Hogshead

FTDNA: 434089, BigY2: 434089

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > CTS1751 > Z17966 > BY20462

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
434089		BigY2
434089
6222309-A-AT 6354268-A-AT L627 IR3_Dst 8×T***A*
6285399-A-T 6417358-A-T IR3_Dst ***A*
22310155-A-G 20148269-A-G DYZ19 ***A*
25354463-A-T 23208316-A-T P2_r1 ***A*
26233048-T-C 24086901-T-C P1_Y1 ***A*
13697673-A-G 11541997-A-G A*
6890305-A-T 7022264-A-T Z1909 Y61300Z1911 YY++
22440551-T-G 20278665-T-G BY21269 DYZ19 ++
13478880-C-T 11323204-C-T BY86020 **+
6803517-T-C 6935476-T-C Y60991 YY++
6991097-C-G 7123056-C-G Y61358 YY++
7125913-G-A 7257872-G-A BY63412 Y**+
7316339-G-A 7448298-G-A BZ4162 YY++
7329534-G-T 7461493-G-T YY++
8483009-G-T 8614968-G-T Y63880 YY++
8520794-C-G 8652753-C-G Y63975 YY++
8592559-C-T 8724518-C-T Y64156 YY++
8617977-G-T 8749936-G-T Y64212 YY++
8664604-C-T 8796563-C-T Y64296 YY++
9469997-T-A 9632388-T-A BY79649 ++
9745336-T-C 9907727-T-C FGC59023 ++
9745343-A-G 9907734-A-G BY53934 **+
9745344-T-C 9907735-T-C BY53935 **+
13464896-C-T 11309220-C-T BY85705 ++
14484041-T-C 12363310-T-C Y66798 YY++
15504319-A-T 13392439-A-T Y68361 YY++
16367758-C-T 14255878-C-T Y69753 YY++
16385562-T-A 14273682-T-A Y69786 YY++
17133319-T-C 15021439-T-C Y71107 YY++
17144643-T-C 15032763-T-C Y71128 YY++
17270749-C-G 15158869-C-G Y36812 YY++
17875160-C-T 15763280-C-T Y72541 YY++
18642624-G-T 16530744-G-T Y73779 YY++
18929785-C-G 16817905-C-G BY124882 YY++
19206173-C-A 17094293-C-A Y74876 YY++
19359051-T-A 17247171-T-A Y75185 YY++
21101634-A-T 18939748-A-T Y75805 YY++
22136503-C-T 19974617-C-T Y77813 YY++
22228216-T-C 20066330-T-C BY213153 DYZ19 ++
22267021-C-G 20105135-C-G BY214816 DYZ19 ***+
22293653-C-G 20131767-C-G BY216398 DYZ19 ***+
22440526-G-A 20278640-G-A BY24462 DYZ19 ++
22440557-A-C 20278671-A-C BY51713 DYZ19 **+
22440558-G-A 20278672-G-A BY52573 DYZ19 **+
22440565-T-C 20278679-T-C BY24463 DYZ19 ++
22440622-G-T 20278736-G-T BY176351 DYZ19 +***
22457664-C-G 20295778-C-G BY52720 DYZ19 ++
23497767-G-A 21335881-G-A Y79971 YY++
23561947-T-C 21400061-T-C Y80086 YY++
23802540-C-T 21640654-C-T Y80379 Y++
24379836-A-G 22233689-A-G Y80600 Y++
24450115-G-A 22303968-G-A Y80740 Y++
26594671-A-G 24448524-A-G P1_g2 +
2830056-C-CT 2962015-C-CT ++
7383-G-T +
12916-G-T +
6934397-A-ATTG 7066356-A-ATTG 10×TTG****
28786710-A-G 26640563-A-G *
22302924-T-A 20141038-T-A DYZ19 ****
3712572-G-T 3844531-G-T ****
22302799-C-T 20140913-C-T DYZ19 ****
23796100-G-C 21634214-G-C Y****
26100494-G-C 23954347-G-C P1_Y1 *
5471875-A-G 5603834-A-G **
6224566-G-T 6356525-G-T FGC3249Z17687 IR3_Dst **
22440615-A-C 20278729-A-C BY21270 DYZ19 **
3389980-C-T 3521939-C-T **
6099402-G-A 6231361-G-A **
5425189-G-T 5557148-G-T Z27781 **
17307226-C-T 15195346-C-T *****
17307231-C-T 15195351-C-T *****
22440600-A-G 20278714-A-G DYZ19 **
22440602-T-A 20278716-T-A DYZ19 **
22440609-C-G 20278723-C-G DYZ19 **
22440613-T-A 20278727-T-A DYZ19 **
23006644-G-T 20844758-G-T ****
4360704-C-A 4492663-C-A **
15655227-G-T 13543347-G-T **
16019067-C-A 13907187-C-A **
19732411-T-A 17620531-T-A P5_Prx **
6763848-C-A 6895807-C-A **
14774283-TC-T 12662352-TC-T **
25940165-G-T 23794018-G-T FGC45234 P1_Y1 **
18480045-A-AC 16368165-A-AC P6_Dst **
5675590-G-T 5807549-G-T **
14704567-C-A 12592633-C-A **
13726104-C-A 11570428-C-A **
13958444-A-G 11837738-A-G **
24447000-C-A 22300853-C-A **
2842964-C-A 2974923-C-A **
17065995-G-T 14954115-G-T **
5051280-C-A 5183239-C-A **
5824192-C-A 5956151-C-A **
21888254-TA-T 19726368-TA-T **
14992482-A-C 12880567-A-C **
20101697-T-A 17989817-T-A P5_Dst **
15400041-C-T 13288161-C-T **
13485679-A-C 11330003-A-C **
6712714-G-T 6844673-G-T **
14292750-C-A 12172044-C-A **
28617687-C-A 26471540-C-A **
6729600-C-A 6861559-C-A **
13485661-T-A 11329985-T-A **
3804472-C-A 3936431-C-A **
10987303-T-A **
7164497-T-G 7296456-T-G **
2906753-C-A 3038712-C-A **
10060744-C-A 10223135-C-A **
16034305-C-A 13922425-C-A **
2683407-A-G 2815366-A-G **
10828802-C-A **
10810690-C-A **
14216291-C-A 12095585-C-A **
10870909-C-A **
13227005-C-A 11071329-C-A **
19407639-G-T 17295759-G-T **
19853737-T-G 17741857-T-G BY160798 P5_Prx **
2845200-C-A 2977159-C-A **
16319631-A-T 14207751-A-T **
4351377-C-A 4483336-C-A **
11036020-C-A **
9117079-C-A 9279470-C-A **
8661251-C-A 8793210-C-A **
4919481-C-A 5051440-C-A **
13707382-G-T 11551706-G-T **
7116085-C-A 7248044-C-A **
23831416-C-A 21669530-C-A **
17306781-A-G 15194901-A-G **
19982159-A-AT 17870279-A-AT P5_Prx **
28484766-C-A 26338619-C-A FT164469 **
9537708-GT-G 9700099-GT-G IR3_Prx **
18071797-C-A 15959917-C-A **
5204467-T-A 5336426-T-A **
23005390-C-A 20843504-C-A **
11662887-A-G **
19558252-C-A 17446372-C-A **
2673501-G-T 2805460-G-T **
27583249-G-T 25437102-G-T P1_Y2 **
10673527-C-A **
4383250-G-T 4515209-G-T **
28726559-C-A 26580412-C-A **
7111614-C-A 7243573-C-A **
21262695-C-A 19100809-C-A **
10002270-G-A 10164661-G-A **
19936144-C-A 17824264-C-A P5_Prx **
28642882-G-T 26496735-G-T **
10983129-T-C **
10983158-A-C **
10983162-A-C **
10983182-T-A **
28484493-C-A 26338346-C-A **
7164503-T-G 7296462-T-G **
13491715-C-A 11336039-C-A **
15221176-T-C 13109262-T-C **
15399434-A-T 13287554-A-T FT89339 **
10050320-C-A 10212711-C-A **
6453771-G-T 6585730-G-T **
4016585-C-A 4148544-C-A **
18965971-T-C 16854091-T-C **
8077459-C-A 8209418-C-A **
7186643-C-A 7318602-C-A **
21455857-C-A 19293971-C-A **
10653825-T-A **
13926870-C-A 11806164-C-A **
13929258-C-A 11808552-C-A **
5867353-C-A 5999312-C-A **
5924434-C-A 6056393-C-A **
13961354-T-C 11840648-T-C **
5316769-G-A 5448728-G-A **
11672732-G-C **
17029230-G-T 14917350-G-T **
21742613-G-T 19580727-G-T **
10810640-T-C **
6596330-C-A 6728289-C-A **
9702910-G-A 9865301-G-A IR3_Prx **
4920876-G-T 5052835-G-T **
6646917-G-T 6778876-G-T **
23261351-T-G 21099465-T-G **
14269848-C-A 12149142-C-A **
16635973-C-A 14524093-C-A **
2688780-A-G 2820739-A-G **
28492526-C-A 26346379-C-A **
5443975-C-A 5575934-C-A **
16427658-G-T 14315778-G-T M12302 **
11654897-C-A **
10941566-G-T **
15218660-G-T 13106746-G-T **
15210983-G-T 13099069-G-T **
13409822-G-A 11254146-G-A **
11673103-C-A **
14366509-C-A 12245804-C-A **
10916410-G-T FT92012 **
13474587-T-A 11318911-T-A **
10839923-A-T **
4505344-C-A 4637303-C-A **
21182396-T-C 19020510-T-C **
15286041-C-A 13174140-C-A **
13487680-T-C 11332004-T-C **
3595159-GA-G 3727118-GA-G 10×A**
2649616-C-A 2781575-C-A **
2670433-T-G 2802392-T-G **
2671596-G-T 2803555-G-T **
2810432-G-T 2942391-G-T **
2900005-C-A 3031964-C-A **
2900095-T-C 3032054-T-C **
2906998-C-A 3038957-C-A **
2926551-A-C 3058510-A-C **
2926603-A-C 3058562-A-C **
2940575-G-T 3072534-G-T **
2985897-T-G 3117856-T-G **
3047177-C-A 3179136-C-A **
3107579-G-C 3239538-G-C **
3116769-C-A 3248728-C-A **
3122469-C-A 3254428-C-A **
3146579-C-A 3278538-C-A **
3165267-C-A 3297226-C-A **
3172729-A-T 3304688-A-T **
3178950-T-C 3310909-T-C **
3191940-C-T 3323899-C-T **
3246354-G-T 3378313-G-T **
3271793-C-T 3403752-C-T **
3286337-C-T 3418296-C-T **
3332567-T-C 3464526-T-C **
3348912-C-A 3480871-C-A **
3388635-G-A 3520594-G-A **
3409130-G-T 3541089-G-T **
3439133-G-T 3571092-G-T **
3461191-G-T 3593150-G-T **
3491991-T-G 3623950-T-G **
3492823-T-C 3624782-T-C **
3522802-G-C 3654761-G-C **
3523149-C-A 3655108-C-A **
3544513-CT-C 3676472-CT-C **
3544591-T-G 3676550-T-G **
3594310-G-C 3726269-G-C **
3598883-C-A 3730842-C-A **
3605837-G-T 3737796-G-T **
3649198-A-C 3781157-A-C **
3712185-G-T 3844144-G-T **
3727927-A-G 3859886-A-G **
3820944-C-A 3952903-C-A **
3850164-C-A 3982123-C-A **
3852339-A-G 3984298-A-G **
3937544-T-G 4069503-T-G **
3951450-T-C 4083409-T-C **
3987843-C-A 4119802-C-A **
3995446-C-A 4127405-C-A **
3996828-A-T 4128787-A-T **
3999444-T-A 4131403-T-A **
4000544-T-C 4132503-T-C **
4000545-G-T 4132504-G-T **
4000549-A-G 4132508-A-G **
4000557-G-A 4132516-G-A **
4000561-A-G 4132520-A-G **
4000567-T-C 4132526-T-C **
4000566-AT-A 4132525-AT-A **
4024303-C-A 4156262-C-A **
4036530-A-G 4168489-A-G **
4036607-G-A 4168566-G-A **
4069435-T-A 4201394-T-A **
4099990-G-T 4231949-G-T **
4103127-A-T 4235086-A-T **
4103130-G-T 4235089-G-T **
4110097-T-G 4242056-T-G **
4129035-C-T 4260994-C-T **
4152274-T-A 4284233-T-A **
4179283-A-C 4311242-A-C **
4201043-G-T 4333002-G-T **
4201052-C-A 4333011-C-A **
4215947-G-T 4347906-G-T **
4235680-C-A 4367639-C-A **
4288664-A-G 4420623-A-G **
4302156-C-T 4434115-C-T **
4302158-C-T 4434117-C-T **
4308641-A-G 4440600-A-G **
4357933-G-A 4489892-G-A **
4366130-G-T 4498089-G-T **
4366172-G-T 4498131-G-T **
4405365-G-T 4537324-G-T **
4425503-G-A 4557462-G-A **
4466586-C-G 4598545-C-G **
4486712-C-G 4618671-C-G **
4499885-C-A 4631844-C-A **
4509294-TC-T 4641253-TC-T **
4516548-C-A 4648507-C-A **
4523015-G-C 4654974-G-C **
4527022-A-C 4658981-A-C FTB85274 **
4540530-C-A 4672489-C-A **
4561086-G-T 4693045-G-T **
4572051-C-A 4704010-C-A **
4572058-C-A 4704017-C-A **
4620945-A-G 4752904-A-G **
4621193-G-T 4753152-G-T **
4629015-C-A 4760974-C-A **
4665964-A-G 4797923-A-G **
4712120-C-A 4844079-C-A **
4717076-T-C 4849035-T-C **
4743568-G-T 4875527-G-T **
4764900-C-A 4896859-C-A **
4786304-A-C 4918263-A-C **
4786334-A-C 4918293-A-C **
4806800-G-T 4938759-G-T **
4806813-G-T 4938772-G-T **
4837634-G-T 4969593-G-T **
4907087-G-T 5039046-G-T **
4907181-G-T 5039140-G-T **
4907202-G-T 5039161-G-T **
4907985-T-C 5039944-T-C **
4919509-C-A 5051468-C-A **
4930556-A-T 5062515-A-T **
5011226-T-G 5143185-T-G **
5019718-C-A 5151677-C-A **
5019742-C-A 5151701-C-A **
5051306-C-A 5183265-C-A **
5066174-G-T 5198133-G-T **
5170623-A-G 5302582-A-G **
5224271-A-G 5356230-A-G **
5224406-C-A 5356365-C-A **
5230892-T-A 5362851-T-A **
5231246-G-C 5363205-G-C **
5246556-T-G 5378515-T-G **
5316580-C-T 5448539-C-T **
5324363-C-A 5456322-C-A **
5352621-C-A 5484580-C-A **
5425105-G-T 5557064-G-T **
5430145-A-C 5562104-A-C **
5450025-T-C 5581984-T-C **
5554331-C-A 5686290-C-A **
5558493-T-C 5690452-T-C **
5560678-C-A 5692637-C-A **
5562427-T-G 5694386-T-G **
5576613-C-A 5708572-C-A **
5628861-C-A 5760820-C-A **
5628916-A-T 5760875-A-T **
5628981-C-A 5760940-C-A **
5670497-G-T 5802456-G-T **
5670617-G-C 5802576-G-C **
5709939-T-C 5841898-T-C **
5774867-G-T 5906826-G-T **
5774876-G-T 5906835-G-T **
5775751-C-A 5907710-C-A **
5791876-G-T 5923835-G-T **
5800639-A-C 5932598-A-C **
5824170-T-G 5956129-T-G **
5839344-T-A 5971303-T-A **
5854069-A-G 5986028-A-G **
5861695-GA-G 5993654-GA-G **
5865551-G-A 5997510-G-A **
5887672-C-A 6019631-C-A **
5888373-C-A 6020332-C-A **
5901097-G-T 6033056-G-T **
5904628-A-G 6036587-A-G **
5907363-C-A 6039322-C-A **
5980489-G-T 6112448-G-T **
6023357-G-T 6155316-G-T **
6043569-C-A 6175528-C-A **
6058956-G-T 6190915-G-T **
6066108-G-T 6198067-G-T **
6099305-G-T 6231264-G-T **
6126082-C-A 6258041-C-A **
6155258-C-A 6287217-C-A IR3_Dst **
6358693-C-A 6490652-C-A **
6370321-C-G 6502280-C-G **
6448009-C-T 6579968-C-T **
6501692-G-T 6633651-G-T **
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6541343-A-C 6673302-A-C **
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6683859-T-C 6815818-T-C **
6748874-C-A 6880833-C-A **
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6976464-A-G 7108423-A-G **
7008029-C-A 7139988-C-A **
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7063570-T-C 7195529-T-C **
7081448-C-A 7213407-C-A **
7090793-TC-T 7222752-TC-T **
7092367-C-A 7224326-C-A **
7155389-A-C 7287348-A-C **
7165569-C-A 7297528-C-A **
7180054-T-C 7312013-T-C **
7199469-G-A 7331428-G-A **
7238933-G-T 7370892-G-T **
7253861-G-A 7385820-G-A **
7254801-G-T 7386760-G-T **
7276383-C-A 7408342-C-A Y27083 **
7298861-A-C 7430820-A-C **
7303424-C-A 7435383-C-A **
7332793-C-A 7464752-C-A **
7344713-T-A 7476672-T-A **
7347597-C-T 7479556-C-T **
7381875-A-G 7513834-A-G **
7381883-G-T 7513842-G-T **
7464050-A-G 7596009-A-G IR1_L **
7629952-C-A 7761911-C-A **
7896967-T-A 8028926-T-A **
7923863-C-A 8055822-C-A **
7965576-C-A 8097535-C-A **
7967374-G-T 8099333-G-T **
7967421-T-A 8099380-T-A **
7967466-T-A 8099425-T-A **
7990570-G-T 8122529-G-T **
7996042-C-A 8128001-C-A **
8062216-C-A 8194175-C-A **
8379605-G-A 8511564-G-A **
8408473-G-A 8540432-G-A **
8692595-C-A 8824554-C-A **
8723770-T-G 8855729-T-G **
8723891-C-A 8855850-C-A **
8723901-T-C 8855860-T-C **
8807441-A-G 8939400-A-G **
8816637-G-C 8948596-G-C **
8851705-T-A 8983664-T-A **
8913246-C-A 9045205-C-A **
9118204-G-T **
9118214-G-T **
9118224-G-T **
9118235-G-T **
9118236-G-T **
9125445-TTC-T **
8988245-G-A 9150636-G-A **
9498972-T-A 9661363-T-A **
9511705-G-T 9674096-G-T **
9535170-T-C 9697561-T-C IR3_Prx **
9634374-C-CACAT 9796765-C-CACAT IR3_Prx 6×AAAT**
9666476-G-A 9828867-G-A IR3_Prx **
9727156-A-C 9889547-A-C IR3_Prx **
9825888-T-C 9988279-T-C **
9899908-T-C 10062299-T-C **
9928909-G-T 10091300-G-T **
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9953359-G-T 10115750-G-T **
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17503308-G-T 15391428-G-T Y71789 **
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17621443-C-A 15509563-C-A **
17643293-G-A 15531413-G-A **
17701632-G-T 15589752-G-T **
17703279-G-A 15591399-G-A **
17707226-A-C 15595346-A-C **
17813225-T-A 15701345-T-A **
17930764-C-A 15818884-C-A **
17930958-T-C 15819078-T-C **
17946953-T-G 15835073-T-G **
18071612-A-G 15959732-A-G **
18119719-C-A 16007839-C-A **
18183995-C-A 16072115-C-A **
18186019-G-T 16074139-G-T **
18190331-C-A 16078451-C-A **
18191573-T-C 16079693-T-C **
18191656-C-A 16079776-C-A **
18226268-G-A 16114388-G-A FT89532 **
18270238-A-C 16158358-A-C **
18408740-A-G 16296860-A-G P6_Gap **
18623231-T-G 16511351-T-G **
18707963-C-A 16596083-C-A **
18750021-C-G 16638141-C-G **
18864654-G-A 16752774-G-A **
18948083-A-C 16836203-A-C **
19012552-C-A 16900672-C-A **
19031146-A-T 16919266-A-T **
19031265-C-T 16919385-C-T **
19043177-G-C 16931297-G-C **
19079126-C-A 16967246-C-A **
19097254-G-T 16985374-G-T **
19302303-A-G 17190423-A-G **
19310708-C-G 17198828-C-G **
19310710-T-G 17198830-T-G **
19444212-A-G 17332332-A-G **
19507050-C-A 17395170-C-A **
19512189-A-C 17400309-A-C **
19527149-G-A 17415269-G-A **
19677775-G-T 17565895-G-T P5_Prx **
19815631-G-A 17703751-G-A P5_Prx **
19815642-T-A 17703762-T-A P5_Prx **
19891007-T-C 17779127-T-C P5_Prx **
19910575-G-C 17798695-G-C P5_Prx **
20001144-G-T 17889264-G-T P5_Prx **
20084447-T-C 17972567-T-C P5_Dst **
20084455-T-TCTTG 17972575-T-TCTTG P5_Dst **
20084519-T-TC 17972639-T-TC P5_Dst **
20557597-G-A 18395711-G-A P5_Dst **
20570322-C-A 18408436-C-A P5_Dst **
20824983-C-A 18663097-C-A P4_Gap **
21054514-G-A 18892628-G-A **
21072454-C-T 18910568-C-T **
21118719-A-C 18956833-A-C **
21152265-T-G 18990379-T-G **
21155114-G-T 18993228-G-T **
21162432-G-T 19000546-G-T **
21371435-C-A 19209549-C-A **
21380524-A-G 19218638-A-G **
21421424-C-A 19259538-C-A **
21583798-G-A 19421912-G-A **
21678168-A-C 19516282-A-C **
21697387-C-A 19535501-C-A **
21789898-C-A 19628012-C-A **
21984131-C-A 19822245-C-A **
22040977-C-A 19879091-C-A **
22097143-A-G 19935257-A-G **
22132474-C-A 19970588-C-A A15845 **
22170277-C-A 20008391-C-A **
22170371-T-A 20008485-T-A **
22263954-C-A 20102068-C-A DYZ19 **
22359532-T-G 20197646-T-G DYZ19 **
22426258-G-C 20264372-G-C DYZ19 **
22542808-C-A 20380922-C-A **
22593829-G-T 20431943-G-T **
22593883-G-A 20431997-G-A **
22593905-T-G 20432019-T-G **
22602318-A-T 20440432-A-T **
22615170-A-G 20453284-A-G **
22659507-G-T 20497621-G-T FTB53550 **
22659512-G-T 20497626-G-T **
22840300-G-T 20678414-G-T **
22856338-G-T 20694452-G-T **
22877466-C-A 20715580-C-A **
22877515-C-A 20715629-C-A **
22949845-A-G 20787959-A-G **
22965493-G-T 20803607-G-T Y110245 **
22965515-T-A 20803629-T-A **
23008382-G-T 20846496-G-T **
23038241-C-A 20876355-C-A **
23104769-G-C 20942883-G-C **
23111680-C-A 20949794-C-A F25805 **
23184782-C-A 21022896-C-A **
23193134-C-A 21031248-C-A **
23261313-T-A 21099427-T-A **
23261372-C-G 21099486-C-G **
23286676-C-A 21124790-C-A **
23337185-T-C 21175299-T-C **
23341522-C-A 21179636-C-A **
23341781-C-G 21179895-C-G **
23421066-G-TTT 21259180-G-TTT **
23421076-C-T 21259190-C-T **
23465436-C-A 21303550-C-A **
23600468-T-C 21438582-T-C **
23672434-C-A 21510548-C-A **
23672448-C-T 21510562-C-T **
23723111-A-C 21561225-A-C **
23790126-G-C 21628240-G-C **
23818916-G-C 21657030-G-C **
23831415-C-A 21669529-C-A **
23831425-G-A 21669539-G-A **
21752715-C-A **
24280866-A-C 22134719-A-C P3_t1 **
24403733-C-A 22257586-C-A **
24931635-G-T 22785488-G-T g1 **
25530766-T-C 23384619-T-C P1_gr1 **
25530855-C-A 23384708-C-A P1_gr1 **
25940182-G-T 23794035-G-T P1_Y1 **
25940194-G-T 23794047-G-T P1_Y1 **
25940196-G-C 23794049-G-C P1_Y1 **
26032896-G-C 23886749-G-C P1_Y1 **
26066362-T-TC 23920215-T-TC P1_Y1 **
26170379-A-T 24024232-A-T P1_Y1 **
26908742-G-T 24762595-G-T P1_r3 **
27423646-T-C 25277499-T-C P1_g3 **
27540919-C-CAG 25394772-C-CAG P1_Y2 **
27665357-T-TAC 25519210-T-TAC P1_Y2 **
28441403-G-A 26295256-G-A P1_gr2 **
28496361-AAAAAA-G 26350214-AAAAAA-G **
28511058-T-G 26364911-T-G **
28523946-G-T 26377799-G-T **
28529764-G-T 26383617-G-T **
28529768-G-T 26383621-G-T **
28529774-GAATAGTCT-G 26383627-GAATAGTCT-G **
28543074-A-G 26396927-A-G **
28551511-C-A 26405364-C-A **
28610326-G-A 26464179-G-A **
28624599-T-A 26478452-T-A **
28631500-C-A 26485353-C-A **
28654076-A-C 26507929-A-C **
28674889-T-C 26528742-T-C **
28698797-C-A 26552650-C-A **
28714971-T-C 26568824-T-C **
28742402-G-A 26596255-G-A **
28760158-G-T 26614011-G-T **
28761433-G-T 26615286-G-T **
28792941-G-C 26646794-G-C **
56838139-G-T **
56845385-T-G **
56849616-C-A **
56855004-C-A **
56855009-G-T **
56858134-G-T **
56867881-C-A **
56868078-C-A **
56879689-T-C **
12815-A-T **
12821-A-T **
12901-G-T **
12906-A-G **
12910-A-C **
9952611-C-A 10115002-C-A ***
13299685-CG-C 11144009-CG-C ***
13805255-T-A 11684549-T-A ***
9292541-T-C 9454932-T-C ***
7046076-C-A 7178035-C-A ***
13697670-TTCAAATGGAATGGAATGCAA-T 11541994-TTCAAATGGAATGGAATGCAA-T ***
13805256-C-T 11684550-C-T ***
22254814-T-G 20092928-T-G DYZ19 ***
22289941-C-T 20128055-C-T DYZ19 ***
24149170-A-G 22003023-A-G P3_b1 ***
24183865-CT-C 22037718-CT-C P3_b1 ***
24656197-A-G 22510050-A-G P3_b2 ***
25009171-G-A 22863024-G-A g1 ***
25758462-A-G 23612315-A-G P1_b3 ***
25942851-A-G 23796704-A-G P1_Y1 ***
26000911-G-A 23854764-G-A P1_Y1 ***
26222319-C-T 24076172-C-T P1_Y1 ***
11020123-C-G ***
10799437-A-C,T ***
10750006-C-A ***
14502043-C-A 12390248-C-A ***
10760399-C-T ***
10665090-TTTCCA-T ***
17503844-AT-A 15391964-AT-A ***
3116181-C-A 3248140-C-A ***
7095894-C-A 7227853-C-A ***
13488998-C-A 11333322-C-A ***
10880512-A-C ***
10880513-A-G ***
23572604-C-T 21410718-C-T ***
13880942-C-A 11760236-C-A FT281257 ***
5011272-C-A 5143231-C-A ***
8649769-C-A 8781728-C-A ***
9674971-T-C 9837362-T-C IR3_Prx ***
10657194-G-T ***
10663734-C-A ***
10668758-T-C ***
10776515-TCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATA-T ***
10839959-T-C,G ***
10880521-C-CA ***
10930161-T-C ***
10964212-C-A ***
11014303-A-G ***
13895891-G-T 11775185-G-T ***
13946249-G-T 11825543-G-T ***
14422088-C-A 12301363-C-A ***
14497387-T-TG 12385592-T-TG ***
15034875-G-A 12922963-G-A ***
16689640-C-A 14577760-C-A ***
20640281-C-A 18478395-C-A P4_Prx ***
20842517-G-GGAAA,GGAAAGAAA 18680631-G-GGAAA,GGAAAGAAA P4_Dst 14×GAAA***
22253052-C-T 20091166-C-T DYZ19 ***
23415380-G-T 21253494-G-T ***
24218-C-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.