Y | + | + | |||
19359051-T-A | 17247171-T-A | Y75185 | Y | Y | + | + | |||
21101634-A-T | 18939748-A-T | Y75805 | Y | Y | + | + | |||
22136503-C-T | 19974617-C-T | Y77813 | Y | Y | + | + | |||
22228216-T-C | 20066330-T-C | BY213153 | DYZ19 | + | + | ||||
22267021-C-G | 20105135-C-G | BY214816 | DYZ19 | *** | + | ||||
22293653-C-G | 20131767-C-G | BY216398 | DYZ19 | *** | + | ||||
22440526-G-A | 20278640-G-A | BY24462 | DYZ19 | + | + | ||||
22440557-A-C | 20278671-A-C | BY51713 | DYZ19 | ** | + | ||||
22440558-G-A | 20278672-G-A | BY52573 | DYZ19 | ** | + | ||||
22440565-T-C | 20278679-T-C | BY24463 | DYZ19 | + | + | ||||
22440622-G-T | 20278736-G-T | BY176351 | DYZ19 | + | *** | ||||
22457664-C-G | 20295778-C-G | BY52720 | DYZ19 | + | + | ||||
23497767-G-A | 21335881-G-A | Y79971 | Y | Y | + | + | |||
23561947-T-C | 21400061-T-C | Y80086 | Y | Y | + | + | |||
23802540-C-T | 21640654-C-T | Y80379 | Y | + | + | ||||
24379836-A-G | 22233689-A-G | Y80600 | Y | + | + | ||||
24450115-G-A | 22303968-G-A | Y80740 | Y | + | + | ||||
26594671-A-G | 24448524-A-G | P1_g2 | + | ||||||
2830056-C-CT | 2962015-C-CT | + | + | ||||||
7383-G-T | + | ||||||||
12916-G-T | + | ||||||||
6934397-A-ATTG | 7066356-A-ATTG | 10×TTG | *** | * | |||||
28786710-A-G | 26640563-A-G | * | |||||||
22302924-T-A | 20141038-T-A | DYZ19 | *** | * | |||||
3712572-G-T | 3844531-G-T | *** | * | ||||||
22302799-C-T | 20140913-C-T | DYZ19 | *** | * | |||||
23796100-G-C | 21634214-G-C | Y | *** | * | |||||
26100494-G-C | 23954347-G-C | P1_Y1 | * | ||||||
5471875-A-G | 5603834-A-G | ** | |||||||
6224566-G-T | 6356525-G-T | FGC3249 | Z17687 | IR3_Dst | ** | ||||
22440615-A-C | 20278729-A-C | BY21270 | DYZ19 | ** | |||||
3389980-C-T | 3521939-C-T | ** | |||||||
6099402-G-A | 6231361-G-A | ** | |||||||
5425189-G-T | 5557148-G-T | Z27781 | ** | ||||||
17307226-C-T | 15195346-C-T | *** | ** | ||||||
17307231-C-T | 15195351-C-T | *** | ** | ||||||
22440600-A-G | 20278714-A-G | DYZ19 | ** | ||||||
22440602-T-A | 20278716-T-A | DYZ19 | ** | ||||||
22440609-C-G | 20278723-C-G | DYZ19 | ** | ||||||
22440613-T-A | 20278727-T-A | DYZ19 | ** | ||||||
23006644-G-T | 20844758-G-T | ** | ** | ||||||
4360704-C-A | 4492663-C-A | ** | |||||||
15655227-G-T | 13543347-G-T | ** | |||||||
16019067-C-A | 13907187-C-A | ** | |||||||
19732411-T-A | 17620531-T-A | P5_Prx | ** | ||||||
6763848-C-A | 6895807-C-A | ** | |||||||
14774283-TC-T | 12662352-TC-T | ** | |||||||
25940165-G-T | 23794018-G-T | FGC45234 | P1_Y1 | ** | |||||
18480045-A-AC | 16368165-A-AC | P6_Dst | ** | ||||||
5675590-G-T | 5807549-G-T | ** | |||||||
14704567-C-A | 12592633-C-A | ** | |||||||
13726104-C-A | 11570428-C-A | ** | |||||||
13958444-A-G | 11837738-A-G | ** | |||||||
24447000-C-A | 22300853-C-A | ** | |||||||
2842964-C-A | 2974923-C-A | ** | |||||||
17065995-G-T | 14954115-G-T | ** | |||||||
5051280-C-A | 5183239-C-A | ** | |||||||
5824192-C-A | 5956151-C-A | ** | |||||||
21888254-TA-T | 19726368-TA-T | ** | |||||||
14992482-A-C | 12880567-A-C | ** | |||||||
20101697-T-A | 17989817-T-A | P5_Dst | ** | ||||||
15400041-C-T | 13288161-C-T | ** | |||||||
13485679-A-C | 11330003-A-C | ** | |||||||
6712714-G-T | 6844673-G-T | ** | |||||||
14292750-C-A | 12172044-C-A | ** | |||||||
28617687-C-A | 26471540-C-A | ** | |||||||
6729600-C-A | 6861559-C-A | ** | |||||||
13485661-T-A | 11329985-T-A | ** | |||||||
3804472-C-A | 3936431-C-A | ** | |||||||
10987303-T-A | ** | ||||||||
7164497-T-G | 7296456-T-G | ** | |||||||
2906753-C-A | 3038712-C-A | ** | |||||||
10060744-C-A | 10223135-C-A | ** | |||||||
16034305-C-A | 13922425-C-A | ** | |||||||
2683407-A-G | 2815366-A-G | ** | |||||||
10828802-C-A | ** | ||||||||
10810690-C-A | ** | ||||||||
14216291-C-A | 12095585-C-A | ** | |||||||
10870909-C-A | ** | ||||||||
13227005-C-A | 11071329-C-A | ** | |||||||
19407639-G-T | 17295759-G-T | ** | |||||||
19853737-T-G | 17741857-T-G | BY160798 | P5_Prx | ** | |||||
2845200-C-A | 2977159-C-A | ** | |||||||
16319631-A-T | 14207751-A-T | ** | |||||||
4351377-C-A | 4483336-C-A | ** | |||||||
11036020-C-A | ** | ||||||||
9117079-C-A | 9279470-C-A | ** | |||||||
8661251-C-A | 8793210-C-A | ** | |||||||
4919481-C-A | 5051440-C-A | ** | |||||||
13707382-G-T | 11551706-G-T | ** | |||||||
7116085-C-A | 7248044-C-A | ** | |||||||
23831416-C-A | 21669530-C-A | ** | |||||||
17306781-A-G | 15194901-A-G | ** | |||||||
19982159-A-AT | 17870279-A-AT | P5_Prx | ** | ||||||
28484766-C-A | 26338619-C-A | FT164469 | ** | ||||||
9537708-GT-G | 9700099-GT-G | IR3_Prx | ** | ||||||
18071797-C-A | 15959917-C-A | ** | |||||||
5204467-T-A | 5336426-T-A | ** | |||||||
23005390-C-A | 20843504-C-A | ** | |||||||
11662887-A-G | ** | ||||||||
19558252-C-A | 17446372-C-A | ** | |||||||
2673501-G-T | 2805460-G-T | ** | |||||||
27583249-G-T | 25437102-G-T | P1_Y2 | ** | ||||||
10673527-C-A | ** | ||||||||
4383250-G-T | 4515209-G-T | ** | |||||||
28726559-C-A | 26580412-C-A | ** | |||||||
7111614-C-A | 7243573-C-A | ** | |||||||
21262695-C-A | 19100809-C-A | ** | |||||||
10002270-G-A | 10164661-G-A | ** | |||||||
19936144-C-A | 17824264-C-A | P5_Prx | ** | ||||||
28642882-G-T | 26496735-G-T | ** | |||||||
10983129-T-C | ** | ||||||||
10983158-A-C | ** | ||||||||
10983162-A-C | ** | ||||||||
10983182-T-A | ** | ||||||||
28484493-C-A | 26338346-C-A | ** | |||||||
7164503-T-G | 7296462-T-G | ** | |||||||
13491715-C-A | 11336039-C-A | ** | |||||||
15221176-T-C | 13109262-T-C | ** | |||||||
15399434-A-T | 13287554-A-T | FT89339 | ** | ||||||
10050320-C-A | 10212711-C-A | ** | |||||||
6453771-G-T | 6585730-G-T | ** | |||||||
4016585-C-A | 4148544-C-A | ** | |||||||
18965971-T-C | 16854091-T-C | ** | |||||||
8077459-C-A | 8209418-C-A | ** | |||||||
7186643-C-A | 7318602-C-A | ** | |||||||
21455857-C-A | 19293971-C-A | ** | |||||||
10653825-T-A | ** | ||||||||
13926870-C-A | 11806164-C-A | ** | |||||||
13929258-C-A | 11808552-C-A | ** | |||||||
5867353-C-A | 5999312-C-A | ** | |||||||
5924434-C-A | 6056393-C-A | ** | |||||||
13961354-T-C | 11840648-T-C | ** | |||||||
5316769-G-A | 5448728-G-A | ** | |||||||
11672732-G-C | ** | ||||||||
17029230-G-T | 14917350-G-T | ** | |||||||
21742613-G-T | 19580727-G-T | ** | |||||||
10810640-T-C | ** | ||||||||
6596330-C-A | 6728289-C-A | ** | |||||||
9702910-G-A | 9865301-G-A | IR3_Prx | ** | ||||||
4920876-G-T | 5052835-G-T | ** | |||||||
6646917-G-T | 6778876-G-T | ** | |||||||
23261351-T-G | 21099465-T-G | ** | |||||||
14269848-C-A | 12149142-C-A | ** | |||||||
16635973-C-A | 14524093-C-A | ** | |||||||
2688780-A-G | 2820739-A-G | ** | |||||||
28492526-C-A | 26346379-C-A | ** | |||||||
5443975-C-A | 5575934-C-A | ** | |||||||
16427658-G-T | 14315778-G-T | M12302 | ** | ||||||
11654897-C-A | ** | ||||||||
10941566-G-T | ** | ||||||||
15218660-G-T | 13106746-G-T | ** | |||||||
15210983-G-T | 13099069-G-T | ** | |||||||
13409822-G-A | 11254146-G-A | ** | |||||||
11673103-C-A | ** | ||||||||
14366509-C-A | 12245804-C-A | ** | |||||||
10916410-G-T | FT92012 | ** | |||||||
13474587-T-A | 11318911-T-A | ** | |||||||
10839923-A-T | ** | ||||||||
4505344-C-A | 4637303-C-A | ** | |||||||
21182396-T-C | 19020510-T-C | ** | |||||||
15286041-C-A | 13174140-C-A | ** | |||||||
13487680-T-C | 11332004-T-C | ** | |||||||
3595159-GA-G | 3727118-GA-G | 10×A | ** | ||||||
2649616-C-A | 2781575-C-A | ** | |||||||
2670433-T-G | 2802392-T-G | ** | |||||||
2671596-G-T | 2803555-G-T | ** | |||||||
2810432-G-T | 2942391-G-T | ** | |||||||
2900005-C-A | 3031964-C-A | ** | |||||||
2900095-T-C | 3032054-T-C | ** | |||||||
2906998-C-A | 3038957-C-A | ** | |||||||
2926551-A-C | 3058510-A-C | ** | |||||||
2926603-A-C | 3058562-A-C | ** | |||||||
2940575-G-T | 3072534-G-T | ** | |||||||
2985897-T-G | 3117856-T-G | ** | |||||||
3047177-C-A | 3179136-C-A | ** | |||||||
3107579-G-C | 3239538-G-C | ** | |||||||
3116769-C-A | 3248728-C-A | ** | |||||||
3122469-C-A | 3254428-C-A | ** | |||||||
3146579-C-A | 3278538-C-A | ** | |||||||
3165267-C-A | 3297226-C-A | ** | |||||||
3172729-A-T | 3304688-A-T | ** | |||||||
3178950-T-C | 3310909-T-C | ** | |||||||
3191940-C-T | 3323899-C-T | ** | |||||||
3246354-G-T | 3378313-G-T | ** | |||||||
3271793-C-T | 3403752-C-T | ** | |||||||
3286337-C-T | 3418296-C-T | ** | |||||||
3332567-T-C | 3464526-T-C | ** | |||||||
3348912-C-A | 3480871-C-A | ** | |||||||
3388635-G-A | 3520594-G-A | ** | |||||||
3409130-G-T | 3541089-G-T | ** | |||||||
3439133-G-T | 3571092-G-T | ** | |||||||
3461191-G-T | 3593150-G-T | ** | |||||||
3491991-T-G | 3623950-T-G | ** | |||||||
3492823-T-C | 3624782-T-C | ** | |||||||
3522802-G-C | 3654761-G-C | ** | |||||||
3523149-C-A | 3655108-C-A | ** | |||||||
3544513-CT-C | 3676472-CT-C | ** | |||||||
3544591-T-G | 3676550-T-G | ** | |||||||
3594310-G-C | 3726269-G-C | ** | |||||||
3598883-C-A | 3730842-C-A | ** | |||||||
3605837-G-T | 3737796-G-T | ** | |||||||
3649198-A-C | 3781157-A-C | ** | |||||||
3712185-G-T | 3844144-G-T | ** | |||||||
3727927-A-G | 3859886-A-G | ** | |||||||
3820944-C-A | 3952903-C-A | ** | |||||||
3850164-C-A | 3982123-C-A | ** | |||||||
3852339-A-G | 3984298-A-G | ** | |||||||
3937544-T-G | 4069503-T-G | ** | |||||||
3951450-T-C | 4083409-T-C | ** | |||||||
3987843-C-A | 4119802-C-A | ** | |||||||
3995446-C-A | 4127405-C-A | ** | |||||||
3996828-A-T | 4128787-A-T | ** | |||||||
3999444-T-A | 4131403-T-A | ** | |||||||
4000544-T-C | 4132503-T-C | ** | |||||||
4000545-G-T | 4132504-G-T | ** | |||||||
4000549-A-G | 4132508-A-G | ** | |||||||
4000557-G-A | 4132516-G-A | ** | |||||||
4000561-A-G | 4132520-A-G | ** | |||||||
4000567-T-C | 4132526-T-C | ** | |||||||
4000566-AT-A | 4132525-AT-A | ** | |||||||
4024303-C-A | 4156262-C-A | ** | |||||||
4036530-A-G | 4168489-A-G | ** | |||||||
4036607-G-A | 4168566-G-A | ** | |||||||
4069435-T-A | 4201394-T-A | ** | |||||||
4099990-G-T | 4231949-G-T | ** | |||||||
4103127-A-T | 4235086-A-T | ** | |||||||
4103130-G-T | 4235089-G-T | ** | |||||||
4110097-T-G | 4242056-T-G | ** | |||||||
4129035-C-T | 4260994-C-T | ** | |||||||
4152274-T-A | 4284233-T-A | ** | |||||||
4179283-A-C | 4311242-A-C | ** | |||||||
4201043-G-T | 4333002-G-T | ** | |||||||
4201052-C-A | 4333011-C-A | ** | |||||||
4215947-G-T | 4347906-G-T | ** | |||||||
4235680-C-A | 4367639-C-A | ** | |||||||
4288664-A-G | 4420623-A-G | ** | |||||||
4302156-C-T | 4434115-C-T | ** | |||||||
4302158-C-T | 4434117-C-T | ** | |||||||
4308641-A-G | 4440600-A-G | ** | |||||||
4357933-G-A | 4489892-G-A | ** | |||||||
4366130-G-T | 4498089-G-T | ** | |||||||
4366172-G-T | 4498131-G-T | ** | |||||||
4405365-G-T | 4537324-G-T | ** | |||||||
4425503-G-A | 4557462-G-A | ** | |||||||
4466586-C-G | 4598545-C-G | ** | |||||||
4486712-C-G | 4618671-C-G | ** | |||||||
4499885-C-A | 4631844-C-A | ** | |||||||
4509294-TC-T | 4641253-TC-T | ** | |||||||
4516548-C-A | 4648507-C-A | ** | |||||||
4523015-G-C | 4654974-G-C | ** | |||||||
4527022-A-C | 4658981-A-C | FTB85274 | ** | ||||||
4540530-C-A | 4672489-C-A | ** | |||||||
4561086-G-T | 4693045-G-T | ** | |||||||
4572051-C-A | 4704010-C-A | ** | |||||||
4572058-C-A | 4704017-C-A | ** | |||||||
4620945-A-G | 4752904-A-G | ** | |||||||
4621193-G-T | 4753152-G-T | ** | |||||||
4629015-C-A | 4760974-C-A | ** | |||||||
4665964-A-G | 4797923-A-G | ** | |||||||
4712120-C-A | 4844079-C-A | ** | |||||||
4717076-T-C | 4849035-T-C | ** | |||||||
4743568-G-T | 4875527-G-T | ** | |||||||
4764900-C-A | 4896859-C-A | ** | |||||||
4786304-A-C | 4918263-A-C | ** | |||||||
4786334-A-C | 4918293-A-C | ** | |||||||
4806800-G-T | 4938759-G-T | ** | |||||||
4806813-G-T | 4938772-G-T | ** | |||||||
4837634-G-T | 4969593-G-T | ** | |||||||
4907087-G-T | 5039046-G-T | ** | |||||||
4907181-G-T | 5039140-G-T | ** | |||||||
4907202-G-T | 5039161-G-T | ** | |||||||
4907985-T-C | 5039944-T-C | ** | |||||||
4919509-C-A | 5051468-C-A | ** | |||||||
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16842878-TG-T | 14730998-TG-T | ** | |||||||
16886711-A-G | 14774831-A-G | ** | |||||||
16886714-A-G | 14774834-A-G | ** | |||||||
16886715-G-A | 14774835-G-A | ** | |||||||
16886729-T-C | 14774849-T-C | ** | |||||||
16886733-G-A | 14774853-G-A | ** | |||||||
16886743-G-C | 14774863-G-C | ** | |||||||
16926738-G-T | 14814858-G-T | ** | |||||||
16989976-C-G | 14878096-C-G | ** | |||||||
16989977-A-G | 14878097-A-G | ** | |||||||
16989980-C-G | 14878100-C-G | ** | |||||||
16996437-C-A | 14884557-C-A | ** | |||||||
16996451-C-A | 14884571-C-A | ** | |||||||
16997512-G-T | 14885632-G-T | FT330198 | ** | ||||||
16997548-G-T | 14885668-G-T | ** | |||||||
17027189-A-G | 14915309-A-G | ** | |||||||
17029229-A-G | 14917349-A-G | ** | |||||||
17029231-G-T | 14917351-G-T | ** | |||||||
17093652-C-A | 14981772-C-A | ** | |||||||
17153555-C-A | 15041675-C-A | ** | |||||||
17306806-C-A | 15194926-C-A | ** | |||||||
17346137-TCTTTC-T | 15234257-TCTTTC-T | ** | |||||||
17376553-C-A | 15264673-C-A | ** | |||||||
17376607-T-G | 15264727-T-G | ** | |||||||
17499541-G-T | 15387661-G-T | ** | |||||||
17503308-G-T | 15391428-G-T | Y71789 | ** | ||||||
17621399-C-A | 15509519-C-A | ** | |||||||
17621427-C-A | 15509547-C-A | ** | |||||||
17621443-C-A | 15509563-C-A | ** | |||||||
17643293-G-A | 15531413-G-A | ** | |||||||
17701632-G-T | 15589752-G-T | ** | |||||||
17703279-G-A | 15591399-G-A | ** | |||||||
17707226-A-C | 15595346-A-C | ** | |||||||
17813225-T-A | 15701345-T-A | ** | |||||||
17930764-C-A | 15818884-C-A | ** | |||||||
17930958-T-C | 15819078-T-C | ** | |||||||
17946953-T-G | 15835073-T-G | ** | |||||||
18071612-A-G | 15959732-A-G | ** | |||||||
18119719-C-A | 16007839-C-A | ** | |||||||
18183995-C-A | 16072115-C-A | ** | |||||||
18186019-G-T | 16074139-G-T | ** | |||||||
18190331-C-A | 16078451-C-A | ** | |||||||
18191573-T-C | 16079693-T-C | ** | |||||||
18191656-C-A | 16079776-C-A | ** | |||||||
18226268-G-A | 16114388-G-A | FT89532 | ** | ||||||
18270238-A-C | 16158358-A-C | ** | |||||||
18408740-A-G | 16296860-A-G | P6_Gap | ** | ||||||
18623231-T-G | 16511351-T-G | ** | |||||||
18707963-C-A | 16596083-C-A | ** | |||||||
18750021-C-G | 16638141-C-G | ** | |||||||
18864654-G-A | 16752774-G-A | ** | |||||||
18948083-A-C | 16836203-A-C | ** | |||||||
19012552-C-A | 16900672-C-A | ** | |||||||
19031146-A-T | 16919266-A-T | ** | |||||||
19031265-C-T | 16919385-C-T | ** | |||||||
19043177-G-C | 16931297-G-C | ** | |||||||
19079126-C-A | 16967246-C-A | ** | |||||||
19097254-G-T | 16985374-G-T | ** | |||||||
19302303-A-G | 17190423-A-G | ** | |||||||
19310708-C-G | 17198828-C-G | ** | |||||||
19310710-T-G | 17198830-T-G | ** | |||||||
19444212-A-G | 17332332-A-G | ** | |||||||
19507050-C-A | 17395170-C-A | ** | |||||||
19512189-A-C | 17400309-A-C | ** | |||||||
19527149-G-A | 17415269-G-A | ** | |||||||
19677775-G-T | 17565895-G-T | P5_Prx | ** | ||||||
19815631-G-A | 17703751-G-A | P5_Prx | ** | ||||||
19815642-T-A | 17703762-T-A | P5_Prx | ** | ||||||
19891007-T-C | 17779127-T-C | P5_Prx | ** | ||||||
19910575-G-C | 17798695-G-C | P5_Prx | ** | ||||||
20001144-G-T | 17889264-G-T | P5_Prx | ** | ||||||
20084447-T-C | 17972567-T-C | P5_Dst | ** | ||||||
20084455-T-TCTTG | 17972575-T-TCTTG | P5_Dst | ** | ||||||
20084519-T-TC | 17972639-T-TC | P5_Dst | ** | ||||||
20557597-G-A | 18395711-G-A | P5_Dst | ** | ||||||
20570322-C-A | 18408436-C-A | P5_Dst | ** | ||||||
20824983-C-A | 18663097-C-A | P4_Gap | ** | ||||||
21054514-G-A | 18892628-G-A | ** | |||||||
21072454-C-T | 18910568-C-T | ** | |||||||
21118719-A-C | 18956833-A-C | ** | |||||||
21152265-T-G | 18990379-T-G | ** | |||||||
21155114-G-T | 18993228-G-T | ** | |||||||
21162432-G-T | 19000546-G-T | ** | |||||||
21371435-C-A | 19209549-C-A | ** | |||||||
21380524-A-G | 19218638-A-G | ** | |||||||
21421424-C-A | 19259538-C-A | ** | |||||||
21583798-G-A | 19421912-G-A | ** | |||||||
21678168-A-C | 19516282-A-C | ** | |||||||
21697387-C-A | 19535501-C-A | ** | |||||||
21789898-C-A | 19628012-C-A | ** | |||||||
21984131-C-A | 19822245-C-A | ** | |||||||
22040977-C-A | 19879091-C-A | ** | |||||||
22097143-A-G | 19935257-A-G | ** | |||||||
22132474-C-A | 19970588-C-A | A15845 | ** | ||||||
22170277-C-A | 20008391-C-A | ** | |||||||
22170371-T-A | 20008485-T-A | ** | |||||||
22263954-C-A | 20102068-C-A | DYZ19 | ** | ||||||
22359532-T-G | 20197646-T-G | DYZ19 | ** | ||||||
22426258-G-C | 20264372-G-C | DYZ19 | ** | ||||||
22542808-C-A | 20380922-C-A | ** | |||||||
22593829-G-T | 20431943-G-T | ** | |||||||
22593883-G-A | 20431997-G-A | ** | |||||||
22593905-T-G | 20432019-T-G | ** | |||||||
22602318-A-T | 20440432-A-T | ** | |||||||
22615170-A-G | 20453284-A-G | ** | |||||||
22659507-G-T | 20497621-G-T | FTB53550 | ** | ||||||
22659512-G-T | 20497626-G-T | ** | |||||||
22840300-G-T | 20678414-G-T | ** | |||||||
22856338-G-T | 20694452-G-T | ** | |||||||
22877466-C-A | 20715580-C-A | ** | |||||||
22877515-C-A | 20715629-C-A | ** | |||||||
22949845-A-G | 20787959-A-G | ** | |||||||
22965493-G-T | 20803607-G-T | Y110245 | ** | ||||||
22965515-T-A | 20803629-T-A | ** | |||||||
23008382-G-T | 20846496-G-T | ** | |||||||
23038241-C-A | 20876355-C-A | ** | |||||||
23104769-G-C | 20942883-G-C | ** | |||||||
23111680-C-A | 20949794-C-A | F25805 | ** | ||||||
23184782-C-A | 21022896-C-A | ** | |||||||
23193134-C-A | 21031248-C-A | ** | |||||||
23261313-T-A | 21099427-T-A | ** | |||||||
23261372-C-G | 21099486-C-G | ** | |||||||
23286676-C-A | 21124790-C-A | ** | |||||||
23337185-T-C | 21175299-T-C | ** | |||||||
23341522-C-A | 21179636-C-A | ** | |||||||
23341781-C-G | 21179895-C-G | ** | |||||||
23421066-G-TTT | 21259180-G-TTT | ** | |||||||
23421076-C-T | 21259190-C-T | ** | |||||||
23465436-C-A | 21303550-C-A | ** | |||||||
23600468-T-C | 21438582-T-C | ** | |||||||
23672434-C-A | 21510548-C-A | ** | |||||||
23672448-C-T | 21510562-C-T | ** | |||||||
23723111-A-C | 21561225-A-C | ** | |||||||
23790126-G-C | 21628240-G-C | ** | |||||||
23818916-G-C | 21657030-G-C | ** | |||||||
23831415-C-A | 21669529-C-A | ** | |||||||
23831425-G-A | 21669539-G-A | ** | |||||||
21752715-C-A | ** | ||||||||
24280866-A-C | 22134719-A-C | P3_t1 | ** | ||||||
24403733-C-A | 22257586-C-A | ** | |||||||
24931635-G-T | 22785488-G-T | g1 | ** | ||||||
25530766-T-C | 23384619-T-C | P1_gr1 | ** | ||||||
25530855-C-A | 23384708-C-A | P1_gr1 | ** | ||||||
25940182-G-T | 23794035-G-T | P1_Y1 | ** | ||||||
25940194-G-T | 23794047-G-T | P1_Y1 | ** | ||||||
25940196-G-C | 23794049-G-C | P1_Y1 | ** | ||||||
26032896-G-C | 23886749-G-C | P1_Y1 | ** | ||||||
26066362-T-TC | 23920215-T-TC | P1_Y1 | ** | ||||||
26170379-A-T | 24024232-A-T | P1_Y1 | ** | ||||||
26908742-G-T | 24762595-G-T | P1_r3 | ** | ||||||
27423646-T-C | 25277499-T-C | P1_g3 | ** | ||||||
27540919-C-CAG | 25394772-C-CAG | P1_Y2 | ** | ||||||
27665357-T-TAC | 25519210-T-TAC | P1_Y2 | ** | ||||||
28441403-G-A | 26295256-G-A | P1_gr2 | ** | ||||||
28496361-AAAAAA-G | 26350214-AAAAAA-G | ** | |||||||
28511058-T-G | 26364911-T-G | ** | |||||||
28523946-G-T | 26377799-G-T | ** | |||||||
28529764-G-T | 26383617-G-T | ** | |||||||
28529768-G-T | 26383621-G-T | ** | |||||||
28529774-GAATAGTCT-G | 26383627-GAATAGTCT-G | ** | |||||||
28543074-A-G | 26396927-A-G | ** | |||||||
28551511-C-A | 26405364-C-A | ** | |||||||
28610326-G-A | 26464179-G-A | ** | |||||||
28624599-T-A | 26478452-T-A | ** | |||||||
28631500-C-A | 26485353-C-A | ** | |||||||
28654076-A-C | 26507929-A-C | ** | |||||||
28674889-T-C | 26528742-T-C | ** | |||||||
28698797-C-A | 26552650-C-A | ** | |||||||
28714971-T-C | 26568824-T-C | ** | |||||||
28742402-G-A | 26596255-G-A | ** | |||||||
28760158-G-T | 26614011-G-T | ** | |||||||
28761433-G-T | 26615286-G-T | ** | |||||||
28792941-G-C | 26646794-G-C | ** | |||||||
56838139-G-T | ** | ||||||||
56845385-T-G | ** | ||||||||
56849616-C-A | ** | ||||||||
56855004-C-A | ** | ||||||||
56855009-G-T | ** | ||||||||
56858134-G-T | ** | ||||||||
56867881-C-A | ** | ||||||||
56868078-C-A | ** | ||||||||
56879689-T-C | ** | ||||||||
12815-A-T | ** | ||||||||
12821-A-T | ** | ||||||||
12901-G-T | ** | ||||||||
12906-A-G | ** | ||||||||
12910-A-C | ** | ||||||||
9952611-C-A | 10115002-C-A | *** | |||||||
13299685-CG-C | 11144009-CG-C | *** | |||||||
13805255-T-A | 11684549-T-A | *** | |||||||
9292541-T-C | 9454932-T-C | *** | |||||||
7046076-C-A | 7178035-C-A | *** | |||||||
13697670-TTCAAATGGAATGGAATGCAA-T | 11541994-TTCAAATGGAATGGAATGCAA-T | *** | |||||||
13805256-C-T | 11684550-C-T | *** | |||||||
22254814-T-G | 20092928-T-G | DYZ19 | *** | ||||||
22289941-C-T | 20128055-C-T | DYZ19 | *** | ||||||
24149170-A-G | 22003023-A-G | P3_b1 | *** | ||||||
24183865-CT-C | 22037718-CT-C | P3_b1 | *** | ||||||
24656197-A-G | 22510050-A-G | P3_b2 | *** | ||||||
25009171-G-A | 22863024-G-A | g1 | *** | ||||||
25758462-A-G | 23612315-A-G | P1_b3 | *** | ||||||
25942851-A-G | 23796704-A-G | P1_Y1 | *** | ||||||
26000911-G-A | 23854764-G-A | P1_Y1 | *** | ||||||
26222319-C-T | 24076172-C-T | P1_Y1 | *** | ||||||
11020123-C-G | *** | ||||||||
10799437-A-C,T | *** | ||||||||
10750006-C-A | *** | ||||||||
14502043-C-A | 12390248-C-A | *** | |||||||
10760399-C-T | *** | ||||||||
10665090-TTTCCA-T | *** | ||||||||
17503844-AT-A | 15391964-AT-A | *** | |||||||
3116181-C-A | 3248140-C-A | *** | |||||||
7095894-C-A | 7227853-C-A | *** | |||||||
13488998-C-A | 11333322-C-A | *** | |||||||
10880512-A-C | *** | ||||||||
10880513-A-G | *** | ||||||||
23572604-C-T | 21410718-C-T | *** | |||||||
13880942-C-A | 11760236-C-A | FT281257 | *** | ||||||
5011272-C-A | 5143231-C-A | *** | |||||||
8649769-C-A | 8781728-C-A | *** | |||||||
9674971-T-C | 9837362-T-C | IR3_Prx | *** | ||||||
10657194-G-T | *** | ||||||||
10663734-C-A | *** | ||||||||
10668758-T-C | *** | ||||||||
10776515-TCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATA-T | *** | ||||||||
10839959-T-C,G | *** | ||||||||
10880521-C-CA | *** | ||||||||
10930161-T-C | *** | ||||||||
10964212-C-A | *** | ||||||||
11014303-A-G | *** | ||||||||
13895891-G-T | 11775185-G-T | *** | |||||||
13946249-G-T | 11825543-G-T | *** | |||||||
14422088-C-A | 12301363-C-A | *** | |||||||
14497387-T-TG | 12385592-T-TG | *** | |||||||
15034875-G-A | 12922963-G-A | *** | |||||||
16689640-C-A | 14577760-C-A | *** | |||||||
20640281-C-A | 18478395-C-A | P4_Prx | *** | ||||||
20842517-G-GGAAA,GGAAAGAAA | 18680631-G-GGAAA,GGAAAGAAA | P4_Dst | 14×GAAA | *** | |||||
22253052-C-T | 20091166-C-T | DYZ19 | *** | ||||||
23415380-G-T | 21253494-G-T | *** | |||||||
24218-C-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.