Henderson

BigY2: 232800, FTDNA: 232800, YFull-BigY: YF01926
MDKA Birth: Scotland 1670

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > Z150 > CTS9490 > S7404 > A8452

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
232800		FTDNA
232800
25985387-C-T 23839240-C-T P1_Y1 10×TA*
19678737-G-C 17566857-G-C P5_Prx A*
18272557-G-C 16160677-G-C P6_Prx A****
19606719-T-C 17494839-T-C P5_Prx YA****
19882155-G-T 17770275-G-T P5_Prx A****
28817871-G-T 26671724-G-T A*
20798770-T-A 18636884-T-A P4_Prx A*
6267692-A-G 6399651-A-G IR3_Dst A*
20673802-G-T 18511916-G-T P4_Prx A*
26161186-C-T 24015039-C-T P1_Y1 A*
6106061-C-A 6238020-C-A 20×AA*
22460464-G-C 20298578-G-C BY43898 DYZ19 ++
21872744-C-T 19710858-C-T Y43586 YY++
22242991-G-C 20081105-G-C DYZ19 +
22459960-A-T 20298074-A-T BY43892 DYZ19 ++
24418815-C-CT 22272668-C-CT 9×T++
16711960-T-TTC 14600080-T-TTC *+
22663563-G-T 20501677-G-T Y43888 YY++
22977362-C-A 20815476-C-A BY44158 YY++
16388373-G-A 14276493-G-A Y3842 Z19994 YY++
23007478-A-G 20845592-A-G BY142286 Y+**
23012522-C-T 20850636-C-T Y44083 YY++
14959463-G-C 12847538-G-C Y40755 YY+
22608786-G-A 20446900-G-A Y43860 YY++
16967786-T-C 14855906-T-C Y41771 YY++
15840225-A-T 13728345-A-T Y41199 YY++
9771228-A-G 9933619-A-G Y40049 Y++
13720447-C-G 11564771-C-G ++
21549228-T-G 19387342-T-G Y43408 YY+
15488295-G-A 13376415-G-A Y41005 YY++
7356741-A-G 7488700-A-G Y38932 YY++
8331613-A-G 8463572-A-G Y39451 YY++
7286331-C-G 7418290-C-G BY42705 YY++
14370937-A-G 12250233-A-G Y40486 YY++
15389445-G-T 13277565-G-T Y40957 YY++
13716841-T-A 11561165-T-A BY43232 ++
21882000-G-T 19720114-G-T YY****
19021026-CTT-C,CT 16909146-CTT-C,CT 15×T*
8125060-GAG-G,GAGAGA 8257019-GAG-G,GAGAGA *
14237195-G-T 12116489-G-T YY*
22438257-T-A 20276371-T-A DYZ19 ****
17274955-TAGATAGAC-T,TAGATAGAT 15163075-TAGATAGAC-T,TAGATAGAT *
17203392-G-A 15091512-G-A **
17203395-G-T 15091515-G-T **
17203414-G-C 15091534-G-C **
17203425-C-T 15091545-C-T **
17203390-T-C 15091510-T-C **
17203391-G-A 15091511-G-A **
17203433-C-A 15091553-C-A **
17175110-G-T 15063230-G-T **
17203436-C-G 15091556-C-G **
17242129-C-G 15130249-C-G **
8911-C-G **
17142175-C-A 15030295-C-A **
17071225-AG-A 14959345-AG-A **
17071215-G-GA 14959335-G-GA **
17030621-C-A 14918741-C-A **
16920086-C-A 14808206-C-A **
16920085-C-T 14808205-C-T **
16920073-A-G 14808193-A-G **
16881393-C-A 14769513-C-A **
16848558-C-G 14736678-C-G Y97474 **
16743129-G-T 14631249-G-T **
16705579-C-T 14593699-C-T **
16667255-C-A 14555375-C-A **
16602675-C-A 14490795-C-A **
16998407-C-A 14886527-C-A **
17757635-G-A 15645755-G-A **
17306859-C-A 15194979-C-A **
17757663-T-C 15645783-T-C **
18707255-C-A 16595375-C-A **
18673855-C-A 16561975-C-A **
18634888-C-A 16523008-C-A **
18621732-C-A 16509852-C-A **
18546979-C-A 16435099-C-A **
18528883-A-G 16417003-A-G P6_Dst **
18447657-A-T 16335777-A-T P6_Dst **
18223898-C-A 16112018-C-A **
18191750-G-T 16079870-G-T **
18120977-C-A 16009097-C-A **
17889840-C-A 15777960-C-A **
17883834-C-A 15771954-C-A **
17882812-G-T 15770932-G-T **
17770391-C-A 15658511-C-A **
17757651-A-T 15645771-A-T **
17369239-C-A 15257359-C-A **
17757649-A-G 15645769-A-G **
16336858-C-T 14224978-C-T **
17757630-T-C 15645750-T-C **
17726287-A-G 15614407-A-G **
17648574-G-C 15536694-G-C **
17648569-A-C 15536689-A-C **
17648566-G-T 15536686-G-T **
17648560-G-T 15536680-G-T **
17638303-C-A 15526423-C-A **
17567280-C-A 15455400-C-A **
17561552-C-A 15449672-C-A **
17538261-G-T 15426381-G-T **
17470876-C-A 15358996-C-A **
17444756-C-A 15332876-C-A FGC47275 **
16431033-C-A 14319153-C-A **
14698346-C-A 12586412-C-A **
16272750-C-A 14160870-C-A **
14099751-C-A 11979045-C-A **
14300822-C-A 12180116-C-A **
14284087-T-C 12163381-T-C FT61410 **
14281171-C-G 12160465-C-G **
14281145-A-T 12160439-A-T **
14251557-G-A 12130851-G-A **
14242074-G-T 12121368-G-T **
14230147-C-G 12109441-C-G **
14230115-T-G 12109409-T-G **
14230089-C-T 12109383-C-T **
14228583-C-A 12107877-C-A **
14205005-G-T 12084299-G-T **
14204991-C-T 12084285-C-T **
14200482-C-A 12079776-C-A **
14043928-G-T 11923222-G-T **
14351266-G-T 12230561-G-T **
14042670-A-G 11921964-A-G **
14023055-C-A 11902349-C-A **
14023022-C-A 11902316-C-A **
14013716-C-A 11893010-C-A **
13964126-G-T 11843420-G-T **
13947110-C-A 11826404-C-A **
13936952-C-A 11816246-C-A **
13936517-C-A 11815811-C-A **
13934874-G-T 11814168-G-T **
13916151-G-T 11795445-G-T **
13913351-C-A 11792645-C-A **
13913345-T-G 11792639-T-G **
13913338-C-A 11792632-C-A **
13913331-T-A 11792625-T-A **
14313693-A-G 12192987-A-G **
14351297-G-T 12230592-G-T **
16232528-A-G 14120648-A-G **
14698290-T-C 12586356-T-C **
16211123-A-G 14099243-A-G **
16067259-G-T 13955379-G-T **
16045809-CCAG-C 13933929-CCAG-C **
16008736-C-A 13896856-C-A **
15971715-G-T 13859835-G-T **
15940226-G-A 13828346-G-A **
15926828-T-A 13814948-T-A **
15391262-C-A 13279382-C-A **
15276533-C-A 13164622-C-A **
15239553-C-A 13127639-C-A **
15171555-A-G 13059641-A-G **
15065898-C-A 12953990-C-A **
14909609-G-A 12797676-G-A **
14761337-A-G 12649406-A-G **
14654233-C-A 12542298-C-A **
14355204-T-A 12234499-T-A **
14584743-C-A 12472943-C-A **
14556566-C-A 12444767-C-A **
14539268-G-A 12427469-G-A FGC40662 **
14509357-T-G 12397562-T-G **
14501114-C-A 12389319-C-A **
14495705-T-A 12383902-T-A **
14485269-G-T 12364538-G-T **
14473093-G-T 12352362-G-T **
14467316-G-C 12346585-G-C **
14446471-C-A 12325744-C-A **
14442876-C-A 12322149-C-A BY187095 **
14397326-A-G 12276622-A-G **
14390020-T-C 12269316-T-C **
14356992-C-A 12236287-C-A BY95164 **
18755018-G-T 16643138-G-T **
19376352-T-C 17264472-T-C **
18810871-C-A 16698991-C-A **
23199702-C-A 21037816-C-A **
24445364-A-G 22299217-A-G **
24353294-C-CGGG 22207147-C-CGGG P3_t1 **
24353292-C-G 22207145-C-G P3_t1 **
24333282-T-C 22187135-T-C P3_t1 **
24016987-T-TTC 21870840-T-TTC **
23773432-G-T 21611546-G-T **
23529028-C-A 21367142-C-A **
23411470-C-T 21249584-C-T **
23411383-G-A 21249497-G-A **
23398269-T-C 21236383-T-C **
23356597-C-A 21194711-C-A **
23306039-C-A 21144153-C-A **
23264093-C-A 21102207-C-A **
23119984-C-A 20958098-C-A **
26025649-A-T 23879502-A-T P1_Y1 **
23009316-A-T 20847430-A-T **
22995372-C-A 20833486-C-A **
22989967-C-A 20828081-C-A **
22970151-G-A 20808265-G-A **
22965179-A-G 20803293-A-G **
22809241-G-A 20647355-G-A **
22703588-T-A 20541702-T-A **
22662073-C-T 20500187-C-T **
22622453-T-G 20460567-T-G **
22622448-T-G 20460562-T-G **
22622436-AG-A 20460550-AG-A **
22542482-C-A 20380596-C-A **
22541088-G-A 20379202-G-A **
26010237-G-T 23864090-G-T P1_Y1 **
26025668-C-T 23879521-C-T P1_Y1 **
22301587-C-CAG 20139701-C-CAG DYZ19 **
28661741-C-A 26515594-C-A **
8910-C-A **
56877914-T-C **
56877898-T-C **
56858676-A-T **
56839365-C-T **
56839319-C-T **
56833215-C-A **
56830310-TG-C **
56823931-G-T **
28774497-A-T 26628350-A-T **
28762595-C-A 26616448-C-A **
28701314-T-G 26555167-T-G **
28680911-T-G 26534764-T-G **
28658583-A-G 26512436-A-G **
26080935-A-AT 23934788-A-AT P1_Y1 **
28618330-C-A 26472183-C-A **
28614286-G-A 26468139-G-A **
28544450-C-A 26398303-C-A **
28519629-C-A 26373482-C-A **
27829286-T-C 25683139-T-C P1_Y2 **
27709978-A-AC 25563831-A-AC P1_Y2 **
27525278-A-G 25379131-A-G P1_Y2 **
27035126-C-A 24888979-C-A P1_r4 **
26626436-C-A 24480289-C-A P1_g2 **
26113210-A-G 23967063-A-G P1_Y1 **
26080962-A-G 23934815-A-G P1_Y1 **
26080959-G-T 23934812-G-T P1_Y1 **
26080955-A-T 23934808-A-T P1_Y1 **
26080944-G-T 23934797-G-T P1_Y1 **
22303617-C-A 20141731-C-A DYZ19 **
22204539-G-T 20042653-G-T **
18817793-C-A 16705913-C-A **
19339408-C-T 17227528-C-T **
19739819-T-A 17627939-T-A P5_Prx **
19739347-A-AACAACG 17627467-A-AACAACG P5_Prx **
19622018-G-A 17510138-G-A P5_Prx **
19597108-G-T 17485228-G-T P5_Prx **
19531345-C-A 17419465-C-A **
19510055-C-A 17398175-C-A **
19507096-A-G 17395216-A-G **
19479919-C-A 17368039-C-A **
19448359-T-C 17336479-T-C **
19448325-A-T 17336445-A-T **
19399980-C-A 17288100-C-A **
13885970-C-T 11765264-C-T **
19376347-C-CA 17264467-C-CA **
19339404-A-G 17227524-A-G **
19934402-A-G 17822522-A-G P5_Prx **
19293619-C-T 17181739-C-T **
19250299-C-T 17138419-C-T **
19127727-A-G 17015847-A-G **
19127726-T-C 17015846-T-C **
19125202-C-A 17013322-C-A **
19121747-C-A 17009867-C-A **
19075018-C-A 16963138-C-A YFS2791081 **
19042010-T-C 16930130-T-C **
19041890-G-C 16930010-G-C **
18987264-A-T 16875384-A-T **
18961543-C-A 16849663-C-A **
18928552-T-C 16816672-T-C **
18906412-G-A 16794532-G-A **
19877688-A-C 17765808-A-C P5_Prx **
20096642-A-T 17984762-A-T P5_Dst **
22204522-G-T 20042636-G-T **
21266739-T-A 19104853-T-A **
22203957-T-A 20042071-T-A **
22193781-C-G 20031895-C-G **
22081011-C-T 19919125-C-T **
21888439-C-A 19726553-C-A **
21833933-G-T 19672047-G-T **
21634246-C-A 19472360-C-A **
21584185-C-T 19422299-C-T **
21573888-C-A 19412002-C-A **
21490998-G-T 19329112-G-T **
21368730-T-C 19206844-T-C **
21281706-C-A 19119820-C-A **
21279193-C-A 19117307-C-A **
21268043-C-G 19106157-C-G **
21200246-C-A 19038360-C-A **
20231501-GA-G 18069615-GA-G P5_Dst **
21136658-C-A 18974772-C-A **
21092314-C-A 18930428-C-A **
21037592-C-A 18875706-C-A Y75708 **
20640189-T-A 18478303-T-A P4_Prx **
20582542-A-T 18420656-A-T P5_Dst **
20582534-AT-A 18420648-AT-A P5_Dst **
20582530-C-T 18420644-C-T P5_Dst **
20326069-G-C 18164183-G-C P5_Dst **
20231552-A-G 18069666-A-G P5_Dst **
20231543-GAA-G 18069657-GAA-G P5_Dst **
20231538-AG-A 18069652-AG-A P5_Dst **
20231527-GAA-G 18069641-GAA-G P5_Dst **
20231513-AAG-A 18069627-AAG-A P5_Dst **
20231506-ACC-A 18069620-ACC-A P5_Dst **
13913329-T-A 11792623-T-A **
13803933-A-C 11683227-A-C **
13885968-A-T 11765262-A-T **
3686812-G-T 3818771-G-T **
4258801-T-G 4390760-T-G **
4256915-A-G 4388874-A-G **
4178949-C-A 4310908-C-A **
4138508-G-T 4270467-G-T **
4111424-G-T 4243383-G-T **
4111354-C-A 4243313-C-A **
4103754-C-A 4235713-C-A **
4069152-C-A 4201111-C-A **
4064152-G-T 4196111-G-T **
3982199-T-A 4114158-T-A **
3726299-G-A 3858258-G-A **
3694227-A-G 3826186-A-G **
3681350-G-T 3813309-G-T **
4470614-A-G 4602573-A-G **
3653320-G-T 3785279-G-T **
3653307-G-T 3785266-G-T **
3573524-C-T 3705483-C-T **
3548616-C-A 3680575-C-A **
3415205-C-A 3547164-C-A **
3385167-C-A 3517126-C-A **
3342287-A-AT 3474246-A-AT 10×T**
3286350-G-C 3418309-G-C **
3250804-C-A 3382763-C-A **
3116642-A-C 3248601-A-C **
2984639-GTTCTGTT-G 3116598-GTTCTGTT-G **
2900790-C-A 3032749-C-A **
2899909-G-T 3031868-G-T **
4302046-T-C 4434005-T-C **
4626061-C-A 4758020-C-A **
2791562-C-T 2923521-C-T **
5924411-C-G 6056370-C-G **
7087866-CAGGT-C 7219825-CAGGT-C **
6918491-G-A 7050450-G-A **
6784447-G-C 6916406-G-C **
6516172-C-A 6648131-C-A **
6516102-C-A 6648061-C-A **
6492683-A-G 6624642-A-G FT55650 **
6444859-TACACAC-T 6576818-TACACAC-T **
6260306-C-CGTAA 6392265-C-CGTAA IR3_Dst **
6260304-G-C 6392263-G-C IR3_Dst **
5985856-C-A 6117815-C-A **
5932083-A-T 6064042-A-T **
5932080-A-T 6064039-A-T **
13862409-A-T 11741703-A-T **
4768023-C-A 4899982-C-A **
5820750-C-A 5952709-C-A **
5757121-C-A 5889080-C-A **
5687519-C-A 5819478-C-A **
5409082-T-C 5541041-T-C **
5358562-C-A 5490521-C-A **
5240978-C-T 5372937-C-T 5×CTTT**
5240976-C-T 5372935-C-T **
5240954-C-T 5372913-C-T **
5235306-C-A 5367265-C-A **
5130303-G-T 5262262-G-T **
4999700-C-A 5131659-C-A **
4932036-G-T 5063995-G-T **
4907727-A-T 5039686-A-T **
2814851-C-A 2946810-C-A **
2791441-A-G 2923400-A-G **
7134222-C-A 7266181-C-A **
8824233-C-A 8956192-C-A **
8181441-C-T 8313400-C-T **
13308825-G-C 11153149-G-C **
13898760-T-G 11778054-T-G **
10813021-A-ATCCAC **
19127732-C-A 17015852-C-A **
17363190-C-A 15251310-C-A **
13312938-C-A 11157262-C-A **
28591135-C-A 26444988-C-A **
10022196-C-A 10184587-C-A **
11003747-C-CTA **
11003742-C-A **
10992867-C-A **
8760517-CTTTTTTTTT-C 8892476-CTTTTTTTTT-C 20×T**
10971421-G-C **
21833991-G-T 19672105-G-T **
24400045-G-A 22253898-G-A BY149612 **
14357762-C-A 12237057-C-A Z19072 **
13347219-AT-A 11191543-AT-A 13×T**
21714746-C-A 19552860-C-A **
19206713-T-G 17094833-T-G **
14377913-C-A 12257209-C-A **
23205017-C-A 21043131-C-A **
22965725-C-A 20803839-C-A CTS11121 PF5668 **
17367959-C-A 15256079-C-A CTS7234 Z1555 **
13644193-C-T 11488517-C-T **
18395243-C-A 16283363-C-A P6_Gap **
58985469-G-T 56839322-G-T **
20795927-A-T 18634041-A-T P4_Prx **
10971422-T-C **
2683967-C-T 2815926-C-T FGC37628 **
21926622-C-A 19764736-C-A **
14373526-C-A 12252822-C-A Y49451 **
8911990-G-T 9043949-G-T **
18447665-G-T 16335785-G-T P6_Dst **
22199356-C-A 20037470-C-A **
15400042-C-A 13288162-C-A **
16729478-C-A 14617598-C-A **
16018910-C-A 13907030-C-A **
22542692-C-A 20380806-C-A **
14539276-C-A 12427477-C-A **
23144291-C-A 20982405-C-A **
6998012-C-A 7129971-C-A **
28520649-G-A 26374502-G-A **
22703570-T-G 20541684-T-G **
13445973-C-A 11290297-C-A **
11031726-C-A **
6147470-T-G 6279429-T-G IR3_Dst **
19544606-C-A 17432726-C-A **
15179009-T-C 13067095-T-C **
7188239-C-A 7320198-C-A **
17538462-G-T 15426582-G-T **
23734236-C-A 21572350-C-A **
17946947-A-T 15835067-A-T **
15374540-C-A 13262660-C-A **
5603768-C-A 5735727-C-A **
2768027-G-T 2899986-G-T **
23061781-C-A 20899895-C-A **
8253631-C-A 8385590-C-A **
7125055-C-A 7257014-C-A **
5845902-TAGTACTGGA-T 5977861-TAGTACTGGA-T **
7134676-C-A 7266635-C-A **
7134739-T-TA 7266698-T-TA **
10895777-A-C **
10895763-T-A **
10893653-T-A **
10893644-A-T **
10893639-A-G **
10873270-C-T **
10865138-G-T **
10796666-C-CACTG **
10796663-A-AG **
10795839-T-C **
10795826-A-T **
10756949-T-C **
10895862-A-ACTACC **
10750697-A-T **
10685830-T-C **
10667120-A-C **
10657280-C-A **
10653496-C-A **
10645910-C-A **
10032236-C-G 10194627-C-G **
9978504-C-G 10140895-C-G **
9956364-T-C 10118755-T-C 16×A**
9956363-C-T 10118754-C-T **
9942227-T-G 10104618-T-G **
10895802-ATTCCG-A **
10895872-A-T **
9916390-G-T 10078781-G-T **
13504143-C-A 11348467-C-A **
13862390-A-G 11741684-A-G **
13848089-A-G 11727383-A-G **
7176050-C-A 7308009-C-A **
11651357-C-A **
11648620-A-T **
13644198-A-T 11488522-A-T **
13644180-A-G 11488504-A-G **
13644168-AATG-A 11488492-AATG-A **
13644168-A-C 11488492-A-C **
13644164-A-G 11488488-A-G **
13588243-C-A 11432567-C-A **
13482554-C-A 11326878-C-A **
10913219-G-T **
13402593-A-T 11246917-A-T **
13256213-A-T 11100537-A-T **
13237518-C-A 11081842-C-A **
13228219-C-T 11072543-C-T **
13225566-C-A 11069890-C-A **
13213647-G-A 11057971-G-A **
11018828-A-G **
10973221-GTTCCA-G **
10956560-A-G **
10952411-A-C **
10935833-C-A **
9937633-C-A 10100024-C-A **
10795807-A-T **
9899572-C-A 10061963-C-A **
8138016-C-A 8269975-C-A **
8678158-G-T 8810117-G-T **
7255988-G-T 7387947-G-T **
8288833-A-AGG 8420792-A-AGG **
7470553-T-A 7602512-T-A IR1_L **
8283804-C-A 8415763-C-A **
8235694-A-G 8367653-A-G **
7264929-A-C 7396888-A-C **
7287908-C-A 7419867-C-A **
7317210-C-A 7449169-C-A **
7334184-C-A 7466143-C-A **
8746234-C-T 8878193-C-T **
8119311-G-A 8251270-G-A **
7935724-T-A 8067683-T-A **
7341535-G-T 7473494-G-T **
7897630-G-T 8029589-G-T **
7896586-G-A 8028545-G-A **
7894655-C-A 8026614-C-A **
7862137-C-A 7994096-C-A **
7829725-G-C 7961684-G-C **
7572746-C-A 7704705-C-A **
8697877-C-A 8829836-C-A **
8288795-C-A 8420754-C-A **
8766200-TG-T 8898159-TG-T **
7135464-C-G 7267423-C-G **
9076667-G-T 9239058-G-T **
7229078-C-A 7361037-C-A **
9689276-T-TA 9851667-T-TA IR3_Prx **
9678169-C-T 9840560-C-T IR3_Prx **
7160987-G-A 7292946-G-A **
7185645-C-T 7317604-C-T **
8913064-C-A 9045023-C-A **
9221614-T-C 9384005-T-C **
9461748-G-T 9624139-G-T **
9434388-G-A 9596779-G-A **
9462909-C-T 9625300-C-T **
10949348-C-A ***
10987863-C-CCACTT ***
18184911-C-A 16073031-C-A ***
2810390-GA-T 2942349-GA-T ***
13857589-T-C 11736883-T-C ***
13468315-C-A 11312639-C-A ***
13450576-A-C 11294900-A-C ***
13460056-C-A 11304380-C-A ***
13456512-A-T 11300836-A-T ***
13482885-C-A 11327209-C-A ***
13579854-A-T 11424178-A-T ***
13484140-G-C 11328464-G-C ***
56833027-A-G ***
19973944-A-C 17862064-A-C P5_Prx ***
22240333-C-A 20078447-C-A DYZ19 ***
24184143-G-T 22037996-G-T P3_b1 ***
11643677-C-G,T ***
7040076-C-T 7172035-C-T ***
26163131-A-G 24016984-A-G P1_Y1 ***
13601967-G-T 11446291-G-T ***
13839850-G-T 11719144-G-T ***
13478549-T-A 11322873-T-A ***
18391998-C-A 16280118-C-A P6_Gap ***
14069295-AT-A 11948589-AT-A 9×T***
56833282-A-C ***
10987830-A-T ***
13488683-G-GC,T 11333007-G-GC,T ***
13453145-ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA-A,ACTCGGGATGATTCAATTCCATTCTAATACATTCCATTCCATTCAATTCCATTCCATTCCATTCCG 11297469-ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA-A,ACTCGGGATGATTCAATTCCATTCTAATACATTCCATTCCATTCAATTCCATTCCATTCCATTCCG ***
5644950-C-A 5776909-C-A ***
7615531-CTT-C 7747490-CTT-C 12×T***
3012827-A-T 3144786-A-T ***
21912231-C-A 19750345-C-A ***
14947663-G-C 12835737-G-C ***
17130611-C-A 15018731-C-A ***
21317013-C-G 19155127-C-G ***
15557124-AATATATATAT-A,AATATAT 13445244-AATATATATAT-A,AATATAT 19×AT***
10657293-T-C ***
17014716-A-G 14902836-A-G ***
10039762-C-A 10202153-C-A ***
19322331-C-G 17210451-C-G ***
10034470-C-A 10196861-C-A ***
3267709-C-T 3399668-C-T ***
16971271-C-A 14859391-C-A ***
4063312-G-T 4195271-G-T ***
9462945-G-T 9625336-G-T ***
3550571-ACT-A,ACC 3682530-ACT-A,ACC ***
16590873-CAAAAA-C,CAA 14478993-CAAAAA-C,CAA 17×A***
8566798-C-A 8698757-C-A ***
14557822-C-A 12446023-C-A ***
13302153-A-G 11146477-A-G ***
7928053-G-T 8060012-G-T ***
17637686-A-C 15525806-A-C ***
23522582-C-A 21360696-C-A ***
10032858-C-A 10195249-C-A ***
11017838-C-A ***
9907354-C-A 10069745-C-A BY198806 ***
19075370-G-T 16963490-G-T ***
19075410-GC-G 16963530-GC-G ***
14198803-C-A 12078097-C-A FGC14733 ***
10987844-C-A ***
23981951-G-T 21835804-G-T ***
17264939-G-T 15153059-G-T ***
19128054-A-T 17016174-A-T ***
22629591-C-T 20467705-C-T ***
8218053-C-CTTTG 8350012-C-CTTTG ***
24475144-G-T 22328997-G-T ***
22551506-T-G 20389620-T-G ***
19302526-G-T 17190646-G-T ***
25931584-G-A 23785437-G-A P1_Y1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
Henderson1322141111-14121212131329179-910112515193015-15-16-17-17-17111019-231515181737-37121211915-1681010810101222-23161112121681322211312111311111212

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2328001013313672474577298803
Kit: 232800965461878550967747255
Used in age calculations1013313678550967747255
Counts of SNPs2118
Variant counts last updated 2019-09-09 23:36:00.


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