Hinxton
aDNA: HI2Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | aDNA HI2 | Manual Edits |
---|---|---|---|---|---|---|---|---|
hg19:Y:16635364-TAC-T hg38:Y:14523484-TAC-T | + | |||||||
hg19:Y:17274967-T-C hg38:Y:15163087-T-C | BY49209 | Y | Y | + | ||||
hg19:Y:21055821-G-A hg38:Y:18893935-G-A | Z11849 M8864 | Y | + | |||||
hg19:Y:21741134-ATG-A hg38:Y:19579248-ATG-A | + | |||||||
hg19:Y:2696312-A-G hg38:Y:2828271-A-G | Y | Y | + | |||||
hg19:Y:2707623-TG-T hg38:Y:2839582-TG-T | + | |||||||
hg19:Y:2719584-G-A hg38:Y:2851543-G-A | FT178569 | Y | Y | + | ||||
hg19:Y:2746337-C-A hg38:Y:2878296-C-A | Y | Y | + | |||||
hg19:Y:2790729-T-A hg38:Y:2922688-T-A | Y | + | ||||||
hg19:Y:2799483-C-T hg38:Y:2931442-C-T | Y | Y | + | |||||
hg19:Y:2822611-A-G hg38:Y:2954570-A-G | Y | Y | + | |||||
hg19:Y:2859095-G-A hg38:Y:2991054-G-A | Y | Y | + | |||||
hg19:Y:2883560-C-T hg38:Y:3015519-C-T | Y | Y | + | |||||
hg19:Y:2884603-C-G hg38:Y:3016562-C-G | Y | Y | + | |||||
hg19:Y:2906146-A-G hg38:Y:3038105-A-G | Y | Y | + | |||||
hg19:Y:3251283-T-C hg38:Y:3383242-T-C | + | |||||||
hg19:Y:3528651-C-G hg38:Y:3660610-C-G | + | |||||||
hg19:Y:3587014-T-C hg38:Y:3718973-T-C | + | |||||||
hg19:Y:3635870-G-A hg38:Y:3767829-G-A | + | |||||||
hg19:Y:4040853-G-C hg38:Y:4172812-G-C | + | |||||||
hg19:Y:4057943-G-A hg38:Y:4189902-G-A | + | |||||||
hg19:Y:4077578-T-TA hg38:Y:4209537-T-TA | + | |||||||
hg19:Y:4768125-T-C hg38:Y:4900084-T-C | + | |||||||
hg19:Y:4841581-C-T hg38:Y:4973540-C-T | + | |||||||
hg19:Y:4920211-T-TA hg38:Y:5052170-T-TA | + | |||||||
hg19:Y:4974766-A-G hg38:Y:5106725-A-G | + | |||||||
hg19:Y:5122043-T-C hg38:Y:5254002-T-C | + | |||||||
hg19:Y:5388134-C-T hg38:Y:5520093-C-T | + | |||||||
hg19:Y:5388156-C-A hg38:Y:5520115-C-A | + | |||||||
hg19:Y:6012582-C-T hg38:Y:6144541-C-T | + | |||||||
hg19:Y:6406420-C-T hg38:Y:6538379-C-T | + | |||||||
hg19:Y:6661496-G-C hg38:Y:6793455-G-C | Y | Y | + | |||||
hg19:Y:6678401-A-G hg38:Y:6810360-A-G | Y | Y | + | |||||
hg19:Y:6699911-C-T hg38:Y:6831870-C-T | Y | Y | + | |||||
hg19:Y:6700713-G-A hg38:Y:6832672-G-A | Y | Y | + | |||||
hg19:Y:6788598-A-G hg38:Y:6920557-A-G | Y | Y | + | |||||
hg19:Y:6906070-G-C hg38:Y:7038029-G-C | Y | Y | + | |||||
hg19:Y:6944457-C-T hg38:Y:7076416-C-T | Y | Y | + | |||||
hg19:Y:6952205-A-G hg38:Y:7084164-A-G | Y | Y | + | |||||
hg19:Y:7031404-C-T hg38:Y:7163363-C-T | Y | + | ||||||
hg19:Y:7040962-A-G hg38:Y:7172921-A-G | Y | + | ||||||
hg19:Y:7143766-C-T hg38:Y:7275725-C-T | Y | + | ||||||
hg19:Y:7562393-T-C hg38:Y:7694352-T-C | Y | Y | + | |||||
hg19:Y:7566596-G-A hg38:Y:7698555-G-A | Y | Y | + | |||||
hg19:Y:7571199-A-AT hg38:Y:7703158-A-AT | + | |||||||
hg19:Y:7630396-G-A hg38:Y:7762355-G-A | Y | + | ||||||
hg19:Y:7757086-A-G hg38:Y:7889045-A-G | Y | Y | + | |||||
hg19:Y:7821289-G-A hg38:Y:7953248-G-A | Y | Y | + | |||||
hg19:Y:7959720-A-G hg38:Y:8091679-A-G | Y | Y | + | |||||
hg19:Y:7980442-G-T hg38:Y:8112401-G-T | Y | Y | + | |||||
hg19:Y:7990837-G-A hg38:Y:8122796-G-A | Y | + | ||||||
hg19:Y:7990844-G-A hg38:Y:8122803-G-A | Y | + | ||||||
hg19:Y:8021955-A-G hg38:Y:8153914-A-G | Y | Y | + | |||||
hg19:Y:8029356-C-T hg38:Y:8161315-C-T | Y | Y | + | |||||
hg19:Y:8046202-C-T hg38:Y:8178161-C-T | Y | Y | + | |||||
hg19:Y:8126060-G-A hg38:Y:8258019-G-A | Y | Y | + | |||||
hg19:Y:8155870-T-C hg38:Y:8287829-T-C | Y | Y | + | |||||
hg19:Y:8161829-G-T hg38:Y:8293788-G-T | Y | Y | + | |||||
hg19:Y:8189692-T-C hg38:Y:8321651-T-C | Y | Y | + | |||||
hg19:Y:8223313-G-A hg38:Y:8355272-G-A | Y | Y | + | |||||
hg19:Y:8237359-C-T hg38:Y:8369318-C-T | Y | Y | + | |||||
hg19:Y:8305915-G-GGA hg38:Y:8437874-G-GGA | + | |||||||
hg19:Y:8385236-C-A hg38:Y:8517195-C-A | Y | + | ||||||
hg19:Y:8413617-G-A hg38:Y:8545576-G-A | Y | Y | + | |||||
hg19:Y:8475160-C-T hg38:Y:8607119-C-T | Y | Y | + | |||||
hg19:Y:8504715-G-T hg38:Y:8636674-G-T | Y | Y | + | |||||
hg19:Y:8661333-C-T hg38:Y:8793292-C-T | Y | + | ||||||
hg19:Y:8714468-G-A hg38:Y:8846427-G-A | Y | Y | + | |||||
hg19:Y:8735754-A-G hg38:Y:8867713-A-G | Y | + | ||||||
hg19:Y:8747535-G-A hg38:Y:8879494-G-A | Y | Y | + | |||||
hg19:Y:8769838-T-C hg38:Y:8901797-T-C | Y | Y | + | |||||
hg19:Y:8779524-T-C hg38:Y:8911483-T-C | Y | Y | + | |||||
hg19:Y:8799190-T-G hg38:Y:8931149-T-G | Y | Y | + | |||||
hg19:Y:8816469-G-A hg38:Y:8948428-G-A | Y | + | ||||||
hg19:Y:8846009-G-T hg38:Y:8977968-G-T | Y | Y | + | |||||
hg19:Y:8912835-G-T hg38:Y:9044794-G-T | + | |||||||
hg19:Y:9039965-G-GTA hg38:Y:9202356-G-GTA | + | |||||||
hg19:Y:9043583-C-T hg38:Y:9205974-C-T | Y | + | ||||||
hg19:Y:9120087-G-A hg38:Y:9282478-G-A | Y | + | ||||||
hg19:Y:9135108-C-T hg38:Y:9297499-C-T | Y | + | ||||||
hg19:Y:9395601-G-A hg38:Y:9557992-G-A | Y | Y | + | |||||
hg19:Y:9397457-C-A hg38:Y:9559848-C-A | Y | Y | + | |||||
hg19:Y:9404282-A-T hg38:Y:9566673-A-T | Y | Y | + | |||||
hg19:Y:9812448-C-G hg38:Y:9974839-C-G | Y | Y | + | |||||
hg19:Y:9824829-T-C hg38:Y:9987220-T-C | Y | + | ||||||
hg19:Y:9841525-A-AG hg38:Y:10003916-A-AG | + | |||||||
hg19:Y:9849516-T-C hg38:Y:10011907-T-C | Y | Y | + | |||||
hg19:Y:9849540-G-T hg38:Y:10011931-G-T | Y | Y | + | |||||
hg19:Y:9862212-G-A hg38:Y:10024603-G-A | Y | Y | + | |||||
hg19:Y:9884085-T-C hg38:Y:10046476-T-C | Y | Y | + | |||||
hg19:Y:9886615-G-A hg38:Y:10049006-G-A | Y | Y | + | |||||
hg19:Y:9907162-G-A hg38:Y:10069553-G-A | Y | + | ||||||
hg19:Y:9946411-A-G hg38:Y:10108802-A-G | Y | + | ||||||
hg19:Y:10042606-C-T hg38:Y:10204997-C-T | + | |||||||
hg19:Y:10068205-A-G hg38:Y:10230596-A-G | + | |||||||
hg19:Y:13340639-A-AG hg38:Y:11184963-A-AG | + | |||||||
hg19:Y:13372528-TA-T hg38:Y:11216852-TA-T | + | |||||||
hg19:Y:13483018-A-C hg38:Y:11327342-A-C | + | |||||||
hg19:Y:13483025-C-T hg38:Y:11327349-C-T | + | |||||||
hg19:Y:13600274-CG-C hg38:Y:11444598-CG-C | + | |||||||
hg19:Y:13629569-G-GA hg38:Y:11473893-G-GA | + | |||||||
hg19:Y:13671281-G-A hg38:Y:11515605-G-A | DYZ17 | + | ||||||
hg19:Y:13815970-G-A hg38:Y:11695264-G-A | DYZ17 | + | ||||||
hg19:Y:13867214-A-AG hg38:Y:11746508-A-AG | DYZ17 | + | ||||||
hg19:Y:13885749-C-G hg38:Y:11765043-C-G | Y | + | ||||||
hg19:Y:14012424-G-T hg38:Y:11891718-G-T | Y | + | ||||||
hg19:Y:14027609-T-C hg38:Y:11906903-T-C | Y | Y | + | |||||
hg19:Y:14094516-C-T hg38:Y:11973810-C-T | Y | Y | + | |||||
hg19:Y:14104704-A-T hg38:Y:11983998-A-T | Y | Y | + | |||||
hg19:Y:14104992-T-C hg38:Y:11984286-T-C | Y | Y | + | |||||
hg19:Y:14147630-A-G hg38:Y:12026924-A-G | Y | Y | + | |||||
hg19:Y:14229082-G-A hg38:Y:12108376-G-A | Y | Y | + | |||||
hg19:Y:14313359-T-C hg38:Y:12192653-T-C | Y | Y | + | |||||
hg19:Y:14404645-G-T hg38:Y:12283942-G-T | Y | Y | + | |||||
hg19:Y:14464476-T-G hg38:Y:12343749-T-G | Y | Y | + | |||||
hg19:Y:14516061-G-A hg38:Y:12404262-G-A | Y91621 | Y | Y | + | ||||
hg19:Y:14521503-G-T hg38:Y:12409704-G-T | Y | Y | + | |||||
hg19:Y:14538055-C-A hg38:Y:12426256-C-A | Y | Y | + | |||||
hg19:Y:14538080-C-G hg38:Y:12426281-C-G | Y | Y | + | |||||
hg19:Y:14553345-G-C hg38:Y:12441546-G-C | Y | Y | + | |||||
hg19:Y:14906578-G-A hg38:Y:12794645-G-A | Y | Y | + | |||||
hg19:Y:14974762-T-C hg38:Y:12862837-T-C | Y | Y | + | |||||
hg19:Y:15004544-C-T hg38:Y:12892629-C-T | Y | Y | + | |||||
hg19:Y:15016872-G-C hg38:Y:12904961-G-C | Y | Y | + | |||||
hg19:Y:15059443-C-T hg38:Y:12947535-C-T | Y | Y | + | |||||
hg19:Y:15178545-C-T hg38:Y:13066631-C-T | Y | + | ||||||
hg19:Y:15310406-G-T hg38:Y:13198511-G-T | Y | Y | + | |||||
hg19:Y:15359733-C-T hg38:Y:13247853-C-T | Y | Y | + | |||||
hg19:Y:15403809-G-T hg38:Y:13291929-G-T | Y | Y | + | |||||
hg19:Y:15420518-C-T hg38:Y:13308638-C-T | Y | Y | + | |||||
hg19:Y:15427864-A-C hg38:Y:13315984-A-C | Y | Y | + | |||||
hg19:Y:15511780-C-T hg38:Y:13399900-C-T | Y | Y | + | |||||
hg19:Y:15550152-C-T hg38:Y:13438272-C-T | Y | Y | + | |||||
hg19:Y:15550161-G-A hg38:Y:13438281-G-A | Y | Y | + | |||||
hg19:Y:15566445-A-G hg38:Y:13454565-A-G | Y | Y | + | |||||
hg19:Y:15580583-A-G hg38:Y:13468703-A-G | Y | Y | + | |||||
hg19:Y:15580600-G-A hg38:Y:13468720-G-A | Y | Y | + | |||||
hg19:Y:15654556-T-C hg38:Y:13542676-T-C | Y | Y | + | |||||
hg19:Y:15732006-T-C hg38:Y:13620126-T-C | Y | Y | + | |||||
hg19:Y:15744757-G-A hg38:Y:13632877-G-A | Y | Y | + | |||||
hg19:Y:15775844-C-T hg38:Y:13663964-C-T | Y | + | ||||||
hg19:Y:15878467-C-T hg38:Y:13766587-C-T | Y | Y | + | |||||
hg19:Y:15913010-T-C hg38:Y:13801130-T-C | Y | Y | + | |||||
hg19:Y:15956459-G-T hg38:Y:13844579-G-T | Y | Y | + | |||||
hg19:Y:15967025-C-T hg38:Y:13855145-C-T | Y | Y | + | |||||
hg19:Y:16048325-C-T hg38:Y:13936445-C-T | Y | + | ||||||
hg19:Y:16086055-C-T hg38:Y:13974175-C-T | Y | + | ||||||
hg19:Y:16227957-G-A hg38:Y:14116077-G-A | Y | Y | + | |||||
hg19:Y:16234890-C-T hg38:Y:14123010-C-T | Y | Y | + | |||||
hg19:Y:16238528-C-G hg38:Y:14126648-C-G | Y | Y | + | |||||
hg19:Y:16280707-G-C hg38:Y:14168827-G-C | Y | Y | + | |||||
hg19:Y:16292242-C-T hg38:Y:14180362-C-T | Y | Y | + | |||||
hg19:Y:16342563-G-A hg38:Y:14230683-G-A | Y | Y | + | |||||
hg19:Y:16342565-GA-G hg38:Y:14230685-GA-G | + | |||||||
hg19:Y:16350540-A-T hg38:Y:14238660-A-T | Y | Y | + | |||||
hg19:Y:16385129-C-A hg38:Y:14273249-C-A | Y | Y | + | |||||
hg19:Y:16462516-G-T hg38:Y:14350636-G-T | Y | Y | + | |||||
hg19:Y:16544628-G-A hg38:Y:14432748-G-A | Y | Y | + | |||||
hg19:Y:16607914-C-T hg38:Y:14496034-C-T | Y | Y | + | |||||
hg19:Y:16613341-T-C hg38:Y:14501461-T-C | Y | Y | + | |||||
hg19:Y:16661337-G-A hg38:Y:14549457-G-A | FTA16464 | Y | Y | + | ||||
hg19:Y:16667931-G-A hg38:Y:14556051-G-A | Y | Y | + | |||||
hg19:Y:16736171-C-A hg38:Y:14624291-C-A | Y | Y | + | |||||
hg19:Y:16758110-T-C hg38:Y:14646230-T-C | Y | Y | + | |||||
hg19:Y:16874931-G-A hg38:Y:14763051-G-A | Y | Y | + | |||||
hg19:Y:16930711-C-A hg38:Y:14818831-C-A | Y | + | ||||||
hg19:Y:17144624-T-C hg38:Y:15032744-T-C | Y | Y | + | |||||
hg19:Y:17171437-C-CTG hg38:Y:15059557-C-CTG | + | |||||||
hg19:Y:17236391-C-A hg38:Y:15124511-C-A | Y | Y | + | |||||
hg19:Y:17305224-A-G hg38:Y:15193344-A-G | Y | Y | + | |||||
hg19:Y:17344507-C-T hg38:Y:15232627-C-T | BY114020 | Y | Y | + | ||||
hg19:Y:17379649-C-T hg38:Y:15267769-C-T | Y | + | ||||||
hg19:Y:17382275-C-T hg38:Y:15270395-C-T | PF4169 | Y | + | |||||
hg19:Y:17481883-G-T hg38:Y:15370003-G-T | Y | + | ||||||
hg19:Y:17499914-C-A hg38:Y:15388034-C-A | Y | + | ||||||
hg19:Y:17636876-C-CTT hg38:Y:15524996-C-CTT | + | |||||||
hg19:Y:17658910-G-A hg38:Y:15547030-G-A | Y | Y | + | |||||
hg19:Y:17672961-C-T hg38:Y:15561081-C-T | Y | Y | + | |||||
hg19:Y:17708150-G-GT hg38:Y:15596270-G-GT | + | |||||||
hg19:Y:17748547-G-A hg38:Y:15636667-G-A | YP1263 | Y | Y | + | ||||
hg19:Y:17766511-G-C hg38:Y:15654631-G-C | Y | Y | + | |||||
hg19:Y:17801393-C-T hg38:Y:15689513-C-T | Y | Y | + | |||||
hg19:Y:17928128-C-T hg38:Y:15816248-C-T | Y | Y | + | |||||
hg19:Y:17928162-T-C hg38:Y:15816282-T-C | Y | Y | + | |||||
hg19:Y:17946483-G-A hg38:Y:15834603-G-A | Y | Y | + | |||||
hg19:Y:17947683-C-T hg38:Y:15835803-C-T | Y | Y | + | |||||
hg19:Y:18035203-G-C hg38:Y:15923323-G-C | Y | Y | + | |||||
hg19:Y:18112776-T-C hg38:Y:16000896-T-C | Y | Y | + | |||||
hg19:Y:18178101-GA-G hg38:Y:16066221-GA-G | + | |||||||
hg19:Y:18257358-T-C hg38:Y:16145478-T-C | + | |||||||
hg19:Y:18571407-C-T hg38:Y:16459527-C-T | Y | Y | + | |||||
hg19:Y:18607257-CTG-C hg38:Y:16495377-CTG-C | + | |||||||
hg19:Y:18699862-G-A hg38:Y:16587982-G-A | FGC55545 | Y | Y | + | ||||
hg19:Y:18788271-A-G hg38:Y:16676391-A-G | Y | Y | + | |||||
hg19:Y:18810875-C-T hg38:Y:16698995-C-T | Y | Y | + | |||||
hg19:Y:18812369-G-A hg38:Y:16700489-G-A | Y | Y | + | |||||
hg19:Y:18841694-G-A hg38:Y:16729814-G-A | Y | Y | + | |||||
hg19:Y:18887540-A-G hg38:Y:16775660-A-G | Y | Y | + | |||||
hg19:Y:18917093-A-G hg38:Y:16805213-A-G | Y | Y | + | |||||
hg19:Y:18957033-A-G hg38:Y:16845153-A-G | Y | Y | + | |||||
hg19:Y:18981432-C-CAT hg38:Y:16869552-C-CAT | + | |||||||
hg19:Y:18989376-C-T hg38:Y:16877496-C-T | FTA50801 | Y | + | |||||
hg19:Y:19006799-T-C hg38:Y:16894919-T-C | Y | Y | + | |||||
hg19:Y:19053959-A-AG hg38:Y:16942079-A-AG | + | |||||||
hg19:Y:19076871-TC-T hg38:Y:16964991-TC-T | + | |||||||
hg19:Y:19121317-T-C hg38:Y:17009437-T-C | BY185611 | Y | Y | + | ||||
hg19:Y:19158141-C-T hg38:Y:17046261-C-T | Y | Y | + | |||||
hg19:Y:19290143-GA-G hg38:Y:17178263-GA-G | + | |||||||
hg19:Y:19382485-CTA-C hg38:Y:17270605-CTA-C | + | |||||||
hg19:Y:19423419-A-G hg38:Y:17311539-A-G | Y | Y | + | |||||
hg19:Y:20065737-C-G hg38:Y:17953857-C-G | P5_Gap | + | ||||||
hg19:Y:21250274-G-A hg38:Y:19088388-G-A | BY30688 Y76058 | Y | Y | + | ||||
hg19:Y:21263120-C-T hg38:Y:19101234-C-T | Y | Y | + | |||||
hg19:Y:21275211-C-T hg38:Y:19113325-C-T | Y | + | ||||||
hg19:Y:21302004-T-C hg38:Y:19140118-T-C | Y | Y | + | |||||
hg19:Y:21321105-G-T hg38:Y:19159219-G-T | Y | + | ||||||
hg19:Y:21373956-A-G hg38:Y:19212070-A-G | Y | Y | + | |||||
hg19:Y:21386042-G-T hg38:Y:19224156-G-T | Y | Y | + | |||||
hg19:Y:21568232-A-G hg38:Y:19406346-A-G | Y | Y | + | |||||
hg19:Y:21570706-G-A hg38:Y:19408820-G-A | Y | Y | 11×A | + | ||||
hg19:Y:21571133-G-C hg38:Y:19409247-G-C | Y | Y | + | |||||
hg19:Y:21574280-C-T hg38:Y:19412394-C-T | Y | + | ||||||
hg19:Y:21637184-C-T hg38:Y:19475298-C-T | FGC50339 | Y | Y | + | ||||
hg19:Y:21664223-G-A hg38:Y:19502337-G-A | Y | Y | + | |||||
hg19:Y:21664559-G-A hg38:Y:19502673-G-A | Y | Y | + | |||||
hg19:Y:21667853-C-A hg38:Y:19505967-C-A | Y | Y | + | |||||
hg19:Y:21674326-T-C hg38:Y:19512440-T-C | Y | Y | + | |||||
hg19:Y:21681946-A-G hg38:Y:19520060-A-G | Y | Y | + | |||||
hg19:Y:21791510-G-A hg38:Y:19629624-G-A | FTB53396 | Y | + | |||||
hg19:Y:21803459-T-A hg38:Y:19641573-T-A | Y | + | ||||||
hg19:Y:21872757-G-C hg38:Y:19710871-G-C | Y | Y | + | |||||
hg19:Y:21874903-G-A hg38:Y:19713017-G-A | FT84054 | Y | Y | + | ||||
hg19:Y:21884220-G-GA hg38:Y:19722334-G-GA | + | |||||||
hg19:Y:21903293-G-A hg38:Y:19741407-G-A | Y | Y | + | |||||
hg19:Y:21993288-C-T hg38:Y:19831402-C-T | Y | Y | + | |||||
hg19:Y:21993318-A-C hg38:Y:19831432-A-C | Y | Y | + | |||||
hg19:Y:22017786-G-A hg38:Y:19855900-G-A | Y | + | ||||||
hg19:Y:22099490-A-ATG hg38:Y:19937604-A-ATG | + | |||||||
hg19:Y:22103250-A-G hg38:Y:19941364-A-G | Y | Y | + | |||||
hg19:Y:22202391-A-G hg38:Y:20040505-A-G | Y | Y | + | |||||
hg19:Y:22210960-C-T hg38:Y:20049074-C-T | Y | + | ||||||
hg19:Y:22299839-T-C hg38:Y:20137953-T-C | DYZ19 | + | ||||||
hg19:Y:22299853-G-A hg38:Y:20137967-G-A | DYZ19 | + | ||||||
hg19:Y:22442416-TC-T hg38:Y:20280530-TC-T | DYZ19 | + | ||||||
hg19:Y:22479103-G-C hg38:Y:20317217-G-C | BY224160 | DYZ19 | + | |||||
hg19:Y:22552605-G-A hg38:Y:20390719-G-A | Y | Y | + | |||||
hg19:Y:22575383-G-T hg38:Y:20413497-G-T | Y | Y | + | |||||
hg19:Y:22627483-C-T hg38:Y:20465597-C-T | Y | Y | + | |||||
hg19:Y:22700283-C-T hg38:Y:20538397-C-T | Y | Y | + | |||||
hg19:Y:22714215-G-A hg38:Y:20552329-G-A | Y | + | ||||||
hg19:Y:22751276-G-A hg38:Y:20589390-G-A | Y | Y | + | |||||
hg19:Y:22859653-G-GCA hg38:Y:20697767-G-GCA | + | |||||||
hg19:Y:22859887-T-C hg38:Y:20698001-T-C | Y | Y | + | |||||
hg19:Y:22938580-T-C hg38:Y:20776694-T-C | Y | Y | + | |||||
hg19:Y:23003544-G-C hg38:Y:20841658-G-C | Y | Y | + | |||||
hg19:Y:23006857-G-A hg38:Y:20844971-G-A | Y | + | ||||||
hg19:Y:23144690-G-A hg38:Y:20982804-G-A | Y | Y | + | |||||
hg19:Y:23195090-A-G hg38:Y:21033204-A-G | Y | + | ||||||
hg19:Y:23195985-A-T hg38:Y:21034099-A-T | Y | + | ||||||
hg19:Y:23234909-A-G hg38:Y:21073023-A-G | Y | + | ||||||
hg19:Y:23345945-C-T hg38:Y:21184059-C-T | Y | Y | + | |||||
hg19:Y:23454169-C-T hg38:Y:21292283-C-T | Y | Y | + | |||||
hg19:Y:23499963-T-TA hg38:Y:21338077-T-TA | + | |||||||
hg19:Y:23500836-G-T hg38:Y:21338950-G-T | Y | Y | + | |||||
hg19:Y:23543844-T-TA hg38:Y:21381958-T-TA | + | |||||||
hg19:Y:23602560-C-G hg38:Y:21440674-C-G | Y | + | ||||||
hg19:Y:23606318-G-A hg38:Y:21444432-G-A | Y | Y | + | |||||
hg19:Y:23606319-T-C hg38:Y:21444433-T-C | Y | Y | + | |||||
hg19:Y:23616450-G-C hg38:Y:21454564-G-C | Y | Y | + | |||||
hg19:Y:23616536-A-AC hg38:Y:21454650-A-AC | + | |||||||
hg19:Y:23771239-C-T hg38:Y:21609353-C-T | Y | + | ||||||
hg19:Y:23877318-G-T hg38:Y:21715432-G-T | + | |||||||
hg19:Y:24071598-A-AG hg38:Y:21925451-A-AG | P3_b1 | + | ||||||
hg19:Y:24377735-A-AAG hg38:Y:22231588-A-AAG | + | |||||||
hg19:Y:24428946-T-C hg38:Y:22282799-T-C | Y | + | ||||||
hg19:Y:24444437-C-T hg38:Y:22298290-C-T | Y80728 | Y | + | |||||
hg19:Y:24450666-T-TAC hg38:Y:22304519-T-TAC | + | |||||||
hg19:Y:24453948-G-C hg38:Y:22307801-G-C | Y | + | ||||||
hg19:Y:24482216-G-A hg38:Y:22336069-G-A | + | |||||||
hg19:Y:24509786-G-C hg38:Y:22363639-G-C | + | |||||||
hg19:Y:24513452-A-G hg38:Y:22367305-A-G | + | |||||||
hg19:Y:24874493-G-A hg38:Y:22728346-G-A | g1 | + | ||||||
hg19:Y:25080046-C-G hg38:Y:22933899-C-G | g1 | + | ||||||
hg19:Y:28575634-A-AG hg38:Y:26429487-A-AG | + | |||||||
hg19:Y:28607006-C-CA hg38:Y:26460859-C-CA | + | |||||||
hg19:Y:28607007-G-C hg38:Y:26460860-G-C | + | |||||||
hg19:Y:28693937-C-G hg38:Y:26547790-C-G | + | |||||||
hg19:Y:28785447-G-A hg38:Y:26639300-G-A | + | |||||||
hg19:Y:28812911-G-A hg38:Y:26666764-G-A | + | |||||||
hg19:Y:58993621-G-T hg38:Y:56847474-G-T | + | |||||||
hg19:Y:59008426-T-A hg38:Y:56862279-T-A | + | |||||||
hg19:Y:13448440-ATTCCG-A hg38:Y:11292764-ATTCCG-A | * | |||||||
hg19:Y:13815607-A-T hg38:Y:11694901-A-T | DYZ17 | * | ||||||
hg19:Y:13254897-A-G hg38:Y:11099221-A-G | * | |||||||
hg19:Y:13651353-G-A hg38:Y:11495677-G-A | DYZ17 | * | ||||||
hg19:Y:13651361-A-G hg38:Y:11495685-A-G | DYZ17 | * | ||||||
hg19:Y:13651374-G-A hg38:Y:11495698-G-A | DYZ17 | * | ||||||
hg19:Y:23969528-G-A hg38:Y:21823381-G-A | F26535 | Y | * | |||||
hg19:Y:58980604-C-G hg38:Y:56834457-C-G | * | |||||||
hg19:Y:59020799-C-A hg38:Y:56874652-C-A | * | |||||||
hg19:Y:6767509-G-C hg38:Y:6899468-G-C | Y | Y | * | |||||
hg19:Y:6783097-C-T hg38:Y:6915056-C-T | Y | Y | * | |||||
hg19:Y:6884334-AG-A hg38:Y:7016293-AG-A | * | |||||||
hg19:Y:6956360-T-C hg38:Y:7088319-T-C | Y | Y | * | |||||
hg19:Y:6956385-T-C hg38:Y:7088344-T-C | Y | Y | * | |||||
hg19:Y:7127860-C-G hg38:Y:7259819-C-G | Y | * | ||||||
hg19:Y:7232382-T-C hg38:Y:7364341-T-C | Y | Y | * | |||||
hg19:Y:7232387-C-T hg38:Y:7364346-C-T | Y | Y | * | |||||
hg19:Y:7729811-G-A hg38:Y:7861770-G-A | Y | Y | * | |||||
hg19:Y:7745029-A-G hg38:Y:7876988-A-G | Y | Y | * | |||||
hg19:Y:7905277-T-C hg38:Y:8037236-T-C | Y | Y | * | |||||
hg19:Y:7926211-C-T hg38:Y:8058170-C-T | Y | Y | * | |||||
hg19:Y:7936416-C-A hg38:Y:8068375-C-A | Y | Y | * | |||||
hg19:Y:7942732-A-AAC hg38:Y:8074691-A-AAC | * | |||||||
hg19:Y:8018865-TG-T hg38:Y:8150824-TG-T | * | |||||||
hg19:Y:8076402-AC-A hg38:Y:8208361-AC-A | * | |||||||
hg19:Y:8212547-C-T hg38:Y:8344506-C-T | Y138924 | Y | Y | * | ||||
hg19:Y:8378512-CA-C hg38:Y:8510471-CA-C | * | |||||||
hg19:Y:8416865-C-CTG hg38:Y:8548824-C-CTG | * | |||||||
hg19:Y:8426002-AAG-A hg38:Y:8557961-AAG-A | * | |||||||
hg19:Y:8447419-A-G hg38:Y:8579378-A-G | Y | Y | * | |||||
hg19:Y:8588958-CA-C hg38:Y:8720917-CA-C | * | |||||||
hg19:Y:8636922-G-C hg38:Y:8768881-G-C | Y | Y | * | |||||
hg19:Y:8675888-C-A hg38:Y:8807847-C-A | Y | Y | * | |||||
hg19:Y:8790607-C-CA hg38:Y:8922566-C-CA | * | |||||||
hg19:Y:8827039-A-G hg38:Y:8958998-A-G | Y | Y | * | |||||
hg19:Y:8868846-T-TTC hg38:Y:9000805-T-TTC | * | |||||||
hg19:Y:8886158-A-ACG hg38:Y:9018117-A-ACG | * | |||||||
hg19:Y:9647788-A-G hg38:Y:9810179-A-G | IR3_Prx | * | ||||||
hg19:Y:9793593-T-TAG hg38:Y:9955984-T-TAG | * | |||||||
hg19:Y:10021572-C-CTG hg38:Y:10183963-C-CTG | * | |||||||
hg19:Y:13254928-G-A hg38:Y:11099252-G-A | * | |||||||
hg19:Y:13799201-G-A hg38:Y:11678495-G-A | DYZ17 | * | ||||||
hg19:Y:13815598-G-C hg38:Y:11694892-G-C | DYZ17 | * | ||||||
hg19:Y:13834710-T-C hg38:Y:11714004-T-C | DYZ17 | * | ||||||
hg19:Y:13834727-A-AG hg38:Y:11714021-A-AG | DYZ17 | * | ||||||
hg19:Y:13860052-A-C hg38:Y:11739346-A-C | DYZ17 | * | ||||||
hg19:Y:14374305-G-T hg38:Y:12253601-G-T | Y | Y | * | |||||
hg19:Y:14709461-TTAG-T hg38:Y:12597528-TTAG-T | * | |||||||
hg19:Y:14924893-GCT-G hg38:Y:12812958-GCT-G | * | |||||||
hg19:Y:15240957-A-T hg38:Y:13129043-A-T | Y | * | ||||||
hg19:Y:15271458-A-G hg38:Y:13159547-A-G | Y | Y | * | |||||
hg19:Y:15390680-C-T hg38:Y:13278800-C-T | Y | Y | * | |||||
hg19:Y:15510919-A-G hg38:Y:13399039-A-G | Y | Y | * | |||||
hg19:Y:15510937-A-G hg38:Y:13399057-A-G | Y | Y | * | |||||
hg19:Y:15867109-C-G hg38:Y:13755229-C-G | Y | Y | * | |||||
hg19:Y:15973955-C-T hg38:Y:13862075-C-T | Y | Y | * | |||||
hg19:Y:16402777-A-AAC hg38:Y:14290897-A-AAC | * | |||||||
hg19:Y:16413950-A-T hg38:Y:14302070-A-T | Y | Y | * | |||||
hg19:Y:16653767-C-T hg38:Y:14541887-C-T | Y | * | ||||||
hg19:Y:16717831-G-GGT hg38:Y:14605951-G-GGT | * | |||||||
hg19:Y:16803652-C-T hg38:Y:14691772-C-T | Y | Y | * | |||||
hg19:Y:16985856-G-A hg38:Y:14873976-G-A | Y | Y | * | |||||
hg19:Y:16985861-C-A hg38:Y:14873981-C-A | Y | Y | * | |||||
hg19:Y:17091175-G-A hg38:Y:14979295-G-A | Y | Y | * | |||||
hg19:Y:17181406-C-A hg38:Y:15069526-C-A | Y | Y | * | |||||
hg19:Y:17181408-TA-T hg38:Y:15069528-TA-T | * | |||||||
hg19:Y:17367601-G-A hg38:Y:15255721-G-A | Y | Y | * | |||||
hg19:Y:17416665-C-T hg38:Y:15304785-C-T | Y | Y | * | |||||
hg19:Y:17434775-G-A hg38:Y:15322895-G-A | Y | Y | * | |||||
hg19:Y:17499390-CAG-C hg38:Y:15387510-CAG-C | * | |||||||
hg19:Y:18391767-C-T hg38:Y:16279887-C-T | P6_Gap | * | ||||||
hg19:Y:18413673-A-AGT hg38:Y:16301793-A-AGT | P6_Gap | * | ||||||
hg19:Y:18674641-G-C hg38:Y:16562761-G-C | Y | Y | * | |||||
hg19:Y:18695009-C-G hg38:Y:16583129-C-G | Y | Y | * | |||||
hg19:Y:18773415-G-T hg38:Y:16661535-G-T | Y | Y | * | |||||
hg19:Y:18938996-GC-G hg38:Y:16827116-GC-G | * | |||||||
hg19:Y:18964200-T-C hg38:Y:16852320-T-C | Y | Y | * | |||||
hg19:Y:18964214-C-A hg38:Y:16852334-C-A | Y | Y | * | |||||
hg19:Y:18980581-T-A hg38:Y:16868701-T-A | Y | Y | * | |||||
hg19:Y:19092135-A-T hg38:Y:16980255-A-T | Y | Y | * | |||||
hg19:Y:19092137-C-G hg38:Y:16980257-C-G | Y | Y | * | |||||
hg19:Y:19092141-A-G hg38:Y:16980261-A-G | Y | Y | * | |||||
hg19:Y:19203289-G-A hg38:Y:17091409-G-A | Y | Y | * | |||||
hg19:Y:19266942-G-A hg38:Y:17155062-G-A | FT283469 | Y | Y | * | ||||
hg19:Y:19272933-C-A hg38:Y:17161053-C-A | Y | Y | * | |||||
hg19:Y:19362110-T-C hg38:Y:17250230-T-C | Y | Y | * | |||||
hg19:Y:19417093-AT-A hg38:Y:17305213-AT-A | * | |||||||
hg19:Y:19550539-T-C hg38:Y:17438659-T-C | Y | Y | * | |||||
hg19:Y:20831294-T-C hg38:Y:18669408-T-C | P4_Gap | * | ||||||
hg19:Y:21173239-TC-T hg38:Y:19011353-TC-T | * | |||||||
hg19:Y:21187579-A-G hg38:Y:19025693-A-G | Y | * | ||||||
hg19:Y:21226509-C-T hg38:Y:19064623-C-T | Y | Y | * | |||||
hg19:Y:21226510-G-T hg38:Y:19064624-G-T | Y | Y | * | |||||
hg19:Y:21433759-C-T hg38:Y:19271873-C-T | Y | Y | * | |||||
hg19:Y:21568978-G-A hg38:Y:19407092-G-A | Y56920 | Y | Y | * | ||||
hg19:Y:21569030-CCA-C hg38:Y:19407144-CCA-C | * | |||||||
hg19:Y:22020731-C-G hg38:Y:19858845-C-G | Y | Y | * | |||||
hg19:Y:22166120-T-C hg38:Y:20004234-T-C | Y | Y | * | |||||
hg19:Y:22784414-A-G hg38:Y:20622528-A-G | Y | Y | * | |||||
hg19:Y:22798665-A-ATGG hg38:Y:20636779-A-ATGG | * | |||||||
hg19:Y:22863205-A-G hg38:Y:20701319-A-G | Y | Y | * | |||||
hg19:Y:23031223-C-G hg38:Y:20869337-C-G | Y | Y | * | |||||
hg19:Y:23193541-A-AAC hg38:Y:21031655-A-AAC | * | |||||||
hg19:Y:23240785-TG-T hg38:Y:21078899-TG-T | * | |||||||
hg19:Y:23312390-G-T hg38:Y:21150504-G-T | Y | Y | * | |||||
hg19:Y:23423835-T-C hg38:Y:21261949-T-C | Y | Y | * | |||||
hg19:Y:23525139-A-T hg38:Y:21363253-A-T | Y | Y | * | |||||
hg19:Y:23554507-G-A hg38:Y:21392621-G-A | Y | Y | * | |||||
hg19:Y:23572933-A-ATG hg38:Y:21411047-A-ATG | * | |||||||
hg19:Y:23622158-C-G hg38:Y:21460272-C-G | Y | Y | * | |||||
hg19:Y:24385555-C-T hg38:Y:22239408-C-T | * | |||||||
hg19:Y:58996050-C-T hg38:Y:56849903-C-T | * |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Mutation Notes:
Kit | POSITION-REF-ALT (hg19) | POSITION-REF-ALT (hg38) | Note |
---|---|---|---|
Manual | 9129841-T-G | 9292232-T-G | 1G |
Manual | 22280455-A-G | 20118569-A-G | 4A 1G |
Manual | 22304315-A-G | 20142429-A-G | 7A 1G |
Manual | 18157337-C-T | 16045457-C-T | 4T |
Manual | 13370806-G-A | 11215130-G-A | 1A 1G. The read with G has a 'C' at position 13370797. |
Manual | 27862535-TGAGA-T | 25716388-TGAGA-T | Just one read with sufficient coverage, and it has the 4bp deletion. |
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