Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF41/S524 > FGC8622 > FGC8621 > Z17585

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
14525569-C-G 12413770-C-G FGC8632 Y+
23427980-G-A 21266094-G-A FGC8657 YY+
8035943-A-C 8167902-A-C FGC8623 YY+
14488396-A-G 12367665-A-G FGC8631 YY+
18409707-C-A 16297827-C-A FGC8639 P6_Gap +
14175051-G-A 12054345-G-A FGC8630 YY+
14155210-C-T 12034504-C-T FGC8629 Y+
18770427-G-A 16658547-G-A FGC8641 YY+
4491143-G-T 4623102-G-T FGC8613 +
23098176-G-T 20936290-G-T FGC8654 YY+
2942364-T-C 3074323-T-C FGC8609 +
22632220-T-A 20470334-T-A FGC8653 Y+
22190892-C-A 20029006-C-A FGC8650 YY+
22460628-G-T 20298742-G-T FGC8651 DYZ19 +
19384927-C-A 17273047-C-A FGC8644 Y+
19027096-G-A 16915216-G-A **
8043954-C-CTG 8175913-C-CTG **
13435837-G-A 11280161-G-A **
19027101-C-T 16915221-C-T **
9735605-G-GTTTTTT 9897996-G-GTTTTTT IR3_Prx 30×T**
19027163-T-C 16915283-T-C **
13567025-A-G 11411349-A-G **
3902537-T-TTTTA 4034496-T-TTTTA **
15712234-C-T 13600354-C-T **
15712232-C-T 13600352-C-T Y41109 **
19027143-G-T 16915263-G-T **
14257649-T-C 12136943-T-C **
22337650-C-A 20175764-C-A DYZ19 **
13567070-G-C 11411394-G-C **
13419135-A-G 11263459-A-G **
21556919-C-CTTTTTT 19395033-C-CTTTTTT 23×T**
19027121-T-C 16915241-T-C **
58846525-G-T 56744346-C-A ***
58847176-C-A 56743695-G-T ***
58846521-T-A 56744350-A-T ***
58845635-T-C 56745236-A-G ***
58848444-A-T 56742427-T-A ***
58847779-C-T 56743092-G-A ***
58848079-C-T 56742792-G-A ***
58848420-A-C 56742451-T-G ***
58848435-G-C 56742436-C-G ***
58843741-T-A 56747130-A-T ***
58855004-A-T 56735867-T-A ***
58855034-A-T 56735837-T-A ***
58855044-T-A 56735827-A-T ***
58855046-C-A 56735825-G-T ***
58855150-T-A 56735721-A-T ***
58855153-C-A 56735718-G-T ***
58844840-C-A 56746031-G-T ***
58858865-C-T 56732006-G-A 10×CCATT***
58843549-A-C 56747322-T-G ***
25628755-C-T 23482608-C-T P1_b3 ***
27972820-A-T 25826673-A-T P1_Y2 ***
27852722-T-A 25706575-T-A P1_Y2 ***
27402687-A-T 25256540-A-T P1_g3 ***
26499707-C-G 24353560-C-G P1_Y1 ***
26499688-C-T 24353541-C-T P1_Y1 ***
26306169-C-A 24160022-C-A P1_Y1 ***
25557277-A-T 23411130-A-T P1_gr1 ***
28004773-C-A 25858626-C-A P1_Y2 ***
25543443-T-A 23397296-T-A P1_gr1 ***
25444404-C-T 23298257-C-T P2_r2 ***
24895672-T-A 22749525-T-A g1 ***
24588211-G-T 22442064-G-T P3_t2 ***
24579928-C-A 22433781-C-A P3_t2 ***
24288443-G-A 22142296-G-A P3_t1 ***
23077727-T-A 20915841-T-A ***
28004772-T-A 25858625-T-A P1_Y2 ***
28004776-G-T 25858629-G-T P1_Y2 ***
58843260-C-A 56747611-G-T ***
58820220-C-T 56770651-G-A ***
58841167-T-C 56749704-A-G ***
58840584-A-T 56750287-T-A ***
58866452-A-C 56724419-T-G ***
58840540-A-T 56750331-T-A ***
58836328-G-T 56754543-C-A ***
58831340-C-T 56759531-G-A ***
28819318-A-G 26673171-A-G ***
28004787-C-A 25858640-C-A P1_Y2 ***
28491030-G-T 26344883-G-T ***
28451918-C-T 26305771-C-T P1_gr2 ***
28442799-A-T 26296652-A-T P1_gr2 ***
28442760-G-A 26296613-G-A P1_gr2 ***
28423936-T-C 26277789-T-C P1_gr2 ***
28058615-A-T 25912468-A-T P1_Y2 ***
28004791-C-A 25858644-C-A P1_Y2 ***
58840565-T-C 56750306-A-G ***
58912478-C-G 56678393-G-C ***
58870608-C-T 56720263-G-A ***
22342845-ATCC-GTCT 20180959-ATCC-GTCT DYZ19 ***
26499685-CTTC-TTTT 24353538-CTTC-TTTT P1_Y1 ***
25709386-G-GTTTTTT 23563239-G-GTTTTTT P1_b3 31×T***
25200983-GAAGGAAGA-G 23054836-GAAGGAAGA-G g1 ***
22440307-A-AGC 20278421-A-AGC DYZ19 ***
28819286-GATTCC-G 26673139-GATTCC-G ***
22309319-CT-GA 20147433-CT-GA DYZ19 ***
22309281-GCTCCA-TCTGCG 20147395-GCTCCA-TCTGCG DYZ19 ***
22244848-TA-GT 20082962-TA-GT DYZ19 ***
21306590-C-CAAAAAA 19144704-C-CAAAAAA 27×A***
20541541-A-ATTT 18379655-A-ATTT P5_Dst ***
20541524-ATAT-GTAA 18379638-ATAT-GTAA P5_Dst ***
27617980-C-CAAAAAAA 25471833-C-CAAAAAAA P1_Y2 29×A***
28819297-AGTG-TGTA 26673150-AGTG-TGTA ***
19845917-AT-A 17734037-AT-A P5_Prx 23×T***
6699020-A-ATTTTTTTTTT 6830979-A-ATTTTTTTTTT 24×T***
22273612-ATTAA-CTT 20111726-ATTAA-CTT DYZ19 ***
20541513-TAATT-A 18379627-TAATT-A P5_Dst ***
19027101-CAC-TACA 16915221-CAC-TACA ***
58916504-GGC-TGT 56674365-GCC-ACA ***
28819323-AT-GA 26673176-AT-GA ***
58876845-TATC-CATT 56714023-GATA-AATG ***
58861980-AT-CA 56728890-AT-TG ***
58849238-CATTTT-TATTCA 56741628-AAAATG-TGAATA ***
58838987-CTCCA-ATCCT 56751880-TGGAG-AGGAT ***
28819330-AGAT-GGAG 26673183-AGAT-GGAG ***
19469873-C-CCTCT 17357993-C-CCTCT ***
58874581-T-G 56716290-A-C ***
22243595-GTA-ATG 20081709-GTA-ATG DYZ19 ***
3256138-A-AT 3388097-A-AT 15×T***
20129006-C-CA 18017126-C-CA P5_Dst 11×A***
13472205-GA-CC 11316529-GA-CC ***
23317649-C-CTTTTTTT 21155763-C-CTTTTTTT 37×T***
28491014-AC-A 26344867-AC-A ***
5308778-C-CTATATATA 5440737-C-CTATATATA 11×TA***
58912998-C-T 56677873-G-A ***
3039839-CTTTTTTT-C 3171798-CTTTTTTT-C 22×T***
58912989-T-A 56677882-A-T ***
58912983-C-A 56677888-G-T ***
22491445-T-G 20329559-T-G DYZ19 ***
58912474-A-T 56678397-T-A ***
58909150-G-T 56681721-C-A ***
58876842-C-T 56714029-G-A ***
58876426-A-T 56714445-T-A ***
22337817-AG-GT 20175931-AG-GT DYZ19 ***
3902526-AA-TT 4034485-AA-TT ***
19187385-A-ATTTTTTTT 17075505-A-ATTTTTTTT 28×T***
18756798-G-GTTT 16644918-G-GTTT 19×T***
16167253-AA-TG 14055373-AA-TG P8_Dst ***
15712232-CTC-TTT 13600352-CTC-TTT ***
14989210-ACTCTGT-A 12877276-ACTCTGT-A ***
13531753-C-CAAAAAAA 11376077-C-CAAAAAAA 23×A***
13468892-TC-AA 11313216-TC-AA ***
4446635-T-TA 4578594-T-TA 27×A***
13314327-GT-AC 11158651-GT-AC ***
10022245-AGAGGC-GGAGCA 10184636-AGAGGC-GGAGCA ***
9302429-GA-AC 9464820-GA-AC ***
5550280-G-GTTTTTT 5682239-G-GTTTTTT 39×T***
4738902-GGATA-G 4870861-GGATA-G ***
22500368-T-C 20338482-T-C DYZ19 ***
22330036-T-C 20168150-T-C DYZ19 ***
22488739-A-G 20326853-A-G DYZ19 ***
5065343-T-A 5197302-T-A ***
13463391-C-T 11307715-C-T ***
22342343-G-C 20180457-G-C DYZ19 ***
22263730-C-A 20101844-C-A DYZ19 ***
5225125-T-G 5357084-T-G ***
3512029-C-T 3643988-C-T ***
3902525-G-T 4034484-G-T ***
3902526-A-T 4034485-A-T ***
3902527-A-T 4034486-A-T ***
4682251-C-T 4814210-C-T ***
4738909-A-C 4870868-A-C ***
4738912-A-G 4870871-A-G ***
4738942-G-T 4870901-G-T ***
5009288-G-T 5141247-G-T ***
5009300-G-C 5141259-G-C ***
5081207-G-A 5213166-G-A ***
58856304-T-G 56734567-A-C ***
6015315-G-T 6147274-G-T ***
6289439-G-T 6421398-G-T IR3_Dst ***
6309080-G-A 6441039-G-A IR3_Dst ***
6329016-T-A 6460975-T-A IR3_Dst ***
6496614-A-C 6628573-A-C ***
6496620-T-C 6628579-T-C ***
7120154-G-A 7252113-G-A ***
9302429-G-A 9464820-G-A ***
9302430-A-C 9464821-A-C ***
9350090-C-T 9512481-C-T FGC46095 ***
9731616-G-T 9894007-G-T IR3_Prx 17×T***
10009441-C-T 10171832-C-T ***
10025644-A-C 10188035-A-C ***
10090416-G-C 10252807-G-C ***
9938851-A-T 10101242-A-T ***
13475958-G-T 11320282-G-T ***
13120420-A-T 10609906-A-T ***
20541524-A-G 18379638-A-G P5_Dst ***
28794963-CT-C 26648816-CT-C ***
23801733-C-CAAAAAAA 21639847-C-CAAAAAAA 31×A***
10090739-A-C 10253130-A-C ***
10090697-A-C 10253088-A-C ***
18333761-G-T 16221881-G-T P6_Prx ***
22244987-A-G 20083101-A-G DYZ19 ***
22337597-A-T 20175711-A-T DYZ19 ***
20540961-G-A 18379075-G-A P5_Dst ***
22268224-G-T 20106338-G-T DYZ19 ***
22268231-G-C 20106345-G-C DYZ19 ***
22337619-C-T 20175733-C-T DYZ19 ***
22360553-A-T 20198667-A-T DYZ19 ***
22361407-A-T 20199521-A-T DYZ19 ***
9951397-C-T 10113788-C-T ***
20541527-T-A 18379641-T-A P5_Dst ***
58847681-T-G 56743190-A-C ***
18218791-T-G 16106911-T-G ***
22337643-A-C 20175757-A-C DYZ19 ***
22337584-T-A 20175698-T-A DYZ19 ***
13467903-G-C 11312227-G-C ***
13508841-A-G 11353165-A-G ***
23121023-G-A 20959137-G-A F25827 ***
27791989-T-G 25645842-T-G P1_Y2 ***
13255809-T-G 11100133-T-G 12×G***
20541548-T-A 18379662-T-A P5_Dst ***
13374277-G-A 11218601-G-A 13×A***
58820332-CATTCA-C 56770529-GGAATT-G ***
58844807-A-T 56746064-T-A ***
22342970-T-G 20181084-T-G DYZ19 ***
22342963-A-G 20181077-A-G DYZ19 ***
20541573-T-C 18379687-T-C P5_Dst ***
10090641-G-C 10253032-G-C ***
13120469-C-G 10609955-C-G ***
22488706-T-A 20326820-T-A DYZ19 ***
22309313-T-G 20147427-T-G DYZ19 ***
20541626-C-T 18379740-C-T P5_Dst ***
20569688-T-C 18407802-T-C P5_Dst ***
20701344-C-A 18539458-C-A P4_Prx ***
22235007-C-A 20073121-C-A DYZ19 ***
22235008-T-G 20073122-T-G DYZ19 ***
22235010-C-A 20073124-C-A DYZ19 ***
22241322-G-A 20079436-G-A DYZ19 ***
22245015-C-T 20083129-C-T DYZ19 ***
22248262-A-T 20086376-A-T DYZ19 ***
22257283-A-T 20095397-A-T DYZ19 ***
22257287-A-T 20095401-A-T DYZ19 ***
22268217-T-A 20106331-T-A DYZ19 ***
22309281-G-T 20147395-G-T DYZ19 ***
22309286-A-G 20147400-A-G DYZ19 ***
22309326-G-A 20147440-G-A DYZ19 ***
20541578-T-C 18379692-T-C P5_Dst ***
22309351-G-A 20147465-G-A DYZ19 ***
22312143-G-A 20150257-G-A DYZ19 ***
22330026-G-C 20168140-G-C DYZ19 ***
22504592-G-C 20342706-G-C DYZ19 ***
22337286-G-C 20175400-G-C DYZ19 ***
22341150-T-A 20179264-T-A DYZ19 ***
22342926-C-T 20181040-C-T DYZ19 ***
22353014-T-G 20191128-T-G DYZ19 ***
22360311-G-T 20198425-G-T DYZ19 ***
22360319-C-T 20198433-C-T DYZ19 ***
22362680-G-C 20200794-G-C DYZ19 ***
22364734-G-T 20202848-G-T DYZ19 ***
22420422-G-T 20258536-G-T DYZ19 ***
22420440-A-T 20258554-A-T DYZ19 ***
20541612-C-T 18379726-C-T P5_Dst ***
20540692-C-T 18378806-C-T P5_Dst ***
13256627-G-C 11100951-G-C ***
16068544-A-G 13956664-A-G ***
13257301-T-A 11101625-T-A ***
13281240-G-A 11125564-G-A ***
13358612-G-A 11202936-G-A ***
13468657-G-T 11312981-G-T ***
13484506-G-A 11328830-G-A ***
13485045-G-A 11329369-G-A ***
13485046-A-T 11329370-A-T ***
13485439-G-T 11329763-G-T ***
13488099-C-A 11332423-C-A ***
13696864-G-A 11541188-G-A ***
13723564-G-A 11567888-G-A ***
13723565-T-A 11567889-T-A ***
14057098-C-G 11936392-C-G ***
14260929-A-T 12140223-A-T ***
16167253-A-T 14055373-A-T P8_Dst ***
20540675-C-A 18378789-C-A P5_Dst ***
19660540-G-T 17548660-G-T P5_Prx ***
20399224-A-T 18237338-A-T P5_Dst ***
20399209-G-A 18237323-G-A P5_Dst ***
20399200-G-A 18237314-G-A P5_Dst ***
20045242-A-G 17933362-A-G P5_Prx ***
19660595-C-A 17548715-C-A P5_Prx ***
19660560-G-A 17548680-G-A P5_Prx ***
19660536-C-T 17548656-C-T P5_Prx ***
16167254-A-G 14055374-A-G P8_Dst ***
19437418-G-A 17325538-G-A ***
19437414-T-A 17325534-T-A ***
19437405-G-A 17325525-G-A ***
18878801-A-G 16766921-A-G ***
18333689-T-A 16221809-T-A P6_Prx ***
17466873-G-T 15354993-G-T ***
13129662-T-TC 10619148-T-TC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: UFG6K*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs117
Variant counts last updated 2018-07-08 20:58:21.

* BED data not available. Using default values.

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