Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Names	Region	McDonald BED	combBED	STR	FB38 P9UH4-A	FGC P9UH4	Manual Edits
23761672-A-C	21599786-A-C	YP1209			Y		+	**
8790228-A-G	8922187-A-G	FGC3199		Y	Y		+	*
	32872-G-T						+
	13413-TAC-GGT						+
	14750-GTGGGG-TTTCAT						+
	15612-AA-TC						+
	21805280-NN-TC						+
	11653101-NN-GA						+
	14873-AGT-TAG						+
	14882-GT-G						+
	10936948-A-T						+
	11675277-AAAC-GAAT						+
22237313-C-CT	20075427-C-CT		DYZ19				+
	34920-G-A						+
	36634-AAAAA-TAAAG						+
	56877857-AAAAAAAAAAAAAAAAGGAG-CAAAAAAAAAGGGA						+
18439427-TA-T	16327547-TA-T		P6_Dst				+
21464556-GAAAAG-AAAAAA	19302670-GAAAAG-AAAAAA						+
27614542-C-T	25468395-C-T		P1_Y2			18×T	+
28534936-GTTTC-TTTTT	26388789-GTTTC-TTTTT						+
22314659-C-T	20152773-C-T		DYZ19				*
22432968-A-G	20271082-A-G		DYZ19				*
22481783-A-T	20319897-A-T		DYZ19				*
13700609-T-C,G	11544933-T-C,G						*
22423737-G-A	20261851-G-A		DYZ19				*
22504988-T-G	20343102-T-G		DYZ19				*
22360051-C-G	20198165-C-G		DYZ19				*
13468192-CTTAT-GTTAC	11312516-CTTAT-GTTAC						*
13691232-CGC-GGG	11535556-CGC-GGG						*
13709578-CA-TT	11553902-CA-TT						*
28805345-CA-AT	26659198-CA-AT						*
28812475-ATC-GTA	26666328-ATC-GTA						*
58979661-TTTAC-ATTAT	56833514-TTTAC-ATTAT						*
58979862-TG-CT	56833715-TG-CT						*
22503841-T-G	20341955-T-G		DYZ19				*
22503789-T-C	20341903-T-C		DYZ19				*
13468273-CCAT-TCGC	11312597-CCAT-TCGC						*
22324619-G-T	20162733-G-T		DYZ19				*
13347932-T-C	11192256-T-C					21×AC	*
27794677-C-CAT	25648530-C-CAT		P1_Y2			12×AT	*
22320494-C-A	20158608-C-A		DYZ19				*
22320849-T-G	20158963-T-G		DYZ19				*
22323036-A-C	20161150-A-C		DYZ19				*
22481770-C-T	20319884-C-T		DYZ19				*
22493637-T-C	20331751-T-C		DYZ19				*
22501241-G-T	20339355-G-T		DYZ19				*
13723167-GG-TT	11567491-GG-TT						*
28812733-TTA-GTG	26666586-TTA-GTG						*
13451745-AC-GT	11296069-AC-GT						*
13717777-GTCA-CTCG	11562101-GTCA-CTCG						*
13244874-A-G	11089198-A-G						*
13569797-T-A	11414121-T-A						*
59013026-A-T	56866879-A-T						*
13690848-CAA-GAT	11535172-CAA-GAT						*
58974437-ATTC-GTTT	56828290-ATTC-GTTT						*
58977739-ATTG-TTTA	56831592-ATTG-TTTA						*
28814590-TC-GA	26668443-TC-GA						*
22455451-G-T	20293565-G-T		DYZ19				*
28224059-A-G	26077912-A-G		P1_b4				*
22321064-T-G	20159178-T-G		DYZ19				*
22355517-G-C	20193631-G-C		DYZ19				*
22503805-G-A	20341919-G-A		DYZ19				*
9936297-CACG-GACA	10098688-CACG-GACA						*
27483079-T-C	25336932-T-C		P1_Y2				*
13204025-ATAATGG-CTGATGA	11048349-ATAATGG-CTGATGA						*
13514189-ATG-GTT	11358513-ATG-GTT						*
13268061-AG-CA	11112385-AG-CA						*
22324469-A-C	20162583-A-C		DYZ19				*
27483042-G-A	25336895-G-A		P1_Y2				*
59031513-CC-GG	56885366-CC-GG						*
59012419-AT-CA	56866272-AT-CA						*
22495101-T-G	20333215-T-G		DYZ19				*
22351368-T-A	20189482-T-A		DYZ19				*
22351379-G-A	20189493-G-A		DYZ19				*
58854637-CGATG-GCATT	56736230-CATCG-AATGC						*
22343282-G-C	20181396-G-C		DYZ19				*
58867066-A-T	56723805-T-A						*
27483421-A-G	25337274-A-G		P1_Y2				*
22481867-G-T	20319981-G-T		DYZ19				*
22503441-C-G	20341555-C-G		DYZ19				*
20473133-G-A	18311247-G-A	BY154935	P5_Dst				*
13707161-GGT-TGC	11551485-GGT-TGC						*
28795663-CATC-GATA	26649516-CATC-GATA						*
13688965-TGAAG-GGAAA	11533289-TGAAG-GGAAA						*
22481833-G-C	20319947-G-C		DYZ19				*
22505044-G-T	20343158-G-T		DYZ19				*
13498002-TG-AA	11342326-TG-AA						*
13565113-GTAT-ATAC	11409437-GTAT-ATAC						*
13448576-CTCTAT-TTCCAC	11292900-CTCTAT-TTCCAC						*
13450930-CC-AT	11295254-CC-AT						*
9952613-CACAT-TACAC	10115004-CACAT-TACAC						*
22502503-AG-TA	20340617-AG-TA		DYZ19				*
20751042-G-A	18589156-G-A		P4_Prx			13×A	*
28802622-CGGA-TGGC	26656475-CGGA-TGGC						*
13449764-TATTCCATTCT-CATTGCATTCC	11294088-TATTCCATTCT-CATTGCATTCC						*
22490333-A-G	20328447-A-G		DYZ19				*
22481826-G-C	20319940-G-C		DYZ19				*
28810533-GGCA-AGGG	26664386-GGCA-AGGG						*
28806847-TAG-GAT	26660700-TAG-GAT						*
28806891-GG-TT	26660744-GG-TT						*
58983538-T-C	56837391-T-C						*
58983577-A-G	56837430-A-G						*
22493308-A-T	20331422-A-T		DYZ19				*
22297923-TCAC-ACAG	20136037-TCAC-ACAG		DYZ19				*
59012364-AAAT-TAAG	56866217-AAAT-TAAG						*
	19731-A-T						*
22238323-TAAA-AAAC	20076437-TAAA-AAAC		DYZ19				*
	11003571-C-T						*
	56837376-A-C						*
	19816-TA-AC						*
20551642-A-C	18389756-A-C		P5_Dst						*
19628136-T-G	17516256-T-G		P5_Prx						*
22492650-A-C	20330764-A-C		DYZ19				*
22492755-G-C	20330869-G-C		DYZ19				*
22496697-A-G	20334811-A-G		DYZ19				*
22493388-A-G	20331502-A-G		DYZ19				*
22501089-A-T	20339203-A-T		DYZ19				*
22501509-C-G	20339623-C-G		DYZ19				*
22501549-A-C	20339663-A-C		DYZ19				*
22501556-G-A	20339670-G-A		DYZ19				*
22501658-T-G	20339772-T-G		DYZ19				*
10047855-ACACC-CCACA	10210246-ACACC-CCACA						*
13694270-ATGAC-GTGAA	11538594-ATGAC-GTGAA						*
9965245-GAACTAT-AAACAA	10127636-GAACTAT-AAACAA						*
28583599-GTG-CTA	26437452-GTG-CTA						*
13694670-AGGA-CGGC	11538994-AGGA-CGGC						*
20738728-G-T	18576842-G-T		P4_Prx				*		*
20905447-C-A	18743561-C-A		P4_Dst				*		*
20121812-T-C	18009932-T-C	ZZ85_2	P5_Dst				*
22453768-C-T	20291882-C-T		DYZ19				*
22453776-G-A	20291890-G-A		DYZ19				*
22453797-G-A	20291911-G-A		DYZ19				*
22496853-A-G	20334967-A-G		DYZ19				*
28809934-AGAAT-GGAAG	26663787-AGAAT-GGAAG						*
28811012-TCGG-ACGC	26664865-TCGG-ACGC						*
	11003609-G-C						*
22501170-T-C	20339284-T-C		DYZ19				*
22501251-G-T	20339365-G-T		DYZ19				*
22501518-G-T	20339632-G-T		DYZ19				*
22501525-T-A	20339639-T-A		DYZ19				*
22501568-T-A	20339682-T-A		DYZ19				*
22493523-A-C	20331637-A-C		DYZ19				*
24057217-C-T	21911070-C-T		P3_b1				*
28810437-GGT-AGGG	26664290-GGT-AGGG						*
22355982-T-C	20194096-T-C		DYZ19				*
22496895-C-T	20335009-C-T		DYZ19				*
22492211-C-T	20330325-C-T		DYZ19				*
22492219-G-A	20330333-G-A		DYZ19				*
22492240-G-A	20330354-G-A		DYZ19				*
	11003579-TC-T						*
25784078-A-C	23637931-A-C		P1_b3				*
23703760-G-A	21541874-G-A						*
28257621-T-A	26111474-T-A		P1_b4				*
26476558-C-T	24330411-C-T		P1_Y1				*
	10972838-C-A						*
9936449-TG-CA	10098840-TG-CA						*
9952497-AG-GA,GG	10114888-AG-GA,GG						*
9961197-ATT-GTG	10123588-ATT-GTG						*
10061852-TAC-CAT	10224243-TAC-CAT						*
10061899-ACAG-GCAT	10224290-ACAG-GCAT						*
	10683305-CA-AT,CT						*
	10789463-GC-AG,GG						*
	10900008-CTCCA-ATCCC						*
	10986745-GAA-AAC,GAC						*
13262027-C-A	11106351-C-A						*
13263468-GGT-ACA,GCA	11107792-GGT-ACA,GCA						*
13263676-TGCG-AGCT,TGTG	11108000-TGCG-AGCT,TGTG						*
13267843-CC-AC,AT	11112167-CC-AC,AT						*
13267850-GCTCA-CCTCA,CCTCT	11112174-GCTCA-CCTCA,CCTCT						*
13271055-G-AAA	11115379-G-AAA						*
13272738-TT-CC,CT	11117062-TT-CC,CT						*
13446484-TG-CA,CG	11290808-TG-CA,CG						*
13448317-CTCCAT-TTCCAC	11292641-CTCCAT-TTCCAC						*
13448563-GAAATC-G,GCAATC	11292887-GAAATC-G,GCAATC						*
13449059-GTTCCACTG-ATTC,ATTCCACTG	11293383-GTTCCACTG-ATTC,ATTCCACTG						*
13449326-TTT-ATT,CTA	11293650-TTT-ATT,CTA						*
13450503-ACACTCCACTCCACTCCACTTCACTCCAC-ACACTCCACTCCACTCCAC,CCACTCCACTCCACTCCAATCCATCCCAT	11294827-ACACTCCACTCCACTCCACTTCACTCCAC-ACACTCCACTCCACTCCAC,CCACTCCACTCCACTCCAATCCATCCCAT						*
13450996-CAT-CAC,TAC	11295320-CAT-CAC,TAC						*
13451074-CTAT-GGAA,GGAT	11295398-CTAT-GGAA,GGAT						*
13452125-TTCCACTG-CTCCACTG,CTCTACTC	11296449-TTCCACTG-CTCCACTG,CTCTACTC						*
13452227-CCACTC-C,G	11296551-CCACTC-C,G						*
13468234-ATG-TTC	11312558-ATG-TTC						*
13564080-TG-CC	11408404-TG-CC						*
13564093-TGAAA-CGAAG	11408417-TGAAA-CGAAG						*
13688232-GAATGC-GAATGG,TAATGG	11532556-GAATGC-GAATGG,TAATGG						*
13689738-CTC-ATG,ATGGACTC	11534062-CTC-ATG,ATGGACTC						*
13689934-CGGAG-CGGAA,TGGAA	11534258-CGGAG-CGGAA,TGGAA						*
13690439-TAA-CAG	11534763-TAA-CAG						*
13691626-CAAAATA-TAGAATT	11535950-CAAAATA-TAGAATT						*
13691798-T-AATGGA,TATGGA	11536122-T-AATGGA,TATGGA						*
13692824-GGAAC-AGAAT	11537148-GGAAC-AGAAT						*
13693201-AGTCA-AGTCG,CGTCG	11537525-AGTCA-AGTCG,CGTCG						*
13694812-AATGGG-GATTGC,GATTGG	11539136-AATGGG-GATTGC,GATTGG						*
13696759-CGAAC-CGAAT,GGAAC	11541083-CGAAC-CGAAT,GGAAC						*
13705116-GG-TT	11549440-GG-TT						*
13706085-TATGGCG-AATGGCA	11550409-TATGGCG-AATGGCA						*
13709156-CACTGGAATGGAA-GAT	11553480-CACTGGAATGGAA-GAT						*
13712659-GAATA-AAATG,GAATG	11556983-GAATA-AAATG,GAATG						*
13719489-AT-AA,TA	11563813-AT-AA,TA						*
13720826-CA-TT	11565150-CA-TT						*
13725970-CGAAC-CGAAT,GGAAC	11570294-CGAAC-CGAAT,GGAAC						*
13726023-CTGGAATGGAA-T,TTGGAATGGAA	11570347-CTGGAATGGAA-T,TTGGAATGGAA						*
13726355-CAA-GAA,GAC	11570679-CAA-GAA,GAC						*
13850547-CATGGAATGGA-C,CATGGAATGGC	11729841-CATGGAATGGA-C,CATGGAATGGC					7×ATGGA	*
22253943-T-C	20092057-T-C		DYZ19				*
22457534-TGTGTC-AGTGGT	20295648-TGTGTC-AGTGGT		DYZ19				*
22457560-AGG-GGA	20295674-AGG-GGA		DYZ19				*
28793003-CAT-AAG	26646856-CAT-AAG						*
28793486-TAATGGAATGGAATGGAATGGAATGGAAT-GAATGGAATGGAATGGAATGGAATGGAAC,TAATGTAATGGAATGGAATGGAATGGAAT	26647339-TAATGGAATGGAATGGAATGGAATGGAAT-GAATGGAATGGAATGGAATGGAATGGAAC,TAATGTAATGGAATGGAATGGAATGGAAT					7×AATGG	*
28793555-CAAAT-GAAAC	26647408-CAAAT-GAAAC						*
28794071-AA-CT	26647924-AA-CT						*
28795410-GGCA-AGGG	26649263-GGCA-AGGG						*
28797186-TAAG-GAAT	26651039-TAAG-GAAT						*
28797371-ATC-GTA	26651224-ATC-GTA						*
28799770-AAGGA-CAGGC	26653623-AAGGA-CAGGC						*
28803998-GG-TT	26657851-GG-TT						*
28804032-CAGAGTGG-TAGAGTGC	26657885-CAGAGTGG-TAGAGTGC						*
28805301-TCGG-ACGC	26659154-TCGG-ACGC						*
28805796-CGT-TGG,TGT	26659649-CGT-TGG,TGT						*
28809773-CAGAGTGG-TAGAGTGC	26663626-CAGAGTGG-TAGAGTGC						*
28813876-TCGG-ACGC	26667729-TCGG-ACGC						*
28817559-TAT-GAG,GAT	26671412-TAT-GAG,GAT						*
	19879-AG-GC						*
	56849999-GGTTA-TGTCT						*
	56867470-TATA-AATA,AATG						*
	56870780-CA-CG,TG						*
13449164-G-ATCCCACTCCT	11293488-G-ATCCCACTCCT						*
	56836191-CTTCG-CTTTG,TTTCA						*
	56857067-AAAAAAAT-A,AAAT						*
27389579-G-A	25243432-G-A		P1_g3				*
	56835849-CACTCCATTCCAATCCGTGCCAC-ACTCCATTCCAATCCATGCCAC,ACTCCATTCCAATCCATGTCAA						*
6533787-G-A	6665746-G-A						*
6547179-C-A	6679138-C-A						*
6584055-TAACTC-T	6716014-TAACTC-T						*
7664475-T-G	7796434-T-G			Y			*
7664481-T-G	7796440-T-G			Y			*
13446325-GCT-ACA,GCA	11290649-GCT-ACA,GCA						*
20428171-A-C	18266285-A-C		P5_Dst				*
20428181-C-A	18266295-C-A		P5_Dst				*
20428186-CTGG-ATGT	18266300-CTGG-ATGT		P5_Dst				*
22322371-C-T	20160485-C-T		DYZ19				*
22323223-C-T	20161337-C-T		DYZ19				*
22323625-A-C	20161739-A-C		DYZ19				*
22323958-G-C	20162072-G-C		DYZ19				*
22331275-T-A	20169389-T-A		DYZ19				*
22343230-T-A	20181344-T-A		DYZ19				*
22343238-C-T	20181352-C-T		DYZ19				*
22355674-C-G	20193788-C-G		DYZ19				*
22360966-AA-AC,CA	20199080-AA-AC,CA		DYZ19				*
22481818-ACG-CCT	20319932-ACG-CCT		DYZ19				*
22485112-AGAG-TGAC	20323226-AGAG-TGAC		DYZ19				*
22493488-A-G	20331602-A-G		DYZ19				*
22493499-T-C	20331613-T-C		DYZ19				*
22497817-T-G	20335931-T-G		DYZ19				*
24063605-G-C	21917458-G-C		P3_b1				*
24693941-G-A	22547794-G-A		P3_b2				*
25311029-C-T	23164882-C-T		P2_r1				*
25378117-G-A	23231970-G-A		P2_r2				*
25419806-CT-C	23273659-CT-C		P2_r2			16×T	*
25730924-G-C	23584777-G-C		P1_b3				*
26477536-C-T	24331389-C-T		P1_Y1				*
26572829-C-T	24426682-C-T		P1_g2				*
26819062-G-A	24672915-G-A		P1_g2				*
26842075-TA-T	24695928-TA-T		P1_r3			17×A	*
26947102-C-T	24800955-C-T		P1_r3				*
27003352-G-A	24857205-G-A		P1_r4				*
27483061-C-T	25336914-C-T		P1_Y2				*
27489479-A-G	25343332-A-G		P1_Y2				*
28231450-C-G	26085303-C-G		P1_b4				*
28582605-T-A,C	26436458-T-A,C						*
28587895-CCC-TCT	26441748-CCC-TCT						*
	56827528-TTTCCTTTCCATTCCA-T,TTTCCATTCCATTCCA						*
	56827548-TTTCCAT-ATGCGAG,ATTCCAT						*
	56830541-GC-AT						*
	56834249-GTTCCATTCCATTCCATTCC-ATTCCGTTCCATTCCATTCCATTCT					4×TTCCA	*
	56836993-TTCCATTC-CTG						*
	56848710-CAT-CAC,GAC						*
	56852256-CA-ACC						*
	56852449-CA-TG						*
	56852959-TGACA-AGACA,AGACG						*
	56854117-CA-ACC,CC						*
	56856114-AAAA-AG,G						*
	56861289-TTTTTTTTTT-ATATTTATTTTTT,ATTTTTATTTTTTA						*
	56866560-TG-GG,GT						*
	56869653-TCACA-CCATG,TCACG						*
	56878564-TAATT-T,TAATC						*
	56880908-GAGA-TAGG						*
13453840-CTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAT-CTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAA,TTCCACTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAT	11298164-CTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAT-CTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAA,TTCCACTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAT					10×TCCAT	*
13486612-AGGT-GGGA,GGGT	11330936-AGGT-GGGA,GGGT						*
	56831681-GACTCCACTCAACTCC-CACTCCACTCAACTCC,CATTCCCCTCCTCTCA						*
	56834434-ACTCCATTCCATTCCCT-ACTCCATTCCATTCCCTTCCAC,CTTCCATTCCATTCCCT						*
	56834779-GCA-CCA,GCG					4×CATTC	*
19377331-G-A	17265451-G-A						**	**
13329224-G-T	11173548-G-T							**
24672342-C-G	22526195-C-G		P3_b2					**
58859945-C-T	56730926-G-A						**	***
18227549-G-GT	16115669-G-GT					14×T	**	***
5786608-C-CAAAAAAAAAAAAA	5918567-C-CAAAAAAAAAAAAA					20×A		**
19937284-G-GCCCCCCC	17825404-G-GCCCCCCC		P5_Prx			13×C		**
26310632-C-CTTTT	24164485-C-CTTTT		P1_Y1			28×T		**
58845839-CATTCGAGTCCATTCG-C	56745015-TTCGAATGGACTCGAA-T							**
58823338-TTC-ATT	56767531-GAA-AAT						**
22266272-G-C	20104386-G-C		DYZ19				**
22252915-T-G	20091029-T-G		DYZ19				**
17275757-AA-GG	15163877-AA-GG						**
13139814-G-T	10629300-G-T						**
22337705-A-G	20175819-A-G		DYZ19				**
2783726-CAAACAAAC-AAAAAAAAA	2915685-CAAACAAAC-AAAAAAAAA						**
	10868553-T-A						**
	10692062-C-A						**
	10916335-A-G						**
	10936224-C-T						**
	10917966-C-G						**
	10982820-A-C						**
	10936882-C-T						**
	10936894-C-T						**
18892211-A-AT	16780331-A-AT						**
22353430-GAA-TAG	20191544-GAA-TAG		DYZ19				**
	10793969-T-C						**
	10957767-N-A						**
	11660375-N-T						**
	10922487-N-T						**
	4700-T-G	FGC80356					**
	36719-A-G						**
	4726-A-G	FGC77664					**
	10764197-TG-CT						**
	10764214-CTCCACA-TTGCACT						**
	10821681-TCAT-ACAC						**
	10994207-TT-CG						**
22295936-AC-GT	20134050-AC-GT		DYZ19				**
	10754266-T-G						**
	10997421-A-G						**
	10834089-TTCACA-GTCCCC						**
	10834102-AAG-CAA						**
	10942651-ACATTCCACTT-CAGTTAAACTC						**
	10629312-CTACTCC-ACATTAA						**
	10655805-CGACAG-GAGAT						**
	10668043-CAATTC-A						**
	10692261-AAAC-CAAA						**
	10693698-CC-AA						**
	10693710-GTTGCA-TTTCCG						**
	10744418-CCATT-ACATG						**
	10746845-T-C						**
	10748289-TTCC-CTCT						**
	10748308-TG-AC						**
	10749944-TCCAA-ACCAT						**
	10754280-TA-CC						**
	10754648-TCCAC-CCCAG						**
	10755023-GTTCCG-TTTCTC						**
	10763851-G-A						**
	10769195-C-T						**
	10782700-GCTC-ACTT						**
	10793951-CACC-TGCT						**
	10793993-CTA-TTC						**
	10795020-ATGA-GTGT						**
	10795028-GTA-ATC						**
	10807361-TTTCCAC-ATTTCCCT						**
	10834132-ACATT-TCATG						**
	10836461-CTCC-TTCG						**
	10859559-C-T						**
	10866327-CACA-TACG						**
	10879393-C-A	FT435241					**
	10911616-A-T						**
	10927427-TA-CG						**
	10928711-C-A						**
	10928720-A-T						**
	10930792-A-C						**
	10994189-TCATTCTATA-CCACTCCATT						**
13545351-AGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAG-GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	11389675-AGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAG-GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA						**
	11654632-T-C						**
	12371755-A-G						**
20826389-CTTTCTTTC-TTTTTTTTT	18664503-CTTTCTTTC-TTTTTTTTT		P4_Gap				**
26386507-GAAAAAC-AAAAAAA	24240360-GAAAAAC-AAAAAAA		P1_Y1				**
	56704748-C-A						**
	14982-T-G						**
	36730-C-T						**
	10801762-TAT-AAC						**
	10908390-CA-TG						**
20526874-T-C	18364988-T-C		P5_Dst				**
20692965-CAAAAA-C	18531079-CAAAAA-C		P4_Prx			19×A	**
22236702-G-A	20074816-G-A		DYZ19				**
22330071-T-TA	20168185-T-TA		DYZ19				**
27701027-C-T	25554880-C-T		P1_Y2				**
22435749-A-AT	20273863-A-AT		DYZ19					***
25705290-A-T	23559143-A-T		P1_b3			18×CT	***
13867986-T-G,TAATGG	11747280-T-G,TAATGG					10×AATGG		***
22257039-A-G	20095153-A-G		DYZ19					***
3570961-C-A	3702920-C-A							***
10018309-A-T	10180700-A-T							***
58857351-A-G	56733520-T-C							***
22017853-T-G	19855967-T-G							***
7646416-T-A	7778375-T-A					14×A		***
22757115-A-G	20595229-A-G	FGC24512						***
6617327-A-G	6749286-A-G							***
22344851-C-G	20182965-C-G		DYZ19					***
22344856-A-T	20182970-A-T		DYZ19					***
22266205-C-G	20104319-C-G		DYZ19					***
22344854-A-C	20182968-A-C		DYZ19					***
58843625-G-A	56747246-C-T							***
4275246-G-A	4407205-G-A							***
4275251-T-A	4407210-T-A							***
9202147-C-A	9364538-C-A							***
9939130-A-G	10101521-A-G							***
10052600-G-T	10214991-G-T							***
10091214-A-G	10253605-A-G							***
10091216-G-C	10253607-G-C							***
10091249-C-T	10253640-C-T							***
13129723-C-G	10619209-C-G							***
13258279-C-A	11102603-C-A						***	***
13374277-G-C	11218601-G-C					13×A		***
13580857-C-T	11425181-C-T							***
13730234-C-G	11574558-C-G							***
13742683-C-G	11587007-C-G						***	***
14109889-C-T	11989183-C-T							***
14109993-C-T	11989287-C-T							***
14258574-C-A	12137868-C-A							***
14258626-G-A	12137920-G-A							***
14258636-A-C	12137930-A-C							***
14787830-T-A	12675901-T-A							***
15884958-A-C	13773078-A-C							***
16784423-G-A	14672543-G-A							***
17196569-G-A	15084689-G-A							***
19029161-G-A	16917281-G-A							***
20655106-C-T	18493220-C-T		P4_Prx					***
22231993-A-T	20070107-A-T		DYZ19					***
22232165-C-A	20070279-C-A		DYZ19					***
22232168-A-T	20070282-A-T		DYZ19					***
22232190-G-T	20070304-G-T		DYZ19					***
22232192-G-T	20070306-G-T		DYZ19					***
22232196-T-A	20070310-T-A		DYZ19					***
22234913-C-G	20073027-C-G		DYZ19					***
22235064-A-C	20073178-A-C		DYZ19					***
22252638-C-T	20090752-C-T		DYZ19					***
22289810-T-A	20127924-T-A		DYZ19					***
22293063-A-C	20131177-A-C		DYZ19					***
22329991-T-A	20168105-T-A		DYZ19					***
22337669-C-G	20175783-C-G		DYZ19					***
22342921-T-A	20181035-T-A		DYZ19					***
22360260-G-T	20198374-G-T		DYZ19					***
22361234-C-A	20199348-C-A		DYZ19					***
22361375-G-T	20199489-G-T		DYZ19					***
22365649-G-A	20203763-G-A		DYZ19					***
22365691-C-A	20203805-C-A		DYZ19					***
22366658-G-T	20204772-G-T		DYZ19					***
22366688-G-T	20204802-G-T		DYZ19					***
22366714-A-T	20204828-A-T		DYZ19					***
22366768-C-G	20204882-C-G		DYZ19					***
22421847-T-C	20259961-T-C		DYZ19					***
22450150-G-T	20288264-G-T		DYZ19					***
22481631-A-G	20319745-A-G		DYZ19					***
22481674-T-A	20319788-T-A		DYZ19					***
22495731-G-A	20333845-G-A		DYZ19					***
22496043-C-A	20334157-C-A		DYZ19					***
22496212-A-G	20334326-A-G		DYZ19					***
22499499-C-T	20337613-C-T		DYZ19					***
22504592-G-C	20342706-G-C		DYZ19					***
22757065-A-T	20595179-A-T							***
22757104-A-G	20595218-A-G							***
24207616-C-A	22061469-C-A		P3_b1					***
25268596-G-A	23122449-G-A		P2_r1					***
25656546-G-T	23510399-G-T		P1_b3					***
25736792-C-A	23590645-C-A		P1_b3					***
26483733-T-C	24337586-T-C		P1_Y1					***
27077100-A-T	24930953-A-T		P1_r4					***
27078013-G-C	24931866-G-C		P1_r4			24×AC		***
27902189-C-T	25756042-C-T		P1_Y2					***
27902197-C-T	25756050-C-T		P1_Y2			34×T		***
27905021-C-T	25758874-C-T		P1_Y2					***
58823172-C-T	56767699-G-A							***
58831551-T-C	56759320-A-G							***
58831563-T-A	56759308-A-T							***
58831571-C-A	56759300-G-T							***
58840431-G-A	56750440-C-T							***
58841320-C-T	56749551-G-A							***
58843537-T-G	56747334-A-C							***
58843539-T-C	56747332-A-G							***
58843619-C-G	56747252-G-C							***
58843621-T-A	56747250-A-T							***
58843622-T-G	56747249-A-C							***
58843631-T-A	56747240-A-T							***
58843684-A-G	56747187-T-C							***
58846255-G-C	56744616-C-G							***
58846705-G-C	56744166-C-G							***
58858642-C-A	56732229-G-T							***
58861589-G-T	56729282-C-A							***
58864124-T-G	56726747-A-C							***
58867576-C-G	56723295-G-C							***
58870015-T-A	56720856-A-T							***
58873281-G-A	56717590-C-T							***
58875220-T-G	56715651-A-C							***
58898514-G-A	56692357-C-T							***
58898602-T-G	56692269-A-C							***
58907346-G-A	56683525-C-T							***
58908656-C-A	56682215-G-T							***
58913139-G-A	56677732-C-T							***
58913294-G-A	56677577-C-T							***
22480585-TTTGAA-T	20318699-TTTGAA-T		DYZ19					***
13203965-GA-G	11048289-GA-G							***
13203943-TGA-GGT	11048267-TGA-GGT							***
9962120-AT-GG	10124511-AT-GG							***
19183814-C-CTTT	17071934-C-CTTT					28×T		***
28794963-CT-C	26648816-CT-C							***
58844026-A-ATC	56746843-A-AAG							***
13469931-TGAC-CGCA	11314255-TGAC-CGCA							***
2685644-C-CTTTTTT	2817603-C-CTTTTTT					20×T		***
4269771-C-CTTTTT	4401730-C-CTTTTT					24×T		***
4848574-G-GTTTTTTT	4980533-G-GTTTTTTT					29×T		***
6089764-G-GTTTTT	6221723-G-GTTTTT					31×T		***
7032333-A-ATTTTT	7164292-A-ATTTTT					22×T		***
8125067-AAG-A	8257026-AAG-A							***
9732895-C-CAAAAAA	9895286-C-CAAAAAA		IR3_Prx			20×A		***
13140073-CGAGTGCGTGTGATTCCATT-C	10629559-CGAGTGCGTGTGATTCCATT-C							***
13203955-CATCATT-GACAATA	11048279-CATCATT-GACAATA							***
13267597-C-CAAAAAAAAAA	11111921-C-CAAAAAAAAAA					11×A		***
13468959-TTAGA-CTGTG	11313283-TTAGA-CTGTG							***
13482911-ATTC-GTTA	11327235-ATTC-GTTA							***
13483759-TGACT-AGATA	11328083-TGACT-AGATA							***
13485452-GGAGATA-AGAAATC	11329776-GGAGATA-AGAAATC							***
13485479-AG-TC	11329803-AG-TC							***
14025566-G-GAA	11904860-G-GAA							***
14258632-A-AT	12137926-A-AT							***
14562321-C-CTTTT	12450522-C-CTTTTT					42×T		***
15336019-C-CAAAAAAA	13224137-C-CAAAAAAA					30×A		***
15340383-C-CTTTTT	13228501-C-CTTTT					18×T		***
15884888-CA-GG	13773008-CA-GG							***
16344401-C-CTTCTTA	14232521-C-CTTCTTA							***
16344411-T-TTCTTCA	14232531-T-TTCTTCA							***
18447621-G-GGTTTTTTTTTTT	16335741-G-GGTTTTTTTTTTT		P6_Dst			18×T		***
18688500-C-CAAAAA	16576620-C-CAAAAA					20×A		***
19409391-C-CAAAAA	17297511-C-CAAAAA					22×A		***
19744991-ATTTTTTTTTTT-A	17633111-ATTTTTTTTTTT-A		P5_Prx			23×T		***
20025482-T-TCCCCCCC	17913602-T-TCCCCCCC		P5_Prx			14×C		***
20332111-C-CAAAAAAAAAAAAAAAAA	18170225-C-CAAAAAAAAAAAAAAAAA		P5_Dst			30×A		***
22113187-C-CAAAAAA	19951301-C-CAAAAAA					23×A		***
22226585-GAGCT-CAGCA	20064699-GAGCT-CAGCA		DYZ19					***
22232040-CAAA-AAAT	20070154-CAAA-AAAT		DYZ19					***
22232055-ACAC-GCAT	20070169-ACAC-GCAT		DYZ19					***
22232109-TTC-GTG	20070223-TTC-GTG		DYZ19					***
22235087-AT-A	20073201-AT-A		DYZ19					***
22236464-CCCACCAAGG-ACCAGTAAGT	20074578-CCCACCAAGG-ACCAGTAAGT		DYZ19					***
22252645-TCTTCCTTTTGGC-CCTTAATTCTGGG	20090759-TCTTCCTTTTGGC-CCTTAATTCTGGG		DYZ19					***
22263795-AC-GT	20101909-AC-GT		DYZ19					***
22265842-GT-CA	20103956-GT-CA		DYZ19					***
22273539-C-CCG	20111653-C-CCG		DYZ19					***
22337200-CATGTCC-TATTTCG	20175314-CATGTCC-TATTTCG		DYZ19					***
22337241-GT-TC	20175355-GT-TC		DYZ19					***
22360381-GTTTT-CTTTG	20198495-GTTTT-CTTTG		DYZ19					***
22365977-GGTGG-TGTCA	20204091-GGTGG-TGTCA		DYZ19					***
22366697-TTT-AAG	20204811-TTT-AAG		DYZ19					***
22366714-ACT-TCG	20204828-ACT-TCG		DYZ19					***
22366755-AGAGA-GGAGT	20204869-AGAGA-GGAGT		DYZ19					***
22421783-GC-CT	20259897-GC-CT		DYZ19					***
22421840-TT-AG	20259954-TT-AG		DYZ19					***
22496054-AGTGT-TGTGA	20334168-AGTGT-TGTGA		DYZ19					***
22496169-TTTTG-CTTAC	20334283-TTTTG-CTTAC		DYZ19					***
23037237-A-ATTTT	20875351-A-ATTTT					20×T		***
23801733-C-CAAAAAAA	21639847-C-CAAAAAAA					31×A		***
24388083-T-TAA	22241936-T-TAA							***
25444404-CTATTTC-TTTTTTT	23298257-CTATTTC-TTTTTTT		P2_r2					***
25656575-TG-AA	23510428-TG-AA		P1_b3					***
26228689-C-CTTTT	24082542-C-CTTTT		P1_Y1			27×T		***
28253491-C-CAAAAAAAAA	26107344-C-CAAAAAAAAA		P1_b4			32×A		***
28454731-A-AT	26308584-A-AT		P1_gr2			10×T		***
28539174-C-CAAAAAA	26393027-C-CAAAAAA					20×A		***
28545880-CAAAAAA-C	26399733-CAAAAAA-C					20×A		***
58843639-CCAGCCC-GGAGTCA	56747226-GGGCTGG-TGACTCC							***
58843651-ATTCCATTCCATT-TTTCGACACCCAG	56747208-AATGGAATGGAAT-CTGGGTGTCGAAA							***
58843694-GCATTC-TTTTTG	56747172-GAATGC-CAAAAA							***
58844015-TATTCACTTCCATTTCC-T	56746835-CGAATGGAAATGGAAGT-C							***
58868388-AGTGCATTCCATTCCGTGGCT-A	56722460-GACAGCCACGGAATGGAATGC-G							***
58885276-TATTTTATTCCATGCC-T	56705575-CAAATGGCATGGAATA-C							***
58908600-GTTC-CATT	56682268-GAAC-AATG							***
58972565-T-TATTCC	56826418-T-TATTCC							***
21021632-CT-C	18859746-CT-C		P4_Dst			17×T	***
58862994-GATTTG-CATTAT	56727872-CAAATC-ATAATG						***
13485854-CCG-TCA	11330178-CCG-TCA							***
58995119-AGGCA-GGGCG	56848972-AGGCA-GGGCG						***
18688521-C-AAA	16576641-C-AAA							***
58840410-CCATTCCATTCGATTTAG-ACATTCGATTCGATTCGA	56750444-CTAAATCGAATGGAATGG-TCGAATCGAATCGAATGT							***
58843671-TTTCCGTTTCA-ATTCAATGATT	56747190-TGAAACGGAAA-AATCATTGAAT							***
13463948-TTCCCCC-CTCACCCAAAA	11308272-TTCCCCC-CTCACCCAAAA							***
58840455-CGA-TGT	56750414-TCG-ACA							***
13203970-CCACCCCGCCTC-TAAT	11048294-CCACCCCGCCTC-TAAT							***
22268297-GTGACC-TTGAGT	20106411-GTGACC-TTGAGT		DYZ19					***
58840445-CCA-GCATTTT	56750424-TGG-AAAATGC							***
13482969-TA-CC	11327293-TA-CC							***
28797878-GAGTG-AAATT	26651731-GAGTG-AAATT							***
22257030-CCACG-GCATT	20095144-CCACG-GCATT		DYZ19					***
58840395-CCGTTC-TCATT	56750471-GAACGG-AATGA							***
22263840-CAT-TCC	20101954-CAT-TCC		DYZ19					***
58823284-TCTCAT-A	56767582-ATGAGA-T							***
58828536-C-G	56762335-G-C						***
13262792-CGCC-TGCT	11107116-CGCC-TGCT						***
13263697-CGTC-TGTT	11108021-CGTC-TGTT						***
13474008-CGTA-GGTT	11318332-CGTA-GGTT						***
9416727-CTTTG-TTTTT	9579118-CTTTG-TTTTT						***
22503758-C-G	20341872-C-G		DYZ19				***
22342783-A-C	20180897-A-C		DYZ19				***
13437785-A-T	11282109-A-T						***
10030599-TAGC-AAGT	10192990-TAGC-AAGT						***
26433572-C-T	24287425-C-T		P1_Y1			19×T	***
3174374-C-T	3306333-C-T					18×T	***
5403266-C-T	5535225-C-T					15×T	***
5493431-C-T	5625390-C-T	Y60653				24×T	***
13256619-G-C	11100943-G-C						***
13324015-G-A	11168339-G-A						***
13354609-C-A	11198933-C-A						***
13437719-G-A	11282043-G-A						***
13502954-G-T	11347278-G-T						***
13503073-G-A	11347397-G-A						***
16656658-C-T	14544778-C-T					14×T	***
59032481-A-C	56886334-A-C						***
25706148-CA-C	23560001-CA-C		P1_b3			16×A	***
13557556-AC-GT	11401880-AC-GT						***
22321030-A-C	20159144-A-C		DYZ19				***
10047828-A-C	10210219-A-C						***
22328388-A-G	20166502-A-G		DYZ19				***
22235011-C-T	20073125-C-T		DYZ19				***
9911320-GCA-CCT	10073711-GCA-CCT						***
25571253-GA-G	23425106-GA-G		P1_gr1			13×A	***
58853491-CTCC-TTCA	56737377-GGAG-TGAA						***
22337713-T-A	20175827-T-A		DYZ19				***
58824569-CATTCCAATAG-C	56766285-ATGGAATCTAT-A						***
13266042-CACA-TACG	11110366-CACA-TACG						***
58885447-A-T	56705424-T-A						***
13531506-AA-G	11375830-AA-G						***
20021496-TTATATA-T	17909616-TTATATA-T		P5_Prx			15×TA	***
58841130-C-T	56749741-G-A						***
9965278-AGCAC-GGCAT	10127669-AGCAC-GGCAT						***
13471841-CTGGG-TGGGT	11316165-CTGGG-TGGGT						***
58843384-TGATG-GAATT	56747483-CATCA-AATTC						***
13570555-AGAC-TGAT	11414879-AGAC-TGAT						***
13516360-TG-CA	11360684-TG-CA						***
9952663-AG-CA	10115054-AG-CA						***
22227933-C-A	20066047-C-A		DYZ19				***
59017917-TCG-GCT	56871770-TCG-GCT						***
22314594-G-A	20152708-G-A		DYZ19				***
28178294-T-G	26032147-T-G	FGC61364	P1_b4				***
22503694-GAAT-AAAG	20341808-GAAT-AAAG		DYZ19				***
	11030778-A-C						***
20850693-GTA-G	18688807-GTA-G		P4_Dst			12×TA	***
	10827110-A-G						***
	10844239-A-T						***
	11675236-T-G						***
	10917917-G-C						***
	10917946-C-A						***
	10917955-T-G						***
	11023149-T-G						***
	10911642-T-C						***
	10766534-T-C						***
	10766544-T-C						***
	10869944-T-C						***
	10836477-T-G						***
	11035773-C-A						***
	10667996-G-T						***
24016986-C-T	21870839-C-T					15×T	***
	10844667-T-C						***
	10773729-C-A						***
13398261-G-A	11242585-G-A						***
20249276-CA-C	18087390-CA-C		P5_Dst			22×A	***
	10629636-C-A						***
	10758791-C-T						***
58823473-G-T	56767398-C-A						***
	10668001-C-A						***
	10894201-C-A						***
27080520-G-T	24934373-G-T		P1_r4			16×T	***
	10629330-T-C						***
13259717-AG-GT	11104041-AG-GT						***
	56863028-GT-CC						***
	10807068-TA-CT						***
	10972955-CTCT-TTCC						***
	10982945-CCTCGCT-TC						***
13514810-CC-GT	11359134-CC-GT						***
13465852-C-T	11310176-C-T						***
13563786-G-T	11408110-G-T						***
25738886-CTAA-C	23592739-CTAA-C		P1_b3				***
22367414-T-A	20205528-T-A		DYZ19				***
13545748-CA-C	11390072-CA-C						***
13465868-G-T	11310192-G-T						***
16137122-C-T	14025242-C-T		P8_Dst				***
26812667-AT-A	24666520-AT-A		P1_g2			16×T	***
	10784966-C-A						***
	10987194-T-G						***
13569835-TA-T	11414159-TA-T					11×A	***
	10927236-TCC-GCA						***
	11022872-TT-CA						***
9958318-GGGAAT-CGAAAC	10120709-GGGAAT-CGAAAC						***
	11015964-AGTA-CATC						***
	10763332-TTTCCA-GTTCTAT						***
	11013909-AC-GA						***
	11013918-TAC-CAG						***
	11013943-CA-TG						***
13472484-TG-CA	11316808-TG-CA						***
9931519-CTT-TTG	10093910-CTT-TTG						***
9934957-CTTGA-TTTGT	10097348-CTTGA-TTTGT						***
9946088-CT-GA	10108479-CT-GA						***
9952642-TCGAGG-CCAAGC	10115033-TCGAGG-CCAAGC						***
10061716-CTC-AT	10224107-CTC-AT						***
	10658500-GTCA-CTCT						***
	10670891-C-T						***
	10672241-TTCCT-CTCCA						***
	10676946-TATTACGG-AACTACAC,TATTACGC						***
	10683323-ATTTCTTTCGAC-CTATCCTTCTAC,CTATCTTTTGAA						***
	10689140-GT-AA						***
	10748018-TTCC-GTCT						***
	10758814-TACTT-CACTC						***
	10760349-GTACTC-CCACTT,GCACTC						***
	10763273-TTC-CTA						***
	10773716-TTTCC-ATTCG						***
	10790985-ATTC-CTTT						***
	10803523-C-T						***
	10813041-CT-AA						***
	10826872-AC-TT						***
	10826907-TT-AC						***
	10836749-A-T						***
	10851057-CTC-ACC,TTA						***
	10851997-CC-AA						***
	10869962-CATC-TACT						***
	10877044-ACTC-GCTG						***
	10880693-AAT-CAC						***
	10880700-T-A						***
	10880727-CC-TA						***
	10884578-ACTGCA-CCTTCT						***
	10884589-CT-AA						***
	10892802-TTC-CTT						***
	10894190-C-T						***
	10894207-A-T						***
	10899063-TCCAT-ACCAC						***
	10906093-CTTG-TC						***
	10952213-TCCAT-ACCAC						***
	10952237-C-CTGAAT						***
	10952256-ACTAC-TTTTAACTGA						***
	10959530-AC-TCTCCAT						***
	10964544-C-A						***
	10972920-CTA-ATC						***
	10980670-GCACAA-ACAAAG						***
	10983275-C-G						***
	10984499-TGA-AGG						***
	10994686-CTCCA-GTCCT						***
	10999996-CTA-ATC						***
	11018868-ATTA-TTTC						***
	11025088-AAC-CAT						***
	11025434-AAT-CGG						***
	11035584-TACTCGACTCC-CACTAG						***
13404867-TATATAC-CATGTAA	11249191-TATATAC-CATGTAA						***
13433622-TTTTCTCTCTTTCTCTCTT-CTTTCTCTCTCTATCTCCC	11277946-TTTTCTCTCTTTCTCTCTT-CTTTCTCTCTCTATCTCCC						***
13442553-TT-CC	11286877-TT-CC						***
13445374-AAAAGAAGAAAAAAGA-GAAGAAGAAAAAAGG	11289698-AAAAGAAGAAAAAAGA-GAAGAAGAAAAAAGG						***
13468361-GCAGA-ACAGG	11312685-GCAGA-ACAGG						***
13480242-TGTAC-GGAAG	11324566-TGTAC-GGAAG						***
13485669-GATA-TAGT	11329993-GATA-TAGT						***
13485685-CCCCCTGT-TGCCCTGG	11330009-CCCCCTGT-TGCCCTGG						***
13690724-AATGA-TATGG	11535048-AATGA-TATGG						***
13700510-AGCTCC-GGCTCG	11544834-AGCTCC-GGCTCG						***
15752635-TCTC-CCTT	13640755-TCTC-CCTT						***
16435936-GTAA-TTAAT	14324056-GTAA-TTAAT						***
21620499-ATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACT-ATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACC,GTACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACT	19458613-ATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACT-ATACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACC,GTACTATACTATACTATACTATACTATACTATACTATACTATACTATACTATACT						***
22341315-T-A	20179429-T-A		DYZ19				***
24485675-C-TT	22339528-C-TT					15×T	***
28709251-CC-TA	26563104-CC-TA						***
28793660-TA-GG	26647513-TA-GG						***
28799782-AGAACGGA-TGAAAGGC	26653635-AGAACGGA-TGAAAGGC						***
28802953-CAAAT-GAAAC	26656806-CAAAT-GAAAC						***
28805108-TT-GG	26658961-TT-GG						***
28812813-AAACG-GAAC	26666666-AAACG-GAAC						***
28813720-GGTCGAT-AGTGGAG	26667573-GGTCGAT-AGTGGAG						***
	56730318-A-T						***
	36407-G-T						***
7664487-T-G	7796446-T-G						***
9911351-GCAAG-CCAAT	10073742-GCAAG-CCAAT						***
9964214-AA-TG	10126605-AA-TG						***
	10780565-TCTC-CCTG						***
16136933-T-C	14025053-T-C		P8_Dst				***
19751585-CCAG-ACAT	17639705-CCAG-ACAT		P5_Prx				***
19751593-G-T	17639713-G-T		P5_Prx				***
19751603-T-G	17639723-T-G		P5_Prx				***
20460428-ATT-A	18298542-ATT-A		P5_Dst			17×T	***
22245746-G-A	20083860-G-A		DYZ19				***
22293346-T-C	20131460-T-C		DYZ19				***
22493340-T-A	20331454-T-A		DYZ19				***
22503940-A-C	20342054-A-C		DYZ19				***
23109873-C-T	20947987-C-T						***
23218634-G-A	21056748-G-A						***
25614551-A-G	23468404-A-G		P1_gr1				***
25833864-CA-C	23687717-CA-C		P1_b3			15×A	***
26469280-A-C	24323133-A-C		P1_Y1				***
26478948-G-C	24332801-G-C		P1_Y1				***
26697546-CT-C	24551399-CT-C		P1_g2			12×T	***
26832059-CT-C	24685912-CT-C		P1_g2			14×T	***
27061668-AT-A	24915521-AT-A		P1_r4			17×T	***
27120309-CT-C	24974162-CT-C		P1_r4			17×T	***
27429623-A-C	25283476-A-C		P1_g3				***
27483513-G-A	25337366-G-A		P1_Y2				***
27484908-G-A	25338761-G-A		P1_Y2				***
27519347-G-A	25373200-G-A		P1_Y2				***
27665773-TA-T,TAA	25519626-TA-T,TAA		P1_Y2			17×A	***
27924442-GT-G	25778295-GT-G		P1_Y2			12×T	***
28384225-TA-T	26238078-TA-T		P1_gr2			13×A	***
	56826836-CCATTCCATTCGATTCCATTCCATTCAATTCC-AG						***
	10658485-ATC-TTG						***
	10668339-GC-CA,CCACTCA						***
	10776554-TAC-CTA,TTC						***
13486557-GGAGAT-AGAGAC,AGTGAT	11330881-GGAGAT-AGAGAC,AGTGAT						***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit	POSITION-REF-ALT (hg19)	POSITION-REF-ALT (hg38)	Note
P9UH4	6861230-TTTTC-T	6993189-TTTTC-T	I removed this mutation from my data. It would appear that I have 6861230-T-TTTTC instead.
P9UH4	20040482-GGCAAGCAC-G	17928602-GGCAAGCAC-G	Checked my BAM file. It looks like half of my reads at this location have the deletion. This location is opposite to 20089217-TTGCTTGCG-T.
Manual	19675596-G-C	17563716-G-C	21C 23G
Manual	19739340-A-AAAC	17627460-A-AAAC	33 reads cover the insertion. 18 have the insertion and 15 do not.
Manual	19842176-CAATAAATAAATA-C	17730296-CAATAAATAAATA-C	72 reads derived for the deletion and 33 reads ancestral.
Manual	26179746-AAAC-A	24033599-AAAC-A	115 reads cover the deletion. 61 do not show the deletion and 54 show the deletion.
Manual	22453058-C-A	20291172-C-A	Checked BAM file. I have 537 reads which cover this point. 150 of them are A, another 376 are C, 3 are G and 8 are T. Without looking at paired end reads, I can't see any way to figure out the true location.
Manual	19600395-GGT-G	17488515-GGT-G	STR on P5. 1 read with 17 copies of GT, 23 reads with 16 copies of GT, 35 reads with 15 copies of GT, 14 reads with 14 copies of GT and one read with just 13 copies of GT.
Manual	23761608-A-AAAG	21599722-A-AAAG	About 13 reads cover the insertion. 10 of them are positive, 3 are negative. Note that there is an A>C SNP near the end of this STR.
Manual	23311147-T-TTTTC	21149261-T-TTTTC	This is an STR where the reference sequence has 15 copies of TTTC. Because of the short reads of my FGC test, it's difficult to align properly. About a dozen reads however to indicate I am positive for this insertion.
Manual	19346433-C-CCTTTCTTTCTTT	17234553-C-CCTTTCTTTCTTT	Checked my BAM file on 20141117.
Manual	17662167-GTAGATAGATAGA-G	15550287-GTAGATAGATAGA-G	This is an STR. The hg19 reference sequence has 16 copies of TAGA. My FGC BAM file has 1 read with 14 copies, 17 reads with 13 copies and 3 reads with 12 copies.
Manual	14981830-TTTCCTTCC-T	12869906-T-.	This is an STR. There are about 10 reads with the deletion and maybe one or two that have a slightly different count.
Manual	6861230-T-TTTTC	6993189-T-TTTTC	I have checked my BAM file, and I have about a half dozen reads supporting the claim that this in an insertion of TTTC. Oddly, my report from FGC indicates a deletion. This INDEL corresponds to DYS570, so I know what my value should be. I removed the deletion mutation from my FGC data.
Manual	16809474-G-GAGAT	14697594-G-GAGAT	About 10 reads, 9 of them show the insertion.
Manual	6347814-G-GAGAA	6479773-G-GAGAA	All 26 reads which cover the insertion are positive.
Manual	19973015-C-T	17861135-C-T	There are 38C and 46T. This SNP is in P5. This is a ZZ SNP as there are no distinguishing positions anywhere near, at least +/- 400bp.
Manual	20089217-TTGCTTGCG-T	17977337-TTGCTTGCG-T	Checked my BAM file. It looks like half of my reads at this location have the deletion. This location is opposite to 20040482-GGCAAGCAC-G.
Manual	22260454-G-A	20098568-G-A	Hundreds of reads. With a couple filters to remove some misaligned reads, I still have about 490 A and 678 G.
Manual	22285004-C-T	20123118-C-T	Some reads clearly belong elsewhere. Of the reads which fit here, 376 are C, 217 are T.
Manual	24899333-C-T	22753186-C-T	Looks like about half of the reads in the BAM file have the mutation.
Manual	24939079-C-T	22792932-C-T	67 C, 46 T.
Manual	26121103-C-T	23974956-C-T	1A 36C 31T. The A read and one of the T reads is misaligned.
Manual	4847052-T-G	4979011-T-G	2T 3G
Manual	16110097-A-T	13998217-A-T	35A 40T
Manual	20007955-A-G	17896075-A-G	17A 20G
Manual	19970773-A-G	17858893-A-G	27A 26G
Manual	22298978-G-T	20137092-G-T	946G 431T
Manual		10907035-A-C	6C
Manual	20551642-A-C	18389756-A-C	36A 18C
Manual	19628136-T-G	17516256-T-G	37T 12G
Manual	6274770-G-A	6406729-G-A	73A 1C 82G
Manual	9595600-C-T	9757991-C-T	1A 67C 65T
Manual	20738728-G-T	18576842-G-T	57G 64T
Manual	20905447-C-A	18743561-C-A	34C 60A

Williamson

Tree Position

Unique Mutations

Mutation Notes: